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-rw-r--r--c++/src/H5Attribute.cpp30
-rw-r--r--c++/src/H5DataSet.cpp24
-rw-r--r--c++/src/H5DataSpace.cpp57
-rw-r--r--c++/src/H5DataType.cpp32
-rw-r--r--c++/src/H5File.cpp30
-rw-r--r--c++/src/H5Group.cpp23
-rw-r--r--c++/src/H5IdComponent.cpp75
-rw-r--r--c++/src/H5Object.cpp2
-rw-r--r--c++/src/H5PredType.cpp7
-rw-r--r--c++/src/H5PropList.cpp49
10 files changed, 166 insertions, 163 deletions
diff --git a/c++/src/H5Attribute.cpp b/c++/src/H5Attribute.cpp
index 666de18..7547ca5 100644
--- a/c++/src/H5Attribute.cpp
+++ b/c++/src/H5Attribute.cpp
@@ -270,13 +270,16 @@ H5std_string Attribute::getName() const
//--------------------------------------------------------------------------
void Attribute::close()
{
- herr_t ret_value = H5Aclose(id);
- if( ret_value < 0 )
- {
- throw AttributeIException("Attribute::close", "H5Aclose failed");
- }
- // reset the id because the attribute that it represents is now closed
- id = 0;
+ if (p_valid_id(id))
+ {
+ herr_t ret_value = H5Aclose(id);
+ if( ret_value < 0 )
+ {
+ throw AttributeIException("Attribute::close", "H5Aclose failed");
+ }
+ // reset the id because the attribute that it represents is now closed
+ id = 0;
+ }
}
//--------------------------------------------------------------------------
@@ -304,13 +307,12 @@ hsize_t Attribute::getStorageSize() const
//--------------------------------------------------------------------------
Attribute::~Attribute()
{
- // The attribute id will be closed properly
- try {
- decRefCount();
- }
- catch (Exception close_error) {
- cerr << "Attribute::~Attribute - " << close_error.getDetailMsg() << endl;
- }
+ try {
+ close();
+ }
+ catch (Exception close_error) {
+ cerr << "Attribute::~Attribute - " << close_error.getDetailMsg() << endl;
+ }
}
#ifndef H5_NO_NAMESPACE
diff --git a/c++/src/H5DataSet.cpp b/c++/src/H5DataSet.cpp
index 12da925..fe03008 100644
--- a/c++/src/H5DataSet.cpp
+++ b/c++/src/H5DataSet.cpp
@@ -46,7 +46,7 @@ namespace H5 {
///\brief Default constructor: creates a stub DataSet.
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
-DataSet::DataSet() : AbstractDs() {}
+DataSet::DataSet() : AbstractDs() {}
//--------------------------------------------------------------------------
// Function: DataSet overloaded constructor
@@ -521,13 +521,16 @@ DataSpace DataSet::getRegion(void *ref, H5R_type_t ref_type) const
//--------------------------------------------------------------------------
void DataSet::close()
{
- herr_t ret_value = H5Dclose( id );
- if( ret_value < 0 )
- {
- throw DataSetIException("DataSet::close", "H5Dclose failed");
- }
- // reset the id because the dataset that it represents is now closed
- id = 0;
+ if (p_valid_id(id))
+ {
+ herr_t ret_value = H5Dclose( id );
+ if( ret_value < 0 )
+ {
+ throw DataSetIException("DataSet::close", "H5Dclose failed");
+ }
+ // reset the id because the dataset that it represents is now closed
+ id = 0;
+ }
}
//--------------------------------------------------------------------------
@@ -540,12 +543,11 @@ void DataSet::close()
//--------------------------------------------------------------------------
DataSet::~DataSet()
{
- // The dataset id will be closed properly
try {
- decRefCount();
+ close();
}
catch (Exception close_error) {
