diff options
Diffstat (limited to 'c++/examples/writedata.cpp')
| -rw-r--r-- | c++/examples/writedata.cpp | 528 |
1 files changed, 263 insertions, 265 deletions
diff --git a/c++/examples/writedata.cpp b/c++/examples/writedata.cpp index 496c5d1..f8a1cea 100644 --- a/c++/examples/writedata.cpp +++ b/c++/examples/writedata.cpp @@ -5,12 +5,10 @@ * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * - * the files COPYING and Copyright.html. COPYING can be found at the root * - * of the source code distribution tree; Copyright.html can be found at the * - * root level of an installed copy of the electronic HDF5 document set and * - * is linked from the top-level documents page. It can also be found at * - * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * - * access to either file, you may request a copy from help@hdfgroup.org. * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* @@ -44,19 +42,19 @@ const H5std_string FILE_NAME( "Select.h5" ); const H5std_string DATASET_NAME( "Matrix in file" ); -const int MSPACE1_RANK = 1; // Rank of the first dataset in memory +const int MSPACE1_RANK = 1; // Rank of the first dataset in memory const int MSPACE1_DIM = 50; // Dataset size in memory -const int MSPACE2_RANK = 1; // Rank of the second dataset in memory -const int MSPACE2_DIM = 4; // Dataset size in memory -const int FSPACE_RANK = 2; // Dataset rank as it is stored in the file -const int FSPACE_DIM1 = 8; // Dimension sizes of the dataset as it is -const int FSPACE_DIM2 = 12; // stored in the file -const int MSPACE_RANK = 2; // Rank of the first dataset in memory -const int MSPACE_DIM1 = 8; // We will read dataset back from the file -const int MSPACE_DIM2 = 9; // to the dataset in memory with these - // dataspace parameters -const int NPOINTS = 4; // Number of points that will be selected - // and overwritten +const int MSPACE2_RANK = 1; // Rank of the second dataset in memory +const int MSPACE2_DIM = 4; // Dataset size in memory +const int FSPACE_RANK = 2; // Dataset rank as it is stored in the file +const int FSPACE_DIM1 = 8; // Dimension sizes of the dataset as it is +const int FSPACE_DIM2 = 12; // stored in the file +const int MSPACE_RANK = 2; // Rank of the first dataset in memory +const int MSPACE_DIM1 = 8; // We will read dataset back from the file +const int MSPACE_DIM2 = 9; // to the dataset in memory with these + // dataspace parameters +const int NPOINTS = 4; // Number of points that will be selected + // and overwritten int main (void) { @@ -67,271 +65,271 @@ int main (void) */ try { - /* - * Turn off the auto-printing when failure occurs so that we can - * handle the errors appropriately - */ - Exception::dontPrint(); - - /* - * Create a file. - */ - H5File* file = new H5File( FILE_NAME, H5F_ACC_TRUNC ); - - /* - * Create property list for a dataset and set up fill values. - */ - int fillvalue = 0; /* Fill value for the dataset */ - DSetCreatPropList plist; - plist.setFillValue(PredType::NATIVE_INT, &fillvalue); - - /* - * Create dataspace for the dataset in the file. - */ - hsize_t fdim[] = {FSPACE_DIM1, FSPACE_DIM2}; // dim sizes of ds (on