diff options
Diffstat (limited to 'c++/src/H5Location.cpp')
| -rw-r--r-- | c++/src/H5Location.cpp | 901 |
1 files changed, 556 insertions, 345 deletions
diff --git a/c++/src/H5Location.cpp b/c++/src/H5Location.cpp index 2641960..915f2a9 100644 --- a/c++/src/H5Location.cpp +++ b/c++/src/H5Location.cpp @@ -6,16 +6,15 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#include <string> #include <iostream> +#include <string> using namespace std; -#include "H5private.h" // for HDmemset #include "H5Include.h" #include "H5Exception.h" #include "H5IdComponent.h" @@ -45,7 +44,9 @@ namespace H5 { // Function: H5Location default constructor (protected) // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- -H5Location::H5Location() : IdComponent() {} +H5Location::H5Location() : IdComponent() +{ +} //-------------------------------------------------------------------------- // Function: H5Location overloaded constructor (protected) @@ -88,7 +89,8 @@ H5Location::H5Location() : IdComponent() {} // Modification // Renamed from exists() in 1.10.2 -BMR //-------------------------------------------------------------------------- -bool H5Location::nameExists(const char* name, const LinkAccPropList& lapl) const +bool +H5Location::nameExists(const char *name, const LinkAccPropList &lapl) const { htri_t ret_value = H5Lexists(getId(), name, lapl.getId()); if (ret_value > 0) @@ -110,9 +112,10 @@ bool H5Location::nameExists(const char* name, const LinkAccPropList& lapl) const // Modification // Renamed from exists() in 1.10.2 -BMR //-------------------------------------------------------------------------- -bool H5Location::nameExists(const H5std_string& name, const LinkAccPropList& lapl) const +bool +H5Location::nameExists(const H5std_string &name, const LinkAccPropList &lapl) const { - return(nameExists(name.c_str(), lapl)); + return (nameExists(name.c_str(), lapl)); } //-------------------------------------------------------------------------- @@ -126,9 +129,10 @@ bool H5Location::nameExists(const H5std_string& name, const LinkAccPropList& lap // Modification // Renamed to nameExists() in 1.10.2 -BMR //-------------------------------------------------------------------------- -bool H5Location::exists(const char* name, const LinkAccPropList& lapl) const +bool +H5Location::exists(const char *name, const LinkAccPropList &lapl) const { - return(nameExists(name, lapl)); + return (nameExists(name, lapl)); } //-------------------------------------------------------------------------- @@ -142,9 +146,10 @@ bool H5Location::exists(const char* name, const LinkAccPropList& lapl) const // Modification // Renamed to nameExists() in 1.10.2 -BMR //-------------------------------------------------------------------------- -bool H5Location::exists(const H5std_string& name, const LinkAccPropList& lapl) const +bool +H5Location::exists(const H5std_string &name, const LinkAccPropList &lapl) const { - return(nameExists(name.c_str(), lapl)); + return (nameExists(name.c_str(), lapl)); } //-------------------------------------------------------------------------- @@ -162,11 +167,11 @@ bool H5Location::exists(const H5std_string& name, const LinkAccPropList& lapl) c // Sep 2012 - BMR // Moved from H5File/H5Object //-------------------------------------------------------------------------- -void H5Location::flush(H5F_scope_t scope) const +void +H5Location::flush(H5F_scope_t scope) const { herr_t ret_value = H5Fflush(getId(), scope); - if (ret_value < 0) - { + if (ret_value < 0) { throw LocationException(inMemFunc("flush"), "H5Fflush failed"); } } @@ -179,12 +184,13 @@ void H5Location::flush(H5F_scope_t scope) const ///\exception H5::LocationException // Programmer Binh-Minh Ribler - Jul, 2004 //-------------------------------------------------------------------------- -H5std_string H5Location::getFileName() const +H5std_string +H5Location::getFileName() const { try { - return(p_get_file_name()); + return (p_get_file_name()); } - catch (IdComponentException& E) { + catch (IdComponentException &E) { throw LocationException(inMemFunc("getFileName"), E.getDetailMsg()); } } @@ -209,7 +215,8 @@ H5std_string H5Location::getFileName() const // to another class to accommodate attribute, dataset, and named // datatype. - BMR //-------------------------------------------------------------------------- -void H5Location::setComment(const char* name, const char* comment) const +void +H5Location::setComment(const char *name, const char *comment) const { herr_t ret_value = H5Oset_comment_by_name(getId(), name, comment, H5P_DEFAULT); if (ret_value < 0) @@ -223,7 +230,8 @@ void H5Location::setComment(const char* name, const char* comment) const /// \c H5std_string for \a name and \a comment. // Programmer Binh-Minh Ribler - 2000 (moved from CommonFG, Sep 2013) //-------------------------------------------------------------------------- -void H5Location::setComment(const H5std_string& name, const H5std_string& comment) const +void +H5Location::setComment(const H5std_string &name, const H5std_string &comment) const { setComment(name.c_str(), comment.c_str()); } @@ -235,7 +243,8 @@ void H5Location::setComment(const H5std_string& name, const H5std_string& commen /// an object name. // Programmer Binh-Minh Ribler - Sep 2013 //-------------------------------------------------------------------------- -void H5Location::setComment(const char* comment) const +void +H5Location::setComment(const char *comment) const { herr_t ret_value = H5Oset_comment_by_name(getId(), ".", comment, H5P_DEFAULT); if (ret_value < 0) @@ -249,7 +258,8 @@ void H5Location::setComment(const char* comment) const /// \c H5std_string for \a comment. // Programmer Binh-Minh Ribler - Sep 2013 //-------------------------------------------------------------------------- -void H5Location::setComment(const H5std_string& comment) const +void +H5Location::setComment(const H5std_string &comment) const { setComment(comment.c_str()); } @@ -265,7 +275,8 @@ void H5Location::setComment(const H5std_string& comment) const // to another class to accommodate attribute, dataset, and named // datatype. - BMR //-------------------------------------------------------------------------- -void H5Location::removeComment(const char* name) const +void +H5Location::removeComment(const char *name) const { herr_t ret_value = H5Oset_comment_by_name(getId(), name, NULL, H5P_DEFAULT); if (ret_value < 0) @@ -279,9 +290,10 @@ void H5Location::removeComment(const char* name) const /// \c H5std_string for \a name. // Programmer Binh-Minh Ribler - May 2005 (moved from CommonFG, Sep 2013) //-------------------------------------------------------------------------- -void H5Location::removeComment(const H5std_string& name) const +void +H5Location::removeComment(const H5std_string &name) const { - removeComment (name.c_str()); + removeComment(name.c_str()); } //-------------------------------------------------------------------------- @@ -299,7 +311,8 @@ void H5Location::removeComment(const H5std_string& name) const /// will be truncated to accommodate the null terminator. // Programmer Binh-Minh Ribler - Mar 2014 //-------------------------------------------------------------------------- -ssize_t H5Location::getComment(const char* name, size_t buf_size, char* comment) const +ssize_t +H5Location::getComment(const char *name, size_t buf_size, char *comment) const { // H5Oget_comment_by_name will get buf_size chars of the comment including // the null terminator @@ -307,17 +320,16 @@ ssize_t H5Location::getComment(const char* name, size_t buf_size, char* comment) comment_len = H5Oget_comment_by_name(getId(), name, comment, buf_size, H5P_DEFAULT); // If H5Oget_comment_by_name returns a negative value, raise an exception - if (comment_len < 0) - { + if (comment_len < 0) { throw LocationException("H5Location::getComment", "H5Oget_comment_by_name failed"); } // If the comment is longer than the provided buffer size, the C library // will not null terminate it if (static_cast<size_t>(comment_len) >= buf_size) - comment[buf_size-1] = '\0'; + comment[buf_size - 1] = '\0'; // Return the actual comment length, which might be different from buf_size - return(comment_len); + return (comment_len); } //-------------------------------------------------------------------------- @@ -330,24 +342,23 @@ ssize_t H5Location::getComment(const char* name, size_t buf_size, char* comment) ///\exception H5::LocationException // Programmer Binh-Minh Ribler - 2000 (moved from CommonFG, Sep 2013) //-------------------------------------------------------------------------- -H5std_string H5Location::getComment(const char* name, size_t buf_size) const +H5std_string +H5Location::getComment(const char *name, size_t buf_size) const { // Initialize string to "", so that if there is no comment, the returned // string will be empty - H5std_string comment(""); + H5std_string comment; // Preliminary call to get the comment's length - ssize_t comment_len = H5Oget_comment_by_name(getId(), name, NULL, (size_t)0, H5P_DEFAULT); + ssize_t comment_len = H5Oget_comment_by_name(getId(), name, NULL, 0, H5P_DEFAULT); // If H5Oget_comment_by_name returns a negative value, raise an exception - if (comment_len < 0) - { + if (comment_len < 0) { throw LocationException("H5Location::getComment", "H5Oget_comment_by_name failed"); } // If comment exists, calls C routine again to get it - else if (comment_len > 0) - { + else if (comment_len > 0) { size_t tmp_len = buf_size; // If buffer size is not provided, use comment length @@ -355,14 +366,12 @@ H5std_string H5Location::getComment(const char* name, size_t buf_size) const tmp_len = comment_len; // Temporary buffer for char* comment - char* comment_C = new char[tmp_len+1]; - HDmemset(comment_C, 0, tmp_len+1); // clear