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-rw-r--r--config/cmake/ConfigureChecks.cmake38
-rw-r--r--config/cmake/FindHDFS.cmake70
-rw-r--r--config/cmake/H5pubconf.h.in31
-rw-r--r--config/cmake/HDFCompilerFlags.cmake84
-rw-r--r--config/cmake/libhdf5.settings.cmake.in36
-rwxr-xr-xconfig/cmake/scripts/CTestScript.cmake20
-rwxr-xr-xconfig/cmake/scripts/HDF5config.cmake101
-rw-r--r--config/cmake/scripts/HPC/bsub-HDF5options.cmake31
-rw-r--r--config/cmake/scripts/HPC/qsub-HDF5options.cmake42
-rw-r--r--config/cmake/scripts/HPC/raybsub-HDF5options.cmake32
-rw-r--r--config/cmake/scripts/HPC/sbatch-HDF5options.cmake43
-rw-r--r--config/cmake/wait_H5Tinit.cmake11
-rw-r--r--config/cmake_ext_mod/runTest.cmake9
-rw-r--r--config/toolchain/build32.cmake36
-rw-r--r--config/toolchain/crayle.cmake10
15 files changed, 522 insertions, 72 deletions
diff --git a/config/cmake/ConfigureChecks.cmake b/config/cmake/ConfigureChecks.cmake
index 3c23375..938042a 100644
--- a/config/cmake/ConfigureChecks.cmake
+++ b/config/cmake/ConfigureChecks.cmake
@@ -47,7 +47,7 @@ MARK_AS_ADVANCED (HDF5_METADATA_TRACE_FILE)
# conversions. If not, some hard conversions will still be prefered even
# though the data may be wrong (for example, some compilers don't
# support denormalized floating values) to maximize speed.
-#
+#-----------------------------------------------------------------------------
option (HDF5_WANT_DATA_ACCURACY "IF data accuracy is guaranteed during data conversions" ON)
if (HDF5_WANT_DATA_ACCURACY)
set (${HDF_PREFIX}_WANT_DATA_ACCURACY 1)
@@ -59,7 +59,7 @@ MARK_AS_ADVANCED (HDF5_WANT_DATA_ACCURACY)
# checked and data conversion exceptions are returned. This is mainly
# for the speed optimization of hard conversions. Soft conversions can
# actually benefit little.
-#
+#-----------------------------------------------------------------------------
option (HDF5_WANT_DCONV_EXCEPTION "exception handling functions is checked during data conversions" ON)
if (HDF5_WANT_DCONV_EXCEPTION)
set (${HDF_PREFIX}_WANT_DCONV_EXCEPTION 1)
@@ -68,7 +68,7 @@ MARK_AS_ADVANCED (HDF5_WANT_DCONV_EXCEPTION)
# ----------------------------------------------------------------------
# Check if they would like the function stack support compiled in
-#
+#-----------------------------------------------------------------------------
option (HDF5_ENABLE_CODESTACK "Enable the function stack tracing (for developer debugging)." OFF)
if (HDF5_ENABLE_CODESTACK)
set (${HDF_PREFIX}_HAVE_CODESTACK 1)
@@ -89,7 +89,7 @@ set (${HDF_PREFIX}_HAVE_TMPFILE 1)
# TODO --------------------------------------------------------------------------
# Should the Default Virtual File Driver be compiled?
# This is hard-coded now but option should added to match configure
-#
+#-----------------------------------------------------------------------------
set (${HDF_PREFIX}_DEFAULT_VFD H5FD_SEC2)
if (NOT DEFINED "${HDF_PREFIX}_DEFAULT_PLUGINDIR")
@@ -106,6 +106,7 @@ if (WINDOWS)
# Set the flag to indicate that the machine has window style pathname,
# that is, "drive-letter:\" (e.g. "C:") or "drive-letter:/" (e.g. "C:/").
# (This flag should be _unset_ for all machines, except for Windows)
+ #-----------------------------------------------------------------------
set (${HDF_PREFIX}_HAVE_WINDOW_PATH 1)
endif ()
@@ -168,6 +169,25 @@ if (NOT WINDOWS)
endif ()
endif ()
+#-----------------------------------------------------------------------------
+# Check if ROS3 driver can be built
+#-----------------------------------------------------------------------------
+option (HDF5_ENABLE_ROS3_VFD "Build the ROS3 Virtual File Driver" OFF)
+ if (HDF5_ENABLE_ROS3_VFD)
+ # CMake version 3.13 fixed FindCURL module
+ if(CMAKE_VERSION VERSION_LESS "3.13.0" AND WIN32)
+ MESSAGE(FATAL_ERROR "Windows builds for this option requires a minimum of CMake 3.13")
+ endif ()
+ find_package(CURL REQUIRED)
+ find_package(OpenSSL REQUIRED)
+ if (${CURL_FOUND} AND ${OPENSSL_FOUND})
+ set (${HDF_PREFIX}_HAVE_ROS3_VFD 1)
+ list (APPEND LINK_LIBS ${CURL_LIBRARIES} ${OPENSSL_LIBRARIES})
+ INCLUDE_DIRECTORIES (${CURL_INCLUDE_DIRS} ${OPENSSL_INCLUDE_DIR})
+ else ()
+ message (STATUS "The Read-Only S3 VFD was requested but cannot be built.\nPlease check that openssl and cURL are available on your\nsystem, and/or re-configure without option HDF5_ENABLE_ROS3_VFD.")