disk) - DataSpace fspace( FSPACE_RANK, fdim ); - - /* - * Create dataset and write it into the file. - */ - DataSet* dataset = new DataSet(file->createDataSet( - DATASET_NAME, PredType::NATIVE_INT, fspace, plist)); - - /* - * Select hyperslab for the dataset in the file, using 3x2 blocks, - * (4,3) stride and (2,4) count starting at the position (0,1). - */ - hsize_t start[2]; // Start of hyperslab - hsize_t stride[2]; // Stride of hyperslab - hsize_t count[2]; // Block count - hsize_t block[2]; // Block sizes - start[0] = 0; start[1] = 1; - stride[0] = 4; stride[1] = 3; - count[0] = 2; count[1] = 4; - block[0] = 3; block[1] = 2; - fspace.selectHyperslab( H5S_SELECT_SET, count, start, stride, block); - - /* - * Create dataspace for the first dataset. - */ - hsize_t dim1[] = {MSPACE1_DIM}; /* Dimension size of the first dataset - (in memory) */ - DataSpace mspace1( MSPACE1_RANK, dim1 ); - - /* - * Select hyperslab. - * We will use 48 elements of the vector buffer starting at the - * second element. Selected elements are 1 2 3 . . . 48 - */ - start[0] = 1; - stride[0] = 1; - count[0] = 48; - block[0] = 1; - mspace1.selectHyperslab( H5S_SELECT_SET, count, start, stride, block); - - /* - * Write selection from the vector buffer to the dataset in the file. - * - * File dataset should look like this: - * 0 1 2 0 3 4 0 5 6 0 7 8 - * 0 9 10 0 11 12 0 13 14 0 15 16 - * 0 17 18 0 19 20 0 21 22 0 23 24 - * 0 0 0 0 0 0 0 0 0 0 0 0 - * 0 25 26 0 27 28 0 29 30 0 31 32 - * 0 33 34 0 35 36 0 37 38 0 39 40 - * 0 41 42 0 43 44 0 45 46 0 47 48 - * 0 0 0 0 0 0 0 0 0 0 0 0 - */ - int vector[MSPACE1_DIM]; // vector buffer for dset - - /* - * Buffer initialization. - */ - vector[0] = vector[MSPACE1_DIM - 1] = -1; - for (i = 1; i < MSPACE1_DIM - 1; i++) - vector[i] = i; - - dataset->write( vector, PredType::NATIVE_INT, mspace1, fspace ); - - /* - * Reset the selection for the file dataspace fid. - */ - fspace.selectNone(); - - /* - * Create dataspace for the second dataset. - */ - hsize_t dim2[] = {MSPACE2_DIM}; /* Dimension size of the second dataset - (in memory */ - DataSpace mspace2( MSPACE2_RANK, dim2 ); - - /* - * Select sequence of NPOINTS points in the file dataspace. - */ - hsize_t coord[NPOINTS][FSPACE_RANK]; /* Array to store selected points - from the file dataspace */ - coord[0][0] = 0; coord[0][1] = 0; - coord[1][0] = 3; coord[1][1] = 3; - coord[2][0] = 3; coord[2][1] = 5; - coord[3][0] = 5; coord[3][1] = 6; - - fspace.selectElements( H5S_SELECT_SET, NPOINTS, (const hsize_t *)coord); - - /* - * Write new selection of points to the dataset. - */ - int values[] = {53, 59, 61, 67}; /* New values to be written */ - dataset->write( values, PredType::NATIVE_INT, mspace2, fspace ); - - /* - * File dataset should look like this: - * 53 1 2 0 3 4 0 5 6 0 7 8 - * 0 9 10 0 11 12 0 13 14 0 15 16 - * 0 17 18 0 19 20 0 21 22 0 23 24 - * 0 0 0 59 0 61 0 0 0 0 0 0 - * 0 25 26 0 27 28 0 29 30 0 31 32 - * 0 33 34 0 35 36 67 37 38 0 39 40 - * 0 41 42 0 43 44 0 45 46 0 47 48 - * 0 0 0 0 0 0 0 0 0 0 0 0 - * - */ - - /* - * Close the dataset and the file. - */ - delete dataset; - delete