buffer + char *comment_C = new char[tmp_len + 1](); // Used overloaded function - ssize_t temp_len = getComment(name, tmp_len+1, comment_C); - if (temp_len < 0) - { - delete []comment_C; + ssize_t temp_len = getComment(name, tmp_len + 1, comment_C); + if (temp_len < 0) { + delete[] comment_C; throw LocationException("H5Location::getComment", "H5Oget_comment_by_name failed"); } @@ -370,11 +379,11 @@ H5std_string H5Location::getComment(const char* name, size_t buf_size) const comment = comment_C; // Clean up resource - delete []comment_C; + delete[] comment_C; } // Return the string comment - return(comment); + return (comment); } //-------------------------------------------------------------------------- @@ -384,10 +393,12 @@ H5std_string H5Location::getComment(const char* name, size_t buf_size) const /// \c H5std_string for \a name. // Programmer Binh-Minh Ribler - 2000 (moved from CommonFG, Sep 2013) //-------------------------------------------------------------------------- -H5std_string H5Location::getComment(const H5std_string& name, size_t buf_size) const +H5std_string +H5Location::getComment(const H5std_string &name, size_t buf_size) const { - return(getComment(name.c_str(), buf_size)); + return (getComment(name.c_str(), buf_size)); } + #ifndef DOXYGEN_SHOULD_SKIP_THIS //-------------------------------------------------------------------------- @@ -400,11 +411,11 @@ H5std_string H5Location::getComment(const H5std_string& name, size_t buf_size) c // Exception H5::ReferenceException // Programmer Binh-Minh Ribler - May, 2004 //-------------------------------------------------------------------------- -void H5Location::p_reference(void* ref, const char* name, hid_t space_id, H5R_type_t ref_type) const +void +H5Location::p_reference(void *ref, const char *name, hid_t space_id, H5R_type_t ref_type) const { herr_t ret_value = H5Rcreate(ref, getId(), name, ref_type, space_id); - if (ret_value < 0) - { + if (ret_value < 0) { throw ReferenceException(inMemFunc("reference"), "H5Rcreate failed"); } } @@ -425,12 +436,13 @@ void H5Location::p_reference(void* ref, const char* name, hid_t space_id, H5R_ty ///\note This method is more suitable for a dataset region reference. // Programmer Binh-Minh Ribler - May, 2004 //-------------------------------------------------------------------------- -void H5Location::reference(void* ref, const char* name, const DataSpace& dataspace, H5R_type_t ref_type) const +void +H5Location::reference(void *ref, const char *name, const DataSpace &dataspace, H5R_type_t ref_type) const { try { p_reference(ref, name, dataspace.getId(), ref_type); } - catch (ReferenceException& E) { + catch (ReferenceException &E) { throw ReferenceException(inMemFunc("reference"), E.getDetailMsg()); } } @@ -451,12 +463,14 @@ void H5Location::reference(void* ref, const char* name, const DataSpace& dataspa ///\note This method is more suitable for a dataset region reference. // Programmer Binh-Minh Ribler - May, 2004 //-------------------------------------------------------------------------- -void H5Location::reference(void* ref, const H5std_string& name, const DataSpace& dataspace, H5R_type_t ref_type) const +void +H5Location::reference(void *ref, const H5std_string &name, const DataSpace &dataspace, + H5R_type_t ref_type) const { try { p_reference(ref, name.c_str(), dataspace.getId(), ref_type); } - catch (ReferenceException& E) { + catch (ReferenceException &E) { throw ReferenceException(inMemFunc("reference"), E.getDetailMsg()); } } @@ -475,12 +489,13 @@ void H5Location::reference(void* ref, const H5std_string& name, const DataSpace& ///\note This method is more suitable for an object reference. // Programmer Binh-Minh Ribler - May, 2004 //-------------------------------------------------------------------------- -void H5Location::reference(void* ref, const char* name, H5R_type_t ref_type) const +void +H5Location::reference(void *ref, const char *name, H5R_type_t ref_type) const { try { p_reference(ref, name, -1, ref_type); } - catch (ReferenceException& E) { + catch (ReferenceException &E) { throw ReferenceException(inMemFunc("reference"), E.getDetailMsg()); } } @@ -498,9 +513,10 @@ void H5Location::reference(void* ref, const char* name, H5R_type_t ref_type) con ///\note This method is more suitable for an object reference. // Programmer Binh-Minh Ribler - May, 2004 //-------------------------------------------------------------------------- -void H5Location::reference(void* ref, const H5std_string& name, H5R_type_t ref_type) const +void +H5Location::reference(void *ref, const H5std_string &name, H5R_type_t ref_type) const { - reference(ref, name.c_str(), ref_type); + reference(ref, name.c_str(), ref_type); } #ifndef DOXYGEN_SHOULD_SKIP_THIS @@ -517,7 +533,9 @@ void H5Location::reference(void* ref, const H5std_string& name, H5R_type_t ref_t // Exception H5::ReferenceException // Programmer Binh-Minh Ribler - Oct, 2006 //-------------------------------------------------------------------------- -hid_t H5Location::p_dereference(hid_t loc_id, const void* ref, H5R_type_t ref_type, const PropList& plist, const char* from_func) +hid_t +H5Location::p_dereference(hid_t loc_id, const void *ref, H5R_type_t ref_type, const PropList &plist, + const char *from_func) { hid_t plist_id; if (p_valid_id(plist.getId())) @@ -526,12 +544,11 @@ hid_t H5Location::p_dereference(hid_t loc_id, const void* ref, H5R_type_t ref_ty plist_id = H5P_DEFAULT; hid_t temp_id = H5Rdereference2(loc_id, plist_id, ref_type, ref); - if (temp_id < 0) - { + if (temp_id < 0) { throw ReferenceException(inMemFunc(from_func), "H5Rdereference2 failed"); } - return(temp_id); + return (temp_id); } #endif // DOXYGEN_SHOULD_SKIP_THIS @@ -545,7 +562,8 @@ hid_t H5Location::p_dereference(hid_t loc_id, const void* ref, H5R_type_t ref_ty ///\exception H5::ReferenceException // Programmer Binh-Minh Ribler - Oct, 2006 //-------------------------------------------------------------------------- -void H5Location::dereference(const H5Location& loc, const void* ref, H5R_type_t ref_type, const PropList& plist) +void +H5Location::dereference(const H5Location &loc, const void *ref, H5R_type_t ref_type, const PropList &plist) { p_setId(p_dereference(loc.getId(), ref, ref_type, plist, "dereference")); } @@ -564,11 +582,12 @@ void H5Location::dereference(const H5Location& loc, const void* ref, H5R_type_t // Removed in 1.10.1 because H5Location is Attribute's baseclass // now. -BMR //-------------------------------------------------------------------------- - /* void H5Location::dereference(const Attribute& attr, const void* ref, H5R_type_t ref_type, const PropList& plist) +/* void H5Location::dereference(const Attribute& attr, const void* ref, H5R_type_t ref_type, const PropList& +plist) { - p_setId(p_dereference(attr.getId(), ref, ref_type, plist, "dereference")); + p_setId(p_dereference(attr.getId(), ref, ref_type, plist, "dereference")); } - */ +*/ #ifndef H5_NO_DEPRECATED_SYMBOLS //-------------------------------------------------------------------------- @@ -590,12 +609,13 @@ void H5Location::dereference(const H5Location& loc, const void* ref, H5R_type_t // Modification // Sep 2012: Moved up from H5File, Group, DataSet, and DataType //-------------------------------------------------------------------------- -H5G_obj_t H5Location::getObjType(void *ref, H5R_type_t ref_type) const +H5G_obj_t +H5Location::getObjType(void *ref, H5R_type_t ref_type) const { try { - return(p_get_obj_type(ref, ref_type)); + return (p_get_obj_type(ref, ref_type)); } - catch (ReferenceException& E) { + catch (ReferenceException &E) { throw ReferenceException(inMemFunc("getObjType"), E.getDetailMsg()); } } @@ -617,16 +637,17 @@ H5G_obj_t H5Location::getObjType(void *ref, H5R_type_t ref_type) const // Exception H5::ReferenceException // Programmer Binh-Minh Ribler - May, 2004 //-------------------------------------------------------------------------- -H5G_obj_t H5Location::p_get_obj_type(void *ref, H5R_type_t ref_type) const +H5G_obj_t +H5Location::p_get_obj_type(void *ref, H5R_type_t ref_type) const { - H5G_obj_t obj_type = H5Rget_obj_type1(getId(), ref_type, ref); - if (obj_type == H5G_UNKNOWN) - { + H5G_obj_t obj_type = H5Rget_obj_type1(getId(), ref_type, ref); + if (obj_type == H5G_UNKNOWN) { throw ReferenceException(inMemFunc("getObjType"), "H5Rget_obj_type1 failed"); } - return(obj_type); + return (obj_type); } #endif // DOXYGEN_SHOULD_SKIP_THIS + #endif /* H5_NO_DEPRECATED_SYMBOLS */ //-------------------------------------------------------------------------- @@ -645,12 +666,13 @@ H5G_obj_t H5Location::p_get_obj_type(void *ref, H5R_type_t ref_type) const ///\exception H5::ReferenceException // Programmer Binh-Minh Ribler - May, 2004 //-------------------------------------------------------------------------- -H5O_type_t H5Location::getRefObjType(void *ref, H5R_type_t ref_type) const +H5O_type_t +H5Location::getRefObjType(void *ref, H5R_type_t ref_type) const { try { - return(p_get_ref_obj_type(ref, ref_type)); + return (p_get_ref_obj_type(ref, ref_type)); } - catch (ReferenceException& E) { + catch (ReferenceException &E) { throw ReferenceException(inMemFunc("getRefObjType"), E.getDetailMsg()); } } @@ -671,21 +693,20 @@ H5O_type_t H5Location::getRefObjType(void *ref, H5R_type_t ref_type) const // Exception H5::ReferenceException // Programmer Binh-Minh Ribler - May, 2004 //-------------------------------------------------------------------------- -H5O_type_t H5Location::p_get_ref_obj_type(void *ref, H5R_type_t ref_type) const +H5O_type_t +H5Location::p_get_ref_obj_type(void *ref, H5R_type_t ref_type) const { - H5O_type_t obj_type = H5O_TYPE_UNKNOWN; - herr_t ret_value = H5Rget_obj_type2(getId(), ref_type, ref, &obj_type); - if (ret_value < 