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-rw-r--r--c++/src/H5File.C474
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diff --git a/c++/src/H5File.C b/c++/src/H5File.C
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--- a/c++/src/H5File.C
+++ /dev/null
@@ -1,474 +0,0 @@
-#include <string>
-
-#include "H5Include.h"
-#include "H5RefCounter.h"
-#include "H5Exception.h"
-#include "H5IdComponent.h"
-#include "H5Idtemplates.h"
-#include "H5PropList.h"
-#include "H5Object.h"
-#include "H5FaccProp.h"
-#include "H5FcreatProp.h"
-#include "H5DxferProp.h"
-#include "H5DcreatProp.h"
-#include "H5Group.h"
-#include "H5AbstractDs.h"
-#include "H5DataSpace.h"
-#include "H5DataSet.h"
-#include "H5File.h"
-#include "H5Alltypes.h"
-#include "H5CommonFG.h"
-
-#ifndef H5_NO_NAMESPACE
-namespace H5 {
-#endif
-
-// Creates or opens an HDF5 file depending on the parameter flags.
-H5File::H5File( const string& name, unsigned int flags, const FileCreatPropList& create_plist, const FileAccPropList& access_plist ) : IdComponent()
-{
- getFile( name.c_str(), flags, create_plist, access_plist );
-}
-
-H5File::H5File( const char* name, unsigned int flags, const FileCreatPropList& create_plist, const FileAccPropList& access_plist ) : IdComponent()
-{
- getFile( name, flags, create_plist, access_plist );
-}
-
-// This function is private and contains common code between the
-// constructors taking a string or a char*
-void H5File::getFile( const char* name, unsigned int flags, const FileCreatPropList& create_plist, const FileAccPropList& access_plist )
-{
- // These bits only set for creation, so if any of them are set,
- // create the file.
- if( flags & (H5F_ACC_EXCL|H5F_ACC_TRUNC|H5F_ACC_DEBUG ))
- {
- hid_t create_plist_id = create_plist.getId();
- hid_t access_plist_id = access_plist.getId();
- id = H5Fcreate( name, flags, create_plist_id, access_plist_id );
- }
- // Open the file if none of the bits above are set.
- else
- {
- // use create_plist for access plist because of the default argument
- hid_t access_plist_id = create_plist.getId();
- id = H5Fopen( name, flags, access_plist_id );
- }
-
- if( id <= 0 ) // throw an exception when open/create fail
- {
- throw FileIException();
- }
-}
-
-// Copy constructor: makes a copy of the original H5File object.
-H5File::H5File( const H5File& original ) : IdComponent( original ) {}
-
-// Determines whether a file specified by its name in HDF5 format
-bool H5File::isHdf5(const string& name )
-{
- return( isHdf5( name.c_str()) );
-}
-bool H5File::isHdf5(const char* name )
-{
- // Calls C routine H5Fis_hdf5 to determine whether the file is in
- // HDF5 format. It returns positive value, 0, or negative value
- htri_t ret_value = H5Fis_hdf5( name );
- if( ret_value > 0 )
- return true;
- else if( ret_value == 0 )
- return false;
- else // Raise exception when H5Fis_hdf5 returns a negative value
- {
- throw FileIException();
- }
-}
-
-// Reopens this file
-void H5File::reopen()
-{
- // reset the identifier of this H5File - send 'this' in so that
- // H5Fclose can be called appropriately
- resetIdComponent( this );
-
- // call C routine to reopen the file - Note: not sure about this
- // does id need to be closed later? which id to be the parameter?