+ endif ()
+endif ()
#-----------------------------------------------------------------------------
# Macro to determine the various conversion capabilities
@@ -215,7 +235,7 @@ endmacro ()
# is 0x004733ce17af227f, not the same as the library's conversion to 0x004733ce17af2282.
# The machine's conversion gets the correct value. We define the macro and disable
# this kind of test until we figure out what algorithm they use.
-#
+#-----------------------------------------------------------------------------
H5ConversionTests (${HDF_PREFIX}_LDOUBLE_TO_LONG_SPECIAL "Checking IF your system converts long double to (unsigned) long values with special algorithm")
# ----------------------------------------------------------------------
# Set the flag to indicate that the machine is using a special algorithm
@@ -224,7 +244,7 @@ H5ConversionTests (${HDF_PREFIX}_LDOUBLE_TO_LONG_SPECIAL "Checking IF your syst
# when the bit sequences are 003fff..., 007fff..., 00ffff..., 01ffff...,
# ..., 7fffff..., the compiler uses a unknown algorithm. We define a
# macro and skip the test for now until we know about the algorithm.
-#
+#-----------------------------------------------------------------------------
H5ConversionTests (${HDF_PREFIX}_LONG_TO_LDOUBLE_SPECIAL "Checking IF your system can convert (unsigned) long to long double values with special algorithm")
# ----------------------------------------------------------------------
# Set the flag to indicate that the machine can accurately convert
@@ -234,7 +254,7 @@ H5ConversionTests (${HDF_PREFIX}_LONG_TO_LDOUBLE_SPECIAL "Checking IF your syste
# start to go wrong on these two machines. Adjusting it higher to
# 0x4351ccf385ebc8a0dfcc... or 0x4351ccf385ebc8a0ffcc... will make the converted
# values wildly wrong. This test detects this wrong behavior and disable the test.
-#
+#-----------------------------------------------------------------------------
H5ConversionTests (${HDF_PREFIX}_LDOUBLE_TO_LLONG_ACCURATE "Checking IF correctly converting long double to (unsigned) long long values")
# ----------------------------------------------------------------------
# Set the flag to indicate that the machine can accurately convert
@@ -242,9 +262,9 @@ H5ConversionTests (${HDF_PREFIX}_LDOUBLE_TO_LLONG_ACCURATE "Checking IF correctl
# all machines, except for Mac OS 10.4, when the bit sequences are 003fff...,
# 007fff..., 00ffff..., 01ffff..., ..., 7fffff..., the converted values are twice
# as big as they should be.
-#
+#-----------------------------------------------------------------------------
H5ConversionTests (${HDF_PREFIX}_LLONG_TO_LDOUBLE_CORRECT "Checking IF correctly converting (unsigned) long long to long double values")
# ----------------------------------------------------------------------
# Check if pointer alignments are enforced
-#
+#-----------------------------------------------------------------------------
H5ConversionTests (${HDF_PREFIX}_NO_ALIGNMENT_RESTRICTIONS "Checking IF alignment restrictions are strictly enforced")
diff --git a/config/cmake/FindHDFS.cmake b/config/cmake/FindHDFS.cmake
new file mode 100644
index 0000000..e401a94
--- /dev/null
+++ b/config/cmake/FindHDFS.cmake
@@ -0,0 +1,70 @@
+
+# DerivedFrom: https://github.com/cloudera/Impala/blob/cdh5-trunk/cmake_modules/FindHDFS.cmake
+# - Find HDFS (hdfs.h and libhdfs.so)
+# This module defines
+# Hadoop_VERSION, version string of ant if found
+# HDFS_INCLUDE_DIR, directory containing hdfs.h
+# HDFS_LIBRARIES, location of libhdfs.so
+# HDFS_FOUND, whether HDFS is found.
+
+exec_program($ENV{HADOOP_HOME}/bin/hadoop ARGS version OUTPUT_VARIABLE Hadoop_VERSION
+ RETURN_VALUE Hadoop_RETURN)
+
+# currently only looking in HADOOP_HOME
+find_path(HDFS_INCLUDE_DIR hdfs.h PATHS
+ $ENV{HADOOP_HOME}/include/
+ # make sure we don't accidentally pick up a different version
+ NO_DEFAULT_PATH
+)
+
+if ("${CMAKE_SIZEOF_VOID_P}" STREQUAL "8")
+ set(arch_hint "x64")
+elseif ("$ENV{LIB}" MATCHES "(amd64|ia64)")
+ set(arch_hint "x64")
+else ()
+ set(arch_hint "x86")
+endif()
+
+message(STATUS "Architecture: ${arch_hint}")
+
+if ("${arch_hint}" STREQUAL "x64")
+ set(HDFS_LIB_PATHS $ENV{HADOOP_HOME}/lib/native)
+else ()
+ set(HDFS_LIB_PATHS $ENV{HADOOP_HOME}/lib/native)
+endif ()
+
+message(STATUS "HDFS_LIB_PATHS: ${HDFS_LIB_PATHS}")
+
+find_library(HDFS_LIB NAMES hdfs PATHS
+ ${HDFS_LIB_PATHS}
+ # make sure we don't accidentally pick up a different version
+ NO_DEFAULT_PATH
+)
+
+if (HDFS_LIB)
+ set(HDFS_FOUND TRUE)
+ set(HDFS_LIBRARIES ${HDFS_LIB})
+ set(HDFS_STATIC_LIB ${HDFS_LIB_PATHS}/${CMAKE_STATIC_LIBRARY_PREFIX}hdfs${CMAKE_STATIC_LIBRARY_SUFFIX})
+
+ add_library(hdfs_static STATIC IMPORTED)
+ set_target_properties(hdfs_static PROPERTIES IMPORTED_LOCATION ${HDFS_STATIC_LIB})
+else ()
+ set(HDFS_FOUND FALSE)
+endif ()
+
+if (HDFS_FOUND)
+ if (NOT HDFS_FIND_QUIETLY)
+ message(STATUS "${Hadoop_VERSION}")
+ message(STATUS "HDFS_INCLUDE_DIR: ${HDFS_INCLUDE_DIR}")
+ message(STATUS "HDFS_LIBRARIES: ${HDFS_LIBRARIES}")
+ message(STATUS "hdfs_static: ${HDFS_STATIC_LIB}")
+ endif ()
+else ()
+ message(FATAL_ERROR "HDFS includes and libraries NOT found."