file; - - /* - * Open the file. - */ - file = new H5File( FILE_NAME, H5F_ACC_RDONLY ); - - /* - * Open the dataset. - */ - dataset = new DataSet( file->openDataSet( DATASET_NAME )); - - /* - * Get dataspace of the dataset. - */ - fspace = dataset->getSpace(); - - /* - * Select first hyperslab for the dataset in the file. The following - * elements are selected: - * 10 0 11 12 - * 18 0 19 20 - * 0 59 0 61 - * - */ - start[0] = 1; start[1] = 2; - block[0] = 1; block[1] = 1; - stride[0] = 1; stride[1] = 1; - count[0] = 3; count[1] = 4; - fspace.selectHyperslab(H5S_SELECT_SET, count, start, stride, block); - - /* - * Add second selected hyperslab to the selection. - * The following elements are selected: - * 19 20 0 21 22 - * 0 61 0 0 0 - * 27 28 0 29 30 - * 35 36 67 37 38 - * 43 44 0 45 46 - * 0 0 0 0 0 - * Note that two hyperslabs overlap. Common elements are: - * 19 20 - * 0 61 - */ - start[0] = 2; start[1] = 4; - block[0] = 1; block[1] = 1; - stride[0] = 1; stride[1] = 1; - count[0] = 6; count[1] = 5; - fspace.selectHyperslab(H5S_SELECT_OR, count, start, stride, block); - - /* - * Create memory dataspace. - */ - hsize_t mdim[] = {MSPACE_DIM1, MSPACE_DIM2}; /* Dimension sizes of the + /* + * Turn off the auto-printing when failure occurs so that we can + * handle the errors appropriately + */ + Exception::dontPrint(); + + /* + * Create a file. + */ + H5File* file = new H5File( FILE_NAME, H5F_ACC_TRUNC ); + + /* + * Create property list for a dataset and set up fill values. + */ + int fillvalue = 0; /* Fill value for the dataset */ + DSetCreatPropList plist; + plist.setFillValue(PredType::NATIVE_INT, &fillvalue); + + /* + * Create dataspace for the dataset in the file. + */ + hsize_t fdim[] = {FSPACE_DIM1, FSPACE_DIM2}; // dim sizes of ds (on disk) + DataSpace fspace( FSPACE_RANK, fdim ); + + /* + * Create dataset and write it into the file. + */ + DataSet* dataset = new DataSet(file->createDataSet( + DATASET_NAME, PredType::NATIVE_INT, fspace, plist)); + + /* + * Select hyperslab for the dataset in the file, using 3x2 blocks, + * (4,3) stride and (2,4) count starting at the position (0,1). + */ + hsize_t start[2]; // Start of hyperslab + hsize_t stride[2]; // Stride of hyperslab + hsize_t count[2]; // Block count + hsize_t block[2]; // Block sizes + start[0] = 0; start[1] = 1; + stride[0] = 4; stride[1] = 3; + count[0] = 2; count[1] = 4; + block[0] = 3; block[1] = 2; + fspace.selectHyperslab( H5S_SELECT_SET, count, start, stride, block); + + /* + * Create dataspace for the first dataset. + */ + hsize_t dim1[] = {MSPACE1_DIM}; /* Dimension size of the first dataset + (in memory) */ + DataSpace mspace1( MSPACE1_RANK, dim1 ); + + /* + * Select hyperslab. + * We will use 48 elements of the vector buffer starting at the + * second element. Selected elements are 1 2 3 . . . 