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-rw-r--r--bin/Makefile.am57
-rw-r--r--bin/h5cc.in399
-rw-r--r--bin/h5redeploy.in216
3 files changed, 672 insertions, 0 deletions
diff --git a/bin/Makefile.am b/bin/Makefile.am
new file mode 100644
index 0000000..a39b695
--- /dev/null
+++ b/bin/Makefile.am
@@ -0,0 +1,57 @@
+#
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the COPYING file, which can be found at the root of the source code
+# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# If you do not have access to either file, you may request a copy from
+# help@hdfgroup.org.
+##
+## Makefile.am
+## Run automake to generate a Makefile.in from this file.
+#
+# HDF5 Library Makefile(.in)
+#
+
+include $(top_srcdir)/config/commence.am
+
+# Include src directory
+AM_CPPFLAGS+=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
+
+# These are our main targets
+bin_SCRIPTS=h5redeploy
+
+# Tell automake to clean h5redeploy script
+CLEANFILES=h5redeploy
+
+# These were generated by configure. Remove them only when distclean.
+DISTCLEANFILES=h5cc
+
+# All programs rely on hdf5 library and h5tools library
+LDADD=$(LIBH5TOOLS) $(LIBHDF5)
+
+# How to build h5redeploy script
+h5redeploy: h5redeploy.in
+ @cp $(srcdir)/$@.in $@
+
+# h5cc needs custom install and uninstall rules, since it may be
+# named h5pcc if hdf5 is being built in parallel mode.
+if BUILD_PARALLEL_CONDITIONAL
+ H5CC_NAME=h5pcc
+else
+ H5CC_NAME=h5cc
+endif
+
+$(DESTDIR)$(bindir):
+ echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \
+ $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1;
+
+install-exec-local: $(DESTDIR)$(bindir)
+ @$(INSTALL) h5cc $(DESTDIR)$(bindir)/$(H5CC_NAME)
+uninstall-local:
+ @$(RM) $(DESTDIR)$(bindir)/$(H5CC_NAME)
+
+include $(top_srcdir)/config/conclude.am
diff --git a/bin/h5cc.in b/bin/h5cc.in
new file mode 100644
index 0000000..9c4e3ca
--- /dev/null
+++ b/bin/h5cc.in
@@ -0,0 +1,399 @@
+#! /bin/sh
+##
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the COPYING file, which can be found at the root of the source code
+# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# If you do not have access to either file, you may request a copy from
+# help@hdfgroup.org.
+##
+
+# This tool is adapted from the mpicc command of the MPICH Software.
+
+############################################################################
+## ##
+## Things You May Have to Modify: ##
+## ##
+## If the following paths don't point to the place were HDF5 is installed ##
+## on your system (i.e., you received a binary distribution or moved the ##
+## files from the originally installed directory to another directory) ##
+## then modify them accordingly to represent the new paths. ##
+## ##
+############################################################################
+prefix="@prefix@"
+exec_prefix="@exec_prefix@"
+libdir="@libdir@"
+includedir="@includedir@"
+HL="@HL@"
+
+############################################################################
+## ##
+## Things You Can Modify to Override HDF5 Library Build Components: ##
+## ##
+## (Advanced usage - know what you're doing - you're on your own here.) ##
+## The four variables below can be used to insert paths and flags in ##
+## CPPFLAGS, CFLAGS, LDFLAGS, or LIBS in the h5cc compile line: ##
+## $CLINKER $H5BLD_CPPFLAGS $CPPFLAGS $H5BLD_CFLAGS $CFLAGS $LDFLAGS ##
+## $LIBS $clibpath $link_objs $link_args $shared_link ##
+## ##
+## These settings can be overriden by setting HDF5_CFLAGS, ##
+## HDF5_CPPFLAGS, HDF5_LDFLAGS, or HDF5_LIBS in the environment. ##
+## ##
+############################################################################
+CFLAGSBASE=""
+CPPFLAGSBASE=""
+LDFLAGSBASE=""
+LIBSBASE=""
+
+############################################################################
+## ##
+## You shouldn't have to modify anything below this line. ##
+## ##
+############################################################################
+
+# Constants definitions
+EXIT_SUCCESS=0
+EXIT_FAILURE=1
+
+host_os="@host_os@"
+
+prog_name="`basename $0`"
+
+allargs=""
+compile_args=""
+libraries=""
+link_args=""
+link_objs=""
+clibpath=""
+
+do_link="yes"
+do_compile="no"
+dash_o="no"
+dash_c="no"
+get_output_file="no"
+
+SHOW="eval"
+CCBASE="@CC@"
+CLINKERBASE="@CC@"
+
+# CFLAGS, CPPFLAGS and LDFLAGS are reserved for use by the script user.