- id = H5Freopen( id );
- if( id <= 0 ) // Raise exception when H5Freopen returns a neg value
- {
- throw FileIException();
- }
-}
-
-// Creates a new group in this file using the template function provided
-// in FGtemplates.h
-Group H5File::createGroup( const string& name, size_t size_hint ) const
-{
- return( createGroup( name.c_str(), size_hint ));
-}
-
-Group H5File::createGroup( const char* name, size_t size_hint ) const
-{
- try {
- Group group = createGroupT( id, name, size_hint );
- return( group );
- }
- catch( File_GroupException error )
- {
- throw FileIException();
- }
-}
-
-// Opens an existing group in this file using the template function provided
-// in FGtemplates.h
-Group H5File::openGroup( const string& name ) const
-{
- return( openGroup( name.c_str() ));
-}
-
-Group H5File::openGroup( const char* name ) const
-{
- try {
- Group group = openGroupT( id, name );
- return( group );
- }
- catch( File_GroupException error )
- {
- throw FileIException();
- }
-}
-
-// Creates a dataset in this file using the template function
-// provided in FGtemplates.h
-DataSet H5File::createDataSet( const string& name, const DataType& data_type, const DataSpace& data_space, const DSetCreatPropList& create_plist ) const
-{
- return( createDataSet( name.c_str(), data_type, data_space, create_plist ));
-}
-
-DataSet H5File::createDataSet( const char* name, const DataType& data_type, const DataSpace& data_space, const DSetCreatPropList& create_plist ) const
-{
- try {
- DataSet dataset = createDataSetT( id, name, data_type, data_space, create_plist );
- return( dataset );
- }
- catch( File_GroupException error )
- {
- throw FileIException();
- }
-}
-
-// Opens an existing dataset in this file using the template function
-// provided in FGtemplates.h
-DataSet H5File::openDataSet( const string& name ) const
-{
- return( openDataSet( name.c_str() ));
-}
-
-DataSet H5File::openDataSet( const char* name ) const
-{
- try {
- DataSet dataset = openDataSetT( id, name );
- return( dataset );
- }
- catch( File_GroupException error )
- {
- throw FileIException();
- }
-}
-
-// This private member function calls the C API H5Topen to open the
-// named datatype in this file, and returns the datatype's identifier.
-// The function is used by the functions openXxxType's below for
-// opening the sub-types
-hid_t H5File::p_openDataType( const char* name ) const
-{
- // Call C function H5Topen to open the named datatype in this group,
- // giving the group id
- hid_t datatype_id = H5Topen( id, name );
-
- // If the datatype id is valid, return it, otherwise, throw an exception.
- if( datatype_id > 0 )
- return( datatype_id );
- else
- {
- throw FileIException();
- }
-}
-
-//
-// The following member functions use the private function
-// p_openDataType to open a named datatype in this group
-//
-
-// Opens the named generic datatype in this group.
-DataType H5File::openDataType( const string& name ) const
-{
- return( openDataType( name.c_str()) );
-}
-DataType H5File::openDataType( const char* name ) const
-{
- DataType data_type( p_openDataType( name ));
- return( data_type );
-}
-
-// Opens the named enumeration datatype in this group.
-EnumType H5File::openEnumType( const string& name ) const
-{
- return( openEnumType( name.c_str()) );
-}
-EnumType H5File::openEnumType( const char* name ) const
-{
- EnumType enum_type( p_openDataType( name ));
- return( enum_type );
-}
-
-// Opens the named compound datatype in this group.
-CompType H5File::openCompType( const string& name ) const
-{
- return( openCompType( name.c_str()) );
-}
-CompType H5File::openCompType( const char* name ) const
-{
- CompType comp_type( p_openDataType( name ));
- return( comp_type );
-}
-
-// Opens the named integer datatype in this group.
-IntType H5File::openIntType( const string& name ) const
-{
- return( openIntType( name.c_str()) );
-}
-IntType H5File::openIntType( const char* name ) const
-{
- IntType int_type( p_openDataType( name ));
- return( int_type );
-}
-
-// Opens the named floating-point datatype in this group.
-FloatType H5File::openFloatType( const string& name ) const
-{
- return( openFloatType( name.c_str()) );
-}
-FloatType H5File::openFloatType( const char* name ) const
-{
- FloatType float_type( p_openDataType( name ));
- return( float_type );
-}
-
-// Opens the named string datatype of this group
-StrType H5File::openStrType( const string& name ) const
-{
- return( openStrType( name.c_str()) );
-}
-StrType H5File::openStrType( const char* name ) const
-{
- StrType str_type( p_openDataType( name ));
- return( str_type );
-}
-
-// Returns the creation property list of this file
-FileCreatPropList H5File::getCreatePlist() const
-{
- hid_t create_plist_id = H5Fget_create_plist( id );
-
- // if H5Fget_create_plist returns a valid id, create and return
- // the FileCreatPropList object for this property list
- if( create_plist_id > 0 )
- {
- FileCreatPropList create_plist( create_plist_id );
- return( create_plist );
- }
- else
- {
- throw FileIException();
- }
-}
-
-// Returns the access property list of this file
-FileAccPropList H5File::getAccessPlist() const
-{
- hid_t access_plist_id = H5Fget_access_plist( id );
-
- // if H5Fget_access_plist returns a valid id, create and return
- // the FileAccPropList object for this property list
- if( access_plist_id > 0 )
- {
- FileAccPropList access_plist( access_plist_id );
- return access_plist;
- }
- else // Raise an exception
- {
- throw FileIException();
- }
-}
-
-// Creates a link of the specified type from new_name to current_name;
-// both names are interpreted relative to this file
-void H5File::link( H5G_link_t link_type, const string& curr_name, const string& new_name ) const
-{
- link( link_type, curr_name.c_str(), new_name.c_str() );
-}
-
-void H5File::link( H5G_link_t link_type, const char* curr_name, const char* new_name ) const
-{
- try {
- linkT( id, link_type, curr_name, new_name );
- }
- catch( File_GroupException error ) {
- throw FileIException();
- }
-}
-
-// Removes the specified name from this file.
