diff options
Diffstat (limited to 'MANIFEST')
| -rw-r--r-- | MANIFEST | 189 |
1 files changed, 126 insertions, 63 deletions
@@ -35,11 +35,11 @@ ./.clang-format ./.github/CODEOWNERS _DO_NOT_DISTRIBUTE_ +./.github/workflows/clang-format-fix.yml _DO_NOT_DISTRIBUTE_ ./.github/workflows/clang-format-check.yml _DO_NOT_DISTRIBUTE_ ./.github/workflows/main.yml _DO_NOT_DISTRIBUTE_ ./.github/workflows/pr-check.yml _DO_NOT_DISTRIBUTE_ -./m4/aclocal_cxx.m4 ./m4/aclocal_fc.m4 ./m4/aclocal_fc.f90 ./m4/ax_check_class.m4 @@ -62,7 +62,6 @@ ./m4/ax_try_compile_java.m4 ./m4/ax_try_run_java.m4 -./bin/COPYING ./bin/bbrelease _DO_NOT_DISTRIBUTE_ ./bin/buildhdf5 ./bin/checkapi _DO_NOT_DISTRIBUTE_ @@ -121,7 +120,6 @@ ./bin/pkgscrpts/makeInternalREADME.pl _DO_NOT_DISTRIBUTE_ ./bin/pkgscrpts/makeOuterREADME.pl _DO_NOT_DISTRIBUTE_ -./config/COPYING ./config/BlankForm ./config/apple ./config/cce-fflags @@ -137,6 +135,7 @@ ./config/cygwin ./config/ibm-aix ./config/ibm-flags +./config/intel-cxxflags ./config/intel-fflags ./config/intel-flags ./config/libhdf5.pc.in @@ -148,6 +147,7 @@ ./config/lt_vers.am ./config/Makefile.am.blank ./config/netbsd +./config/pgi-cxxflags ./config/pgi-fflags ./config/pgi-flags ./config/solaris @@ -159,7 +159,6 @@ ./config/clang-warnings/error-general ./config/clang-warnings/general ./config/clang-warnings/no-developer-general -./config/clang-warnings/noerror-general ./config/gnu-warnings/4.8-4.last ./config/gnu-warnings/4.8 ./config/gnu-warnings/4.9 @@ -173,10 +172,9 @@ ./config/gnu-warnings/cxx-4.8 ./config/gnu-warnings/cxx-4.9 ./config/gnu-warnings/cxx-5 +./config/gnu-warnings/cxx-9 ./config/gnu-warnings/cxx-error-5 ./config/gnu-warnings/cxx-error-general -./config/gnu-warnings/cxx-noerror-5 -./config/gnu-warnings/cxx-noerror-general ./config/gnu-warnings/developer-4.8 ./config/gnu-warnings/developer-7 ./config/gnu-warnings/developer-8 @@ -194,41 +192,97 @@ ./config/gnu-warnings/no-developer-4.8 ./config/gnu-warnings/no-developer-8 ./config/gnu-warnings/no-developer-general -./config/gnu-warnings/noerror-5 -./config/gnu-warnings/noerror-8 -./config/gnu-warnings/noerror-general -./config/intel-warnings/ifort-general +./config/intel-warnings/15 +./config/intel-warnings/18 +./config/intel-warnings/developer-general ./config/intel-warnings/general +./config/intel-warnings/win-developer-general +./config/intel-warnings/win-general +./config/intel-warnings/ifort-general ./config/site-specific/BlankForm +./doc/branches-explained.md ./doc/code-conventions.md - +./doc/contributing.md ./doxygen/aliases +./doxygen/CMakeLists.txt ./doxygen/Doxyfile.in -./doxygen/dox/api-compat-macros.dox +./doxygen/dox/APIVersions.dox +./doxygen/dox/About.dox +./doxygen/dox/Cookbook.dox +./doxygen/dox/DDLBNF110.dox +./doxygen/dox/DDLBNF112.dox +./doxygen/dox/FileFormatSpec.dox +./doxygen/dox/GettingStarted.dox ./doxygen/dox/H5AC_cache_config_t.dox -./doxygen/dox/H5Acreate.dox -./doxygen/dox/H5Aiterate.dox -./doxygen/dox/H5Fget_info.dox -./doxygen/dox/H5Lget_info_by_idx.dox -./doxygen/dox/H5Lget_info.dox -./doxygen/dox/H5Literate_by_name.dox -./doxygen/dox/H5Literate.dox -./doxygen/dox/H5Lvisit_by_name.dox -./doxygen/dox/H5Lvisit.dox -./doxygen/dox/H5Oget_info_by_idx.dox -./doxygen/dox/H5Oget_info_by_name.dox -./doxygen/dox/H5Oget_info.dox -./doxygen/dox/H5Ovisit_by_name.dox -./doxygen/dox/H5Ovisit.dox -./doxygen/dox/H5Sencode.dox -./doxygen/dox/mainpage.dox +./doxygen/dox/MetadataCachingInHDF5.dox +./doxygen/dox/OtherSpecs.dox +./doxygen/dox/Overview.dox +./doxygen/dox/ReferenceManual.dox +./doxygen/dox/RFC.dox +./doxygen/dox/Specifications.dox +./doxygen/dox/TechnicalNotes.dox +./doxygen/dox/api-compat-macros.dox +./doxygen/dox/maybe_metadata_reads.dox ./doxygen/dox/rm-template.dox +./doxygen/dox/cookbook/Accessibility.c +./doxygen/dox/cookbook/Accessibility.dox +./doxygen/dox/cookbook/Attributes.c +./doxygen/dox/cookbook/Attributes.dox +./doxygen/dox/cookbook/Files.c +./doxygen/dox/cookbook/Files.dox +./doxygen/dox/cookbook/Performance.dox +./doxygen/examples/FF-IH_FileGroup.gif +./doxygen/examples/FF-IH_FileObject.gif +./doxygen/examples/FileFormatSpecChunkDiagram.jpg +./doxygen/examples/H5Pset_metadata_read_attempts.c +./doxygen/examples/H5Pset_object_flush_cb.c +./doxygen/examples/H5.format.1.0.html +./doxygen/examples/H5.format.1.1.html +./doxygen/examples/H5.format.2.0.html +./doxygen/examples/H5.format.html +./doxygen/examples/H5A_examples.c +./doxygen/examples/H5D_examples.c +./doxygen/examples/H5E_examples.c ./doxygen/examples/H5Fclose.c ./doxygen/examples/H5Fcreate.c +./doxygen/examples/H5F_examples.c +./doxygen/examples/H5G_examples.c +./doxygen/examples/H5I_examples.c +./doxygen/examples/H5L_examples.c +./doxygen/examples/H5O_examples.c +./doxygen/examples/H5PL_examples.c +./doxygen/examples/H5Pget_metadata_read_attempts.1.c +./doxygen/examples/H5Pget_metadata_read_attempts.2.c +./doxygen/examples/H5Pget_metadata_read_attempts.3.c +./doxygen/examples/H5Pget_object_flush_cb.c +./doxygen/examples/H5P_examples.c +./doxygen/examples/H5R_examples.c +./doxygen/examples/H5S_examples.c +./doxygen/examples/H5T_examples.c +./doxygen/examples/H5Z_examples.c +./doxygen/examples/H5_examples.c +./doxygen/examples/ImageSpec.html +./doxygen/examples/PaletteExample1.gif +./doxygen/examples/Palettes.fm.anc.gif +./doxygen/examples/TableSpec.html +./doxygen/examples/ThreadSafeLibrary.html +./doxygen/examples/VFL.html ./doxygen/examples/hello_hdf5.c +./doxygen/hdf5_footer.html +./doxygen/hdf5_header.html +./doxygen/hdf5_navtree_hacks.js +./doxygen/hdf5doxy.css +./doxygen/hdf5doxy_layout.xml +./doxygen/img/FF-IH_FileGroup.gif +./doxygen/img/FF-IH_FileObject.gif +./doxygen/img/FileFormatSpecChunkDiagram.jpg ./doxygen/img/HDFG-logo.png +./doxygen/img/PaletteExample1.gif +./doxygen/img/Palettes.fm.anc.gif +./doxygen/img/ftv2node.png +./doxygen/img/ftv2pnode.png ./examples/Attributes.txt ./examples/Makefile.am @@ -280,7 +334,6 @@ # #------------------------------------------------------------------------------ -./fortran/COPYING ./fortran/Makefile.am ./fortran/robodoc.rc @@ -412,7 +465,6 @@ # #------------------------------------------------------------------------------ -./c++/COPYING ./c++/Makefile.am ./c++/examples/chunks.cpp @@ -543,7 +595,6 @@ # #------------------------------------------------------------------------------ -./release_docs/COPYING ./release_docs/HISTORY-1_0-1_8_0_rc3.txt ./release_docs/HISTORY-1_8_0-1_10_0.txt ./release_docs/HISTORY-1_10_0-1_12_0.txt @@ -566,7 +617,6 @@ ./src/hdf5.lnt _DO_NOT_DISTRIBUTE_ ./src/hdf5-win.lnt _DO_NOT_DISTRIBUTE_ ./src/hdf5-lin.lnt _DO_NOT_DISTRIBUTE_ -./src/COPYING ./src/H5.c ./src/H5checksum.c ./src/H5dbg.c @@ -690,6 +740,7 @@ ./src/H5EAstat.c ./src/H5EAtest.c ./src/H5ES.c +./src/H5ESdevelop.h ./src/H5ESevent.c ./src/H5ESint.c ./src/H5ESlist.c @@ -733,6 +784,7 @@ ./src/H5FD.c ./src/H5FDcore.c ./src/H5FDcore.h +./src/H5FDdevelop.h ./src/H5FDdirect.c ./src/H5FDdirect.h ./src/H5FDdrvr_module.h @@ -854,6 +906,7 @@ ./src/H5HPprivate.h ./src/H5I.c ./src/H5Idbg.c +./src/H5Idevelop.h ./src/H5Iint.c ./src/H5Imodule.h ./src/H5Ipkg.h @@ -862,7 +915,9 @@ ./src/H5Itest.c ./src/H5L.c ./src/H5Ldeprec.c +./src/H5Ldevelop.h ./src/H5Lexternal.c +./src/H5Lint.c ./src/H5Lmodule.h ./src/H5Lpkg.h ./src/H5Lprivate.h @@ -1002,8 +1057,6 @@ ./src/H5SMpkg.h ./src/H5SMprivate.h ./src/H5SMtest.c -./src/H5ST.c -./src/H5STprivate.h ./src/H5T.c ./src/H5Tarray.c ./src/H5Tbit.c @@ -1013,6 +1066,7 @@ ./src/H5Tcset.c ./src/H5Tdbg.c ./src/H5Tdeprec.c +./src/H5Tdevelop.h ./src/H5Tenum.c ./src/H5Tfields.c ./src/H5Tfixed.c @@ -1033,14 +1087,15 @@ ./src/H5Tvisit.c ./src/H5Tvlen.c ./src/H5TS.c +./src/H5TSdevelop.h ./src/H5TSprivate.h -./src/H5TSpublic.h ./src/H5UC.c ./src/H5UCprivate.h ./src/H5VL.c ./src/H5VLcallback.c ./src/H5VLconnector.h ./src/H5VLconnector_passthru.h +./src/H5VLdyn_ops.c ./src/H5VLint.c ./src/H5VLmodule.h ./src/H5VLnative.c @@ -1061,12 +1116,14 @@ ./src/H5VLpkg.h ./src/H5VLprivate.h ./src/H5VLpublic.h +./src/H5VLtest.c ./src/H5VM.c ./src/H5VMprivate.h ./src/H5WB.c ./src/H5WBprivate.h ./src/H5Z.c ./src/H5Zdeflate.c +./src/H5Zdevelop.h ./src/H5Zfletcher32.c ./src/H5Zmodule.h ./src/H5Znbit.c @@ -1081,9 +1138,9 @@ ./src/hdf5.h ./src/libhdf5.settings.in ./src/H5win32defs.h +./src/uthash.h ./test/AtomicWriterReader.txt -./test/COPYING ./test/H5srcdir.h ./test/H5srcdir_str.h.in ./test/Makefile.am @@ -1120,6 +1177,7 @@ ./test/cork.c ./test/corrupt_stab_msg.h5 ./test/cross_read.c +./test/cve_2020_10810.h5 ./test/dangle.c ./test/deflate.h5 ./test/del_many_dense_attrs.c @@ -1143,10 +1201,10 @@ ./test/external_common.h ./test/external_env.c ./test/external_fname.h -./test/family_v16_00000.h5 -./test/family_v16_00001.h5 -./test/family_v16_00002.h5 -./test/family_v16_00003.h5 +./test/family_v16-000000.h5 +./test/family_v16-000001.h5 +./test/family_v16-000002.h5 +./test/family_v16-000003.h5 ./test/farray.c ./test/fheap.c ./test/file_image.c @@ -1231,6 +1289,8 @@ ./test/ntypes.c ./test/null_vol_connector.c ./test/null_vol_connector.h +./test/null_vfd_plugin.c +./test/null_vfd_plugin.h ./test/objcopy.c ./test/objcopy_ref.c ./test/ohdr.c @@ -1320,7 +1380,6 @@ ./test/ttsafe_cancel.c ./test/ttsafe_dcreate.c ./test/ttsafe_error.c -./test/ttst.c ./test/tunicode.c ./test/tvlstr.c ./test/tvltypes.c @@ -1340,6 +1399,7 @@ ./test/vds_swmr_reader.c ./test/vds_swmr_writer.c ./test/vfd.c +./test/vfd_plugin.c ./test/vol.c ./test/vol_plugin.c @@ -1445,7 +1505,6 @@ ./test/testfiles/plist_files/strcpl_64be ./test/testfiles/plist_files/strcpl_64le -./testpar/COPYING ./testpar/Makefile.am ./testpar/t_bigio.c ./testpar/t_cache.c @@ -1479,7 +1538,6 @@ ./testpar/testphdf5.c ./testpar/testphdf5.h -./tools/COPYING ./tools/Makefile.am ./tools/src/Makefile.am ./tools/test/Makefile.am @@ -1992,6 +2050,9 @@ ./tools/testfiles/tfill.ddl ./tools/testfiles/tfilters.h5 ./tools/testfiles/tfletcher32.ddl +./tools/testfiles/tfloatsattrs.ddl +./tools/testfiles/tfloatsattrs.h5 +./tools/testfiles/tfloatsattrs.wddl ./tools/testfiles/tfvalues.h5 ./tools/testfiles/tgroup-1.ddl ./tools/testfiles/tgroup-2.ddl @@ -2031,6 +2092,8 @@ ./tools/testfiles/tlarge_objname.h5 ./tools/testfiles/tldouble.ddl ./tools/testfiles/tldouble.h5 +./tools/testfiles/tldouble_scalar.ddl +./tools/testfiles/tldouble_scalar.h5 ./tools/testfiles/tlonglinks.ddl ./tools/testfiles/tlonglinks.h5 ./tools/testfiles/tloop-1.ddl @@ -2137,6 +2200,8 @@ ./tools/testfiles/twithddl.exp ./tools/testfiles/twithddlfile.ddl ./tools/testfiles/twithddlfile.exp +./tools/testfiles/tCVE_2018_11206_fill_old.h5 +./tools/testfiles/tCVE_2018_11206_fill_new.h5 # h5dump