+# FLAGS brought from the hdf5 build are put in H5BLD_*FLAGS.
+
+# User's CPPFLAGS and CFLAGS come after their H5BLD counterparts. User's
+# LDFLAGS come just before clibpath, user's LIBS come after $link_objs and
+# before the hdf5 libraries in $link_args, followed by any external library
+# paths and libraries from AM_LDFLAGS, LDFLAGS, AM_LIBS or LIBS carried in
+# from the hdf5 build. The order of the flags is intended to give precedence
+# to the user's flags.
+H5BLD_CFLAGS="@AM_CFLAGS@ @CFLAGS@"
+H5BLD_CPPFLAGS="@AM_CPPFLAGS@ @CPPFLAGS@"
+H5BLD_LDFLAGS="@AM_LDFLAGS@ @LDFLAGS@"
+H5BLD_LIBS="@LIBS@"
+
+CC="${HDF5_CC:-$CCBASE}"
+CLINKER="${HDF5_CLINKER:-$CLINKERBASE}"
+CFLAGS="${HDF5_CFLAGS:-$CFLAGSBASE}"
+CPPFLAGS="${HDF5_CPPFLAGS:-$CPPFLAGSBASE}"
+LDFLAGS="${HDF5_LDFLAGS:-$LDFLAGSBASE}"
+LIBS="${HDF5_LIBS:-$LIBSBASE}"
+
+# If a static library is available, the default will be to use it. If the only
+# available library is shared, it will be used by default. The user can
+# override either default, although choosing an unavailable library will result
+# in link errors.
+STATIC_AVAILABLE="@enable_static@"
+if test "${STATIC_AVAILABLE}" = "yes"; then
+ USE_SHARED_LIB="${HDF5_USE_SHLIB:-no}"
+else
+ USE_SHARED_LIB="${HDF5_USE_SHLIB:-yes}"
+fi
+
+
+usage() {
+ # A wonderfully informative "usage" message.
+ echo "usage: $prog_name [OPTIONS] <compile line>"
+ echo " OPTIONS:"
+ echo " -help This help message."
+ echo " -echo Show all the shell commands executed"
+ echo " -prefix=DIR Prefix directory to find HDF5 lib/ and include/"
+ echo " subdirectories [default: $prefix]"
+ # A wonderfully informative "usage" message.
+ echo "usage: $prog_name [OPTIONS] <compile line>"
+ echo " OPTIONS:"
+ echo " -help This help message."
+ echo " -echo Show all the shell commands executed"
+ echo " -prefix=DIR Prefix directory to find HDF5 lib/ and include/"
+ echo " subdirectories [default: $prefix]"
+ echo " -show Show the commands without executing them"
+ echo " -showconfig Show the HDF5 library configuration summary"
+ echo " -shlib Compile with shared HDF5 libraries [default for hdf5 built"
+ echo " without static libraries]"
+ echo " -noshlib Compile with static HDF5 libraries [default for hdf5 built"
+ echo " with static libraries]"
+ echo " "
+ echo " <compile line> - the normal compile line options for your compiler."