- cerr << "DataSet::~DataSet - " << close_error.getDetailMsg() << endl;
+ cerr << "DataSet::~DataSet - " << close_error.getDetailMsg() << endl;
}
}
diff --git a/c++/src/H5DataSpace.cpp b/c++/src/H5DataSpace.cpp
index c7a098f..e786144 100644
--- a/c++/src/H5DataSpace.cpp
+++ b/c++/src/H5DataSpace.cpp
@@ -46,7 +46,7 @@ const DataSpace DataSpace::ALL( H5S_ALL );
///\exception H5::DataSpaceIException
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
-DataSpace::DataSpace( H5S_class_t type ) : IdComponent()
+DataSpace::DataSpace( H5S_class_t type ) : IdComponent(0)
{
id = H5Screate( type );
if( id < 0 )
@@ -64,7 +64,7 @@ DataSpace::DataSpace( H5S_class_t type ) : IdComponent()
///\exception H5::DataSpaceIException
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
-DataSpace::DataSpace( int rank, const hsize_t * dims, const hsize_t * maxdims) : IdComponent()
+DataSpace::DataSpace( int rank, const hsize_t * dims, const hsize_t * maxdims) : IdComponent(0)
{
id = H5Screate_simple( rank, dims, maxdims );
if( id < 0 )
@@ -103,16 +103,15 @@ DataSpace::DataSpace( const DataSpace& original ) : IdComponent( original ) {}
//--------------------------------------------------------------------------
void DataSpace::copy( const DataSpace& like_space )
{
- // If this object has a valid id, appropriately decrement reference
- // counter and close the id.
+ // If this object has an hdf5 valid id, close it
if( id != H5S_ALL ) {
try {
- decRefCount();
+ close();
}
catch (Exception close_error) {
throw DataSpaceIException("DataSpace::copy", close_error.getDetailMsg());
}
- } // if
+ } // end if
// call C routine to copy the dataspace
id = H5Scopy( like_space.getId() );
@@ -134,8 +133,11 @@ void DataSpace::copy( const DataSpace& like_space )
//--------------------------------------------------------------------------
DataSpace& DataSpace::operator=( const DataSpace& rhs )
{
- copy(rhs);
- return(*this);
+ if (this != &rhs)
+ {
+ copy(rhs);
+ return(*this);
+ }
}
//--------------------------------------------------------------------------
@@ -553,18 +555,17 @@ void DataSpace::selectHyperslab( H5S_seloper_t op, const hsize_t *count, const h
//--------------------------------------------------------------------------
void DataSpace::close()
{
- if( id != H5S_ALL ) // not a constant, should call H5Sclose
- {
- herr_t ret_value = H5Sclose(id);
- if( ret_value < 0 )
- {
- throw DataSpaceIException("DataSpace::close", "H5Sclose failed");
- }
- // reset the id because the dataspace that it represents is now closed
- id = 0;
- }
- else // cannot close a constant
- throw DataSpaceIException("DataSpace::close", "Cannot close a constant");
+ // check if id is a valid hdf5 object id before trying to close it
+ if (p_valid_id(id))
+ {
+ herr_t ret_value = H5Sclose(id);
+ if( ret_value < 0 )
+ {
+ throw DataSpaceIException("DataSpace::close", "H5Sclose failed");
+ }
+ // reset the id because the dataspace that it represents is now closed
+ id = 0;
+ }
}
//--------------------------------------------------------------------------
@@ -577,16 +578,12 @@ void DataSpace::close()
//--------------------------------------------------------------------------
DataSpace::~DataSpace()
{
- // If this object has a valid id, appropriately decrement reference
- // counter and close the id.
