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diff --git a/config/commence.am b/config/commence.am
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+#------------------------------------------------------------ -*- makefile -*-
+# The following section of this makefile comes from the
+# `./config/commence' file which was generated with config.status
+# from `./config/commence.in'.
+#-----------------------------------------------------------------------------
+
+# Shell commands used in Makefiles
+RM=rm -f
+CP=cp
+
+# Libraries to link to while building
+LIBHDF5=$(top_builddir)/src/libhdf5.la
+LIBH5TEST=$(top_builddir)/test/libh5test.la
+LIBH5F=$(top_builddir)/fortran/src/libhdf5_fortran.la
+LIBH5FTEST=$(top_builddir)/fortran/test/libh5test_fortran.la
+LIBH5CPP=$(top_builddir)/c++/src/libhdf5_cpp.la
+LIBH5TOOLS=$(top_builddir)/tools/lib/libh5tools.la
+LIBH5_HL=$(top_builddir)/hl/src/libhdf5_hl.la
+LIBH5F_HL=$(top_builddir)/hl/fortran/src/libhdf5hl_fortran.la
+
+# Install directories that automake doesn't know about
+includedir = $(exec_prefix)/include
+docdir = $(exec_prefix)/doc
+
+# Scripts used to build examples
+H5CC=$(bindir)/h5cc
+H5CC_PP=$(bindir)/h5pcc
+H5FC=$(bindir)/h5fc
+H5FC_PP=$(bindir)/h5pfc
+
+# Make sure that these variables are exported to the Makefiles
+F9XMODEXT=@F9XMODEXT@
+
+# Let automake worry about Makefiles and configure components being up-to-
+# date.
+#
+#
+# The following rules insure that the Makefile is up-to-date by rerunning
+# various autoconf components (although not all versions of make assume
+# that the makefile is implicitly a target).  We use time stamp files to
+# keep track of the most recent update of H5config.h.in and H5config.h
+# because autoheader and config.status don't update the modification time
+# if the contents don't change.
+# Invoke it by "gmake reconfigure".
+#
+# Graphically, the dependencies are:
+#
+#                       configure.in
+#                           |  |
+#         +-----------------+  +------------+
+#         |                                 |
+#      stamp1                           configure
+#   (H5config.h.in)                         |
+#       |  |                                |
+#       |  +---------------+    +-----------+
+#       |                  |    |
+#       |               config.status
+#       |                     |
+#       |  +------------------+
+#       |  |
+#      stamp2
+#    (H5config.h)                   Makefile.in et al
+#         |                                 |
+#         +------------------+  +-----------+
+#                            |  |
+#                          Makefile
+#
+# A side effect of updating stamp1 is to generate H5config.h.in and a
+# side effect of updating stamp2 is to generate H5config.h.  When using
+# a version of make that doesn't treat the makefile as the initial target
+# the user may want to occassionally type `make Makefile' in any source
+# directory.
+# The `Makefile' target has been renamed to `reconfigure' so that the
+# autoconf and make depend processes do not start up automatically.
+# One must do `make reconfigure' explicitedly to start the process.
+# (When srcdir is used and if more than one machines are running,
+# this automatic Makefile/autoconf can get things unstable.)
+#
+#STAMP1=$(top_builddir)/config/stamp1
+#STAMP2=$(top_builddir)/config/stamp2
+
+#MAKEFILE_PARTS=$(srcdir)/Makefile.in            \
+#               $(top_srcdir)/config/commence.am \
+#               $(top_srcdir)/config/conclude.am
+
+#$(STAMP1): $(top_srcdir)/configure.in
+#	touch $(STAMP1)
+#	-cd $(top_srcdir); autoheader
+
+#$(STAMP2): $(STAMP1) $(top_builddir)/config.status
+#	touch $(STAMP2)
+#	-cd $(top_builddir); \
+#	   CONFIG_FILES= CONFIG_HEADERS=src/H5config.h ./config.status
+
+# Automake supplies a rule to generate configure
+##$(top_srcdir)/configure: $(top_srcdir)/configure.in
+##	-cd $(top_srcdir); autoconf
+
+#$(top_builddir)/config.status: $(top_srcdir)/configure $(STAMP1)
+#	-cd $(top_builddir); ./config.status --recheck
+
+# rerun the autoconf process if any configure components have changed. 
+#reconfigure: $(MAKEFILE_PARTS) $(STAMP2)
+#	-cd $(top_builddir); CONFIG_HEADERS= ./config.status
+#	@for sub in @subdirs@ dummy; do                                 \
+#	  if test $$sub != dummy; then                                  \
+#	    -cd $$sub; $(MAKE) reconfigure;                             \
+#	  fi;                                                           \
+#	done;
+
+#-----------------------------------------------------------------------------
+# The following section of this makefile comes from the middle of
+# `Makefile.am' from this directory.
+# It was generated by running automake on `Makefile.am' to create
+# `Makefile.in', then running `config.status' to create this Makefile.
+#-----------------------------------------------------------------------------