0) - { + H5O_type_t obj_type = H5O_TYPE_UNKNOWN; + herr_t ret_value = H5Rget_obj_type2(getId(), ref_type, ref, &obj_type); + if (ret_value < 0) { throw ReferenceException(inMemFunc("getRefObjType"), "H5Rget_obj_type2 failed"); } - if (obj_type == H5O_TYPE_UNKNOWN || obj_type >= H5O_TYPE_NTYPES) - { + if (obj_type == H5O_TYPE_UNKNOWN || obj_type >= H5O_TYPE_NTYPES) { throw ReferenceException(inMemFunc("getRefObjType"), "H5Rget_obj_type2 returned invalid type"); } - return(obj_type); + return (obj_type); } - +#endif // DOXYGEN_SHOULD_SKIP_THIS //-------------------------------------------------------------------------- // Function: H5Location::getRegion @@ -703,24 +724,23 @@ H5O_type_t H5Location::p_get_ref_obj_type(void *ref, H5R_type_t ref_type) const // ref count, as a work-around for a problem described in the JIRA // issue HDFFV-7947. -BMR //-------------------------------------------------------------------------- -DataSpace H5Location::getRegion(void *ref, H5R_type_t ref_type) const +DataSpace +H5Location::getRegion(void *ref, H5R_type_t ref_type) const { hid_t space_id = H5Rget_region(getId(), ref_type, ref); - if (space_id < 0) - { + if (space_id < 0) { throw ReferenceException(inMemFunc("getRegion"), "H5Rget_region failed"); } try { DataSpace dataspace; f_DataSpace_setId(&dataspace, space_id); - return(dataspace); + return (dataspace); } - catch (DataSpaceIException& E) { + catch (DataSpaceIException &E) { throw ReferenceException(inMemFunc("getRegion"), E.getDetailMsg()); } } - // From H5CommonFG.cpp // Notes with "***Updated" are new and for Group.cpp // Original notes are from December 2000 @@ -768,7 +788,8 @@ DataSpace H5Location::getRegion(void *ref, H5R_type_t ref_type) const /// then a default size is chosen. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- -Group H5Location::createGroup(const char* name, const LinkCreatPropList& lcpl) const +Group +H5Location::createGroup(const char *name, const LinkCreatPropList &lcpl) const { // Call C routine H5Gcreate2 to create the named group, giving the // location id which can be a file id or a group id @@ -779,10 +800,10 @@ Group H5Location::createGroup(const char* name, const LinkCreatPropList& lcpl) c throwException("createGroup", "H5Gcreate2 failed"); // No failure, create and return the Group object - Group group; + Group group; H5Location *ptr = &group; ptr->p_setId(group_id); - return(group); + return (group); } //-------------------------------------------------------------------------- @@ -792,9 +813,10 @@ Group H5Location::createGroup(const char* name, const LinkCreatPropList& lcpl) c /// \c H5std_string for \a name. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- -Group H5Location::createGroup(const H5std_string& name, const LinkCreatPropList& lcpl) const +Group +H5Location::createGroup(const H5std_string &name, const LinkCreatPropList &lcpl) const { - return(createGroup( name.c_str(), lcpl)); + return (createGroup(name.c_str(), lcpl)); } //-------------------------------------------------------------------------- @@ -813,22 +835,22 @@ Group H5Location::createGroup(const H5std_string& name, const LinkCreatPropList& /// then a default size is chosen. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- -Group H5Location::createGroup(const char* name, size_t size_hint) const +Group +H5Location::createGroup(const char *name, size_t size_hint) const { // Group creation property list for size hint hid_t gcpl_id = 0; // Set the local heap size hint - if (size_hint > 0) - { - // If the creation of the property list failed, throw an exception - if ((gcpl_id = H5Pcreate(H5P_GROUP_CREATE)) < 0) - throwException("createGroup", "H5Pcreate failed"); - - if (H5Pset_local_heap_size_hint(gcpl_id, size_hint) < 0) { - H5Pclose(gcpl_id); - throwException("createGroup", "H5Pset_local_heap_size_hint failed"); - } + if (size_hint > 0) { + // If the creation of the property list failed, throw an exception + if ((gcpl_id = H5Pcreate(H5P_GROUP_CREATE)) < 0) + throwException("createGroup", "H5Pcreate failed"); + + if (H5Pset_local_heap_size_hint(gcpl_id, size_hint) < 0) { + H5Pclose(gcpl_id); + throwException("createGroup", "H5Pset_local_heap_size_hint failed"); + } } // Call C routine H5Gcreate2 to create the named group, giving the @@ -836,18 +858,18 @@ Group H5Location::createGroup(const char* name, size_t size_hint) const hid_t group_id = H5Gcreate2(getId(), name, H5P_DEFAULT, gcpl_id, H5P_DEFAULT); // Close the group creation property list, if necessary - if(gcpl_id > 0) - H5Pclose(gcpl_id); + if (gcpl_id > 0) + H5Pclose(gcpl_id); // If the creation of the group failed, throw an exception if (group_id < 0) throwException("createGroup", "H5Gcreate2 failed"); // No failure, create and return the Group object - Group group; + Group group; H5Location *ptr = &group; ptr->p_setId(group_id); - return(group); + return (group); } //-------------------------------------------------------------------------- @@ -857,9 +879,10 @@ Group H5Location::createGroup(const char* name, size_t size_hint) const /// \c H5std_string for \a name. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- -Group H5Location::createGroup(const H5std_string& name, size_t size_hint) const +Group +H5Location::createGroup(const H5std_string &name, size_t size_hint) const { - return(createGroup( name.c_str(), size_hint)); + return (createGroup(name.c_str(), size_hint)); } //-------------------------------------------------------------------------- @@ -871,7 +894,8 @@ Group H5Location::createGroup(const H5std_string& name, size_t size_hint) const ///\exception H5::FileIException/H5::GroupIException/H5::LocationException // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- -Group H5Location::openGroup(const char* name) const +Group +H5Location::openGroup(const char *name) const { // Call C routine H5Gopen2 to open the named group, giving the // location id which can be a file id or a group id @@ -883,10 +907,10 @@ Group H5Location::openGroup(const char* name) const // No failure, create and return the Group object Group group; - //group.p_setId(group_id); + // group.p_setId(group_id); H5Location *ptr = &group; ptr->p_setId(group_id); - return(group); + return (group); } //-------------------------------------------------------------------------- @@ -896,9 +920,10 @@ Group H5Location::openGroup(const char* name) const /// \c H5std_string for \a name. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- -Group H5Location::openGroup(const H5std_string& name) const +Group +H5Location::openGroup(const H5std_string &name) const { - return(openGroup( name.c_str())); + return (openGroup(name.c_str())); } //-------------------------------------------------------------------------- @@ -919,14 +944,17 @@ Group H5Location::openGroup(const H5std_string& name) const // follow the order in the C function: lcpl, dcpl, dapl, to // accommodate the existing createDataSet calls. //-------------------------------------------------------------------------- -DataSet H5Location::createDataSet(const char* name, const DataType& data_type, const DataSpace& data_space, const DSetCreatPropList& dcpl, const DSetAccPropList& dapl, const LinkCreatPropList& lcpl) const +DataSet +H5Location::createDataSet(const char *name, const DataType &data_type, const DataSpace &data_space, + const DSetCreatPropList &dcpl, const DSetAccPropList &dapl, + const LinkCreatPropList &lcpl) const { - // Obtain identifiers for C API - hid_t type_id = data_type.getId(); + // Obtain identifiers for C API + hid_t type_id = data_type.getId(); hid_t space_id = data_space.getId(); - hid_t dcpl_id = dcpl.getId(); - hid_t lcpl_id = lcpl.getId(); - hid_t dapl_id = dapl.getId(); + hid_t dcpl_id = dcpl.getId(); + hid_t lcpl_id = lcpl.getId(); + hid_t dapl_id = dapl.getId(); // Call C routine H5Dcreate2 to create the named dataset hid_t dataset_id = H5Dcreate2(getId(), name, type_id, space_id, lcpl_id, dcpl_id, dapl_id); @@ -938,7 +966,7 @@ DataSet H5Location::createDataSet(const char* name, const DataType& data_type, c // No failure, create and return the DataSet object DataSet dataset; f_DataSet_setId(&dataset, dataset_id); - return(dataset); + return (dataset); } //-------------------------------------------------------------------------- @@ -953,9 +981,12 @@ DataSet H5Location::createDataSet(const char* name, const DataType& data_type, c // follow the order in the C function: lcpl, dcpl, dapl, to // accommodate the existing createDataSet calls. //-------------------------------------------------------------------------- -DataSet H5Location::createDataSet(const H5std_string& name, const DataType& data_type, const DataSpace& data_space, const DSetCreatPropList& dcpl, const DSetAccPropList& dapl, const LinkCreatPropList& lcpl) const +DataSet +H5Location::createDataSet(const H5std_string &name, const DataType &data_type, const DataSpace &data_space, + const DSetCreatPropList &dcpl, const DSetAccPropList &dapl, + const LinkCreatPropList &lcpl) const { - return(createDataSet(name.c_str(), data_type, data_space, dcpl, dapl, lcpl)); + return (createDataSet(name.c_str(), data_type, data_space, dcpl, dapl, lcpl)); } //-------------------------------------------------------------------------- @@ -969,21 +1000,22 @@ DataSet H5Location::createDataSet(const H5std_string& name, const DataType& data // Jul 2018 // Added DSetAccPropList argument //-------------------------------------------------------------------------- -DataSet H5Location::openDataSet(const char* name, const DSetAccPropList& dapl) const +DataSet +H5Location::openDataSet(const char *name, const DSetAccPropList &dapl) const { // Call C function H5Dopen2 to open the specified dataset, giving // the location id and the dataset's name - hid_t dapl_id = dapl.getId(); + hid_t dapl_id = dapl.getId(); hid_t dataset_id = H5Dopen2(getId(), name, dapl_id); // If the dataset's opening failed, throw an exception - if(dataset_id < 0) + if (dataset_id < 0) throwException("openDataSet", "H5Dopen2 failed"); // No failure, create and return the DataSet object DataSet dataset; f_DataSet_setId(&dataset, dataset_id); - return(dataset); + return (dataset); } //-------------------------------------------------------------------------- @@ -996,9 +1028,10 @@ DataSet H5Location::openDataSet(const char* name, const DSetAccPropList& dapl) c // Jul 2018 // Added DSetAccPropList argument //-------------------------------------------------------------------------- -DataSet H5Location::openDataSet(const H5std_string& name, const DSetAccPropList& dapl) const +DataSet +H5Location::openDataSet(const H5std_string &name, const DSetAccPropList &dapl) const { - return(openDataSet(name.c_str(), dapl)); + return (openDataSet(name.c_str(), dapl)); } //-------------------------------------------------------------------------- @@ -1016,12 +1049,13 @@ DataSet H5Location::openDataSet(const H5std_string& name, const DSetAccPropList& /// H5Lcreate_soft APIs in the HDF5 C Reference Manual. // March 2018 //-------------------------------------------------------------------------- -void H5Location::link(const char *target_name, const char *link_name, - const LinkCreatPropList& lcpl, const LinkAccPropList& lapl) const +void +H5Location::link(const char *target_name, const char *link_name, const LinkCreatPropList &lcpl, + const LinkAccPropList &lapl) const { herr_t ret_value = -1; - hid_t lcpl_id = lcpl.getId(); - hid_t lapl_id = lapl.getId(); + hid_t lcpl_id = lcpl.getId(); + hid_t lapl_id = lapl.getId(); ret_value = H5Lcreate_soft(target_name, getId(), link_name, lcpl_id, lapl_id); if (ret_value < 0) @@ -1036,8 +1070,9 @@ void H5Location::link(const char *target_name, const char *link_name, ///\exception H5::FileIException or H5::GroupIException // March, 2018 //-------------------------------------------------------------------------- -void H5Location::link(const H5std_string& target_name, const H5std_string& - link_name, const LinkCreatPropList& lcpl, const LinkAccPropList& lapl) const +void +H5Location::link(const H5std_string &target_name, const H5std_string &link_name, + const LinkCreatPropList &lcpl, const LinkAccPropList &lapl) const { link(target_name.c_str(), link_name.c_str(), lcpl, lapl); } @@ -1058,16 +1093,17 @@ void H5Location::link(const H5std_string& target_name, const H5std_string& /// H5Lcreate_hard APIs in the HDF5 C Reference Manual. // March 2018 //-------------------------------------------------------------------------- -void H5Location::link(const char *curr_name, const Group& new_loc, - const char *new_name, const LinkCreatPropList& lcpl, const LinkAccPropList& lapl) const +void +H5Location::link(const char *curr_name, const Group &new_loc, const char *new_name, + const LinkCreatPropList &lcpl, const LinkAccPropList &lapl) const { - herr_t ret_value = -1; - hid_t new_loc_id = new_loc.getId(); - hid_t lcpl_id = lcpl.getId(); - hid_t lapl_id = lapl.getId(); + herr_t ret_value = -1; + hid_t new_loc_id = new_loc.getId(); + hid_t lcpl_id = lcpl.getId(); + hid_t lapl_id = lapl.getId(); ret_value = H5Lcreate_hard(getId(), curr_name, new_loc_id, new_name, lcpl_id, lapl_id); - if (ret_value < 0) + if (ret_value < 0) throwException("link", "creating link failed"); } @@ -1079,8 +1115,9 @@ void H5Location::link(const char *curr_name, const Group& new_loc, ///\exception H5::FileIException or H5::GroupIException // March, 2018 //-------------------------------------------------------------------------- -void H5Location::link(const H5std_string& curr_name, const Group& new_loc, - const H5std_string& new_name, const LinkCreatPropList& lcpl, const LinkAccPropList& lapl) const +void +H5Location::link(const H5std_string &curr_name, const Group &new_loc, const H5std_string &new_name, + const LinkCreatPropList &lcpl, const LinkAccPropList &lapl) const { link(curr_name.c_str(), new_loc, new_name.c_str(), lcpl, lapl); } @@ -1102,15 +1139,17 @@ void H5Location::link(const H5std_string& curr_name, const Group& new_loc, /// H5Lcreate_hard APIs in the HDF5 C Reference Manual. // March 2018 //-------------------------------------------------------------------------- -void H5Location::link(const char *curr_name, const hid_t same_loc, const char *new_name, const LinkCreatPropList& lcpl, const LinkAccPropList& lapl) const +void +H5Location::link(const char *curr_name, const hid_t same_loc, const char *new_name, + const LinkCreatPropList &lcpl, const LinkAccPropList &lapl) const { herr_t ret_value = -1; - hid_t lcpl_id = lcpl.getId(); - hid_t lapl_id = lapl.getId(); + hid_t lcpl_id = lcpl.getId(); + hid_t lapl_id = lapl.getId(); ret_value = H5Lcreate_hard(getId(), curr_name, same_loc, new_name, lcpl_id, lapl_id); - if (ret_value < 0) + if (ret_value < 0) throwException("link", "creating link failed"); } @@ -1122,8 +1161,9 @@ void H5Location::link(const char *curr_name, const hid_t same_loc, const char *n ///\exception H5::FileIException or H5::GroupIException // March, 2018 //-------------------------------------------------------------------------- -void H5Location::link(const H5std_string& curr_name, const hid_t same_loc, - const H5std_string& new_name, const LinkCreatPropList& lcpl, const LinkAccPropList& lapl) const +void +H5Location::link(const H5std_string &curr_name, const hid_t same_loc, const H5std_string &new_name, + const LinkCreatPropList &lcpl, const LinkAccPropList &lapl) const { link(curr_name.c_str(), same_loc, new_name.c_str(), lcpl, lapl); } @@ -1152,17 +1192,18 @@ void H5Location::link(const H5std_string& curr_name, const hid_t same_loc, // H5L_SAME_LOC. This function will be retired in favor of // its replacement. - BMR //-------------------------------------------------------------------------- -void H5Location::link(H5L_type_t link_type, const char* curr_name, const char* new_name) const +void +H5Location::link(H5L_type_t link_type, const char *curr_name, const char *new_name) const { herr_t ret_value = -1; - switch(link_type) { + switch (link_type) { case H5L_TYPE_HARD: ret_value = H5Lcreate_hard(getId(), curr_name, H5L_SAME_LOC, new_name, H5P_DEFAULT, H5P_DEFAULT); break; case H5L_TYPE_SOFT: - ret_value = H5Lcreate_soft(curr_name,getId(), new_name, H5P_DEFAULT, H5P_DEFAULT); + ret_value = H5Lcreate_soft(curr_name, getId(), new_name, H5P_DEFAULT, H5P_DEFAULT); break; case H5L_TYPE_ERROR: @@ -1173,7 +1214,7 @@ void H5Location::link(H5L_type_t link_type, const char* curr_name, const char* n break; } /* end switch */ - if (ret_value < 0) + if (ret_value < 0) throwException("link", "creating link failed"); } @@ -1184,7 +1225,8 @@ void H5Location::link(H5L_type_t link_type, const char* curr_name, const char* n /// \c H5std_string for \a curr_name and \a new_name. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- -void H5Location::link(H5L_type_t link_type, const H5std_string& curr_name, const H5std_string& new_name) const +void +H5Location::link(H5L_type_t link_type, const H5std_string &curr_name, const H5std_string &new_name) const { link(link_type, curr_name.c_str(), new_name.c_str()); } @@ -1200,17 +1242,17 @@ void H5Location::link(H5L_type_t link_type, const H5std_string& curr_name, const ///\exception H5::FileIException or H5::GroupIException // March, 2018 //-------------------------------------------------------------------------- -void H5Location::copyLink(const char *src_name, - const Group& dst, const char *dst_name, const LinkCreatPropList& lcpl, - const LinkAccPropList& lapl) const +void +H5Location::copyLink(const char *src_name, const Group &dst, const char *dst_name, + const LinkCreatPropList &lcpl, const LinkAccPropList &lapl) const { herr_t ret_value; - hid_t dst_id = dst.getId(); - hid_t lcpl_id = lcpl.getId(); - hid_t lapl_id = lapl.getId(); + hid_t dst_id = dst.getId(); + hid_t lcpl_id = lcpl.getId(); + hid_t lapl_id = lapl.getId(); ret_value = H5Lcopy(getId(), src_name, dst_id, dst_name, lcpl_id, lapl_id); - if(ret_value < 0) + if (ret_value < 0) throwException("copyLink", "H5Lcopy failed"); } @@ -1222,9 +1264,9 @@ void H5Location::copyLink(const char *src_name, ///\exception H5::FileIException or H5::GroupIException // March, 2018 //-------------------------------------------------------------------------- -void H5Location::copyLink(const H5std_string& src_name, - const Group& dst, const H5std_string& dst_name, const LinkCreatPropList& lcpl, - const LinkAccPropList& lapl) const +void +H5Location::copyLink(const H5std_string &src_name, const Group &dst, const H5std_string &dst_name, + const LinkCreatPropList &lcpl, const LinkAccPropList &lapl) const { copyLink(src_name.c_str(), dst, dst_name.c_str(), lcpl, lapl); } @@ -1239,16 +1281,16 @@ void H5Location::copyLink(const H5std_string& src_name, ///\exception H5::FileIException or H5::GroupIException // March, 2018 //-------------------------------------------------------------------------- -void H5Location::copyLink(const char *src_name, - const char *dst_name, const LinkCreatPropList& lcpl, - const LinkAccPropList& lapl) const +void +H5Location::copyLink(const char *src_name, const char *dst_name, const LinkCreatPropList &lcpl, + const LinkAccPropList &lapl) const { herr_t ret_value; - hid_t lcpl_id = lcpl.getId(); - hid_t lapl_id = lapl.getId(); + hid_t lcpl_id = lcpl.getId(); + hid_t lapl_id = lapl.getId(); ret_value = H5Lcopy(getId(), src_name, H5L_SAME_LOC, dst_name, lcpl_id, lapl_id); - if(ret_value < 0) + if (ret_value < 0) throwException("copyLink", "H5Lcopy H5L_SAME_LOC failed"); } @@ -1260,9 +1302,9 @@ void H5Location::copyLink(const char *src_name, ///\exception