- if( id != H5S_ALL ) {
- try {
- decRefCount();
- }
- catch (Exception close_error) {
- cerr << "DataSpace::~DataSpace - " << close_error.getDetailMsg() << endl;
- }
- } // if
+ try {
+ close();
+ }
+ catch (Exception close_error) {
+ cerr << "DataSpace::~DataSpace - " << close_error.getDetailMsg() << endl;
+ }
}
#ifndef H5_NO_NAMESPACE
diff --git a/c++/src/H5DataType.cpp b/c++/src/H5DataType.cpp
index 802714e..815faca 100644
--- a/c++/src/H5DataType.cpp
+++ b/c++/src/H5DataType.cpp
@@ -101,18 +101,17 @@ DataType::DataType(const DataType& original) : H5Object(original) {}
//--------------------------------------------------------------------------
void DataType::copy( const DataType& like_type )
{
- // reset the identifier of this instance, H5Tclose will be called
- // if needed
+ // If this object is representing an hdf5 object, close it before
+ // copying like_type to it
try {
- decRefCount();
+ close();
}
catch (Exception close_error) {
- throw DataTypeIException(inMemFunc("copy"), close_error.getDetailMsg());
+ throw FileIException("DataType::copy", close_error.getDetailMsg());
}
// call C routine to copy the datatype
id = H5Tcopy( like_type.getId() );
-
if( id < 0 )
throw DataTypeIException(inMemFunc("copy"), "H5Tcopy failed");
}
@@ -130,8 +129,11 @@ void DataType::copy( const DataType& like_type )
//--------------------------------------------------------------------------
DataType& DataType::operator=( const DataType& rhs )
{
- copy(rhs);
- return(*this);
+ if (this != &rhs)
+ {
+ copy(rhs);
+ return(*this);
+ }
}
//--------------------------------------------------------------------------
@@ -636,13 +638,16 @@ DataSpace DataType::getRegion(void *ref, H5R_type_t ref_type) const
//--------------------------------------------------------------------------
void DataType::close()
{
- herr_t ret_value = H5Tclose(id);
- if( ret_value < 0 )
+ if (p_valid_id(id))
{
- throw DataTypeIException(inMemFunc("close"), "H5Tclose failed");
+ herr_t ret_value = H5Tclose(id);
+ if( ret_value < 0 )
+ {
+ throw DataTypeIException(inMemFunc("close"), "H5Tclose failed");
+ }
+ // reset the id because the datatype that it represents is now closed
+ id = 0;
}
- // reset the id because the datatype that it represents is now closed
- id = 0;
}
//--------------------------------------------------------------------------
@@ -655,9 +660,8 @@ void DataType::close()
//--------------------------------------------------------------------------
DataType::~DataType()
{
- // The datatype id will be closed properly
try {
- decRefCount();
+ close();
}
catch (Exception close_error) {
cerr << inMemFunc("~DataType - ") << close_error.getDetailMsg() << endl;
diff --git a/c++/src/H5File.cpp b/c++/src/H5File.cpp
index 9550eea..79f2c61 100644
--- a/c++/src/H5File.cpp
+++ b/c++/src/H5File.cpp
@@ -49,7 +49,7 @@ namespace H5 {
///\brief Default constructor: creates a stub H5File object.
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
-H5File::H5File() : IdComponent() {}
+H5File::H5File() : IdComponent(0) {}
//--------------------------------------------------------------------------
// Function: H5File overloaded constructor
@@ -78,7 +78,7 @@ H5File::H5File() : IdComponent() {}
/// http://hdf.ncsa.uiuc.edu/HDF5/doc/RM_H5F.html#File-Create
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
-H5File::H5File( const char* name, unsigned int flags, const FileCreatPropList& create_plist, const FileAccPropList& access_plist ) : IdComponent()
+H5File::H5File( const char* name, unsigned int flags, const FileCreatPropList& create_plist, const FileAccPropList& access_plist ) : IdComponent(0)
{
p_get_file(name, flags, create_plist, access_plist);
}
@@ -96,7 +96,7 @@ H5File::H5File( const char* name, unsigned int flags, const FileCreatPropList& c
/// FileCreatPropList::DEFAULT
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
-H5File::H5File( const H5std_string& name, unsigned int flags, const FileCreatPropList& create_plist, const FileAccPropList& access_plist ) : IdComponent()
+H5File::H5File( const H5std_string& name, unsigned int flags, const FileCreatPropList& create_plist, const FileAccPropList& access_plist ) : IdComponent(0)
{
p_get_file(name.c_str(), flags, create_plist, access_plist);
}
@@ -258,7 +258,7 @@ void H5File::reOpen()
// If this object has a valid id, appropriately decrement reference
// counter and close the id.
