diff options
Diffstat (limited to 'MANIFEST')
| -rw-r--r-- | MANIFEST | 529 |
1 files changed, 462 insertions, 67 deletions
@@ -33,6 +33,8 @@ ./autogen.sh ./configure.ac +./.github/workflows/main.yml _DO_NOT_DISTRIBUTE_ + ./m4/aclocal_cxx.m4 ./m4/aclocal_fc.m4 ./m4/aclocal_fc.f90 @@ -71,12 +73,15 @@ ./bin/errors _DO_NOT_DISTRIBUTE_ ./bin/genparser ./bin/gcov_script _DO_NOT_DISTRIBUTE_ +./bin/h5cc.in +./bin/h5redeploy.in ./bin/h5vers ./bin/iostats ./bin/locate_sw ./bin/make_err ./bin/make_overflow ./bin/make_vers +./bin/Makefile.am ./bin/makehelp ./bin/mkdirs ./bin/newer @@ -85,12 +90,25 @@ ./bin/release ./bin/restore.sh ./bin/runtest _DO_NOT_DISTRIBUTE_ +./bin/runbkgprog _DO_NOT_DISTRIBUTE_ ./bin/snapshot ./bin/snapshot_version _DO_NOT_DISTRIBUTE_ ./bin/switch_maint_mode _DO_NOT_DISTRIBUTE_ ./bin/timekeeper _DO_NOT_DISTRIBUTE_ ./bin/trace +./bin/warnhist _DO_NOT_DISTRIBUTE_ ./bin/yodconfigure +./bin/batch/ctestP.lsf.in.cmake +./bin/batch/ctestP.sl.in.cmake +./bin/batch/ctestS.lsf.in.cmake +./bin/batch/ctestS.sl.in.cmake +./bin/batch/knl_ctestP.sl.in.cmake +./bin/batch/knl_ctestS.sl.in.cmake +./bin/batch/knl_H5detect.sl.in.cmake +./bin/batch/ctest.qsub.in.cmake +./bin/batch/ray_ctestP.lsf.in.cmake +./bin/batch/ray_ctestS.lsf.in.cmake +./bin/batch/raybsub ./bin/pkgscrpts/h5rmflags _DO_NOT_DISTRIBUTE_ ./bin/pkgscrpts/makeHDF5BinaryTarfiles.pl _DO_NOT_DISTRIBUTE_ ./bin/pkgscrpts/makeInternalREADME.pl _DO_NOT_DISTRIBUTE_ @@ -116,16 +134,59 @@ ./config/intel-flags ./config/linux-gnu ./config/linux-gnuaout +./config/linux-gnueabihf ./config/linux-gnulibc1 ./config/linux-gnulibc2 ./config/lt_vers.am ./config/Makefile.am.blank +./config/netbsd ./config/pgi-fflags ./config/pgi-flags ./config/solaris +#warnings files for both autotools and CMake +./config/clang-cxxflags +./config/clang-flags +./config/clang-warnings/developer-general +./config/clang-warnings/error-general +./config/clang-warnings/general +./config/clang-warnings/no-developer-general +./config/gnu-warnings/4.8-4.last +./config/gnu-warnings/4.8 +./config/gnu-warnings/4.9 +./config/gnu-warnings/5 +./config/gnu-warnings/6 +./config/gnu-warnings/7 +./config/gnu-warnings/8 +./config/gnu-warnings/9 +./config/gnu-warnings/cxx-general +./config/gnu-warnings/cxx-4.9 +./config/gnu-warnings/cxx-5 +./config/gnu-warnings/cxx-error-5 +./config/gnu-warnings/cxx-error-general +./config/gnu-warnings/developer-4.8 +./config/gnu-warnings/developer-7 +./config/gnu-warnings/developer-8 +./config/gnu-warnings/developer-general +./config/gnu-warnings/error-5 +./config/gnu-warnings/error-8 +./config/gnu-warnings/error-general +./config/gnu-warnings/general +./config/gnu-warnings/gfort-general +./config/gnu-warnings/gfort-4.8 +./config/gnu-warnings/gfort-5 +./config/gnu-warnings/gfort-6 +./config/gnu-warnings/gfort-8 +./config/gnu-warnings/no-developer-4.8 +./config/gnu-warnings/no-developer-8 +./config/gnu-warnings/no-developer-general +./config/intel-warnings/ifort-general +./config/intel-warnings/general + ./config/site-specific/BlankForm +./doc/code-conventions.md + ./examples/Attributes.txt ./examples/Makefile.am ./examples/h5_chunk_read.c @@ -151,8 +212,10 @@ ./examples/h5_select.c ./examples/h5_attribute.c ./examples/h5_mount.c -./examples/h5_reference.c -./examples/h5_ref2reg.c +./examples/h5_ref_compat.c +./examples/h5_ref_extern.c +./examples/h5_reference_deprec.c +./examples/h5_ref2reg_deprec.c ./examples/h5_shared_mesg.c ./examples/ph5example.c ./examples/h5_vds.c @@ -230,10 +293,12 @@ ./fortran/src/H5Sff.F90 ./fortran/src/H5Tf.c ./fortran/src/H5Tff.F90 +./fortran/src/H5VLff.F90 ./fortran/src/H5Zf.c ./fortran/src/H5Zff.F90 ./fortran/src/H5config_f.inc.cmake ./fortran/src/H5config_f.inc.in +./fortran/src/H5fort_type_defines.h.cmake ./fortran/src/H5fort_type_defines.h.in ./fortran/src/H5f90.h ./fortran/src/H5f90global.F90 @@ -248,8 +313,8 @@ ./fortran/src/h5fc.in ./fortran/src/hdf5_fortrandll.def.in - ./fortran/test/Makefile.am +./fortran/test/vol_connector.F90 ./fortran/test/fflush1.F90 ./fortran/test/fflush2.F90 ./fortran/test/fortranlib_test.F90 @@ -349,6 +414,8 @@ ./c++/src/H5DataSpace.h ./c++/src/H5DataType.cpp ./c++/src/H5DataType.h +./c++/src/H5DaccProp.cpp +./c++/src/H5DaccProp.h ./c++/src/H5DcreatProp.cpp ./c++/src/H5DcreatProp.h ./c++/src/H5DxferProp.cpp @@ -374,6 +441,8 @@ ./c++/src/H5IntType.h ./c++/src/H5LaccProp.cpp ./c++/src/H5LaccProp.h +./c++/src/H5LcreatProp.cpp +./c++/src/H5LcreatProp.h ./c++/src/H5Library.cpp ./c++/src/H5Library.h ./c++/src/H5Location.cpp @@ -392,6 +461,7 @@ ./c++/src/H5VarLenType.h ./c++/src/Makefile.am ./c++/src/RM_stylesheet.css +./c++/src/C2Cppfunction_map.htm ./c++/src/cpp_doc_config ./c++/src/h5c++.in ./c++/src/footer.html @@ -438,7 +508,10 @@ ./release_docs/INSTALL_CMake.txt ./release_docs/INSTALL_Cygwin.txt ./release_docs/INSTALL_parallel +./release_docs/INSTALL_Warnings.txt ./release_docs/INSTALL_Windows.txt +./release_docs/README_HDF5_CMake +./release_docs/README_HPC ./release_docs/RELEASE.txt ./release_docs/USING_HDF5_CMake.txt ./release_docs/USING_HDF5_VS.txt @@ -455,6 +528,7 @@ ./src/H5err.txt ./src/H5detect.c ./src/H5make_libsettings.c +./src/H5mpi.c ./src/H5overflow.txt ./src/H5private.h ./src/H5public.h @@ -474,7 +548,6 @@ ./src/H5Apublic.h ./src/H5AC.c ./src/H5ACdbg.c -./src/H5AClog.c ./src/H5ACmodule.h ./src/H5ACmpio.c ./src/H5ACpkg.h @@ -487,7 +560,6 @@ ./src/H5Bmodule.h ./src/H5Bpkg.h ./src/H5Bprivate.h -./src/H5Bpublic.h ./src/H5B2.c ./src/H5B2cache.c ./src/H5B2dbg.c @@ -498,7 +570,6 @@ ./src/H5B2module.h ./src/H5B2pkg.h ./src/H5B2private.h -./src/H5B2public.h ./src/H5B2stat.c ./src/H5B2test.c ./src/H5C.c @@ -506,6 +577,9 @@ ./src/H5Cepoch.c ./src/H5Cimage.c ./src/H5Clog.c +./src/H5Clog.h +./src/H5Clog_json.c +./src/H5Clog_trace.c ./src/H5Cmodule.h ./src/H5Cmpio.c ./src/H5Cpkg.h @@ -517,6 +591,9 @@ ./src/H5Ctest.c ./src/H5CS.c ./src/H5CSprivate.h +./src/H5CX.c +./src/H5CXmodule.h +./src/H5CXprivate.h ./src/H5D.c ./src/H5Dbtree.c ./src/H5Dbtree2.c @@ -565,6 +642,7 @@ ./src/H5EAsblock.c ./src/H5EAstat.c ./src/H5EAtest.c +./src/H5ESpublic.h ./src/H5F.c ./src/H5Faccum.c ./src/H5Fcwfs.c @@ -606,9 +684,13 @@ ./src/H5FDdrvr_module.h ./src/H5FDfamily.c ./src/H5FDfamily.h +./src/H5FDhdfs.c +./src/H5FDhdfs.h ./src/H5FDint.c ./src/H5FDlog.c ./src/H5FDlog.h +./src/H5FDmirror.c +./src/H5FDmirror.h ./src/H5FDmodule.h ./src/H5FDmpi.c ./src/H5FDmpi.h @@ -616,12 +698,18 @@ ./src/H5FDmpio.h ./src/H5FDmulti.c ./src/H5FDmulti.h +./src/H5FDros3.c +./src/H5FDros3.h ./src/H5FDpkg.h ./src/H5FDprivate.h ./src/H5FDpublic.h +./src/H5FDs3comms.h +./src/H5FDs3comms.c ./src/H5FDsec2.c ./src/H5FDsec2.h ./src/H5FDspace.c +./src/H5FDsplitter.c +./src/H5FDsplitter.h ./src/H5FDstdio.c ./src/H5FDstdio.h ./src/H5FDtest.c @@ -639,7 +727,6 @@ ./src/H5FSmodule.h ./src/H5FSpkg.h ./src/H5FSprivate.h -./src/H5FSpublic.h ./src/H5FSsection.c ./src/H5FSstat.c ./src/H5FStest.c @@ -679,7 +766,6 @@ ./src/H5HFmodule.h ./src/H5HFpkg.h ./src/H5HFprivate.h -./src/H5HFpublic.h ./src/H5HFsection.c ./src/H5HFspace.c ./src/H5HFstat.c @@ -691,7 +777,6 @@ ./src/H5HGmodule.h ./src/H5HGpkg.h ./src/H5HGprivate.h -./src/H5HGpublic.h ./src/H5HGquery.c ./src/H5HL.c ./src/H5HLcache.c @@ -702,7 +787,6 @@ ./src/H5HLpkg.h ./src/H5HLprfx.c ./src/H5HLprivate.h -./src/H5HLpublic.h ./src/H5HP.c ./src/H5HPprivate.h ./src/H5I.c @@ -712,11 +796,17 @@ ./src/H5Ipublic.h ./src/H5Itest.c ./src/H5L.c +./src/H5Ldeprec.c ./src/H5Lexternal.c ./src/H5Lmodule.h ./src/H5Lpkg.h ./src/H5Lprivate.h ./src/H5Lpublic.h +./src/H5M.c +./src/H5Mmodule.h +./src/H5Mpkg.h +./src/H5Mprivate.h +./src/H5Mpublic.h ./src/H5MF.c ./src/H5MFaggr.c ./src/H5MFdbg.c @@ -744,7 +834,9 @@ ./src/H5Ochunk.c ./src/H5Ocont.c ./src/H5Ocopy.c +./src/H5Ocopy_ref.c ./src/H5Odbg.c +./src/H5Odeprec.c ./src/H5Odrvinfo.c ./src/H5Odtype.c ./src/H5Oefl.c @@ -752,6 +844,7 @@ ./src/H5Oflush.c ./src/H5Ofsinfo.c ./src/H5Oginfo.c +./src/H5Oint.c ./src/H5Olayout.c ./src/H5Olinfo.c ./src/H5Olink.c @@ -786,6 +879,8 @@ ./src/H5Pint.c ./src/H5Plapl.c ./src/H5Plcpl.c +./src/H5Pmapl.c +./src/H5Pmcpl.c ./src/H5Pmodule.h ./src/H5Pocpl.c ./src/H5Pocpypl.c @@ -809,6 +904,7 @@ ./src/H5PLextern.h ./src/H5R.c ./src/H5Rdeprec.c +./src/H5Rint.c ./src/H5Rmodule.h ./src/H5Rpkg.h ./src/H5Rprivate.h @@ -820,6 +916,7 @@ ./src/H5S.c ./src/H5Sall.c ./src/H5Sdbg.c +./src/H5Sdeprec.c ./src/H5Shyper.c ./src/H5Smodule.h ./src/H5Smpio.c @@ -867,11 +964,36 @@ ./src/H5Tprecis.c ./src/H5Tprivate.h ./src/H5Tpublic.h +./src/H5Tref.c ./src/H5Tstrpad.c ./src/H5Tvisit.c ./src/H5Tvlen.c ./src/H5TS.c ./src/H5TSprivate.h +./src/H5VL.c +./src/H5VLcallback.c +./src/H5VLconnector.h +./src/H5VLconnector_passthru.h +./src/H5VLint.c +./src/H5VLmodule.h +./src/H5VLnative.c +./src/H5VLnative.h +./src/H5VLnative_attr.c +./src/H5VLnative_blob.c +./src/H5VLnative_dataset.c +./src/H5VLnative_datatype.c +./src/H5VLnative_file.c +./src/H5VLnative_group.c +./src/H5VLnative_link.c +./src/H5VLnative_introspect.c +./src/H5VLnative_object.c +./src/H5VLnative_token.c +./src/H5VLnative_private.h +./src/H5VLpassthru.c +./src/H5VLpassthru.h +./src/H5VLpkg.h +./src/H5VLprivate.h +./src/H5VLpublic.h ./src/H5VM.c ./src/H5VMprivate.h ./src/H5WB.c @@ -925,20 +1047,19 @@ ./test/cache_image.c ./test/cache_logging.c ./test/cache_tagging.c +./test/chunk_info.c ./test/cmpd_dset.c ./test/cork.c ./test/corrupt_stab_msg.h5 ./test/cross_read.c ./test/dangle.c ./test/deflate.h5 +./test/del_many_dense_attrs.c +./test/direct_chunk.c ./test/dsets.c ./test/dt_arith.c ./test/dtypes.c ./test/dtransform.c -./test/dynlib1.c -./test/dynlib2.c -./test/dynlib3.c -./test/dynlib4.c ./test/earray.c ./test/efc.c ./test/enc_dec_plist.c @@ -947,6 +1068,10 @@ ./test/evict_on_close.c ./test/extend.c ./test/external.c +./test/external_common.c +./test/external_common.h +./test/external_env.c +./test/external_fname.h ./test/error_test.c ./test/err_compat.c ./test/filter_error.h5 @@ -964,8 +1089,14 @@ ./test/file_image.c ./test/file_image_core_test.h5 ./test/fill_old.h5 +./test/fill18.h5 ./test/fillval.c ./test/filter_fail.c +./test/filter_plugin.c +./test/filter_plugin1_dsets.c +./test/filter_plugin2_dsets.c +./test/filter_plugin3_dsets.c +./test/filter_plugin4_groups.c ./test/flush1.c ./test/flush2.c ./test/flushrefresh.c @@ -977,10 +1108,12 @@ ./test/gen_bad_ohdr.c ./test/gen_bad_compound.c ./test/gen_bogus.c +./test/gen_bounds.c ./test/gen_cross.c ./test/gen_deflate.c ./test/gen_file_image.c ./test/gen_filespace.c +./test/gen_filters.c ./test/gen_mergemsg.c ./test/gen_new_array.c ./test/gen_new_fill.c @@ -1008,6 +1141,7 @@ ./test/h5fc_ext_none.h5 ./test/h5test.c ./test/h5test.h +./test/hdfs.c ./test/hyperslab.c ./test/istore.c ./test/le_data.h5 @@ -1015,8 +1149,10 @@ ./test/le_extlink2.h5 ./test/lheap.c ./test/links.c +./test/memleak_H5O_dtype_decode_helper_H5Odtype.h5 ./test/mergemsg.h5 ./test/mf.c +./test/mirror_vfd.c ./test/mount.c ./test/mtime.c ./test/multi_file_v16-r.h5 @@ -1024,14 +1160,18 @@ ./test/noencoder.h5 ./test/none.h5 ./test/ntypes.c +./test/null_vol_connector.c +./test/null_vol_connector.h ./test/ohdr.c ./test/objcopy.c +./test/objcopy_ref.c ./test/page_buffer.c ./test/paged_nopersist.h5 ./test/paged_persist.h5 -./test/plugin.c ./test/reserved.c +./test/ros3.c ./test/pool.c +./test/s3comms.c ./test/set_extent.c # ====distribute this for now. See HDFFV-8236==== ./test/space_overflow.c @@ -1060,26 +1200,33 @@ ./test/tcheck_version.c ./test/tconfig.c ./test/tcoords.c +./test/testabort_fail.sh.in ./test/testcheck_version.sh.in +./test/testexternal_env.sh.in ./test/testerror.sh.in ./test/testlinks_env.sh.in -./test/test_filenotclosed.sh.in +./test/test_filter_plugin.sh.in +./test/test_filters_le.h5 +./test/test_filters_be.h5 ./test/testflushrefresh.sh.in ./test/testframe.c ./test/testhdf5.c ./test/testhdf5.h ./test/testlibinfo.sh.in -./test/test_plugin.sh.in +./test/test_mirror.sh.in ./test/test_usecases.sh.in +./test/test_vol_plugin.sh.in ./test/testmeta.c ./test/testswmr.sh.in ./test/testvdsswmr.sh.in +./test/testvds_env.sh.in ./test/tfile.c ./test/tgenprop.c ./test/th5o.c ./test/th5s.c ./test/th5s.h5 ./test/theap.c +./test/thread_id.c ./test/tid.c ./test/titerate.c ./test/tlayouto.h5 @@ -1089,6 +1236,8 @@ ./test/tmtimeo.h5 ./test/ttime.c ./test/trefer.c +./test/trefer_deprec.c +./test/trefer_shutdown.c ./test/trefstr.c ./test/tselect.c ./test/tsizeslheap.h5 @@ -1108,20 +1257,20 @@ ./test/unlink.c ./test/unregister.c ./test/use_append_chunk.c +./test/use_append_chunk_mirror.c ./test/use_append_mchunks.c ./test/use_common.c ./test/use_disable_mdc_flushes.c ./test/use.h -./test/vfd.c -./test/test_filters_le.h5 -./test/test_filters_be.h5 -./test/gen_filters.c -./test/chunk_info.c ./test/vds.c +./test/vds_env.c ./test/vds_swmr.h ./test/vds_swmr_gen.c ./test/vds_swmr_reader.c ./test/vds_swmr_writer.c +./test/vfd.c +./test/vol.c +./test/vol_plugin.c ./test/testfiles/err_compat_1 ./test/testfiles/err_compat_2 @@ -1232,22 +1381,28 @@ ./testpar/t_cache_image.c ./testpar/t_chunk_alloc.c ./testpar/t_coll_chunk.c +./testpar/t_coll_md_read.c ./testpar/t_dset.c ./testpar/t_file.c ./testpar/t_file_image.c ./testpar/t_filter_read.c +./testpar/t_filters_parallel.c +./testpar/t_filters_parallel.h ./testpar/t_mdset.c ./testpar/t_mpi.c ./testpar/t_ph5basic.c ./testpar/t_pflush1.c ./testpar/t_pflush2.c +./testpar/t_pread.c ./testpar/t_prop.c ./testpar/t_shapesame.c ./testpar/t_pshutdown.c ./testpar/t_prestart.c ./testpar/t_span_tree.c ./testpar/t_init_term.c +./testpar/t_2Gio.c ./testpar/testpar.h +./testpar/testpflush.sh.in ./testpar/testphdf5.c ./testpar/testphdf5.h @@ -1351,16 +1506,20 @@ ./tools/test/h5format_convert/testfiles/h5fc_v_n_all.ddl ./tools/test/h5format_convert/testfiles/h5fc_v_bt1.ddl ./tools/test/h5format_convert/testfiles/h5fc_v_err.ddl +./tools/test/h5format_convert/testfiles/h5fc_v_err.ddl.err ./tools/test/h5format_convert/testfiles/h5fc_v_non_chunked.ddl ./tools/test/h5format_convert/testfiles/h5fc_d_file.ddl +./tools/test/h5format_convert/testfiles/h5fc_d_file.ddl.err +./tools/test/h5format_convert/testfiles/h5fc_d_file-d.ddl ./tools/test/h5format_convert/testfiles/h5fc_v_ndata_bt1.ddl ./tools/test/h5format_convert/testfiles/h5fc_dname.ddl -./tools/test/h5format_convert/testfiles/h5fc_nonexistdset_file.ddl +./tools/test/h5format_convert/testfiles/h5fc_dname.err +./tools/test/h5format_convert/testfiles/h5fc_nonexistfile.ddl.err +./tools/test/h5format_convert/testfiles/h5fc_nonexistdset_file.ddl.err ./tools/test/h5format_convert/testfiles/h5fc_help.ddl ./tools/test/h5format_convert/testfiles/h5fc_v_all.ddl ./tools/test/h5format_convert/testfiles/h5fc_nooption.ddl ./tools/test/h5format_convert/testfiles/h5fc_v_n_1d.ddl -./tools/test/h5format_convert/testfiles/h5fc_nonexistfile.ddl ./tools/test/h5format_convert/testfiles/h5fc_non_v3.h5 ./tools/test/h5format_convert/testfiles/h5fc_edge_v3.h5 ./tools/test/h5format_convert/testfiles/h5fc_err_level.h5 @@ -1411,6 +1570,7 @@ ./tools/test/h5repack/dynlib_rpk.c ./tools/test/h5repack/dynlib_vrpk.c ./tools/test/h5repack/h5repack.sh.in +./tools/test/h5repack/h5repackgentest.c ./tools/test/h5repack/h5repack_plugin.sh.in ./tools/test/h5repack/h5repacktst.c ./tools/test/h5repack/testh5repack_detect_szip.c @@ -1423,6 +1583,17 @@ ./tools/test/h5ls/h5ls_plugin.sh.in ./tools/test/h5ls/testh5ls.sh.in ./tools/test/h5ls/testh5lsvds.sh.in +./tools/test/h5ls/vds_prefix/tvds-1.ls +./tools/test/h5ls/vds_prefix/tvds-2.ls +./tools/test/h5ls/vds_prefix/tvds-3_1.ls +./tools/test/h5ls/vds_prefix/tvds-3_2.ls +./tools/test/h5ls/vds_prefix/tvds-4.ls +./tools/test/h5ls/vds_prefix/tvds-5.ls + +# h5ls test error files +./tools/test/h5ls/errfiles/nosuchfile.err +./tools/test/h5ls/errfiles/textlinksrc-nodangle-1.err +./tools/test/h5ls/errfiles/tgroup-1.err # h5copy sources ./tools/src/h5copy/Makefile.am @@ -1430,6 +1601,7 @@ ./tools/test/h5copy/Makefile.am ./tools/test/h5copy/h5copygentest.c ./tools/test/h5copy/testh5copy.sh.in +./tools/test/h5copy/dynlib_copy.c ./tools/lib/Makefile.am @@ -1458,12 +1630,13 @@ ./tools/lib/io_timer.c ./tools/lib/io_timer.h +./tools/libtest/Makefile.am +./tools/libtest/h5tools_test_utils.c + ./tools/src/misc/Makefile.am -./tools/src/misc/h5cc.in ./tools/src/misc/h5clear.c ./tools/src/misc/h5debug.c ./tools/src/misc/h5mkgrp.c -./tools/src/misc/h5redeploy.in ./tools/src/misc/h5repart.c ./tools/test/misc/Makefile.am ./tools/test/misc/h5repart_gentest.c @@ -1471,15 +1644,39 @@ ./tools/test/misc/testh5mkgrp.sh.in ./tools/test/misc/testh5repart.sh.in ./tools/test/misc/talign.c +./tools/test/misc/testfiles/h5clear_equal_after_size.ddl +./tools/test/misc/testfiles/h5clear_equal_before_size.ddl +./tools/test/misc/testfiles/h5clear_greater_after_size.ddl +./tools/test/misc/testfiles/h5clear_greater_before_size.ddl +./tools/test/misc/testfiles/h5clear_less_after_size.ddl +./tools/test/misc/testfiles/h5clear_less_before_size.ddl ./tools/test/misc/testfiles/h5clear_missing_file.ddl -./tools/test/misc/testfiles/h5clear_no_mdc_image.ddl -./tools/test/misc/testfiles/h5clear_open_fail.ddl +./tools/test/misc/testfiles/h5clear_missing_file.err +./tools/test/misc/testfiles/h5clear_noclose_after_size.ddl +./tools/test/misc/testfiles/h5clear_noclose_before_size.ddl +./tools/test/misc/testfiles/h5clear_no_mdc_image.err +./tools/test/misc/testfiles/h5clear_open_fail.err +./tools/test/misc/testfiles/h5clear_status_noclose_after_size.ddl ./tools/test/misc/testfiles/h5clear_usage.ddl +./tools/test/misc/testfiles/h5clear_user_equal_after_size.ddl +./tools/test/misc/testfiles/h5clear_user_equal_before_size.ddl +./tools/test/misc/testfiles/h5clear_user_greater_after_size.ddl +./tools/test/misc/testfiles/h5clear_user_greater_before_size.ddl +./tools/test/misc/testfiles/h5clear_user_less_after_size.ddl +./tools/test/misc/testfiles/h5clear_user_less_before_size.ddl +./tools/test/misc/testfiles/h5clear_fsm_persist_equal.h5 +./tools/test/misc/testfiles/h5clear_fsm_persist_greater.h5 +./tools/test/misc/testfiles/h5clear_fsm_persist_less.h5 +./tools/test/misc/testfiles/h5clear_fsm_persist_noclose.h5 +./tools/test/misc/testfiles/h5clear_fsm_persist_user_equal.h5 +./tools/test/misc/testfiles/h5clear_fsm_persist_user_greater.h5 +./tools/test/misc/testfiles/h5clear_fsm_persist_user_less.h5 ./tools/test/misc/testfiles/h5clear_log_v3.h5 ./tools/test/misc/testfiles/h5clear_mdc_image.h5 ./tools/test/misc/testfiles/h5clear_sec2_v0.h5 ./tools/test/misc/testfiles/h5clear_sec2_v2.h5 ./tools/test/misc/testfiles/h5clear_sec2_v3.h5 +./tools/test/misc/testfiles/h5clear_status_noclose.h5 ./tools/test/misc/testfiles/latest_h5clear_log_v3.h5 ./tools/test/misc/testfiles/latest_h5clear_sec2_v3.h5 ./tools/test/misc/testfiles/mod_h5clear_mdc_image.h5 @@ -1512,10 +1709,12 @@ ./tools/test/h5stat/testh5stat.sh.in ./tools/test/h5stat/testfiles/h5stat_dims1.ddl ./tools/test/h5stat/testfiles/h5stat_dims2.ddl -./tools/test/h5stat/testfiles/h5stat_err1_dims.ddl -./tools/test/h5stat/testfiles/h5stat_err1_links.ddl -./tools/test/h5stat/testfiles/h5stat_err1_numattrs.ddl -./tools/test/h5stat/testfiles/h5stat_err2_numattrs.ddl +./tools/test/h5stat/testfiles/h5stat_err_old_fill.h5 +./tools/test/h5stat/testfiles/h5stat_err_old_fill.ddl +./tools/test/h5stat/testfiles/h5stat_err_old_layout.h5 +./tools/test/h5stat/testfiles/h5stat_err_old_layout.ddl +./tools/test/h5stat/testfiles/h5stat_err_refcount.h5 +./tools/test/h5stat/testfiles/h5stat_err_refcount.ddl ./tools/test/h5stat/testfiles/h5stat_filters.ddl ./tools/test/h5stat/testfiles/h5stat_filters-d.ddl ./tools/test/h5stat/testfiles/h5stat_filters-dT.ddl @@ -1547,10 +1746,21 @@ ./tools/test/h5stat/testfiles/h5stat_threshold.h5 ./tools/test/h5stat/testfiles/h5stat_tsohm.ddl ./tools/test/h5stat/testfiles/h5stat_tsohm.h5 +./tools/test/h5stat/testfiles/h5stat_err_refcount.err +./tools/test/h5stat/testfiles/h5stat_err_old_layout.err +./tools/test/h5stat/testfiles/h5stat_err_old_fill.err +./tools/test/h5stat/testfiles/h5stat_err1_dims.err +./tools/test/h5stat/testfiles/h5stat_err1_links.err +./tools/test/h5stat/testfiles/h5stat_err1_numattrs.err +./tools/test/h5stat/testfiles/h5stat_err2_numattrs.err +./tools/test/h5stat/testfiles/h5stat_notexist.err +./tools/test/h5stat/testfiles/h5stat_nofile.err # h5dump test files ./tools/testfiles/charsets.h5 ./tools/testfiles/charsets.ddl +./tools/testfiles/err_attr_dspace.h5 +./tools/testfiles/err_attr_dspace.ddl ./tools/testfiles/family_file00000.h5 ./tools/testfiles/family_file00001.h5 ./tools/testfiles/family_file00002.h5 @@ -1576,6 +1786,7 @@ ./tools/testfiles/h5dump-help.txt ./tools/testfiles/non_existing.ddl ./tools/testfiles/packedbits.ddl +./tools/testfiles/t128bit_float.h5 ./tools/testfiles/taindices.h5 ./tools/testfiles/tall-1.ddl ./tools/testfiles/tall-2.ddl @@ -1740,6 +1951,8 @@ ./tools/testfiles/tints4dims.h5 ./tools/testfiles/tintsattrs.ddl ./tools/testfiles/tintsattrs.h5 +./tools/testfiles/tintsnodata.ddl +./tools/testfiles/tintsnodata.h5 ./tools/testfiles/tlarge_objname.ddl ./tools/testfiles/tlarge_objname.h5 ./tools/testfiles/tldouble.h5 @@ -2016,6 +2229,28 @@ ./tools/testfiles/zerodim.ddl ./tools/testfiles/zerodim.h5 +# h5dump new reference validation +./tools/testfiles/trefer_attrR.ddl +./tools/testfiles/trefer_compatR.ddl +./tools/testfiles/trefer_extR.ddl +./tools/testfiles/trefer_grpR.ddl +./tools/testfiles/trefer_obj_delR.ddl +./tools/testfiles/trefer_objR.ddl +./tools/testfiles/trefer_paramR.ddl +./tools/testfiles/trefer_reg_1dR.ddl +./tools/testfiles/trefer_regR.ddl +# h5dump and h5diff new reference files +./tools/testfiles/trefer_attr.h5 +./tools/testfiles/trefer_compat.h5 +./tools/testfiles/trefer_ext1.h5 +./tools/testfiles/trefer_ext2.h5 +./tools/testfiles/trefer_grp.h5 +./tools/testfiles/trefer_obj_del.h5 +./tools/testfiles/trefer_obj.h5 +./tools/testfiles/trefer_param.h5 +./tools/testfiles/trefer_reg_1d.h5 +./tools/testfiles/trefer_reg.h5 + # Expected output from h5ls tests ./tools/testfiles/nosuchfile.ls ./tools/testfiles/help-1.ls @@ -2196,6 +2431,7 @@ ./tools/test/h5diff/testfiles/h5diff_56.txt ./tools/test/h5diff/testfiles/h5diff_57.txt ./tools/test/h5diff/testfiles/h5diff_58.txt +./tools/test/h5diff/testfiles/h5diff_58_ref.txt ./tools/test/h5diff/testfiles/h5diff_59.txt ./tools/test/h5diff/testfiles/h5diff_60.txt ./tools/test/h5diff/testfiles/h5diff_61.txt @@ -2203,6 +2439,7 @@ ./tools/test/h5diff/testfiles/h5diff_63.txt ./tools/test/h5diff/testfiles/h5diff_600.txt ./tools/test/h5diff/testfiles/h5diff_601.txt +./tools/test/h5diff/testfiles/h5diff_601_ERR.err ./tools/test/h5diff/testfiles/h5diff_603.txt ./tools/test/h5diff/testfiles/h5diff_604.txt ./tools/test/h5diff/testfiles/h5diff_605.txt @@ -2309,6 +2546,7 @@ ./tools/test/h5diff/testfiles/h5diff_452.txt ./tools/test/h5diff/testfiles/h5diff_453.txt ./tools/test/h5diff/testfiles/h5diff_454.txt +./tools/test/h5diff/testfiles/dangling_link.err ./tools/test/h5diff/testfiles/h5diff_455.txt ./tools/test/h5diff/testfiles/h5diff_456.txt ./tools/test/h5diff/testfiles/h5diff_457.txt @@ -2356,6 +2594,7 @@ ./tools/test/h5diff/testfiles/h5diff_attr1.h5 ./tools/test/h5diff/testfiles/h5diff_attr2.h5 +./tools/test/h5diff/testfiles/h5diff_attr3.h5 ./tools/test/h5diff/testfiles/h5diff_attr_v_level1.h5 ./tools/test/h5diff/testfiles/h5diff_attr_v_level2.h5 ./tools/test/h5diff/testfiles/h5diff_basic1.h5 @@ -2397,15 +2636,12 @@ ./tools/test/h5diff/testfiles/compounds_array_vlen2.h5 ./tools/test/h5diff/testfiles/non_comparables1.h5 ./tools/test/h5diff/testfiles/non_comparables2.h5 -./tools/test/h5diff/testfiles/tmptest2.he5 -./tools/test/h5diff/testfiles/tmpSingleSiteBethe.reference.h5 -./tools/test/h5diff/testfiles/h5diff_tmp1.txt -./tools/test/h5diff/testfiles/tmptest.he5 -./tools/test/h5diff/testfiles/h5diff_tmp2.txt -./tools/test/h5diff/testfiles/tmpSingleSiteBethe.output.h5 +./tools/test/h5diff/testfiles/h5diff_8625.txt +./tools/test/h5diff/testfiles/h5diff_8639.txt ./tools/test/h5diff/testfiles/tudfilter.h5 ./tools/test/h5diff/testfiles/tudfilter2.h5 ./tools/test/h5diff/testfiles/h5diff_ud.txt +./tools/test/h5diff/testfiles/h5diff_udfail.err ./tools/test/h5diff/testfiles/h5diff_udfail.txt ./tools/test/h5diff/testfiles/diff_strings1.h5 ./tools/test/h5diff/testfiles/diff_strings2.h5 @@ -2414,9 +2650,12 @@ ./tools/test/h5diff/testfiles/h5diff_v1.txt ./tools/test/h5diff/testfiles/h5diff_v2.txt ./tools/test/h5diff/testfiles/h5diff_v3.txt +#reg_ref +./tools/test/h5diff/testfiles/h5diff_reg.txt #test files for h5repack ./tools/test/h5repack/testfiles/README +./tools/test/h5repack/testfiles/bounds_latest_latest.h5 ./tools/test/h5repack/testfiles/h5repack_aggr.h5 ./tools/test/h5repack/testfiles/h5repack_attr.h5 ./tools/test/h5repack/testfiles/h5repack_attr_refs.h5 @@ -2424,12 +2663,25 @@ ./tools/test/h5repack/testfiles/h5repack_early.h5 ./tools/test/h5repack/testfiles/h5repack_ext.bin ./tools/test/h5repack/testfiles/h5repack_ext.h5 +./tools/test/h5repack/testfiles/h5repack_f32le.h5 +./tools/test/h5repack/testfiles/h5repack_f32le_ex-0.dat +./tools/test/h5repack/testfiles/h5repack_f32le_ex.h5 ./tools/test/h5repack/testfiles/h5repack_fill.h5 ./tools/test/h5repack/testfiles/h5repack_filters.h5 ./tools/test/h5repack/testfiles/h5repack_fletcher.h5 ./tools/test/h5repack/testfiles/h5repack_fsm_aggr_nopersist.h5 ./tools/test/h5repack/testfiles/h5repack_fsm_aggr_persist.h5 ./tools/test/h5repack/testfiles/h5repack_hlink.h5 +./tools/test/h5repack/testfiles/h5repack_int32le_1d.h5 +./tools/test/h5repack/testfiles/h5repack_int32le_1d_ex-0.dat +./tools/test/h5repack/testfiles/h5repack_int32le_1d_ex-1.dat +./tools/test/h5repack/testfiles/h5repack_int32le_1d_ex.h5 +./tools/test/h5repack/testfiles/h5repack_int32le_2d.h5 +./tools/test/h5repack/testfiles/h5repack_int32le_2d_ex-0.dat +./tools/test/h5repack/testfiles/h5repack_int32le_2d_ex.h5 +./tools/test/h5repack/testfiles/h5repack_int32le_3d.h5 +./tools/test/h5repack/testfiles/h5repack_int32le_3d_ex-0.dat +./tools/test/h5repack/testfiles/h5repack_int32le_3d_ex.h5 ./tools/test/h5repack/testfiles/h5repack.info ./tools/test/h5repack/testfiles/h5repack_layout.h5 ./tools/test/h5repack/testfiles/h5repack_layouto.h5 @@ -2448,11 +2700,18 @@ ./tools/test/h5repack/testfiles/h5repack_shuffle.h5 ./tools/test/h5repack/testfiles/h5repack_soffset.h5 ./tools/test/h5repack/testfiles/h5repack_szip.h5 +./tools/test/h5repack/testfiles/h5repack_uint8be.h5 +./tools/test/h5repack/testfiles/h5repack_uint8be_ex-0.dat +./tools/test/h5repack/testfiles/h5repack_uint8be_ex-1.dat +./tools/test/h5repack/testfiles/h5repack_uint8be_ex-2.dat +./tools/test/h5repack/testfiles/h5repack_uint8be_ex-3.dat +./tools/test/h5repack/testfiles/h5repack_uint8be_ex.h5 ./tools/test/h5repack/testfiles/ublock.bin ./tools/test/h5repack/testfiles/crtorder.tordergr.h5.ddl ./tools/test/h5repack/testfiles/deflate_limit.h5repack_layout.h5.ddl ./tools/test/h5repack/testfiles/plugin_none.h5repack_layout.UD.h5.tst ./tools/test/h5repack/testfiles/plugin_test.h5repack_layout.h5.tst +./tools/test/h5repack/testfiles/plugin_zero.h5repack_layout.h5.tst ./tools/test/h5repack/testfiles/plugin_version_test.h5repack_layout.h5.tst ./tools/test/h5repack/testfiles/h5repack-help.txt ./tools/test/h5repack/testfiles/h5repack_filters.h5-gzip_verbose_filters.tst @@ -2461,7 +2720,7 @@ ./tools/test/h5repack/testfiles/h5repack_layout.UD.h5-plugin_none.ddl ./tools/test/h5repack/testfiles/h5repack_layout.h5-plugin_test.ddl ./tools/test/h5repack/testfiles/h5repack_layout.h5-plugin_version_test.ddl -./tools/test/h5repack/testfiles/h5repack_layout.h5-plugin_zero.tst +./tools/test/h5repack/testfiles/h5repack_layout.h5-plugin_zero.ddl ./tools/test/h5repack/testfiles/GS.h5repack_paged_nopersist.h5.ddl ./tools/test/h5repack/testfiles/S.h5repack_fsm_aggr_persist.h5.ddl ./tools/test/h5repack/testfiles/SP.h5repack_fsm_aggr_nopersist.h5.ddl @@ -2473,6 +2732,8 @@ ./tools/test/h5repack/testfiles/3_1_vds.h5-vds_chunk2x5x8-v.ddl ./tools/test/h5repack/testfiles/4_vds.h5-vds_conti-v.ddl ./tools/test/h5repack/testfiles/4_vds.h5-vds_compa-v.ddl +./tools/test/h5repack/testfiles/attrregion.tattrreg.h5.ddl +./tools/test/h5repack/testfiles/dataregion.tdatareg.h5.ddl # jam utility and tests ./tools/src/h5jam/Makefile.am @@ -2504,9 +2765,16 @@ ./tools/test/h5copy/testfiles/h5copy_extlinks_src.h5 ./tools/test/h5copy/testfiles/h5copy_extlinks_trg.h5 ./tools/test/h5copy/testfiles/h5copy_extlinks_src.out.ls +./tools/test/h5copy/testfiles/h5copy_misc1.err ./tools/test/h5copy/testfiles/h5copy_misc1.out ./tools/test/h5copy/testfiles/h5copytst_new.h5 ./tools/test/h5copy/testfiles/h5copytst_new.out.ls +./tools/test/h5copy/testfiles/h5copy_plugin_fail_ERR.out.h5.txt +./tools/test/h5copy/testfiles/h5copy_plugin_test.out.h5.txt +./tools/test/h5copy/testfiles/tudfilter.h5 +./tools/test/h5copy/testfiles/tudfilter2.h5 +./tools/test/h5copy/testfiles/tudfilter.h5.txt +./tools/test/h5copy/testfiles/tudfilter.h5_ERR.txt # test files for h5mkgrp ./tools/testfiles/h5mkgrp_nested_p.ls @@ -2527,6 +2795,8 @@ ./tools/test/perform/build_h5perf_alone.sh ./tools/test/perform/build_h5perf_serial_alone.sh ./tools/test/perform/chunk.c +./tools/test/perform/chunk_cache.c +./tools/test/perform/direct_write_perf.c ./tools/test/perform/gen_report.pl ./tools/test/perform/iopipe.c ./tools/test/perform/overhead.c @@ -2544,6 +2814,18 @@ ./tools/test/perform/sio_standalone.h ./tools/test/perform/zip_perf.c +# Utils directory +./utils/COPYING +./utils/Makefile.am + +# Mirror VFD utilities +./utils/mirror_vfd/Makefile.am +./utils/mirror_vfd/mirror_remote.c +./utils/mirror_vfd/mirror_remote.h +./utils/mirror_vfd/mirror_server.c +./utils/mirror_vfd/mirror_server_stop.c +./utils/mirror_vfd/mirror_writer.c + # high level libraries ./hl/COPYING ./hl/Makefile.am @@ -2604,7 +2886,6 @@ ./hl/test/COPYING ./hl/test/H5srcdir_str.h.in ./hl/test/Makefile.am -./hl/test/dectris_hl_perf.c ./hl/test/dsdata.txt ./hl/test/dslat.txt ./hl/test/dslon.txt @@ -2623,8 +2904,8 @@ ./hl/test/test_ds_be.h5 ./hl/test/test_ds_le.h5 ./hl/test/test_dset_append.c -./hl/test/test_dset_opt.c ./hl/test/test_file_image.c +./hl/test/test_h5do_compat.c ./hl/test/test_image.c ./hl/test/test_ld.c ./hl/test/test_ld.h5 @@ -2665,16 +2946,17 @@ # expected test output from testing h5watch # -./hl/tools/testfiles/w-err-cmpd1.ddl -./hl/tools/testfiles/w-err-cmpd2.ddl -./hl/tools/testfiles/w-err-cmpd3.ddl -./hl/tools/testfiles/w-err-cmpd4.ddl -./hl/tools/testfiles/w-err-cmpd5.ddl -./hl/tools/testfiles/w-err-dset1.ddl -./hl/tools/testfiles/w-err-dset2.ddl -./hl/tools/testfiles/w-err-dset-nomax.ddl -./hl/tools/testfiles/w-err-dset-none.ddl -./hl/tools/testfiles/w-err-file.ddl +./hl/tools/testfiles/w-err-std.ddl +./hl/tools/testfiles/w-err-cmpd1.err +./hl/tools/testfiles/w-err-cmpd2.err +./hl/tools/testfiles/w-err-cmpd3.err +./hl/tools/testfiles/w-err-cmpd4.err +./hl/tools/testfiles/w-err-cmpd5.err +./hl/tools/testfiles/w-err-dset1.err +./hl/tools/testfiles/w-err-dset2.err +./hl/tools/testfiles/w-err-dset-nomax.err +./hl/tools/testfiles/w-err-dset-none.err +./hl/tools/testfiles/w-err-file.err ./hl/tools/testfiles/w-err-poll0.ddl ./hl/tools/testfiles/w-err-poll.ddl ./hl/tools/testfiles/w-err-width.ddl @@ -2776,6 +3058,32 @@ ./java/src/jni/h5oImp.h ./java/src/jni/h5pImp.c ./java/src/jni/h5pImp.h +./java/src/jni/h5pACPLImp.c +./java/src/jni/h5pACPLImp.h +./java/src/jni/h5pDAPLImp.c +./java/src/jni/h5pDAPLImp.h +./java/src/jni/h5pDCPLImp.c +./java/src/jni/h5pDCPLImp.h +./java/src/jni/h5pDXPLImp.c +./java/src/jni/h5pDXPLImp.h +./java/src/jni/h5pFAPLImp.c +./java/src/jni/h5pFAPLImp.h +./java/src/jni/h5pFCPLImp.c +./java/src/jni/h5pFCPLImp.h +./java/src/jni/h5pGAPLImp.c +./java/src/jni/h5pGAPLImp.h +./java/src/jni/h5pGCPLImp.c +./java/src/jni/h5pGCPLImp.h +./java/src/jni/h5pLAPLImp.c +./java/src/jni/h5pLAPLImp.h +./java/src/jni/h5pLCPLImp.c +./java/src/jni/h5pLCPLImp.h +./java/src/jni/h5pOCPLImp.c +./java/src/jni/h5pOCPLImp.h +./java/src/jni/h5pOCpyPLImp.c +./java/src/jni/h5pOCpyPLImp.h +./java/src/jni/h5pStrCPLImp.c +./java/src/jni/h5pStrCPLImp.h ./java/src/jni/h5plImp.c ./java/src/jni/h5plImp.h ./java/src/jni/h5rImp.c @@ -2784,6 +3092,8 @@ ./java/src/jni/h5sImp.h ./java/src/jni/h5tImp.c ./java/src/jni/h5tImp.h +./java/src/jni/h5vlImp.c +./java/src/jni/h5vlImp.h ./java/src/jni/h5zImp.c ./java/src/jni/h5zImp.h @@ -2800,10 +3110,10 @@ ./java/src/hdf/hdf5lib/callbacks/H5D_append_t.java ./java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java ./java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java -./java/src/hdf/hdf5lib/callbacks/H5L_iterate_cb.java ./java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java -./java/src/hdf/hdf5lib/callbacks/H5O_iterate_cb.java +./java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java ./java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java +./java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java ./java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_cb.java ./java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java ./java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_cb.java @@ -2850,10 +3160,14 @@ ./java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java ./java/src/hdf/hdf5lib/structs/H5E_error2_t.java ./java/src/hdf/hdf5lib/structs/H5F_info2_t.java +./java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java +./java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java ./java/src/hdf/hdf5lib/structs/H5G_info_t.java ./java/src/hdf/hdf5lib/structs/H5L_info_t.java ./java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java ./java/src/hdf/hdf5lib/structs/H5O_info_t.java +./java/src/hdf/hdf5lib/structs/H5O_native_info_t.java +./java/src/hdf/hdf5lib/structs/H5O_token_t.java ./java/src/hdf/hdf5lib/H5.java ./java/src/hdf/hdf5lib/HDF5Constants.java @@ -2866,7 +3180,7 @@ ./java/examples/intro/Makefile.am ./java/examples/intro/CMakeLists.txt -./java/examples/intro/runExample.sh.in +./java/examples/intro/JavaIntroExample.sh.in ./java/examples/intro/H5_CreateAttribute.java ./java/examples/intro/H5_CreateDataset.java ./java/examples/intro/H5_CreateFile.java @@ -2877,7 +3191,7 @@ ./java/examples/groups/Makefile.am ./java/examples/groups/CMakeLists.txt -./java/examples/groups/runExample.sh.in +./java/examples/groups/JavaGroupExample.sh.in ./java/examples/groups/H5Ex_G_Create.java ./java/examples/groups/H5Ex_G_Iterate.java ./java/examples/groups/H5Ex_G_Compact.java @@ -2891,7 +3205,7 @@ ./java/examples/datasets/Makefile.am ./java/examples/datasets/CMakeLists.txt -./java/examples/datasets/runExample.sh.in +./java/examples/datasets/JavaDatasetExample.sh.in ./java/examples/datasets/H5Ex_D_Alloc.java ./java/examples/datasets/H5Ex_D_Checksum.java ./java/examples/datasets/H5Ex_D_Chunk.java @@ -2913,7 +3227,7 @@ ./java/examples/datatypes/Makefile.am ./java/examples/datatypes/CMakeLists.txt -./java/examples/datatypes/runExample.sh.in +./java/examples/datatypes/JavaDatatypeExample.sh.in ./java/examples/datatypes/H5Ex_T_Array.java ./java/examples/datatypes/H5Ex_T_ArrayAttribute.java ./java/examples/datatypes/H5Ex_T_Bit.java @@ -2987,8 +3301,45 @@ ./java/test/Makefile.am ./java/test/CMakeLists.txt ./java/test/junit.sh.in -./java/test/JUnit-interface.txt -./java/test/JUnit-interface.ert +./java/test/testfiles/JUnit-TestH5.txt +./java/test/testfiles/JUnit-TestH5A.txt +./java/test/testfiles/JUnit-TestH5Dparams.txt +./java/test/testfiles/JUnit-TestH5D.txt +./java/test/testfiles/JUnit-TestH5Dplist.txt +./java/test/testfiles/JUnit-TestH5E.txt +./java/test/testfiles/JUnit-TestH5Edefault.txt +./java/test/testfiles/JUnit-TestH5Eparams.txt +./java/test/testfiles/JUnit-TestH5Eregister.txt +./java/test/testfiles/JUnit-TestH5Fparams.txt +./java/test/testfiles/JUnit-TestH5Fbasic.txt +./java/test/testfiles/JUnit-TestH5F.txt +./java/test/testfiles/JUnit-TestH5Fswmr.txt +./java/test/testfiles/JUnit-TestH5Gbasic.txt +./java/test/testfiles/JUnit-TestH5G.txt +./java/test/testfiles/JUnit-TestH5Giterate.txt +./java/test/testfiles/JUnit-TestH5Lparams.txt +./java/test/testfiles/JUnit-TestH5Lbasic.txt +./java/test/testfiles/JUnit-TestH5Lcreate.txt +./java/test/testfiles/JUnit-TestH5Oparams.txt +./java/test/testfiles/JUnit-TestH5Obasic.txt +./java/test/testfiles/JUnit-TestH5Ocreate.txt +./java/test/testfiles/JUnit-TestH5Ocopy.txt +./java/test/testfiles/JUnit-TestH5P.txt +./java/test/testfiles/JUnit-TestH5PData.txt +./java/test/testfiles/JUnit-TestH5Pfapl.txt +./java/test/testfiles/JUnit-TestH5Pfaplhdfs.txt +./java/test/testfiles/JUnit-TestH5Pfapls3.txt +./java/test/testfiles/JUnit-TestH5Plist.txt +./java/test/testfiles/JUnit-TestH5Pvirtual.txt +./java/test/testfiles/JUnit-TestH5PL.txt +./java/test/testfiles/JUnit-TestH5R.txt +./java/test/testfiles/JUnit-TestH5Sbasic.txt +./java/test/testfiles/JUnit-TestH5S.txt +./java/test/testfiles/JUnit-TestH5Tparams.txt +./java/test/testfiles/JUnit-TestH5Tbasic.txt +./java/test/testfiles/JUnit-TestH5T.txt +./java/test/testfiles/JUnit-TestH5VL.txt +./java/test/testfiles/JUnit-TestH5Z.txt ./java/test/h5ex_g_iterate.orig ./java/test/TestH5.java ./java/test/TestH5A.java @@ -2997,6 +3348,7 @@ ./java/test/TestH5Dplist.java ./java/test/TestH5E.java ./java/test/TestH5Edefault.java +./java/test/TestH5Eparams.java ./java/test/TestH5Eregister.java ./java/test/TestH5Fparams.java ./java/test/TestH5Fbasic.java @@ -3015,6 +3367,8 @@ ./java/test/TestH5P.java ./java/test/TestH5PData.java ./java/test/TestH5Pfapl.java +./java/test/TestH5Pfaplhdfs.java +./java/test/TestH5Pfapls3.java ./java/test/TestH5Plist.java ./java/test/TestH5Pvirtual.java ./java/test/TestH5PL.java @@ -3024,34 +3378,48 @@ ./java/test/TestH5Tparams.java ./java/test/TestH5Tbasic.java ./java/test/TestH5T.java +./java/test/TestH5VL.java ./java/test/TestH5Z.java ./java/test/TestAll.java ./java/lib/hamcrest-core.jar ./java/lib/junit.jar ./java/lib/simplelogger.properties -./java/lib/slf4j-api-1.7.5.jar -./java/lib/ext/slf4j-nop-1.7.5.jar -./java/lib/ext/slf4j-simple-1.7.5.jar +./java/lib/slf4j-api-1.7.25.jar +./java/lib/ext/slf4j-nop-1.7.25.jar +./java/lib/ext/slf4j-simple-1.7.25.jar # CMake-specific Files +./config/toolchain/build32.cmake +./config/toolchain/clang.cmake +./config/toolchain/crayle.cmake +./config/toolchain/GCC.cmake +./config/toolchain/intel.cmake +./config/toolchain/mingw64.cmake +./config/toolchain/PGI.cmake + ./config/cmake/cacheinit.cmake ./config/cmake/CMakeFindJavaCommon.cmake ./config/cmake/ConversionTests.c ./config/cmake/ConfigureChecks.cmake ./config/cmake/CPack.Info.plist.in ./config/cmake/CTestCustom.cmake -./config/cmake/FindHDFJAVA.cmake.in -./config/cmake/FindJNI.cmake +./config/cmake/fileCompareTest.cmake +./config/cmake/FindHDFS.cmake ./config/cmake/H5cxx_config.h.in ./config/cmake/H5pubconf.h.in ./config/cmake/hdf5-config.cmake.in ./config/cmake/hdf5-config-version.cmake.in ./config/cmake/HDFCompilerFlags.cmake +./config/cmake/HDFCXXCompilerFlags.cmake +./config/cmake/HDFFortranCompilerFlags.cmake ./config/cmake/HDF5_Process_Flex_Files.cmake ./config/cmake/HDF5Macros.cmake ./config/cmake/HDF5UseFortran.cmake ./config/cmake/jrunTest.cmake +./config/cmake/jvolTest.cmake +./config/cmake/libh5cc.in +./config/cmake/libhdf5.pc.in ./config/cmake/libhdf5.settings.cmake.in ./config/cmake/mccacheinit.cmake ./config/cmake/patch.xml @@ -3062,11 +3430,11 @@ ./config/cmake/UseJavaSymlinks.cmake ./config/cmake/userblockTest.cmake ./config/cmake/vfdTest.cmake +./config/cmake/volTest.cmake +./config/cmake/wait_H5Tinit.cmake -./config/cmake_ext_mod/CheckTypeSize.cmake ./config/cmake_ext_mod/ConfigureChecks.cmake ./config/cmake_ext_mod/CTestCustom.cmake -./config/cmake_ext_mod/FindMPI.cmake ./config/cmake_ext_mod/FindSZIP.cmake ./config/cmake_ext_mod/GetTimeOfDayTest.cpp ./config/cmake_ext_mod/grepTest.cmake @@ -3077,6 +3445,7 @@ ./config/cmake_ext_mod/HDFLibMacros.cmake ./config/cmake_ext_mod/HDFMacros.cmake ./config/cmake_ext_mod/HDFTests.c +./config/cmake_ext_mod/HDFUseCXX.cmake ./config/cmake_ext_mod/HDFUseFortran.cmake ./config/cmake_ext_mod/NSIS.InstallOptions.ini.in ./config/cmake_ext_mod/NSIS.template.in @@ -3088,7 +3457,6 @@ # CMake-specific Examples Files ./config/cmake/HDF5_Examples.cmake.in -./config/cmake/HDF518_Examples.cmake.in ./release_docs/USING_CMake_Examples.txt ./CMakeLists.txt @@ -3102,6 +3470,7 @@ ./c++/src/CMakeLists.txt ./c++/test/CMakeLists.txt ./c++/test/CMakeTests.cmake +./c++/test/CMakeVFDTests.cmake ./examples/CMakeLists.txt ./examples/CMakeTests.cmake ./examples/run-all-ex.sh @@ -3139,11 +3508,18 @@ ./hl/tools/h5watch/CMakeTests.cmake ./src/CMakeLists.txt ./test/CMakeLists.txt +./test/CMakePassthroughVOLTests.cmake ./test/CMakeTests.cmake +./test/CMakeVFDTests.cmake +./test/flushrefreshTest.cmake +./test/ShellTests.cmake ./testpar/CMakeLists.txt ./testpar/CMakeTests.cmake +./testpar/CMakeVFDTests.cmake ./tools/CMakeLists.txt ./tools/lib/CMakeLists.txt +./tools/libtest/CMakeLists.txt +./tools/libtest/CMakeTests.cmake ./tools/src/CMakeLists.txt ./tools/test/CMakeLists.txt ./tools/src/h5copy/CMakeLists.txt @@ -3158,6 +3534,7 @@ ./tools/test/h5dump/CMakeTestsPBITS.cmake ./tools/test/h5dump/CMakeTestsXML.cmake ./tools/test/h5dump/CMakeTestsVDS.cmake +./tools/test/h5dump/CMakeVFDTests.cmake ./tools/src/h5format_convert/CMakeLists.txt ./tools/test/h5format_convert/CMakeLists.txt ./tools/test/h5format_convert/CMakeTests.cmake @@ -3174,6 +3551,7 @@ ./tools/src/h5repack/CMakeLists.txt ./tools/test/h5repack/CMakeLists.txt ./tools/test/h5repack/CMakeTests.cmake +./tools/test/h5repack/CMakeVFDTests.cmake ./tools/src/h5stat/CMakeLists.txt ./tools/test/h5stat/CMakeLists.txt ./tools/test/h5stat/CMakeTests.cmake @@ -3185,6 +3563,8 @@ ./tools/test/misc/vds/CMakeLists.txt ./tools/test/perform/CMakeLists.txt ./tools/test/perform/CMakeTests.cmake +./utils/CMakeLists.txt +./utils/mirror_vfd/CMakeLists.txt # CMake-specific User Scripts ./config/cmake/CTestScript.cmake @@ -3193,6 +3573,19 @@ ./config/cmake/scripts/HDF5config.cmake ./config/cmake/scripts/HDF5options.cmake +# CMake-specific Sanitizer Scripts +./config/sanitizer/code-coverage.cmake +./config/sanitizer/sanitizers.cmake +./config/sanitizer/tools.cmake +./config/sanitizer/LICENSE +./config/sanitizer/README.md + +# CMake-specific HPC Scripts +./config/cmake/scripts/HPC/sbatch-HDF5options.cmake +./config/cmake/scripts/HPC/bsub-HDF5options.cmake +./config/cmake/scripts/HPC/qsub-HDF5options.cmake +./config/cmake/scripts/HPC/raybsub-HDF5options.cmake + # Files generated by autogen ./aclocal.m4 ./bin/compile @@ -3206,6 +3599,7 @@ ./c++/examples/Makefile.in ./c++/Makefile.in ./configure +./bin/Makefile.in ./c++/src/Makefile.in ./c++/test/Makefile.in ./examples/Makefile.in @@ -3256,6 +3650,7 @@ ./testpar/Makefile.in ./tools/Makefile.in ./tools/lib/Makefile.in +./tools/libtest/Makefile.in ./tools/src/Makefile.in ./tools/src/h5copy/Makefile.in ./tools/src/h5diff/Makefile.in |