H5::FileIException or H5::GroupIException // March, 2018 //-------------------------------------------------------------------------- -void H5Location::copyLink(const H5std_string& src_name, - const H5std_string& dst_name, const LinkCreatPropList& lcpl, - const LinkAccPropList& lapl) const +void +H5Location::copyLink(const H5std_string &src_name, const H5std_string &dst_name, + const LinkCreatPropList &lcpl, const LinkAccPropList &lapl) const { copyLink(src_name.c_str(), dst_name.c_str(), lcpl, lapl); } @@ -1282,12 +1324,14 @@ void H5Location::copyLink(const H5std_string& src_name, /// to the Group Interface in the HDF5 User's Guide for details. // March, 2018 //-------------------------------------------------------------------------- -void H5Location::moveLink(const char* src_name, const Group& dst, const char* dst_name, const LinkCreatPropList& lcpl, const LinkAccPropList& lapl) const +void +H5Location::moveLink(const char *src_name, const Group &dst, const char *dst_name, + const LinkCreatPropList &lcpl, const LinkAccPropList &lapl) const { herr_t ret_value; - hid_t dst_id = dst.getId(); - hid_t lcpl_id = lcpl.getId(); - hid_t lapl_id = lapl.getId(); + hid_t dst_id = dst.getId(); + hid_t lcpl_id = lcpl.getId(); + hid_t lapl_id = lapl.getId(); ret_value = H5Lmove(getId(), src_name, dst_id, dst_name, lcpl_id, lapl_id); if (ret_value < 0) @@ -1302,7 +1346,9 @@ void H5Location::moveLink(const char* src_name, const Group& dst, const char* ds ///\exception H5::FileIException or H5::GroupIException // March, 2018 //-------------------------------------------------------------------------- -void H5Location::moveLink(const H5std_string& src_name, const Group& dst, const H5std_string& dst_name, const LinkCreatPropList& lcpl, const LinkAccPropList& lapl) const +void +H5Location::moveLink(const H5std_string &src_name, const Group &dst, const H5std_string &dst_name, + const LinkCreatPropList &lcpl, const LinkAccPropList &lapl) const { moveLink(src_name.c_str(), dst, dst_name.c_str(), lcpl, lapl); } @@ -1321,11 +1367,13 @@ void H5Location::moveLink(const H5std_string& src_name, const Group& dst, const /// to the Group Interface in the HDF5 User's Guide for details. // March, 2018 //-------------------------------------------------------------------------- -void H5Location::moveLink(const char* src_name, const char* dst_name, const LinkCreatPropList& lcpl, const LinkAccPropList& lapl) const +void +H5Location::moveLink(const char *src_name, const char *dst_name, const LinkCreatPropList &lcpl, + const LinkAccPropList &lapl) const { herr_t ret_value; - hid_t lcpl_id = lcpl.getId(); - hid_t lapl_id = lapl.getId(); + hid_t lcpl_id = lcpl.getId(); + hid_t lapl_id = lapl.getId(); ret_value = H5Lmove(getId(), src_name, H5L_SAME_LOC, dst_name, lcpl_id, lapl_id); if (ret_value < 0) @@ -1340,7 +1388,9 @@ void H5Location::moveLink(const char* src_name, const char* dst_name, const Link ///\exception H5::FileIException or H5::GroupIException // March, 2018 //-------------------------------------------------------------------------- -void H5Location::moveLink(const H5std_string& src_name, const H5std_string& dst_name, const LinkCreatPropList& lcpl, const LinkAccPropList& lapl) const +void +H5Location::moveLink(const H5std_string &src_name, const H5std_string &dst_name, + const LinkCreatPropList &lcpl, const LinkAccPropList &lapl) const { moveLink(src_name.c_str(), dst_name.c_str(), lcpl, lapl); } @@ -1359,7 +1409,8 @@ void H5Location::moveLink(const H5std_string& src_name, const H5std_string& dst_ // 2007: QAK modified to use H5L APIs - BMR // 2018: Will be replaced by H5Location::moveLink() -BMR //-------------------------------------------------------------------------- -void H5Location::move(const char* src, const char* dst) const +void +H5Location::move(const char *src, const char *dst) const { moveLink(src, dst, LinkCreatPropList::DEFAULT, LinkAccPropList::DEFAULT); } @@ -1372,7 +1423,8 @@ void H5Location::move(const char* src, const char* dst) const // Modification // 2018: Will be replaced by H5Location::moveLink() -BMR //-------------------------------------------------------------------------- -void H5Location::move(const H5std_string& src, const H5std_string& dst) const +void +H5Location::move(const H5std_string &src, const H5std_string &dst) const { moveLink(src.c_str(), dst.c_str(), LinkCreatPropList::DEFAULT, LinkAccPropList::DEFAULT); } @@ -1384,7 +1436,8 @@ void H5Location::move(const H5std_string& src, const H5std_string& dst) const ///\exception H5::FileIException/H5::GroupIException/H5::LocationException // March, 2018 //-------------------------------------------------------------------------- -void H5Location::unlink(const char* name, const LinkAccPropList& lapl) const +void +H5Location::unlink(const char *name, const LinkAccPropList &lapl) const { herr_t ret_value = H5Ldelete(getId(), name, lapl.getId()); if (ret_value < 0) @@ -1398,12 +1451,134 @@ void H5Location::unlink(const char* name, const LinkAccPropList& lapl) const /// \c H5std_string for \a name. // March, 2018 //-------------------------------------------------------------------------- -void H5Location::unlink(const H5std_string& name, const LinkAccPropList& lapl) const +void +H5Location::unlink(const H5std_string &name, const LinkAccPropList &lapl) const { unlink(name.c_str(), lapl); } //-------------------------------------------------------------------------- +// Function: H5Location::getNativeObjinfo +///\brief Retrieves native information about an HDF5 object. +///\param objinfo - OUT: Struct containing the native object info +///\param fields - IN: Indicates the group of information to be retrieved +///\par Description +/// Valid values of \a fields are as follows: +/// \li \c H5O_INFO_HDR (default) +/// \li \c H5O_INFO_META_SIZE +/// \li \c H5O_INFO_ALL +// July, 2018 +//-------------------------------------------------------------------------- +void +H5Location::getNativeObjinfo(H5O_native_info_t &objinfo, unsigned fields) const +{ + + // Use C API to get information of the object + herr_t ret_value = H5Oget_native_info(getId(), &objinfo, fields); + + // Throw exception if C API returns failure + if (ret_value < 0) + throwException(inMemFunc("getNativeObjinfo"), "H5Oget_native_info failed"); +} + +//-------------------------------------------------------------------------- +// Function: H5Location::getNativeObjinfo +///\brief Retrieves native information about an HDF5 object given its name. +///\param name - IN: Name of the object to be queried - \c char * +///\param objinfo - OUT: Struct containing the native object info +///\param fields - IN: Indicates the group of information to be retrieved +/// - default to H5O_INFO_HDR +///\param lapl - IN: Link access property list +///\par Description +/// Valid values of \a fields are as follows: +/// \li \c H5O_INFO_HDR (default) +/// \li \c H5O_INFO_META_SIZE +/// \li \c H5O_INFO_ALL +// July, 2018 +//-------------------------------------------------------------------------- +void +H5Location::getNativeObjinfo(const char *name, H5O_native_info_t &objinfo, unsigned fields, + const LinkAccPropList &lapl) const +{ + // Use C API to get information of the object + herr_t ret_value = H5Oget_native_info_by_name(getId(), name, &objinfo, fields, lapl.getId()); + + // Throw exception if C API returns failure + if (ret_value < 0) + throwException(inMemFunc("getNativeObjinfo"), "H5Oget_native_info_by_name failed"); +} + +//-------------------------------------------------------------------------- +// Function: H5Location::getNativeObjinfo +///\brief This is an overloaded member function, provided for convenience. +/// It differs from the above function in that it takes +/// a reference to an \c H5std_string for \a name. +///\param name - IN: Name of the object to be queried - \c H5std_string +///\param objinfo - OUT: Struct containing the native object info +///\param fields - IN: Indicates the group of information to be retrieved +/// - default to H5O_INFO_HDR +///\param lapl - IN: Link access property list +// July, 2018 +//-------------------------------------------------------------------------- +void +H5Location::getNativeObjinfo(const H5std_string &name, H5O_native_info_t &objinfo, unsigned fields, + const LinkAccPropList &lapl) const +{ + getNativeObjinfo(name.c_str(), objinfo, fields, lapl); +} + +//-------------------------------------------------------------------------- +// Function: H5Location::getNativeObjinfo +///\brief Retrieves native information about an HDF5 object given its index. +///\param grp_name - IN: Group name where the object belongs - \c char * +///\param idx_type - IN: Type of index +///\param order - IN: Order to traverse +///\param idx - IN: Object position +///\param objinfo - OUT: Struct containing the native object info +///\param fields - IN: Indicates the group of information to be retrieved +/// - default to H5O_INFO_HDR +///\param lapl - IN: Link access property list +///\par Description +/// Valid values of \a fields are as follows: +/// \li \c H5O_INFO_HDR (default) +/// \li \c H5O_INFO_META_SIZE +/// \li \c H5O_INFO_ALL +// July, 2018 +//-------------------------------------------------------------------------- +void +H5Location::getNativeObjinfo(const char *grp_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t idx, + H5O_native_info_t &objinfo, unsigned fields, const LinkAccPropList &lapl) const +{ + // Use C API to get information of the object + herr_t ret_value = + H5Oget_native_info_by_idx(getId(), grp_name, idx_type, order, idx, &objinfo, fields, lapl.getId()); + + // Throw exception if C API returns failure + if (ret_value < 0) + throwException(inMemFunc("getNativeObjinfo"), "H5Oget_native_info_by_idx