try {
- decRefCount();
+ close();
}
catch (Exception close_error) {
throw FileIException("H5File::reOpen", close_error.getDetailMsg());
@@ -649,13 +649,16 @@ hid_t H5File::getLocId() const
//--------------------------------------------------------------------------
void H5File::close()
{
- herr_t ret_value = H5Fclose( id );
- if( ret_value < 0 )
- {
- throw FileIException("H5File::close", "H5Fclose failed");
- }
- // reset the id because the file that it represents is now closed
- id = 0;
+ if (p_valid_id(id))
+ {
+ herr_t ret_value = H5Fclose( id );
+ if( ret_value < 0 )
+ {
+ throw FileIException("H5File::close", "H5Fclose failed");
+ }
+ // reset the id because the file that it represents is now closed
+ id = 0;
+ }
}
//--------------------------------------------------------------------------
@@ -689,12 +692,11 @@ void H5File::throwException(const H5std_string func_name, const H5std_string msg
//--------------------------------------------------------------------------
H5File::~H5File()
{
- // The HDF5 file id will be closed properly
try {
- decRefCount();
+ close();
}
catch (Exception close_error) {
- cerr << "H5File::~H5File - " << close_error.getDetailMsg() << endl;
+ cerr << "H5File::~H5File - " << close_error.getDetailMsg() << endl;
}
}
diff --git a/c++/src/H5Group.cpp b/c++/src/H5Group.cpp
index 6c0239f..8725b54 100644
--- a/c++/src/H5Group.cpp
+++ b/c++/src/H5Group.cpp
@@ -187,13 +187,16 @@ DataSpace Group::getRegion(void *ref, H5R_type_t ref_type) const
//--------------------------------------------------------------------------
void Group::close()
{
- herr_t ret_value = H5Gclose( id );
- if( ret_value < 0 )
- {
- throw GroupIException("Group::close", "H5Gclose failed");
- }
- // reset the id because the group that it represents is now closed
- id = 0;
+ if (p_valid_id(id))
+ {
+ herr_t ret_value = H5Gclose( id );
+ if( ret_value < 0 )
+ {
+ throw GroupIException("Group::close", "H5Gclose failed");
+ }
+ // reset the id because the group that it represents is now closed
+ id = 0;
+ }
}
//--------------------------------------------------------------------------
@@ -227,14 +230,12 @@ void Group::throwException(const H5std_string func_name, const H5std_string msg)
//--------------------------------------------------------------------------
Group::~Group()
{
- // The group id will be closed properly
try {
- decRefCount();
+ close();
}
catch (Exception close_error) {
- cerr << "Group::~Group - " << close_error.getDetailMsg() << endl;
+ cerr << "Group::~Group - " << close_error.getDetailMsg() << endl;
}
-
}
#ifndef H5_NO_NAMESPACE
diff --git a/c++/src/H5IdComponent.cpp b/c++/src/H5IdComponent.cpp
index d0c60a4..5f56324 100644
--- a/c++/src/H5IdComponent.cpp
+++ b/c++/src/H5IdComponent.cpp
@@ -43,8 +43,8 @@ IdComponent::IdComponent(const hid_t h5_id) : id(h5_id) {}
//--------------------------------------------------------------------------
IdComponent::IdComponent( const IdComponent& original )
{
- id = original.id;
- incRefCount(); // increment number of references to this id
+ id = original.id;
+ incRefCount(); // increment number of references to this id
}
//--------------------------------------------------------------------------
@@ -80,6 +80,7 @@ void IdComponent::incRefCount() const
void IdComponent::decRefCount(const hid_t obj_id) const
{
if (p_valid_id(obj_id))
+ {
if (H5Idec_ref(obj_id) < 0)
if (H5Iget_ref(obj_id) <= 0)
throw IdComponentException(inMemFunc("decRefCount"),