+ echo " $prog_name uses the same compiler you used to compile"
+ echo " HDF5. Check with your compiler's man pages for more"
+ echo " information on which options are needed."
+ echo " "
+ echo " You can override the compiler, linker, and whether or not to use static"
+ echo " or shared libraries to compile your program by setting the following"
+ echo " environment variables accordingly:"
+ echo " "
+ echo " HDF5_CC - use a different C compiler"
+ echo " HDF5_CLINKER - use a different linker"
+ echo " HDF5_USE_SHLIB=[yes|no] - use shared or static version of the HDF5 library"
+ echo " [default: no except when built with only"
+ echo " shared libraries]"
+ echo " "
+ echo " You can also add or change paths and flags to the compile line using"
+ echo " the following environment varibles or by assigning them to their counterparts"
+ echo " in the 'Things You Can Modify to Override...'" section of $prog_name
+ echo " "
+ echo " Variable Current value to be replaced"
+ echo " HDF5_CPPFLAGS \"$CPPFLAGSBASE\""
+ echo " HDF5_CFLAGS \"$CFLAGSBASE\""
+ echo " HDF5_LDFLAGS \"$LDFLAGSBASE\""
+ echo " HDF5_LIBS \"$LIBSBASE\""
+ echo " "
+ echo " Note that adding library paths to HDF5_LDFLAGS where another hdf5 version"
+ echo " is located may link your program with that other hdf5 library version."
+ echo " "
+ exit $EXIT_FAILURE
+}
+
+# Show the configuration summary of the library recorded in the
+# libhdf5.settings file reside in the lib directory.
+showconfigure()
+{
+ cat ${libdir}/libhdf5.settings
+ status=$?
+}
+
+# Main
+status=$EXIT_SUCCESS
+
+if test "$#" = "0"; then
+ # No parameters specified, issue usage statement and exit.
+ usage
+fi
+
+case "$CC" in
+ gcc)
+ kind="gcc"
+ ;;
+ mpicc|mpcc|mpicc_r)
+ # Is this gcc masquarading as an MPI compiler?
+ if test "`${CC} -v 2>&1 | sed -n 2p | cut -c1-3`" = "gcc"; then
+ kind="gcc"
+ else
+ # Nope
+ kind="$host_os"
+ fi
+ ;;
+ *)
+ kind="$host_os"
+ ;;
+esac
+
+for arg in $@ ; do
+ if test "x$get_output_file" = "xyes"; then
+ link_args="$link_args $arg"
+ output_file="$arg"
+ get_output_file="no"
+ continue
+ fi
+
+ case "$arg" in
+ -c)
+ allargs="$allargs $arg"
+ compile_args="$compile_args $arg"
+
+ if test "x$do_link" = "xyes" -a -n "$output_file"; then
+ compile_args="$compile_args -o $output_file"
+ fi
+
+ do_link="no"
+ dash_c="yes"
+ ;;
+ -o)
+ allargs="$allargs $arg"
+ dash_o="yes"
+
+ if test "x$dash_c" = "xyes"; then
+ compile_args="$compile_args $arg"
+ else
+ link_args="$link_args $arg"
+ do_link="yes"
+ get_output_file="yes"
+ fi
+ ;;
+ -E|-M|-MT)
+ allargs="$allargs $arg"
+ compile_args="$compile_args $arg"
+ dash_c="yes"
+ do_link="no"
+ ;;
+ -l*)
+ libraries=" $libraries $arg "
+ allargs="$allargs $arg"
+ ;;
+ -prefix=*)
+ prefix="`expr "$arg" : '-prefix=\(.*\)'`"
+ ;;
+ -echo)
+ set -x
+ ;;
+ -show)
+ SHOW="echo"
+ ;;
+ -showconfig)
+ showconfigure
+ exit $status