failed"); +} + +//-------------------------------------------------------------------------- +// Function: H5Location::getObjinfo +///\brief This is an overloaded member function, provided for convenience. +/// It differs from the above function in that it takes +/// a reference to an \c H5std_string for \a name. +///\param name - IN: Name of the object to be queried - \c H5std_string +///\param objinfo - OUT: Struct containing the native object info +///\param fields - IN: Indicates a group of information to be retrieved +/// - default to H5O_INFO_HDR +///\param lapl - IN: Link access property list +// July, 2018 +//-------------------------------------------------------------------------- +void +H5Location::getNativeObjinfo(const H5std_string &grp_name, H5_index_t idx_type, H5_iter_order_t order, + hsize_t idx, H5O_native_info_t &objinfo, unsigned fields, + const LinkAccPropList &lapl) const +{ + getNativeObjinfo(grp_name.c_str(), idx_type, order, idx, objinfo, fields, lapl); +} + +//-------------------------------------------------------------------------- // Function: H5Location::getObjinfo ///\brief Retrieves information about an HDF5 object. ///\param objinfo - OUT: Struct containing the object info @@ -1418,15 +1593,16 @@ void H5Location::unlink(const H5std_string& name, const LinkAccPropList& lapl) c /// \li \c H5O_INFO_ALL // July, 2018 //-------------------------------------------------------------------------- -void H5Location::getObjinfo(H5O_info_t& objinfo, unsigned fields) const +void +H5Location::getObjinfo(H5O_info2_t &objinfo, unsigned fields) const { // Use C API to get information of the object - herr_t ret_value = H5Oget_info2(getId(), &objinfo, fields); + herr_t ret_value = H5Oget_info3(getId(), &objinfo, fields); // Throw exception if C API returns failure if (ret_value < 0) - throwException(inMemFunc("getObjinfo"), "H5Oget_info2 failed"); + throwException(inMemFunc("getObjinfo"), "H5Oget_info3 failed"); } //-------------------------------------------------------------------------- @@ -1447,10 +1623,12 @@ void H5Location::getObjinfo(H5O_info_t& objinfo, unsigned fields) const /// \li \c H5O_INFO_ALL // July, 2018 //-------------------------------------------------------------------------- -void H5Location::getObjinfo(const char* name, H5O_info_t& objinfo, unsigned fields, const LinkAccPropList& lapl) const +void +H5Location::getObjinfo(const char *name, H5O_info2_t &objinfo, unsigned fields, + const LinkAccPropList &lapl) const { // Use C API to get information of the object - herr_t ret_value = H5Oget_info_by_name2(getId(), name, &objinfo, fields, lapl.getId()); + herr_t ret_value = H5Oget_info_by_name3(getId(), name, &objinfo, fields, lapl.getId()); // Throw exception if C API returns failure if (ret_value < 0) @@ -1469,7 +1647,9 @@ void H5Location::getObjinfo(const char* name, H5O_info_t& objinfo, unsigned fiel ///\param lapl - IN: Link access property list // July, 2018 //-------------------------------------------------------------------------- -void H5Location::getObjinfo(const H5std_string& name, H5O_info_t& objinfo, unsigned fields, const LinkAccPropList& lapl) const +void +H5Location::getObjinfo(const H5std_string &name, H5O_info2_t &objinfo, unsigned fields, + const LinkAccPropList &lapl) const { getObjinfo(name.c_str(), objinfo, fields, lapl); } @@ -1495,13 +1675,13 @@ void H5Location::getObjinfo(const H5std_string& name, H5O_info_t& objinfo, unsig /// \li \c H5O_INFO_ALL // July, 2018 //-------------------------------------------------------------------------- -void H5Location::getObjinfo(const char* grp_name, H5_index_t idx_type, - H5_iter_order_t order, hsize_t idx, H5O_info_t& objinfo, unsigned fields, - const LinkAccPropList& lapl) const +void +H5Location::getObjinfo(const char *grp_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t idx, + H5O_info2_t &objinfo, unsigned fields, const LinkAccPropList &lapl) const { // Use C API to get information of the object - herr_t ret_value = H5Oget_info_by_idx2(getId(), grp_name, idx_type, order, - idx, &objinfo, fields, lapl.getId()); + herr_t ret_value = + H5Oget_info_by_idx3(getId(), grp_name, idx_type, order, idx, &objinfo, fields, lapl.getId()); // Throw exception if C API returns failure if (ret_value < 0) @@ -1520,9 +1700,9 @@ void H5Location::getObjinfo(const char* grp_name, H5_index_t idx_type, ///\param lapl - IN: Link access property list // July, 2018 //-------------------------------------------------------------------------- -void H5Location::getObjinfo(const H5std_string& grp_name, H5_index_t idx_type, - H5_iter_order_t order, hsize_t idx, H5O_info_t& objinfo, unsigned fields, - const LinkAccPropList& lapl) const +void +H5Location::getObjinfo(const H5std_string &grp_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t idx, + H5O_info2_t &objinfo, unsigned fields, const LinkAccPropList &lapl) const { getObjinfo(grp_name.c_str(), idx_type, order, idx, objinfo, fields, lapl); } @@ -1540,7 +1720,8 @@ void H5Location::getObjinfo(const H5std_string& grp_name, H5_index_t idx_type, /// the HDF5 C Reference Manual. // 2000 //-------------------------------------------------------------------------- -void H5Location::getObjinfo(const char* name, hbool_t follow_link, H5G_stat_t& statbuf) const +void +H5Location::getObjinfo(const char *name, hbool_t follow_link, H5G_stat_t &statbuf) const { herr_t ret_value = H5Gget_objinfo(getId(), name, follow_link, &statbuf); if (ret_value < 0) @@ -1554,7 +1735,8 @@ void H5Location::getObjinfo(const char* name, hbool_t follow_link, H5G_stat_t& s /// \c H5std_string for \a name. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- -void H5Location::getObjinfo(const H5std_string& name, hbool_t follow_link, H5G_stat_t& statbuf) const +void +H5Location::getObjinfo(const H5std_string &name, hbool_t follow_link, H5G_stat_t &statbuf) const { getObjinfo(name.c_str(), follow_link, statbuf); } @@ -1563,10 +1745,11 @@ void H5Location::getObjinfo(const H5std_string& name, hbool_t follow_link, H5G_s // Function: H5Location::getObjinfo ///\brief This is an overloaded member function, provided for convenience. /// It differs from the above functions in that it doesn't have -/// the paramemter \a follow_link. +/// the parameter \a follow_link. // Nov, 2005 //-------------------------------------------------------------------------- -void H5Location::getObjinfo(const char* name, H5G_stat_t& statbuf) const +void +H5Location::getObjinfo(const char *name, H5G_stat_t &statbuf) const { herr_t ret_value = H5Gget_objinfo(getId(), name, 0, &statbuf); if (ret_value < 0) @@ -1580,7 +1763,8 @@ void H5Location::getObjinfo(const char* name, H5G_stat_t& statbuf) const /// \c H5std_string for \a name. // Programmer Binh-Minh Ribler - Nov, 2005 //-------------------------------------------------------------------------- -void H5Location::getObjinfo(const H5std_string& name, H5G_stat_t& statbuf) const +void +H5Location::getObjinfo(const H5std_string &name, H5G_stat_t &statbuf) const { getObjinfo(name.c_str(), statbuf); } @@ -1596,15 +1780,16 @@ void H5Location::getObjinfo(const H5std_string& name, H5G_stat_t& statbuf) const ///\exception H5::FileIException/H5::GroupIException/H5::LocationException // 2000 //-------------------------------------------------------------------------- -H5L_info_t H5Location::getLinkInfo(const char* link_name, const LinkAccPropList& lapl) const +H5L_info2_t +H5Location::getLinkInfo(const char *link_name, const LinkAccPropList &lapl) const { - H5L_info_t linkinfo; // link info structure + H5L_info2_t linkinfo; // link info structure - herr_t ret_value = H5Lget_info(getId(), link_name, &linkinfo, lapl.getId()); + herr_t ret_value = H5Lget_info2(getId(), link_name, &linkinfo, lapl.getId()); if (ret_value < 0) throwException("getLinkInfo", "H5Lget_info to find buffer size failed"); - return(linkinfo); + return (linkinfo); } //-------------------------------------------------------------------------- @@ -1613,9 +1798,10 @@ H5L_info_t H5Location::getLinkInfo(const char* link_name, const LinkAccPropList& /// It differs from the above function in that it takes an /// \c H5std_string for \a link_name. //-------------------------------------------------------------------------- -H5L_info_t H5Location::getLinkInfo(const H5std_string& link_name, const LinkAccPropList& lapl) const +H5L_info2_t +H5Location::getLinkInfo(const H5std_string &link_name, const LinkAccPropList &lapl) const { - return(getLinkInfo(link_name.c_str(), lapl)); + return (getLinkInfo(link_name.c_str(), lapl)); } //-------------------------------------------------------------------------- @@ -1627,18 +1813,18 @@ H5L_info_t H5Location::getLinkInfo(const H5std_string& link_name, const LinkAccP ///\exception H5::FileIException/H5::GroupIException/H5::LocationException // 2000 //-------------------------------------------------------------------------- -H5std_string H5Location::getLinkval(const char* name, size_t size) const +H5std_string +H5Location::getLinkval(const char *name, size_t size) const { - H5L_info_t linkinfo; - char *value_C; // value in C string - size_t val_size = size; - H5std_string value = ""; - herr_t ret_value; + H5L_info2_t linkinfo; + char * value_C; // value in C string + size_t val_size = size; + H5std_string value; + herr_t ret_value; // if user doesn't provide buffer size, determine it - if (size == 0) - { - ret_value = H5Lget_info(getId(), name, &linkinfo, H5P_DEFAULT); + if (size == 0) { + ret_value = H5Lget_info2(getId(), name, &linkinfo, H5P_DEFAULT); if (ret_value < 0) throwException("getLinkval", "H5Lget_info to find buffer size failed"); @@ -1646,22 +1832,20 @@ H5std_string H5Location::getLinkval(const char* name, size_t size) const } // if link has value, retrieve the value, otherwise, return null string - if (val_size > 0) - { - value_C = new char[val_size+1]; // temporary C-string for C API - HDmemset(value_C, 0, val_size+1); // clear buffer + if (val_size > 0) { + // Create buffer for C string + value_C = new char[val_size + 1](); ret_value = H5Lget_val(getId(), name, value_C, val_size, H5P_DEFAULT); - if (ret_value < 0) - { - delete []value_C; + if (ret_value < 0) { + delete[] value_C; throwException("getLinkval", "H5Lget_val failed"); } value = H5std_string(value_C); - delete []value_C; + delete[] value_C; } - return(value); + return (value); } //-------------------------------------------------------------------------- @@ -1671,9 +1855,10 @@ H5std_string H5Location::getLinkval(const char* name, size_t size) const /// \c H5std_string for \a name. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- -H5std_string H5Location::getLinkval(const H5std_string& name, size_t size) const +H5std_string +H5Location::getLinkval(const H5std_string &name, size_t size) const { - return(getLinkval( name.c_str(), size)); + return (getLinkval(name.c_str(), size)); } //-------------------------------------------------------------------------- @@ -1685,7 +1870,8 @@ H5std_string H5Location::getLinkval(const H5std_string& name, size_t size) const ///\exception H5::FileIException or H5::GroupIException // Programmer Binh-Minh Ribler - 2014 (original 2000) //-------------------------------------------------------------------------- -void H5Location::mount(const char* name, const H5File& child, const PropList& plist) const +void +H5Location::mount(const char *name, const H5File &child, const PropList &plist) const { // Obtain identifiers for C API hid_t plist_id = plist.getId(); @@ -1714,7 +1900,7 @@ void H5Location::mount(const char* name, const H5File& child, const PropList& pl // Removed from documentation. -BMR, 2016/03/07 1.8.17 and 1.10.0 // Removed from code. -BMR, 2016/08/11 1.8.18 and 1.10.1 //-------------------------------------------------------------------------- -//void H5Location::mount(const char* name, H5File& child, PropList& plist) const +// void H5Location::mount(const char* name, H5File& child, PropList& plist) const //{ // mount(name, child, plist); //} @@ -1725,7 +1911,8 @@ void H5Location::mount(const char* name, const H5File& child, const PropList& pl /// It takes an \c H5std_string for \a name. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- -void H5Location::mount(const H5std_string& name, const H5File& child, const PropList& plist) const +void +H5Location::mount(const H5std_string &name, const H5File &child, const PropList &plist) const { mount(name.c_str(), child, plist); } @@ -1741,7 +1928,7 @@ void H5Location::mount(const H5std_string& name, const H5File& child, const Prop // Removed from documentation. -BMR, 2016/03/07 1.8.17 and 1.10.0 // Removed from code. -BMR, 2016/08/11 1.8.18 and 1.10.1 //-------------------------------------------------------------------------- -//void H5Location::mount(const H5std_string& name, H5File& child, PropList& plist) const +// void H5Location::mount(const H5std_string& name, H5File& child, PropList& plist) const //{ // mount(name.c_str(), child, plist); //} @@ -1753,7 +1940,8 @@ void H5Location::mount(const H5std_string& name, const H5File& child, const Prop ///\exception H5::FileIException/H5::GroupIException/H5::LocationException // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- -void H5Location::unmount(const char* name) const +void +H5Location::unmount(const char *name) const { // Call C routine H5Fmount to do the mouting herr_t ret_value = H5Funmount(getId(), name); @@ -1770,7 +1958,8 @@ void H5Location::unmount(const char* name) const /// \c H5std_string for \a name. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- -void H5Location::unmount(const H5std_string& name) const +void +H5Location::unmount(const H5std_string &name) const { unmount(name.c_str()); } @@ -1789,14 +1978,14 @@ void H5Location::unmount(const H5std_string& name) const ///\exception H5::FileIException/H5::GroupIException/H5::LocationException // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- -int H5Location::iterateElems(const char* name, int *idx, H5G_iterate_t op , void* op_data) +int +H5Location::iterateElems(const char *name, int *idx, H5G_iterate_t op, void *op_data) { int ret_value = H5Giterate(getId(), name, idx, op, op_data); - if (ret_value < 0) - { + if (ret_value < 0) { throwException("iterateElems", "H5Giterate failed"); } - return(ret_value); + return (ret_value); } //-------------------------------------------------------------------------- @@ -1806,9 +1995,10 @@ int H5Location::iterateElems(const char* name, int *idx, H5G_iterate_t op , void /// \c H5std_string for \a name. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- -int H5Location::iterateElems(const H5std_string& name, int *idx, H5G_iterate_t op , void* op_data) +int +H5Location::iterateElems(const H5std_string &name, int *idx, H5G_iterate_t op, void *op_data) { - return(iterateElems( name.c_str(), idx, op, op_data)); + return (iterateElems(name.c_str(), idx, op, op_data)); } #endif /* H5_NO_DEPRECATED_SYMBOLS */ @@ -1819,12 +2009,13 @@ int H5Location::iterateElems(const H5std_string& name, int *idx, H5G_iterate_t o ///\exception Deprecated // Programmer Binh-Minh Ribler - January, 2003 //-------------------------------------------------------------------------- -hsize_t H5Location::getNumObjs() const +hsize_t +H5Location::getNumObjs() const { - H5G_info_t ginfo; // Group information + H5G_info_t ginfo; // Group information herr_t ret_value = H5Gget_info(getId(), &ginfo); - if(ret_value < 0) + if (ret_value < 0) throwException("getNumObjs", "H5Gget_info failed"); return (ginfo.nlinks); } @@ -1844,28 +2035,29 @@ hsize_t H5Location::getNumObjs() const /// each time the group is opened. // Programmer Binh-Minh Ribler - Mar, 2005 //-------------------------------------------------------------------------- -H5std_string H5Location::getObjnameByIdx(hsize_t idx) const +H5std_string +H5Location::getObjnameByIdx(hsize_t idx) const { // call H5Lget_name_by_idx with name as NULL to get its length - ssize_t name_len = H5Lget_name_by_idx(getId(), ".", H5_INDEX_NAME, H5_ITER_INC, idx, NULL, 0, H5P_DEFAULT); - if(name_len < 0) + ssize_t name_len = + H5Lget_name_by_idx(getId(), ".", H5_INDEX_NAME, H5_ITER_INC, idx, NULL, 0, H5P_DEFAULT); + if (name_len < 0) throwException("getObjnameByIdx", "H5Lget_name_by_idx failed"); - // now, allocate C buffer to get the name - char* name_C = new char[name_len+1]; - HDmemset(name_C, 0, name_len+1); // clear buffer + // Create buffer for C string + char *name_C = new char[name_len + 1](); - name_len = H5Lget_name_by_idx(getId(), ".", H5_INDEX_NAME, H5_ITER_INC, idx, name_C, name_len+1, H5P_DEFAULT); + name_len = + H5Lget_name_by_idx(getId(), ".", H5_INDEX_NAME, H5_ITER_INC, idx, name_C, name_len + 1, H5P_DEFAULT); - if (name_len < 0) - { - delete []name_C; + if (name_len < 0) { + delete[] name_C; throwException("getObjnameByIdx", "H5Lget_name_by_idx failed"); } // clean up and return the string H5std_string name = H5std_string(name_C); - delete []name_C; + delete[] name_C; return (name); } @@ -1886,10 +2078,12 @@ H5std_string H5Location::getObjnameByIdx(hsize_t idx) const /// each time the group is opened. // Programmer Binh-Minh Ribler - January, 2003 //-------------------------------------------------------------------------- -ssize_t H5Location::getObjnameByIdx(hsize_t idx, char* name, size_t size) const +ssize_t +H5Location::getObjnameByIdx(hsize_t idx, char *name, size_t size) const { - ssize_t name_len = H5Lget_name_by_idx(getId(), ".", H5_INDEX_NAME, H5_ITER_INC, idx, name, size, H5P_DEFAULT); - if(name_len < 0) + ssize_t name_len = + H5Lget_name_by_idx(getId(), ".", H5_INDEX_NAME, H5_ITER_INC, idx, name, size, H5P_DEFAULT); + if (name_len < 0) throwException("getObjnameByIdx", "H5Lget_name_by_idx failed"); return (name_len); @@ -1902,22 +2096,22 @@ ssize_t H5Location::getObjnameByIdx(hsize_t idx, char* name, size_t size) const /// \c H5std_string for \a name. // Programmer Binh-Minh Ribler - January, 2003 //-------------------------------------------------------------------------- -ssize_t H5Location::getObjnameByIdx(hsize_t idx, H5std_string& name, size_t size) const +ssize_t +H5Location::getObjnameByIdx(hsize_t idx, H5std_string &name, size_t size) const { - char* name_C = new char[size+1]; // temporary C-string for object name - HDmemset(name_C, 0, size+1); // clear buffer + // Create buffer for C string + char *name_C = new char[size + 1](); // call overloaded function to get the name - ssize_t name_len = getObjnameByIdx(idx, name_C, size+1); - if(name_len < 0) - { - delete []name_C; + ssize_t name_len = getObjnameByIdx(idx, name_C, size + 1); + if (name_len < 0) { + delete[] name_C; throwException("getObjnameByIdx", "H5Lget_name_by_idx failed"); } // clean up and return the string name = H5std_string(name_C); - delete []name_C; + delete[] name_C; return (name_len); } @@ -1939,32 +2133,33 @@ ssize_t H5Location::getObjnameByIdx(hsize_t idx, H5std_string& name, size_t size /// - object type is not one of the valid values above // Programmer Binh-Minh Ribler - April, 2014 //-------------------------------------------------------------------------- -H5O_type_t H5Location::childObjType(const char* objname) const +H5O_type_t +H5Location::childObjType(const char *objname) const { - H5O_info_t objinfo; - H5O_type_t objtype = H5O_TYPE_UNKNOWN; + H5O_info2_t objinfo; + H5O_type_t objtype = H5O_TYPE_UNKNOWN; // Use C API to get information of the object - herr_t ret_value = H5Oget_info_by_name2(getId(), objname, &objinfo, H5O_INFO_BASIC, H5P_DEFAULT); + herr_t ret_value = H5Oget_info_by_name3(getId(), objname, &objinfo, H5O_INFO_BASIC, H5P_DEFAULT); // Throw exception if C API returns failure if (ret_value < 0) throwException("childObjType", "H5Oget_info_by_name failed"); // Return a valid type or throw an exception for unknown type else - switch (objinfo.type) - { - case H5O_TYPE_GROUP: - case H5O_TYPE_DATASET: - case H5O_TYPE_NAMED_DATATYPE: - objtype = objinfo.type; - break; - case H5O_TYPE_UNKNOWN: - case H5O_TYPE_NTYPES: - default: - throwException("childObjType", "Unknown type of object"); + switch (objinfo.type) { + case H5O_TYPE_GROUP: + case H5O_TYPE_DATASET: + case H5O_TYPE_NAMED_DATATYPE: + objtype = objinfo.type; + break; + case H5O_TYPE_UNKNOWN: + case H5O_TYPE_NTYPES: + case H5O_TYPE_MAP: + default: + throwException("childObjType", "Unknown type of object"); } - return(objtype); + return (objtype); } //-------------------------------------------------------------------------- @@ -1977,11 +2172,12 @@ H5O_type_t H5Location::childObjType(const char* objname) const ///\exception H5::FileIException/H5::GroupIException/H5::LocationException // Programmer Binh-Minh Ribler - April, 2014 //-------------------------------------------------------------------------- -H5O_type_t H5Location::childObjType(const H5std_string& objname) const +H5O_type_t +H5Location::childObjType(const H5std_string &objname) const { // Use overloaded function H5O_type_t objtype = childObjType(objname.c_str()); - return(objtype); + return (objtype); } //-------------------------------------------------------------------------- @@ -2013,33 +2209,36 @@ H5O_type_t H5Location::childObjType(const H5std_string& objname) const // can be added later when needed. // Programmer Binh-Minh Ribler - April, 2014 //-------------------------------------------------------------------------- -H5O_type_t H5Location::childObjType(hsize_t index, H5_index_t index_type, H5_iter_order_t order, const char* objname) const +H5O_type_t +H5Location::childObjType(hsize_t index, H5_index_t index_type, H5_iter_order_t order, + const char *objname) const { - herr_t ret_value; - H5O_info_t objinfo; - H5O_type_t objtype = H5O_TYPE_UNKNOWN; + herr_t ret_value; + H5O_info2_t objinfo; + H5O_type_t objtype = H5O_TYPE_UNKNOWN; // Use C API to get information of the object - ret_value = H5Oget_info_by_idx2(getId(), objname, index_type, order, index, &objinfo, H5O_INFO_BASIC, H5P_DEFAULT); + ret_value = H5Oget_info_by_idx3(getId(), objname, index_type, order, index, &objinfo, H5O_INFO_BASIC, + H5P_DEFAULT); // Throw exception if C API returns failure if (ret_value < 0) throwException("childObjType", "H5Oget_info_by_idx failed"); // Return a valid type or throw an exception for unknown type else - switch (objinfo.type) - { - case H5O_TYPE_GROUP: - case H5O_TYPE_DATASET: - case H5O_TYPE_NAMED_DATATYPE: - objtype = objinfo.type; - break; - case H5O_TYPE_UNKNOWN: - case H5O_TYPE_NTYPES: - default: - throwException("childObjType", "Unknown type of object"); + switch (objinfo.type) { + case H5O_TYPE_GROUP: + case H5O_TYPE_DATASET: + case H5O_TYPE_NAMED_DATATYPE: + objtype = objinfo.type; + break; + case H5O_TYPE_UNKNOWN: + case H5O_TYPE_NTYPES: + case H5O_TYPE_MAP: + default: + throwException("childObjType", "Unknown type of object"); } - return(objtype); + return (objtype); } //-------------------------------------------------------------------------- @@ -2056,25 +2255,26 @@ H5O_type_t H5Location::childObjType(hsize_t index, H5_index_t index_type, H5_ite /// - version number is not one of the valid values above // Programmer Binh-Minh Ribler - April, 2014 //-------------------------------------------------------------------------- -unsigned H5Location::childObjVersion(const char* objname) const +unsigned +H5Location::childObjVersion(const char *objname) const { - H5O_info_t objinfo; - unsigned version = 0; + H5O_native_info_t objinfo; + unsigned version = 0; // Use C API to get information of the object - herr_t ret_value = H5Oget_info_by_name2(getId(), objname, &objinfo, H5O_INFO_HDR, H5P_DEFAULT); + herr_t ret_value = + H5Oget_native_info_by_name(getId(), objname, &objinfo, H5O_NATIVE_INFO_HDR, H5P_DEFAULT); // Throw exception if C API returns failure if (ret_value < 0) throwException("childObjVersion", "H5Oget_info_by_name failed"); // Return a valid version or throw an exception for invalid value - else - { + else { version = objinfo.hdr.version; if (version != H5O_VERSION_1 && version != H5O_VERSION_2) throwException("childObjVersion", "Invalid version for object"); } - return(version); + return (version); } //-------------------------------------------------------------------------- @@ -2087,15 +2287,15 @@ unsigned H5Location::childObjVersion(const char* objname) const ///\exception H5::FileIException/H5::GroupIException/H5::LocationException // Programmer Binh-Minh Ribler - April, 2014 //-------------------------------------------------------------------------- -unsigned H5Location::childObjVersion(const H5std_string& objname) const +unsigned +H5Location::childObjVersion(const H5std_string &objname) const { // Use overloaded function unsigned version = childObjVersion(objname.c_str()); - return(version); + return (version); } #ifndef H5_NO_DEPRECATED_SYMBOLS -#ifndef DOXYGEN_SHOULD_SKIP_THIS //-------------------------------------------------------------------------- // Function: H5Location::getObjTypeByIdx ///\brief Returns the type of an object in this group, given the @@ -2105,13 +2305,14 @@ unsigned H5Location::childObjVersion(const H5std_string& objname) const ///\exception H5::FileIException/H5::GroupIException/H5::LocationException // Programmer Binh-Minh Ribler - January, 2003 //-------------------------------------------------------------------------- -H5G_obj_t H5Location::getObjTypeByIdx(hsize_t idx) const +H5G_obj_t +H5Location::getObjTypeByIdx(hsize_t idx) const { - H5G_obj_t obj_type = H5Gget_objtype_by_idx(getId(), idx); - if (obj_type == H5G_UNKNOWN) + H5G_obj_t obj_type = H5Gget_objtype_by_idx(getId(), idx); + if (obj_type == H5G_UNKNOWN) throwException("getObjTypeByIdx", "H5Gget_objtype_by_idx failed"); - return (obj_type); + return (obj_type); } //-------------------------------------------------------------------------- @@ -2127,10 +2328,11 @@ H5G_obj_t H5Location::getObjTypeByIdx(hsize_t idx) const // Modification // Modified to use the other function. -BMR, 2016/03/07 //-------------------------------------------------------------------------- -H5G_obj_t H5Location::getObjTypeByIdx(hsize_t idx, char* type_name) const +H5G_obj_t +H5Location::getObjTypeByIdx(hsize_t idx, char *type_name) const { H5std_string stype_name(type_name); - return(getObjTypeByIdx(idx, stype_name)); + return (getObjTypeByIdx(idx, stype_name)); } //-------------------------------------------------------------------------- // Function: H5Location::getObjTypeByIdx @@ -2143,27 +2345,34 @@ H5G_obj_t H5Location::getObjTypeByIdx(hsize_t idx, char* type_name) const ///\exception H5::FileIException/H5::GroupIException/H5::LocationException // Programmer Binh-Minh Ribler - January, 2003 //-------------------------------------------------------------------------- -H5G_obj_t H5Location::getObjTypeByIdx(hsize_t idx, H5std_string& type_name) const +H5G_obj_t +H5Location::getObjTypeByIdx(hsize_t idx, H5std_string &type_name) const { H5G_obj_t obj_type = H5Gget_objtype_by_idx(getId(), idx); - switch (obj_type) - { - case H5G_LINK: type_name = H5std_string("symbolic link"); break; - case H5G_GROUP: type_name = H5std_string("group"); break; - case H5G_DATASET: type_name = H5std_string("dataset"); break; - case H5G_TYPE: type_name = H5std_string("datatype"); break; - case H5G_UNKNOWN: - case H5G_UDLINK: - case H5G_RESERVED_5: - case H5G_RESERVED_6: - case H5G_RESERVED_7: - default: - throwException("getObjTypeByIdx", "H5Gget_objtype_by_idx failed"); + switch (obj_type) { + case H5G_LINK: + type_name = H5std_string("symbolic link"); + break; + case H5G_GROUP: + type_name = H5std_string("group"); + break; + case H5G_DATASET: + type_name = H5std_string("dataset"); + break; + case H5G_TYPE: + type_name = H5std_string("datatype"); + break; + case H5G_UNKNOWN: + case H5G_UDLINK: + case H5G_RESERVED_5: + case H5G_RESERVED_6: + case H5G_RESERVED_7: + default: + throwException("getObjTypeByIdx", "H5Gget_objtype_by_idx failed"); } return (obj_type); } -#endif // DOXYGEN_SHOULD_SKIP_THIS #endif /* H5_NO_DEPRECATED_SYMBOLS */ //-------------------------------------------------------------------------- @@ -2179,7 +2388,8 @@ H5G_obj_t H5Location::getObjTypeByIdx(hsize_t idx, H5std_string& type_name) cons // maintain backward compatibility. For other subclasses, throw // LocationException. //-------------------------------------------------------------------------- -void H5Location::throwException(const H5std_string& func_name, const H5std_string& msg) const +void +H5Location::throwException(const H5std_string &func_name, const H5std_string &msg) const { throw LocationException(inMemFunc(func_name.c_str()), msg); } @@ -2210,7 +2420,8 @@ void H5Location::throwException(const H5std_string& func_name, const H5std_strin // param new_id - IN: New id to set // Programmer Binh-Minh Ribler - 2015 //-------------------------------------------------------------------------- -void f_DataSpace_setId(DataSpace* dspace, hid_t new_id) +void +f_DataSpace_setId(DataSpace *dspace, hid_t new_id) { dspace->p_setId(new_id); } @@ -2220,8 +2431,8 @@ void f_DataSpace_setId(DataSpace* dspace, hid_t new_id) ///\brief Noop destructor. // Programmer Binh-Minh Ribler - 2000 //-------------------------------------------------------------------------- -H5Location::~H5Location() {} - -#endif // DOXYGEN_SHOULD_SKIP_THIS +H5Location::~H5Location() +{ +} -} // end namespace +} // namespace H5 |