+ "(${HDFS_INCLUDE_DIR}, ${HDFS_LIB})")
+endif ()
+
+mark_as_advanced(
+ HDFS_LIBRARIES
+ HDFS_INCLUDE_DIR
+)
diff --git a/config/cmake/H5pubconf.h.in b/config/cmake/H5pubconf.h.in
index 5906f34..15a16b4 100644
--- a/config/cmake/H5pubconf.h.in
+++ b/config/cmake/H5pubconf.h.in
@@ -78,6 +78,9 @@
/* Define if the function stack tracing code is to be compiled in */
#cmakedefine H5_HAVE_CODESTACK @H5_HAVE_CODESTACK@
+/* Define to 1 if you have the <curl/curl.h> header file. */
+#cmakedefine H5_HAVE_CURL_H @H5_HAVE_CURL_H@
+
/* Define if Darwin or Mac OS X */
#cmakedefine H5_HAVE_DARWIN @H5_HAVE_DARWIN@
@@ -156,6 +159,9 @@
/* Define to 1 if you have the `gettimeofday' function. */
#cmakedefine H5_HAVE_GETTIMEOFDAY @H5_HAVE_GETTIMEOFDAY@
+/* Define to 1 if you have the <hdfs.h> header file. */
+#cmakedefine H5_HAVE_HDFS_H @H5_HAVE_HDFS_H@
+
/* Define if the compiler understands inline */
#cmakedefine H5_HAVE_INLINE @H5_HAVE_INLINE@
@@ -172,12 +178,24 @@
/* Define to 1 if you have the <io.h> header file. */
#cmakedefine H5_HAVE_IO_H @H5_HAVE_IO_H@
+/* Define to 1 if you have the `crypto' library (-lcrypto). */
+#cmakedefine H5_HAVE_LIBCRYPTO @H5_HAVE_LIBCRYPTO@
+
+/* Define to 1 if you have the `curl' library (-lcurl). */
+#cmakedefine H5_HAVE_LIBCURL @H5_HAVE_LIBCURL@
+
/* Define to 1 if you have the `dl' library (-ldl). */
#cmakedefine H5_HAVE_LIBDL @H5_HAVE_LIBDL@
/* Define to 1 if you have the `dmalloc' library (-ldmalloc). */
#cmakedefine H5_HAVE_LIBDMALLOC @H5_HAVE_LIBDMALLOC@
+/* Proceed to build with libhdfs */
+#cmakedefine H5_HAVE_LIBHDFS @H5_HAVE_LIBHDFS@
+
+/* Define to 1 if you have the `jvm' library (-ljvm). */
+#cmakedefine H5_HAVE_LIBJVM @H5_HAVE_LIBJVM@
+
/* Define to 1 if you have the `m' library (-lm). */
#cmakedefine H5_HAVE_LIBM @H5_HAVE_LIBM@
@@ -235,6 +253,15 @@
/* Define if MPI_Info_c2f and MPI_Info_f2c exists */
#cmakedefine H5_HAVE_MPI_MULTI_LANG_Info @H5_HAVE_MPI_MULTI_LANG_Info@
+/* Define to 1 if you have the <openssl/evp.h> header file. */
+#cmakedefine H5_HAVE_OPENSSL_EVP_H @H5_HAVE_OPENSSL_EVP_H@
+
+/* Define to 1 if you have the <openssl/hmac.h> header file. */
+#cmakedefine H5_HAVE_OPENSSL_HMAC_H @H5_HAVE_OPENSSL_HMAC_H@
+
+/* Define to 1 if you have the <openssl/sha.h> header file. */
+#cmakedefine H5_HAVE_OPENSSL_SHA_H @H5_HAVE_OPENSSL_SHA_H@
+
/* Define if we have parallel support */
#cmakedefine H5_HAVE_PARALLEL @H5_HAVE_PARALLEL@
@@ -247,6 +274,10 @@
/* Define to 1 if you have the `rand_r' function. */
#cmakedefine H5_HAVE_RAND_R @H5_HAVE_RAND_R@
+/* Define whether the Read-Only S3 virtual file driver (VFD) should be
+ compiled */
+#cmakedefine H5_HAVE_ROS3_VFD @H5_HAVE_ROS3_VFD@
+
/* Define to 1 if you have the `round' function. */
#cmakedefine H5_HAVE_ROUND @H5_HAVE_ROUND@
diff --git a/config/cmake/HDFCompilerFlags.cmake b/config/cmake/HDFCompilerFlags.cmake
index 82d63af..adace89 100644
--- a/config/cmake/HDFCompilerFlags.cmake
+++ b/config/cmake/HDFCompilerFlags.cmake
@@ -143,7 +143,7 @@ if (NOT MSVC AND CMAKE_COMPILER_IS_GNUCC)
#
# Technically, variable-length arrays are part of the C99 standard, but
# we should approach them a bit cautiously... -QAK
- set (H5_CFLAGS1 "${H5_CFLAGS1} -Wlogical-op -Wlarger-than=2048 -Wvla")
+ set (H5_CFLAGS1 "${H5_CFLAGS1} -Wlogical-op -Wlarger-than=2560 -Wvla")
# Append more extra warning flags that only gcc 4.4+ know about
set (H5_CFLAGS1 "${H5_CFLAGS1} -Wsync-nand -Wframe-larger-than=16384 -Wpacked-bitfield-compat")
@@ -210,9 +210,10 @@ if (NOT MSVC AND CMAKE_COMPILER_IS_GNUCC)
# Append more extra warning flags that only gcc 9.x+ know about
if (CMAKE_C_COMPILER_ID STREQUAL "GNU" AND NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 9.0)
- set (H5_CFLAGS4 "${H5_CFLAGS4} Wattribute-alias=2 -Wmissing-profile")
+ set (H5_CFLAGS4 "${H5_CFLAGS4} -Wattribute-alias=2 -Wmissing-profile")
endif ()
-
+elseif (CMAKE_C_COMPILER_ID STREQUAL "PGI")
+ set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -Minform=inform")
endif ()
#-----------------------------------------------------------------------------
@@ -339,3 +340,80 @@ endif ()
if (CMAKE_COMPILER_IS_GNUCXX AND CMAKE_CXX_COMPILER_LOADED)
set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fmessage-length=0")
endif ()
+
+#-----------------------------------------------------------------------------
+# Option for --enable-asserts
+# By default, CMake adds NDEBUG to CMAKE_${lang}_FLAGS for Release build types
+# This option will force/override the default setting for all configurations
+#-----------------------------------------------------------------------------
+#option (HDF5_ENABLE_ASSERTS "Determines whether NDEBUG is defined to control assertions." OFF)
+set (HDF5_ENABLE_ASSERTS "OFF" CACHE STRING "Determines whether NDEBUG is defined to control assertions (OFF NO YES)")