+ ;;
+ -shlib)
+ USE_SHARED_LIB="yes"
+ ;;
+ -noshlib)
+ USE_SHARED_LIB="no"
+ ;;
+ -help)
+ usage
+ ;;
+ *\"*)
+ qarg="'"$arg"'"
+ allargs="$allargs $qarg"
+ ;;
+ *\'*)
+ qarg='\"'"$arg"'\"'
+ allargs="$allargs $qarg"
+ ;;
+ *)
+ allargs="$allargs $qarg"
+
+ if test -s "$arg"; then
+ ext=`expr "$arg" : '.*\(\..*\)'`
+
+ if test "x$ext" = "x.c"; then
+ do_compile="yes"
+ compile_args="$compile_args $arg"
+ fname=`basename $arg .c`
+ link_objs="$link_objs $fname.o"
+ elif test "x$ext" = "x.o"; then
+ if test "x$dash_c" = "xyes"; then
+ compile_args="$compile_args $arg"
+ else
+ do_link="yes"
+ link_objs="$link_objs $arg"
+ fi
+ elif test "x$ext" = "x.a"; then
+ # This is an archive that we're linking in
+ libraries=" $libraries $arg "
+ else
+ compile_args="$compile_args $arg"
+ link_args="$link_args $arg"
+ fi
+ else
+ compile_args="$compile_args $arg"
+ link_args="$link_args $arg"
+ fi
+ ;;
+ esac
+done
+
+if test "$dash_c" = "yes" -a "$do_compile" = no -a "$do_link" = no ; then
+ # -c was specified. Force do_compile on.
+ do_compile=yes
+fi
+
+if test "x$do_compile" = "xyes"; then
+ if test "x$dash_c" != "xyes"; then
+ compile_args="-c $compile_args"
+ fi
+
+ $SHOW $CC -I$includedir $H5BLD_CPPFLAGS $CPPFLAGS $H5BLD_CFLAGS $CFLAGS $compile_args
+ status=$?
+
+ if test "$status" != "0"; then
+ exit $status
+ fi
+fi
+
+if test "x$do_link" = "xyes"; then
+ shared_link=""
+# conditionnaly link with the hl library
+ if test "X$HL" = "Xhl"; then
+ libraries=" $libraries -lhdf5_hl -lhdf5 "
+ else
+ libraries=" $libraries -lhdf5 "
+ fi
+ link_args="$link_args -L${libdir}"
+
+ case "$kind" in
+ gcc|linux*)
+ # MacOS X doesn't support the "-Wl,-rpath -Wl," style of linker flags.
+ # It appears to want none of them specified.
+ case "$host_os" in
+ darwin*) flag="" ;;
+ *) flag="-Wl,-rpath -Wl," ;;
+ esac
+ ;;
+ hpux*) flag="-Wl,+b -Wl," ;;
+ freebsd*|solaris*) flag="-R" ;;
+ rs6000*|aix*) flag="-L" ;;
+ sgi) flag="-rpath " ;;
+ *) flag="" ;;
+ esac
+
+ if test -n "$flag"; then
+ shared_link="${flag}${libdir}"
+ fi
+
+ if test "x$USE_SHARED_LIB" != "xyes"; then
+ # The "-lhdf5" & "-lhdf5_hl" flags are in here already...This is a static
+ # compile though, so change it to the static version (.a) of the library.
+ new_libraries=""
+ for lib in $libraries; do
+ case "$lib" in
+ -lhdf5)
+ new_libraries="$new_libraries ${libdir}/libhdf5.a"
+ ;;
+ -lhdf5_hl)
+ new_libraries="$new_libraries ${libdir}/libhdf5_hl.a"
+ ;;
+ *)
+ new_libraries="$new_libraries $lib"
+ ;;
+ esac
+ done
+ libraries="$new_libraries"
+ fi
+
+ for lib in $libraries; do
+ if echo $link_args | grep " $lib " > /dev/null ||
+ echo $link_args | grep " $lib$" > /dev/null; then
+ :
+ else
+ link_args="$link_args $lib "
+ fi
+ done
+
+ # The LIBS are just a bunch of -l* libraries necessary for the HDF5
+ # module. It's okay if they're included twice in the compile line.