48 + */ + start[0] = 1; + stride[0] = 1; + count[0] = 48; + block[0] = 1; + mspace1.selectHyperslab( H5S_SELECT_SET, count, start, stride, block); + + /* + * Write selection from the vector buffer to the dataset in the file. + * + * File dataset should look like this: + * 0 1 2 0 3 4 0 5 6 0 7 8 + * 0 9 10 0 11 12 0 13 14 0 15 16 + * 0 17 18 0 19 20 0 21 22 0 23 24 + * 0 0 0 0 0 0 0 0 0 0 0 0 + * 0 25 26 0 27 28 0 29 30 0 31 32 + * 0 33 34 0 35 36 0 37 38 0 39 40 + * 0 41 42 0 43 44 0 45 46 0 47 48 + * 0 0 0 0 0 0 0 0 0 0 0 0 + */ + int vector[MSPACE1_DIM]; // vector buffer for dset + + /* + * Buffer initialization. + */ + vector[0] = vector[MSPACE1_DIM - 1] = -1; + for (i = 1; i < MSPACE1_DIM - 1; i++) + vector[i] = i; + + dataset->write( vector, PredType::NATIVE_INT, mspace1, fspace ); + + /* + * Reset the selection for the file dataspace fid. + */ + fspace.selectNone(); + + /* + * Create dataspace for the second dataset. + */ + hsize_t dim2[] = {MSPACE2_DIM}; /* Dimension size of the second dataset + (in memory */ + DataSpace mspace2( MSPACE2_RANK, dim2 ); + + /* + * Select sequence of NPOINTS points in the file dataspace. + */ + hsize_t coord[NPOINTS][FSPACE_RANK]; /* Array to store selected points + from the file dataspace */ + coord[0][0] = 0; coord[0][1] = 0; + coord[1][0] = 3; coord[1][1] = 3; + coord[2][0] = 3; coord[2][1] = 5; + coord[3][0] = 5; coord[3][1] = 6; + + fspace.selectElements( H5S_SELECT_SET, NPOINTS, (const hsize_t *)coord); + + /* + * Write new selection of points to the dataset. + */ + int values[] = {53, 59, 61, 67}; /* New values to be written */ + dataset->write( values, PredType::NATIVE_INT, mspace2, fspace ); + + /* + * File dataset should look like this: + * 53 1 2 0 3 4 0 5 6 0 7 8 + * 0 9 10 0 11 12 0 13 14 0 15 16 + * 0 17 18 0 19 20 0 21 22 0 23 24 + * 0 0 0 59 0 61 0 0 0 0 0 0 + * 0 25 26 0 27 28 0 29 30 0 31 32 + * 0 33 34 0 35 36 67 37 38 0 39 40 + * 0 41 42 0 43 44 0 45 46 0 47 48 + * 0 0 0 0 0 0 0 0 0 0 0 0 + * + */ + + /* + * Close the dataset and the file. + */ + delete dataset; + delete file; + + /* + * Open the file. + */ + file = new H5File( FILE_NAME, H5F_ACC_RDONLY ); + + /* + * Open the dataset. + */ + dataset = new DataSet( file->openDataSet( DATASET_NAME )); + + /* + * Get dataspace of the dataset. + */ + fspace = dataset->getSpace(); + + /* + * Select first hyperslab for the dataset in the file. The following + * elements are selected: + * 10 0 11 12 + * 18 0 19 20 + * 0 59 0 61 + * + */ + start[0] = 1; start[1] = 2; + block[0] = 1; block[1] = 1; + stride[0] = 1; stride[1] = 1; + count[0] = 3; count[1] = 4; + fspace.selectHyperslab(H5S_SELECT_SET, count, start, stride, block); + + /* + * Add second selected hyperslab to the selection. + * The following elements are selected: + * 19 20 0 21 22 + * 0 61 0 0 0 + * 27 28 0 29 30 + * 35 36 67 37 38 + * 43 44 0 45 46 + * 0 0 0 0 0 + * Note that two hyperslabs overlap. Common elements are: + * 19 20 + * 0 61 + */ + start[0] = 2; start[1] = 4; + block[0] = 1; block[1] = 1; + stride[0] = 1; stride[1] = 1; + count[0] = 6; count[1] = 5; + fspace.selectHyperslab(H5S_SELECT_OR, count, start, stride, block); + + /* + * Create memory dataspace. + */ + hsize_t mdim[] = {MSPACE_DIM1, MSPACE_DIM2}; /* Dimension sizes of the dataset in memory when we read selection from the dataset on the disk */ - DataSpace mspace(MSPACE_RANK, mdim); - - /* - * Select