+set_property (CACHE HDF5_ENABLE_ASSERTS PROPERTY STRINGS OFF NO YES)
+if (HDF5_ENABLE_ASSERTS MATCHES "YES")
+ add_compile_options ("-UNDEBUG")
+elseif (HDF5_ENABLE_ASSERTS MATCHES "NO")
+ add_compile_options ("-DNDEBUG")
+endif ()
+MARK_AS_ADVANCED (HDF5_ENABLE_ASSERTS)
+
+#-----------------------------------------------------------------------------
+# Option for --enable-symbols
+# This option will force/override the default setting for all configurations
+#-----------------------------------------------------------------------------
+#option (HDF5_ENABLE_SYMBOLS "Add debug symbols to the library independent of the build mode and optimization level." OFF)
+set (HDF5_ENABLE_SYMBOLS "OFF" CACHE STRING "Add debug symbols to the library independent of the build mode and optimization level (OFF NO YES)")
+set_property (CACHE HDF5_ENABLE_SYMBOLS PROPERTY STRINGS OFF NO YES)
+if (HDF5_ENABLE_SYMBOLS MATCHES "YES")
+ if (CMAKE_C_COMPILER_ID STREQUAL "Intel")
+ set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -g")
+ elseif (CMAKE_C_COMPILER_ID STREQUAL "GNU")
+ set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -g -fno-omit-frame-pointer")
+ endif ()
+ if(CMAKE_CXX_COMPILER_LOADED)
+ if (CMAKE_CXX_COMPILER_ID STREQUAL "Intel")
+ set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -g")
+ elseif (CMAKE_CXX_COMPILER_ID STREQUAL "GNU")
+ set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -g")
+ endif ()
+ endif ()
+elseif (HDF5_ENABLE_SYMBOLS MATCHES "NO")
+ if (CMAKE_C_COMPILER_ID STREQUAL "Intel")
+ set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -Wl,-s")
+ elseif (CMAKE_C_COMPILER_ID STREQUAL "GNU")
+ set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -s")
+ endif ()
+ if(CMAKE_CXX_COMPILER_LOADED)
+ if (CMAKE_CXX_COMPILER_ID STREQUAL "Intel")
+ set (CMAKE_CXX_FLAGS "${CMAKE_C_FLAGS} -Wl,-s")
+ elseif (CMAKE_CXX_COMPILER_ID STREQUAL "GNU")
+ set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -s")
+ endif ()
+ endif ()
+endif ()
+MARK_AS_ADVANCED (HDF5_ENABLE_SYMBOLS)
+
+#-----------------------------------------------------------------------------
+# Option for --enable-profiling
+# This option will force/override the default setting for all configurations
+#-----------------------------------------------------------------------------
+option (HDF5_ENABLE_PROFILING "Enable profiling flags independently from the build mode." OFF)
+if (HDF5_ENABLE_PROFILING)
+ set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${PROFILE_CFLAGS}")
+ if(CMAKE_CXX_COMPILER_LOADED)
+ set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${PROFILE_CXXFLAGS}")
+ endif ()
+endif ()
+MARK_AS_ADVANCED (HDF5_ENABLE_PROFILING)
+
+#-----------------------------------------------------------------------------
+# Option for --enable-optimization
+# This option will force/override the default setting for all configurations
+#-----------------------------------------------------------------------------
+option (HDF5_ENABLE_OPTIMIZATION "Enable optimization flags/settings independently from the build mode" OFF)
+if (HDF5_ENABLE_OPTIMIZATION)
+ set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${OPTIMIZE_CFLAGS}")
+ if(CMAKE_CXX_COMPILER_LOADED)
+ set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OPTIMIZE_CXXFLAGS}")
+ endif ()
+endif ()
+MARK_AS_ADVANCED (HDF5_ENABLE_OPTIMIZATION)
diff --git a/config/cmake/libhdf5.settings.cmake.in b/config/cmake/libhdf5.settings.cmake.in
index c3efbdd..7bfadb1 100644
--- a/config/cmake/libhdf5.settings.cmake.in
+++ b/config/cmake/libhdf5.settings.cmake.in
@@ -10,32 +10,40 @@ General Information:
Host system: @CMAKE_HOST_SYSTEM@
Uname information: @CMAKE_SYSTEM_NAME@
Byte sex: @BYTESEX@
- Libraries: @BUILD_NAME_EXT@
Installation point: @CMAKE_INSTALL_PREFIX@
Compiling Options:
------------------
- Compilation Mode: @CMAKE_BUILD_TYPE@ @CMAKE_C_COMPILER_VERSION@
- C Compiler: @CMAKE_C_COMPILER@
- CFLAGS: @CMAKE_C_FLAGS@
- H5_CFLAGS: @H5_CFLAGS@
- AM_CFLAGS: @AM_CFLAGS@
- CPPFLAGS: @CPPFLAGS@
- H5_CPPFLAGS: @H5_CPPFLAGS@
- AM_CPPFLAGS: @AM_CPPFLAGS@
- Shared C Library: @H5_ENABLE_SHARED_LIB@
- Static C Library: @H5_ENABLE_STATIC_LIB@
+ Build Mode: @CMAKE_BUILD_TYPE@
+ Debugging Symbols: @HDF5_ENABLE_SYMBOLS@
+ Asserts: @HDF5_ENABLE_ASSERTS@
+ Profiling: @HDF5_ENABLE_PROFILING@
+ Optimization Level: @HDF5_ENABLE_OPTIMIZATION@
+
+Linking Options:
+----------------
+ Libraries: @BUILD_NAME_EXT@
Statically Linked Executables: @BUILD_STATIC_EXECS@
LDFLAGS: @CMAKE_SHARED_LINKER_FLAGS@
+ H5_LDFLAGS: @H5_LDFLAGS@
AM_LDFLAGS: @AM_LDFLAGS@
Extra libraries: @LINK_LIBS@
Archiver: @CMAKE_AR@
Ranlib: @CMAKE_RANLIB@
- Debugged Packages: @DEBUG_PKG@