-void H5File::unlink( const string& name ) const
-{
- unlink( name.c_str());
-}
-
-void H5File::unlink( const char* name ) const
-{
- try {
- unlinkT( id, name );
- }
- catch( File_GroupException error ) {
- throw FileIException();
- }
-}
-
-// Renames an object from this file.
-void H5File::move( const string& src, const string& dst ) const
-{
- move( src.c_str(), dst.c_str());
-}
-
-void H5File::move( const char* src, const char* dst ) const
-{
- try {
- moveT( id, src, dst );
- }
- catch( File_GroupException error ) {
- throw FileIException();
- }
-}
-
-// Returns information about an object
-void H5File::getObjinfo( const string& name, hbool_t follow_link, H5G_stat_t& statbuf ) const
-{
- getObjinfo( name, follow_link, statbuf );
-}
-
-void H5File::getObjinfo( const char* name, hbool_t follow_link, H5G_stat_t& statbuf ) const
-{
- try {
- getObjinfoT( id, name, follow_link, statbuf );
- }
- catch( File_GroupException error ) {
- throw FileIException();
- }
-}
-
-// Returns the name of the object that the symbolic link points to.
-string H5File::getLinkval( const string& name, size_t size ) const
-{
- return( getLinkval( name.c_str(), size ));
-}
-
-string H5File::getLinkval( const char* name, size_t size ) const
-{
- try {
- string value = getLinkvalT( id, name, size );
- return( value );
- }
- catch( File_GroupException error ) {
- throw FileIException();
- }
-}
-
-// Sets comment for specified object.
-void H5File::setComment( const string& name, const string& comment ) const
-{
- setComment( name.c_str(), comment.c_str());
-}
-
-void H5File::setComment( const char* name, const char* comment ) const
-{
- try {
- setCommentT( id, name, comment );
- }
- catch( File_GroupException error ) {
- throw FileIException();
- }
-}
-
-// Retrieves comment for specified object
-string H5File::getComment( const string& name, size_t bufsize ) const
-{
- return( getComment( name.c_str(), bufsize ));
-}
-
-string H5File::getComment( const char* name, size_t bufsize ) const
-{
- try {
- string comment = getCommentT( id, name, bufsize );
- return( comment );
- }
- catch( File_GroupException error ) {
- throw FileIException();
- }
-}
-
-// Mounts the file 'child' onto this file
-void H5File::mount( const string& name, H5File& child, PropList& mount_plist ) const
-{
- mount( name.c_str(), child, mount_plist );
-}
-
-void H5File::mount( const char* name, H5File& child, PropList& mount_plist ) const
-{
- try {
- mountT( id, name, child.getId(), mount_plist );
- }
- catch( File_GroupException error ) {
- throw FileIException();
- }
-}
-
-// Unmounts the file named 'name' from this parent file
-void H5File::unmount( const string& name ) const
-{
- unmount( name.c_str() );
-}
-
-void H5File::unmount( const char* name ) const
-{
- try {
- unmountT( id, name );
- }
- catch( File_GroupException error ) {
- throw FileIException();
- }
-}
-
-// Calls the C API H5Fclose to close this file. Used by IdComponent::reset
-void H5File::p_close() const
-{
- herr_t ret_value = H5Fclose( id );
- if( ret_value < 0 )
- {
- throw FileIException();
- }
-}
-
-// The destructor of this instance calls IdComponent::reset to
-// reset its identifier - no longer true
-// Older compilers (baldric) don't support template member functions
-// and IdComponent::reset is one; so at this time, the resetId is not
-// a member function so it can be template to work around that problem.
-H5File::~H5File()
-{
- // The HDF5 file id will be closed properly
- resetIdComponent( this );
-}
-
-#ifndef H5_NO_NAMESPACE
-} // end namespace
-#endif