two hyperslabs in memory. Hyperslabs has the same - * size and shape as the selected hyperslabs for the file dataspace. - */ - start[0] = 0; start[1] = 0; - block[0] = 1; block[1] = 1; - stride[0] = 1; stride[1] = 1; - count[0] = 3; count[1] = 4; - mspace.selectHyperslab(H5S_SELECT_SET, count, start, stride, block); - start[0] = 1; start[1] = 2; - block[0] = 1; block[1] = 1; - stride[0] = 1; stride[1] = 1; - count[0] = 6; count[1] = 5; - mspace.selectHyperslab(H5S_SELECT_OR, count, start, stride, block); - - /* - * Initialize data buffer. - */ - int matrix_out[MSPACE_DIM1][MSPACE_DIM2]; - for (i = 0; i < MSPACE_DIM1; i++) - for (j = 0; j < MSPACE_DIM2; j++) - matrix_out[i][j] = 0; - - /* - * Read data back to the buffer matrix. - */ - dataset->read(matrix_out, PredType::NATIVE_INT, mspace, fspace); - - /* - * Display the result. Memory dataset is: - * - * 10 0 11 12 0 0 0 0 0 - * 18 0 19 20 0 21 22 0 0 - * 0 59 0 61 0 0 0 0 0 - * 0 0 27 28 0 29 30 0 0 - * 0 0 35 36 67 37 38 0 0 - * 0 0 43 44 0 45 46 0 0 - * 0 0 0 0 0 0 0 0 0 - * 0 0 0 0 0 0 0 0 0 - */ - for (i=0; i < MSPACE_DIM1; i++) - { - for(j=0; j < MSPACE_DIM2; j++) - cout << matrix_out[i][j] << " "; - cout << endl; - } - - /* - * Close the dataset and the file. - */ - delete dataset; - delete file; + DataSpace mspace(MSPACE_RANK, mdim); + + /* + * Select two hyperslabs in memory. Hyperslabs has the same + * size and shape as the selected hyperslabs for the file dataspace. + */ + start[0] = 0; start[1] = 0; + block[0] = 1; block[1] = 1; + stride[0] = 1; stride[1] = 1; + count[0] = 3; count[1] = 4; + mspace.selectHyperslab(H5S_SELECT_SET, count, start, stride, block); + start[0] = 1; start[1] = 2; + block[0] = 1; block[1] = 1; + stride[0] = 1; stride[1] = 1; + count[0] = 6; count[1] = 5; + mspace.selectHyperslab(H5S_SELECT_OR, count, start, stride, block); + + /* + * Initialize data buffer. + */ + int matrix_out[MSPACE_DIM1][MSPACE_DIM2]; + for (i = 0; i < MSPACE_DIM1; i++) + for (j = 0; j < MSPACE_DIM2; j++) + matrix_out[i][j] = 0; + + /* + * Read data back to the buffer matrix. + */ + dataset->read(matrix_out, PredType::NATIVE_INT, mspace, fspace); + + /* + * Display the result. Memory dataset is: + * + * 10 0 11 12 0 0 0 0 0 + * 18 0 19 20 0 21 22 0 0 + * 0 59 0 61 0 0 0 0 0 + * 0 0 27 28 0 29 30 0 0 + * 0 0 35 36 67 37 38 0 0 + * 0 0 43 44 0 45 46 0 0 + * 0 0 0 0 0 0 0 0 0 + * 0 0 0 0 0 0 0 0 0 + */ + for (i=0; i < MSPACE_DIM1; i++) + { + for(j=0; j < MSPACE_DIM2; j++) + cout << matrix_out[i][j] << " "; + cout << endl; + } + + /* + * Close the dataset and the file. + */ + delete dataset; + delete file; } // end of try block // catch failure caused by the H5File operations catch( FileIException error ) { - error.printError(); - return -1; + error.printError(); + return -1; } // catch failure caused by the DataSet operations catch( DataSetIException error ) { - error.printError(); - return -1; + error.printError(); + return -1; } // catch failure caused by the DataSpace operations catch( DataSpaceIException error ) { - error.printError(); - return -1; + error.printError(); + return -1; } return 0; |