- API Tracing: @HDF5_ENABLE_TRACE@
Languages:
----------
+ C: YES
+ C Compiler: @CMAKE_C_COMPILER@ @CMAKE_C_COMPILER_VERSION@
+ CPPFLAGS: @CPPFLAGS@
+ H5_CPPFLAGS: @H5_CPPFLAGS@
+ AM_CPPFLAGS: @AM_CPPFLAGS@
+ CFLAGS: @CMAKE_C_FLAGS@
+ H5_CFLAGS: @H5_CFLAGS@
+ AM_CFLAGS: @AM_CFLAGS@
+ Shared C Library: @H5_ENABLE_SHARED_LIB@
+ Static C Library: @H5_ENABLE_STATIC_LIB@
+
Fortran: @HDF5_BUILD_FORTRAN@
@BUILD_FORTRAN_CONDITIONAL_TRUE@ Fortran Compiler: @CMAKE_Fortran_COMPILER@ @CMAKE_Fortran_COMPILER_VERSION@
@BUILD_FORTRAN_CONDITIONAL_TRUE@ Fortran 2003 Compiler: @HDF5_ENABLE_F2003@
@@ -65,6 +73,8 @@ Features:
I/O filters (external): @EXTERNAL_FILTERS@
MPE: @H5_HAVE_LIBLMPE@
Direct VFD: @H5_HAVE_DIRECT@
+ (Read-Only) S3 VFD: @H5_HAVE_ROS3_VFD@
+ (Read-Only) HDFS VFD: @H5_HAVE_LIBHDFS@
dmalloc: @H5_HAVE_LIBDMALLOC@
Clear file buffers before write: @HDF5_Enable_Clear_File_Buffers@
Using memory checker: @HDF5_ENABLE_USING_MEMCHECKER@
diff --git a/config/cmake/scripts/CTestScript.cmake b/config/cmake/scripts/CTestScript.cmake
index 8ff52ec..dc3939e 100755
--- a/config/cmake/scripts/CTestScript.cmake
+++ b/config/cmake/scripts/CTestScript.cmake
@@ -277,7 +277,15 @@ message (STATUS "Dashboard script configuration:\n${vars}\n")
ctest_test (BUILD "${CTEST_BINARY_DIRECTORY}" APPEND ${ctest_test_args} RETURN_VALUE res)
else ()
file(STRINGS ${CTEST_BINARY_DIRECTORY}/Testing/TAG TAG_CONTENTS REGEX "^2([0-9]+)[-]([0-9]+)$")
- execute_process (COMMAND ${LOCAL_BATCH_SCRIPT_COMMAND} ${CTEST_BINARY_DIRECTORY}/${LOCAL_BATCH_SCRIPT_NAME})
+ if (LOCAL_BATCH_SCRIPT_COMMAND STREQUAL "raybsub")
+ execute_process (COMMAND ${CTEST_BINARY_DIRECTORY}/${LOCAL_BATCH_SCRIPT_COMMAND} ${LOCAL_BATCH_SCRIPT_ARGS} ${CTEST_BINARY_DIRECTORY}/${LOCAL_BATCH_SCRIPT_NAME})
+ else ()
+ if (LOCAL_BATCH_SCRIPT_COMMAND STREQUAL "qsub")
+ execute_process (COMMAND ${CTEST_BINARY_DIRECTORY}/${LOCAL_BATCH_SCRIPT_NAME} ctestS.out)
+ else ()
+ execute_process (COMMAND ${LOCAL_BATCH_SCRIPT_COMMAND} ${LOCAL_BATCH_SCRIPT_ARGS} ${CTEST_BINARY_DIRECTORY}/${LOCAL_BATCH_SCRIPT_NAME})
+ endif()
+ endif ()
message(STATUS "Check for existence of ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml")
execute_process(COMMAND ls ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml RESULT_VARIABLE result OUTPUT_QUIET ERROR_QUIET)
while(result)
@@ -292,7 +300,15 @@ message (STATUS "Dashboard script configuration:\n${vars}\n")
file (RENAME ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/SerialTest.xml)
file (RENAME ${CTEST_BINARY_DIRECTORY}/Testing/Temporary/LastTest_${TAG_CONTENTS}.log ${CTEST_BINARY_DIRECTORY}/Testing/Temporary/LastTest_${TAG_CONTENTS}_Serial.log)
unset(result CACHE)
- execute_process (COMMAND ${LOCAL_BATCH_SCRIPT_COMMAND} ${CTEST_BINARY_DIRECTORY}/${LOCAL_BATCH_SCRIPT_PARALLEL_NAME})
+ if (LOCAL_BATCH_SCRIPT_COMMAND STREQUAL "raybsub")
+ execute_process (COMMAND ${CTEST_BINARY_DIRECTORY}/${LOCAL_BATCH_SCRIPT_COMMAND} ${LOCAL_BATCH_SCRIPT_ARGS} ${CTEST_BINARY_DIRECTORY}/${LOCAL_BATCH_SCRIPT_PARALLEL_NAME})
+ else ()
+ if (LOCAL_BATCH_SCRIPT_COMMAND STREQUAL "qsub")
+ execute_process (COMMAND ${CTEST_BINARY_DIRECTORY}/${LOCAL_BATCH_SCRIPT_NAME} ctestP.out)
+ else ()
+ execute_process (COMMAND ${LOCAL_BATCH_SCRIPT_COMMAND} ${LOCAL_BATCH_SCRIPT_ARGS} ${CTEST_BINARY_DIRECTORY}/${LOCAL_BATCH_SCRIPT_PARALLEL_NAME})
+ endif ()
+ endif ()
message(STATUS "Check for existence of ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml")
execute_process(COMMAND ls ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml RESULT_VARIABLE result OUTPUT_QUIET ERROR_QUIET)
while(result)
diff --git a/config/cmake/scripts/HDF5config.cmake b/config/cmake/scripts/HDF5config.cmake
index 9d84ba6..185a86e 100755
--- a/config/cmake/scripts/HDF5config.cmake
+++ b/config/cmake/scripts/HDF5config.cmake
@@ -9,56 +9,62 @@
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
-#############################################################################################
-### ${CTEST_SCRIPT_ARG} is of the form OPTION=VALUE ###
+#############################################################################################
+### ${CTEST_SCRIPT_ARG} is of the form OPTION=VALUE ###
### BUILD_GENERATOR required [Unix, VS2017, VS201764, VS2015, VS201564, VS2013, VS201364] ###
-### ctest -S HDF518config.cmake,BUILD_GENERATOR=VS201764 -C Release -VV -O hdf518.log ###
-#############################################################################################
-
-cmake_minimum_required (VERSION 3.10)
-############################################################################
-# Usage:
-# ctest -S HDF518config.cmake,OPTION=VALUE -C Release -VV -O test.log
-# where valid options for OPTION are:
-# BUILD_GENERATOR - The cmake build generator:
-# Unix * Unix Makefiles
+### ctest -S HDF518config.cmake,BUILD_GENERATOR=VS201764 -C Release -VV -O hdf518.log ###
+#############################################################################################
+
+cmake_minimum_required (VERSION 3.10)
+############################################################################
+# Usage:
+# ctest -S HDF518config.cmake,OPTION=VALUE -C Release -VV -O test.log
+# where valid options for OPTION are:
+# BUILD_GENERATOR - The cmake build generator:
+# Unix * Unix Makefiles
# VS2017 * Visual Studio 15 2017
# VS201764 * Visual Studio 15 2017 Win64
-# VS2015 * Visual Studio 14 2015
-# VS201564 * Visual Studio 14 2015 Win64
-# VS2013 * Visual Studio 12 2013
-# VS201364 * Visual Studio 12 2013 Win64
-#
-# INSTALLDIR - root folder where hdf5 is installed
-# CTEST_CONFIGURATION_TYPE - Release, Debug, etc
-# CTEST_SOURCE_NAME - source folder
-##############################################################################
-
-set (CTEST_SOURCE_VERSION "1.8.22")
-set (CTEST_SOURCE_VERSEXT "-snap3")
-
-##############################################################################
-# handle input parameters to script.
-#BUILD_GENERATOR - which CMake generator to use, required
-#INSTALLDIR - HDF5-1.8 root folder
-#CTEST_CONFIGURATION_TYPE - Release, Debug, RelWithDebInfo
-#CTEST_SOURCE_NAME - name of source folder; HDF5-1.8.x
+# VS2015 * Visual Studio 14 2015
+# VS201564 * Visual Studio 14 2015 Win64
+# VS2013 * Visual Studio 12 2013
+# VS201364 * Visual Studio 12 2013 Win64
+#
+# INSTALLDIR - root folder where hdf5 is installed
+# CTEST_CONFIGURATION_TYPE - Release, Debug, etc
+# CTEST_SOURCE_NAME - source folder
+##############################################################################
+
+set (CTEST_SOURCE_VERSION "1.8.22")
+set (CTEST_SOURCE_VERSEXT "-snap3")
+
+##############################################################################
+# handle input parameters to script.
+#BUILD_GENERATOR - which CMake generator to use, required
+#INSTALLDIR - HDF5-1.8 root folder
+#CTEST_CONFIGURATION_TYPE - Release, Debug, RelWithDebInfo
+#CTEST_SOURCE_NAME - name of source folder; HDF5-1.8.x
#MODEL - CDash group name
+#HPC - run alternate configurations for HPC machines; sbatch, bsub, raybsub, qsub
#MPI - enable MPI
-if (DEFINED CTEST_SCRIPT_ARG)
- # transform ctest script arguments of the form
- # script.ctest,var1=value1,var2=value2
- # to variables with the respective names set to the respective values
- string (REPLACE "," ";" script_args "${CTEST_SCRIPT_ARG}")
- foreach (current_var ${script_args})
- if ("${current_var}" MATCHES "^([^=]+)=(.+)$")
- set ("${CMAKE_MATCH_1}" "${CMAKE_MATCH_2}")
- endif ()
- endforeach ()
-endif ()
-
-# build generator must be defined
-if (NOT DEFINED BUILD_GENERATOR)
+if (DEFINED CTEST_SCRIPT_ARG)
+ # transform ctest script arguments of the form
+ # script.ctest,var1=value1,var2=value2
+ # to variables with the respective names set to the respective values
+ string (REPLACE "," ";" script_args "${CTEST_SCRIPT_ARG}")
+ foreach (current_var ${script_args})
+ if ("${current_var}" MATCHES "^([^=]+)=(.+)$")
+ set ("${CMAKE_MATCH_1}" "${CMAKE_MATCH_2}")
+ endif ()
+ endforeach ()
+endif ()
+
+#HPC - run alternate configurations for HPC machines
+if (DEFINED HPC)
+ set (BUILD_GENERATOR "Unix")
+endif ()
+
+# build generator must be defined
+if (NOT DEFINED BUILD_GENERATOR)
message (FATAL_ERROR "BUILD_GENERATOR must be defined - Unix, VS2017, or VS201764, VS2015, VS201564, VS2013, VS201364")
endif ()
@@ -94,6 +100,7 @@ endif ()
###################################################################
######### Following describes compiler ############
+if (NOT DEFINED HPC)
if (NOT DEFINED BUILD_GENERATOR)
message (FATAL_ERROR "BUILD_GENERATOR must be defined - Unix, VS2017, or VS201764, VS2015, VS201564, VS2013, VS201364")
endif ()
@@ -169,6 +176,10 @@ endif ()
set (ENV{CXXFLAGS} "${RR_WARNINGS_CXX} ${RR_FLAGS_CXX}")
endif ()
endif ()
+else ()
+ set (CTEST_SITE "${SITE_OS_NAME}")
+ set (CTEST_CMAKE_GENERATOR "Unix Makefiles")
+endif ()
###################################################################
###################################################################
diff --git a/config/cmake/scripts/HPC/bsub-HDF5options.cmake b/config/cmake/scripts/HPC/bsub-HDF5options.cmake
new file mode 100644
index 0000000..7473e8a
--- /dev/null
+++ b/config/cmake/scripts/HPC/bsub-HDF5options.cmake
@@ -0,0 +1,31 @@
+#
+# Copyright by The HDF Group.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the COPYING file, which can be found at the root of the source code
+# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# If you do not have access to either file, you may request a copy from
+# help@hdfgroup.org.