@@ -87,6 +88,7 @@ void IdComponent::decRefCount(const hid_t obj_id) const
else
throw IdComponentException(inMemFunc("decRefCount"),
"decrementing object ref count failed");
+ }
}
//--------------------------------------------------------------------------
@@ -112,7 +114,7 @@ int IdComponent::getCounter(const hid_t obj_id) const
{
counter = H5Iget_ref(obj_id);
if (counter < 0)
- throw IdComponentException(inMemFunc("incRefCount"), "incrementing object ref count failed");
+ throw IdComponentException(inMemFunc("incRefCount"), "getting object ref count failed - negative");
}
return (counter);
}
@@ -168,16 +170,23 @@ H5I_type_t IdComponent::getHDFObjType(const hid_t obj_id)
//--------------------------------------------------------------------------
IdComponent& IdComponent::operator=( const IdComponent& rhs )
{
- // handling references to this id
- decRefCount();
-
- // copy the data members from the rhs object
- id = rhs.id;
-
- // increment the reference counter
- incRefCount();
-
- return( *this );
+ if (this != &rhs)
+ {
+ // handling references to this id
+ try {
+ close();
+ }
+ catch (Exception close_error) {
+ throw FileIException(inMemFunc("operator="), close_error.getDetailMsg());
+ }
+
+ // copy the data members from the rhs object
+ id = rhs.id;
+
+ // increment the reference counter
+ incRefCount();
+ }
+ return *this;
}
//--------------------------------------------------------------------------
@@ -194,11 +203,19 @@ IdComponent& IdComponent::operator=( const IdComponent& rhs )
//--------------------------------------------------------------------------
void IdComponent::setId(const hid_t new_id)
{
- // handling references to this id
- decRefCount();
+ // handling references to this old id
+ try {
+ close();
+ }
+ catch (Exception close_error) {
+ throw IdComponentException(inMemFunc("copy"), close_error.getDetailMsg());
+ }
// reset object's id to the given id
id = new_id;
+
+ // increment the reference counter of the new id
+ incRefCount();
}
//--------------------------------------------------------------------------
@@ -209,7 +226,7 @@ void IdComponent::setId(const hid_t new_id)
//--------------------------------------------------------------------------
hid_t IdComponent::getId () const
{
- return( id );
+ return(id);
}
//--------------------------------------------------------------------------
@@ -217,31 +234,7 @@ hid_t IdComponent::getId () const
///\brief Noop destructor.
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
-IdComponent::~IdComponent() {
-
-/* uncomment this block and complete it when deciding to use dontAtExit
- unless the atexit/global destructor problem is fixed, then
- remove it- BMR 11/14/00
-
- if( id == NOTATEXIT )
- {
- // Call H5Library::close to clean up - temporary solution to avoid the
- // trouble of atexit/global destructors
- try {
- if( H5Library::need_cleanup == true )
- {
- H5Library::close();
- H5Library::need_cleanup = false; // reset the boolean just in case
- }
- }
- // catch failure caused by the H5Library operations
- catch( LibraryIException error )
- {
- error.printError();
- }
- }
-*/
-}
+IdComponent::~IdComponent() {}
//
// Implementation of protected functions for HDF5 Reference Interface.
diff --git a/c++/src/H5Object.cpp b/c++/src/H5Object.cpp
index 40bed19..84b4efb 100644
--- a/c++/src/H5Object.cpp
+++ b/c++/src/H5Object.cpp
@@ -53,7 +53,7 @@ extern "C" herr_t userAttrOpWrpr( hid_t loc_id, const char* attr_name, void* op_
// set it to a valid HDF5 id.