+ link_args="$link_args $H5BLD_LDFLAGS $H5BLD_LIBS"
+
+ # User's CPPFLAGS and CFLAGS come after their H5BLD counterparts. User's
+ # LDFLAGS come just before clibpath, user's LIBS come after $link_objs and
+ # before the hdf5 libraries in $link_args, followed by any external library
+ # paths and libraries from AM_LDFLAGS, LDFLAGS, AM_LIBS or LIBS carried in
+ # from the hdf5 build. The order of the flags is intended to give precedence
+ # to the user's flags.
+ $SHOW $CLINKER $H5BLD_CPPFLAGS $CPPFLAGS $H5BLD_CFLAGS $CFLAGS $LDFLAGS $clibpath $link_objs $LIBS $link_args $shared_link
+ status=$?
+fi
+
+exit $status
diff --git a/bin/h5redeploy.in b/bin/h5redeploy.in
new file mode 100644
index 0000000..242459a
--- /dev/null
+++ b/bin/h5redeploy.in
@@ -0,0 +1,216 @@
+#! /bin/sh
+#
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the COPYING file, which can be found at the root of the source code
+# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# If you do not have access to either file, you may request a copy from
+# help@hdfgroup.org.
+#
+
+## Update HDF5 compiler tools after the HDF5 software has been installed ##
+## in a new location. ##
+## For help page, use "h5redeploy -help" ##
+## ##
+
+# Constants definitions
+EXIT_SUCCESS=0
+EXIT_FAILURE=1
+
+# Function definitions
+
+# show help page
+usage() {
+ # A wonderfully informative "usage" message.
+ echo "usage: $prog_name [OPTIONS]"
+ echo " OPTIONS:"
+ echo " -help|help This help message"
+ echo " -echo Show all the shell commands executed"
+ echo " -force No prompt, just do it"
+ echo " -prefix=DIR New directory to find HDF5 lib/ and include/"
+ echo " subdirectories [default: current directory]"
+ echo " -exec-prefix=DIR New directory to find HDF5 lib/"
+ echo " subdirectory [default: <prefix>]"
+ echo " -libdir=DIR New directory for the HDF5 lib directory"
+ echo " [default: <exec-prefix>/lib]"
+ echo " -includedir=DIR New directory for the HDF5 header files"
+ echo " [default: <prefix>/include]"
+ echo " -tool=TOOL Tool to update. TOOL must be in the current"
+ echo " directory and writable. [default: $h5tools]"
+ echo " -show Show the commands without executing them"
+ echo " "
+ exit $EXIT_FAILURE
+}
+
+# display variable values
+dump_vars(){
+ echo "====Showing all variable values====="
+ echo prefix=$prefix
+ echo h5tools=$h5tools
+ echo "====End Showing====="
+}
+
+# show actions to be taken
+show_action()
+{
+ echo "Update the following tools because they are now installed at a new directory"
+ for t in $foundtools; do
+ echo "${t}:"
+ echo " current setting=`sed -e '/^prefix=/s/prefix=//p' -e d $t`"
+ echo " new setting="\""$prefix"\"
+ done
+}
+
+
+# Report Error message
+ERROR()
+{
+ echo "***ERROR***"
+ echo "$1"
+}
+
+# Main
+#
+############################################################################
+## Installation directories: ##
+## prefix architecture-independent files. ##