+#
+#############################################################################################
+#### Change default configuration of options in config/cmake/cacheinit.cmake file ###
+#### format: set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DXXX:YY=ZZZZ") ###
+#############################################################################################
+if (DEFINED MPI)
+ # maximum parallel processor count for build and test ####
+ set (MAX_PROC_COUNT 8)
+endif()
+#############################################################################################
+### options to run test scripts in batch commands
+set (LOCAL_BATCH_SCRIPT_COMMAND "bsub")
+set (LOCAL_BATCH_TEST "TRUE")
+set (LOCAL_BATCH_SCRIPT_NAME "ctestS.lsf")
+set (LOCAL_BATCH_SCRIPT_PARALLEL_NAME "ctestP.lsf")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_TEST:BOOL=ON")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_NAME:STRING=${LOCAL_BATCH_SCRIPT_NAME}")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_PARALLEL_NAME:STRING=${LOCAL_BATCH_SCRIPT_PARALLEL_NAME}")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_EXECUTABLE:STRING=srun")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_NUMPROC_FLAG:STRING=-n")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_MAX_NUMPROCS:STRING=6")
diff --git a/config/cmake/scripts/HPC/qsub-HDF5options.cmake b/config/cmake/scripts/HPC/qsub-HDF5options.cmake
new file mode 100644
index 0000000..34eba1b
--- /dev/null
+++ b/config/cmake/scripts/HPC/qsub-HDF5options.cmake
@@ -0,0 +1,42 @@
+#
+# Copyright by The HDF Group.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the COPYING file, which can be found at the root of the source code
+# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# If you do not have access to either file, you may request a copy from
+# help@hdfgroup.org.
+#
+#############################################################################################
+#### Change default configuration of options in config/cmake/cacheinit.cmake file ###
+#### format: set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DXXX:YY=ZZZZ") ###
+#############################################################################################
+if (DEFINED MPI)
+ # maximum parallel processor count for build and test ####
+ set (MAX_PROC_COUNT 8)
+endif()
+#############################################################################################
+### options to run test scripts in batch commands
+set (LOCAL_BATCH_SCRIPT_NAME "ctest.qsub")
+set (LOCAL_BATCH_SCRIPT_PARALLEL_NAME "ctest.qsub")
+if (DEFINED KNL)
+ ### some additions and alternatives to cross compile on haswell for knl
+ set (COMPUTENODE_HWCOMPILE_MODULE "craype-mic-knl")
+ set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_TOOLCHAIN_FILE:STRING=config/toolchain/crayle.cmake")
+endif ()
+set (LOCAL_BATCH_SCRIPT_COMMAND "qsub")
+set (LOCAL_BATCH_TEST "TRUE")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_TEST:BOOL=ON")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_NAME:STRING=${LOCAL_BATCH_SCRIPT_NAME}")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_PARALLEL_NAME:STRING=${LOCAL_BATCH_SCRIPT_PARALLEL_NAME}")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_EXECUTABLE:STRING=aprun")
+# Option to suppress writing job statistics; to avoid issues with h5diff comparisons.
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_PREFLAGS:STRING=-q")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_NUMPROC_FLAG:STRING=-n")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_MAX_NUMPROCS:STRING=6")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DACCOUNT_ID:STRING=${LOCAL_BATCH_SCRIPT_ARGS}")
+
+#############################################################################################
+#############################################################################################
diff --git a/config/cmake/scripts/HPC/raybsub-HDF5options.cmake b/config/cmake/scripts/HPC/raybsub-HDF5options.cmake
new file mode 100644
index 0000000..fa1ec4a
--- /dev/null
+++ b/config/cmake/scripts/HPC/raybsub-HDF5options.cmake
@@ -0,0 +1,32 @@
+#
+# Copyright by The HDF Group.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the COPYING file, which can be found at the root of the source code
+# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# If you do not have access to either file, you may request a copy from
+# help@hdfgroup.org.
+#
+#############################################################################################
+#### Change default configuration of options in config/cmake/cacheinit.cmake file ###
+#### format: set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DXXX:YY=ZZZZ") ###
+#############################################################################################
+if (DEFINED MPI)
+ # maximum parallel processor count for build and test ####
+ set (MAX_PROC_COUNT 8)
+endif()
+#############################################################################################
+### options to run test scripts in batch commands
+set (LOCAL_BATCH_SCRIPT_COMMAND "raybsub")
+set (LOCAL_BATCH_TEST "TRUE")
+set (LOCAL_BATCH_SCRIPT_NAME "ray_ctestS.lsf")
+set (LOCAL_BATCH_SCRIPT_PARALLEL_NAME "ray_ctestP.lsf")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_TEST:BOOL=ON")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_COMMAND:STRING=${LOCAL_BATCH_SCRIPT_COMMAND}")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_NAME:STRING=${LOCAL_BATCH_SCRIPT_NAME}")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_PARALLEL_NAME:STRING=${LOCAL_BATCH_SCRIPT_PARALLEL_NAME}")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_EXECUTABLE:STRING=mpirun")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_NUMPROC_FLAG:STRING=-np")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_MAX_NUMPROCS:STRING=6")
diff --git a/config/cmake/scripts/HPC/sbatch-HDF5options.cmake b/config/cmake/scripts/HPC/sbatch-HDF5options.cmake
new file mode 100644
index 0000000..3205a1c
--- /dev/null
+++ b/config/cmake/scripts/HPC/sbatch-HDF5options.cmake
@@ -0,0 +1,43 @@
+#
+# Copyright by The HDF Group.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the COPYING file, which can be found at the root of the source code
+# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# If you do not have access to either file, you may request a copy from
+# help@hdfgroup.org.