test error files ./tools/test/h5dump/errfiles/filter_fail.err @@ -2801,7 +2866,8 @@ ./tools/test/h5repack/testfiles/h5repack_layout.h5-plugin_test.ddl ./tools/test/h5repack/testfiles/h5repack_layout.h5-plugin_version_test.ddl ./tools/test/h5repack/testfiles/h5repack_layout.h5-plugin_zero.ddl -./tools/test/h5repack/testfiles/h5repack_HDFFV-10590_CVE-2018-17432.h5 +./tools/test/h5repack/testfiles/h5repack_CVE-2018-17432.h5 +./tools/test/h5repack/testfiles/h5repack_CVE-2018-14460.h5 ./tools/test/h5repack/testfiles/GS.h5repack_paged_nopersist.h5.ddl ./tools/test/h5repack/testfiles/S.h5repack_fsm_aggr_persist.h5.ddl ./tools/test/h5repack/testfiles/SP.h5repack_fsm_aggr_nopersist.h5.ddl @@ -2896,7 +2962,15 @@ ./tools/testfiles/h5mkgrp_single_p.ls ./tools/testfiles/h5mkgrp_single_l.ls -./tools/test/perform/COPYING +./tools/src/h5perf/Makefile.am +./tools/src/h5perf/perf.c +./tools/src/h5perf/pio_engine.c +./tools/src/h5perf/pio_perf.c +./tools/src/h5perf/pio_perf.h +./tools/src/h5perf/sio_engine.c +./tools/src/h5perf/sio_perf.c +./tools/src/h5perf/sio_perf.h + ./tools/test/perform/Makefile.am ./tools/test/perform/build_h5perf_alone.sh ./tools/test/perform/build_h5perf_serial_alone.sh @@ -2906,22 +2980,14 @@ ./tools/test/perform/gen_report.pl ./tools/test/perform/iopipe.c ./tools/test/perform/overhead.c -./tools/test/perform/perf.c ./tools/test/perform/perf_meta.c -./tools/test/perform/pio_engine.c -./tools/test/perform/pio_perf.c -./tools/test/perform/pio_perf.h ./tools/test/perform/pio_standalone.c ./tools/test/perform/pio_standalone.h -./tools/test/perform/sio_engine.c -./tools/test/perform/sio_perf.c -./tools/test/perform/sio_perf.h ./tools/test/perform/sio_standalone.c ./tools/test/perform/sio_standalone.h ./tools/test/perform/zip_perf.c # Utils directory -./utils/COPYING ./utils/Makefile.am # Mirror VFD utilities @@ -2933,7 +2999,6 @@ ./utils/mirror_vfd/mirror_writer.c # high level libraries -./hl/COPYING ./hl/Makefile.am ./hl/examples/Makefile.am ./hl/examples/ex_ds1.c @@ -2960,7 +3025,6 @@ ./hl/examples/ptExampleFL.c ./hl/examples/run-hl-ex.sh ./hl/examples/run-hlc-ex.sh.in -./hl/src/COPYING ./hl/src/Makefile.am ./hl/src/H5DO.c ./hl/src/H5DOpublic.h @@ -2989,7 +3053,6 @@ ./hl/src/H5TBprivate.h ./hl/src/H5TBpublic.h ./hl/src/hdf5_hl.h -./hl/test/COPYING ./hl/test/H5srcdir_str.h.in ./hl/test/Makefile.am ./hl/test/dsdata.txt @@ -3025,7 +3088,6 @@ ./hl/test/usa.wri # tools -./hl/tools/COPYING ./hl/tools/Makefile.am ./hl/tools/gif2h5/Makefile.am ./hl/tools/gif2h5/decompress.c @@ -3090,7 +3152,6 @@ ./hl/tools/testfiles/w-help1.ddl # hl fortran -./hl/fortran/COPYING ./hl/fortran/Makefile.am ./hl/fortran/examples/Makefile.am ./hl/fortran/examples/run-hlfortran-ex.sh.in @@ -3115,7 +3176,6 @@ ./hl/fortran/test/tsttable.F90 # hl c++ -./hl/c++/COPYING ./hl/c++/Makefile.am ./hl/c++/examples/Makefile.am ./hl/c++/examples/ptExampleFL.cpp @@ -3128,7 +3188,6 @@ ./hl/c++/test/Makefile.am # java -./java/COPYING ./java/Makefile.am ./java/CMakeLists.txt @@ -3409,9 +3468,11 @@ ./java/test/junit.sh.in ./java/test/testfiles/JUnit-TestH5.txt ./java/test/testfiles/JUnit-TestH5A.txt +./java/test/testfiles/JUnit-TestH5Arw.txt ./java/test/testfiles/JUnit-TestH5Dparams.txt ./java/test/testfiles/JUnit-TestH5D.txt ./java/test/testfiles/JUnit-TestH5Dplist.txt +./java/test/testfiles/JUnit-TestH5Drw.txt ./java/test/testfiles/JUnit-TestH5E.txt ./java/test/testfiles/JUnit-TestH5Edefault.txt ./java/test/testfiles/JUnit-TestH5Eparams.txt @@ -3450,9 +3511,11 @@ ./java/test/h5ex_g_iterate.orig ./java/test/TestH5.java ./java/test/TestH5A.java +./java/test/TestH5Arw.java ./java/test/TestH5Dparams.java ./java/test/TestH5D.java ./java/test/TestH5Dplist.java +./java/test/TestH5Drw.java ./java/test/TestH5E.java ./java/test/TestH5Edefault.java ./java/test/TestH5Eparams.java @@ -3514,7 +3577,6 @@ ./config/cmake/CTestCustom.cmake ./config/cmake/fileCompareTest.cmake ./config/cmake/FindHDFS.cmake -./config/cmake/H5cxx_config.h.in ./config/cmake/H5pubconf.h.in ./config/cmake/hdf5-config.cmake.in ./config/cmake/hdf5-config-version.cmake.in @@ -3525,6 +3587,7 @@ ./config/cmake/HDF5PluginMacros.cmake ./config/cmake/HDF5PluginCache.cmake ./config/cmake/HDF5UseFortran.cmake +./config/cmake/javaTargets.cmake.in ./config/cmake/jrunTest.cmake ./config/cmake/jvolTest.cmake ./config/cmake/libh5cc.in @@ -3549,11 +3612,9 @@ ./config/cmake_ext_mod/hdf.bmp ./config/cmake_ext_mod/hdf.icns ./config/cmake_ext_mod/hdf.ico -./config/cmake_ext_mod/HDFCXXTests.cpp ./config/cmake_ext_mod/HDFLibMacros.cmake ./config/cmake_ext_mod/HDFMacros.cmake ./config/cmake_ext_mod/HDFTests.c -./config/cmake_ext_mod/HDFUseCXX.cmake ./config/cmake_ext_mod/HDFUseFortran.cmake ./config/cmake_ext_mod/NSIS.InstallOptions.ini.in ./config/cmake_ext_mod/NSIS.template.in @@ -3665,6 +3726,7 @@ ./tools/test/h5stat/CMakeLists.txt ./tools/test/h5stat/CMakeTests.cmake ./tools/src/misc/CMakeLists.txt +./tools/src/h5perf/CMakeLists.txt ./tools/test/misc/CMakeLists.txt ./tools/test/misc/CMakeTestsClear.cmake ./tools/test/misc/CMakeTestsMkgrp.cmake @@ -3769,6 +3831,7 @@ ./tools/src/h5import/Makefile.in ./tools/src/h5jam/Makefile.in ./tools/src/h5ls/Makefile.in +./tools/src/h5perf/Makefile.in ./tools/src/h5repack/Makefile.in ./tools/src/h5stat/Makefile.in ./tools/src/misc/Makefile.in |