+## exec_prefix architecture-dependent files, default is <prefix>. ##
+## libdir libraries, default is <exec_prefix>/lib. ##
+## includedir header files, default is <prefix/include>. ##
+## Not used here: ##
+## bindir executables, <exec_prefix/bin>. ##
+############################################################################
+# Initialization
+h5tools="h5cc h5pcc h5fc h5pfc h5c++" # possible hdf5 tools
+foundtools= # tools found and will be modified
+fmode= # force mode, default is off
+prefix=
+exec_prefix=
+libdir=
+includedir=
+
+# Parse options
+for arg in $@ ; do
+ case "$arg" in
+ -prefix=*)
+ prefix="`echo $arg | cut -f2 -d=`"
+ ;;
+ -exec-prefix=*)
+ exec_prefix="`echo $arg | cut -f2 -d=`"
+ ;;
+ -libdir=*)
+ libdir="`echo $arg | cut -f2 -d=`"
+ ;;
+ -includedir=*)
+ includedir="`echo $arg | cut -f2 -d=`"
+ ;;
+ -echo)
+ set -x
+ ;;
+ -show)
+ SHOW="echo"
+ ;;
+ -tool=*)
+ h5tools="`echo $arg | cut -f2 -d=`"
+ ;;
+ -help|help)
+ usage
+ ;;
+ -force)
+ fmode=yes
+ ;;
+ *)
+ ERROR "Unknown Option($arg)"
+ usage
+ exit $EXIT_FAILURE
+ ;;
+ esac
+done
+
+# Set to default value, one above where i am, if not given by user
+if [ -z "$prefix" ]; then
+ prefix=`(cd ..;pwd)`
+fi
+if [ -z "$exec_prefix" ]; then
+ exec_prefix='${prefix}' # use single quotes to prevent expansion of $
+fi
+if [ -z "$libdir" ]; then
+ libdir='${exec_prefix}'/lib # use single quotes to prevent expansion of $
+fi
+if [ -z "$includedir" ]; then
+ includedir='${prefix}'/include # use single quotes to prevent expansion of $
+fi
+
+for x in $h5tools; do
+ if [ -f $x ]; then
+ foundtools="$foundtools $x"
+ if [ ! -w $x ]; then
+ ERROR "h5tool($x) is not writable"
+ exit $EXIT_FAILURE
+ fi
+ fi
+done
+
+if [ -z "$foundtools" ]; then
+ ERROR "found no tools to modify"
+ exit $EXIT_FAILURE
+fi
+
+# Show actions to be taken and get consent
+show_action
+# Ask confirmation unless fmode is on
+if [ x-$fmode = x- ]; then
+ echo "Continue? (yes/no)"
+ read ansx
+ ans=`echo $ansx | tr "[A-Z]" "[a-z]"`
+ if [ x-$ans != x-yes ]; then
+ echo ABORT. No tools changed.
+ exit $EXIT_FAILURE
+ fi
+fi
+
+
+# Create the update commands
+CMDFILE=/tmp/h5redeploy.$$
+touch $CMDFILE
+chmod 0600 $CMDFILE
+echo "/^prefix=/c" >> $CMDFILE
+echo prefix=\""$prefix"\" >> $CMDFILE
+echo . >> $CMDFILE
+echo "/^exec_prefix=/c" >> $CMDFILE
+echo exec_prefix=\""$exec_prefix"\" >> $CMDFILE
+echo . >> $CMDFILE
+echo "/^libdir=/c" >> $CMDFILE
+echo libdir=\""$libdir"\" >> $CMDFILE
+echo . >> $CMDFILE
+echo "/^includedir=/c" >> $CMDFILE
+echo includedir=\""$includedir"\" >> $CMDFILE
+echo . >> $CMDFILE
+(echo w; echo q) >> $CMDFILE
+
+
+# Update them
+if [ "$SHOW" = "echo" ]; then
+ echo "===Update commands are:===="
+ cat $CMDFILE
+ echo "===End Update commands====="
+fi
+
+for t in $foundtools; do
+ echo Update $t ...
+ COMMAND="ed - $t"
+ if [ "$SHOW" = "echo" ]; then
+ echo $COMMAND
+ else
+ $COMMAND < $CMDFILE
+ fi
+done
+
+
+# Cleanup
+rm -f $CMDFILE
+exit $EXIT_SUCCESS