// Programmer Binh-Minh Ribler - 2000
//--------------------------------------------------------------------------
-H5Object::H5Object() : IdComponent() {}
+H5Object::H5Object() : IdComponent(0) {}
//--------------------------------------------------------------------------
// Function: H5Object overloaded constructor (protected)
diff --git a/c++/src/H5PredType.cpp b/c++/src/H5PredType.cpp
index 6f1e5df..510c659 100644
--- a/c++/src/H5PredType.cpp
+++ b/c++/src/H5PredType.cpp
@@ -237,8 +237,11 @@ const PredType PredType::NATIVE_UINT_LEAST64( H5T_NATIVE_UINT_LEAST64 );
//--------------------------------------------------------------------------
PredType& PredType::operator=( const PredType& rhs )
{
- copy(rhs);
- return(*this);
+ if (this != &rhs)
+ {
+ copy(rhs);
+ return(*this);
+ }
}
#ifndef DOXYGEN_SHOULD_SKIP_THIS
diff --git a/c++/src/H5PropList.cpp b/c++/src/H5PropList.cpp
index f4981c3..3457a9d 100644
--- a/c++/src/H5PropList.cpp
+++ b/c++/src/H5PropList.cpp
@@ -97,20 +97,19 @@ PropList::PropList( const hid_t plist_id ) : IdComponent(0)
//--------------------------------------------------------------------------
void PropList::copy( const PropList& like_plist )
{
- // If this object has a valid id, appropriately decrement reference
- // counter and close the id.
+ // If this object is representing an hdf5 object, close it before
+ // copying like_plist to it
try {
- decRefCount();
+ close();
}
catch (Exception close_error) {
- throw PropListIException(inMemFunc("copy"), close_error.getDetailMsg());
+ throw FileIException("PropList::copy", close_error.getDetailMsg());
}
- // call C routine to copy the property list
- id = H5Pcopy( like_plist.getId() );
-
- if( id < 0 )
- throw PropListIException(inMemFunc("copy"), "H5Pcopy failed");
+ // call C routine to copy the property list
+ id = H5Pcopy( like_plist.getId() );
+ if( id < 0 )
+ throw PropListIException(inMemFunc("copy"), "H5Pcopy failed");
}
//--------------------------------------------------------------------------
@@ -126,8 +125,11 @@ void PropList::copy( const PropList& like_plist )
//--------------------------------------------------------------------------
PropList& PropList::operator=( const PropList& rhs )
{
- copy(rhs);
- return(*this);
+ if (this != &rhs)
+ {
+ copy(rhs);
+ return(*this);
+ }
}
//--------------------------------------------------------------------------
@@ -208,18 +210,16 @@ void PropList::copyProp( PropList& dest, PropList& src, const H5std_string& name
//--------------------------------------------------------------------------
void PropList::close()
{
- if( id != H5P_NO_CLASS ) // not a constant, should call H5Pclose
- {
- herr_t ret_value = H5Pclose( id );
- if( ret_value < 0 )
- {
- throw PropListIException(inMemFunc("close"), "H5Pclose failed");
- }
- // reset the id because the property list that it represents is now closed
- id = 0;
- }
- else
- throw PropListIException(inMemFunc("close"), "Cannot close a constant");
+ if (p_valid_id(id))
+ {
+ herr_t ret_value = H5Pclose( id );
+ if( ret_value < 0 )
+ {
+ throw PropListIException(inMemFunc("close"), "H5Pclose failed");
+ }
+ // reset the id because the property list that it represents is now closed
+ id = 0;
+ }
}
//--------------------------------------------------------------------------
@@ -626,9 +626,8 @@ PropList PropList::getClassParent() const
//--------------------------------------------------------------------------
PropList::~PropList()
{
- // The property list id will be closed properly
try {
- decRefCount();
+ close();
}
catch (Exception close_error) {
cerr << "PropList::~PropList - " << close_error.getDetailMsg() << endl;
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