+#
+#############################################################################################
+#### Change default configuration of options in config/cmake/cacheinit.cmake file ###
+#### format: set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DXXX:YY=ZZZZ") ###
+#############################################################################################
+if (DEFINED MPI)
+ # maximum parallel processor count for build and test ####
+ set (MAX_PROC_COUNT 8)
+endif()
+#############################################################################################
+### options to run test scripts in batch commands
+if (DEFINED KNL)
+ ### some additions and alternatives to cross compile on haswell for knl
+ set (COMPILENODE_HWCOMPILE_MODULE "craype-haswell")
+ set (COMPUTENODE_HWCOMPILE_MODULE "craype-mic-knl")
+ set (LOCAL_BATCH_SCRIPT_NAME "knl_ctestS.sl")
+ set (LOCAL_BATCH_SCRIPT_PARALLEL_NAME "knl_ctestP.sl")
+ set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_TOOLCHAIN_FILE:STRING=config/toolchain/crayle.cmake")
+else ()
+ set (LOCAL_BATCH_SCRIPT_NAME "ctestS.sl")
+ set (LOCAL_BATCH_SCRIPT_PARALLEL_NAME "ctestP.sl")
+endif ()
+set (LOCAL_BATCH_SCRIPT_COMMAND "sbatch")
+set (LOCAL_BATCH_TEST "TRUE")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_TEST:BOOL=ON")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_NAME:STRING=${LOCAL_BATCH_SCRIPT_NAME}")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_PARALLEL_NAME:STRING=${LOCAL_BATCH_SCRIPT_PARALLEL_NAME}")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_EXECUTABLE:STRING=srun")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_NUMPROC_FLAG:STRING=-n")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_MAX_NUMPROCS:STRING=6")
+
+#############################################################################################
+#############################################################################################
diff --git a/config/cmake/wait_H5Tinit.cmake b/config/cmake/wait_H5Tinit.cmake
new file mode 100644
index 0000000..c0b4d06
--- /dev/null
+++ b/config/cmake/wait_H5Tinit.cmake
@@ -0,0 +1,11 @@
+cmake_minimum_required (VERSION 3.10)
+
+message(STATUS "Check for existence of ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c")
+execute_process(COMMAND ls ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c RESULT_VARIABLE H5TI_result OUTPUT_QUIET ERROR_QUIET)
+while(H5TI_result)
+ ctest_sleep(30)
+ message(STATUS "Checking again for existence of ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c")
+ execute_process(COMMAND ls ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c RESULT_VARIABLE H5TI_result OUTPUT_QUIET ERROR_QUIET)
+endwhile(H5TI_result)
+file (TOUCH "${HDF5_BINARY_DIR}/H5Tinit_created")
+message(STATUS "Found ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c")
diff --git a/config/cmake_ext_mod/runTest.cmake b/config/cmake_ext_mod/runTest.cmake
index e601653..6f633f3 100644
--- a/config/cmake_ext_mod/runTest.cmake
+++ b/config/cmake_ext_mod/runTest.cmake
@@ -343,6 +343,15 @@ if (TEST_GREP_COMPARE)
endif ()
endif ()
+# dump the output unless nodisplay option is set
+if (TEST_SKIP_COMPARE AND NOT TEST_NO_DISPLAY)
+ file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
+ execute_process (
+ COMMAND ${CMAKE_COMMAND} -E echo ${TEST_STREAM}
+ RESULT_VARIABLE TEST_RESULT
+ )
+endif ()
+
# everything went fine...
message (STATUS "${TEST_PROGRAM} Passed")
diff --git a/config/toolchain/build32.cmake b/config/toolchain/build32.cmake
index d078956..deb5899 100644
--- a/config/toolchain/build32.cmake
+++ b/config/toolchain/build32.cmake
@@ -3,6 +3,42 @@ if (WIN32)
set (CMAKE_GENERATOR_PLATFORM "x86")
elseif(APPLE)
set (CMAKE_OSX_ARCHITECTURES "i386")
+elseif(MINGW)
+ set (CMAKE_SYSTEM_NAME Windows)
+ set (CMAKE_C_COMPILER i686-w64-mingw32-gcc)
+ set (CMAKE_CXX_COMPILER i686-w64-mingw32-g++)
+ set (CMAKE_RC_COMPILER i686-w64-mingw32-windres)
+ set (CMAKE_Fortran_COMPILER i686-w64-mingw32-gfortran)
+
+ set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -m32" CACHE STRING "c++ flags")
+ set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -m32" CACHE STRING "c flags")
+
+ set (LIB32 /usr/lib) # Fedora
+
+ if (EXISTS "/usr/lib32")
+ set (LIB32 /usr/lib32) # Arch, Solus
+ endif ()
+
+ set (CMAKE_SYSTEM_LIBRARY_PATH ${LIB32} CACHE STRING "system library search path" FORCE)
+ set (CMAKE_LIBRARY_PATH ${LIB32} CACHE STRING "library search path" FORCE)
+
+ # this is probably unlikely to be needed, but just in case
+ set (CMAKE_EXE_LINKER_FLAGS "-m32 -L${LIB32}" CACHE STRING "executable linker flags" FORCE)
+ set (CMAKE_SHARED_LINKER_FLAGS "-m32 -L${LIB32}" CACHE STRING "shared library linker flags" FORCE)
+ set (CMAKE_MODULE_LINKER_FLAGS "-m32 -L${LIB32}" CACHE STRING "module linker flags" FORCE)
+
+ # on Fedora and Arch and similar, point pkgconfig at 32 bit .pc files. We have
+ # to include the regular system .pc files as well (at the end), because some
+ # are not always present in the 32 bit directory
+ if (EXISTS "${LIB32}/pkgconfig")
+ set (ENV{PKG_CONFIG_LIBDIR} ${LIB32}/pkgconfig:/usr/share/pkgconfig:/usr/lib/pkgconfig:/usr/lib64/pkgconfig)
+ endif ()
+
+ set (CMAKE_FIND_ROOT_PATH /usr/i686-w64-mingw32)
+ set (CMAKE_FIND_ROOT_PATH_MODE_PROGRAM NEVER)
+ set (CMAKE_FIND_ROOT_PATH_MODE_LIBRARY ONLY)
+ set (CMAKE_FIND_ROOT_PATH_MODE_INCLUDE ONLY)
+ set (CMAKE_CROSSCOMPILING_EMULATOR wine32)
else ()
set (CMAKE_SYSTEM_NAME Linux)
diff --git a/config/toolchain/crayle.cmake b/config/toolchain/crayle.cmake
new file mode 100644
index 0000000..bf7cf69
--- /dev/null
+++ b/config/toolchain/crayle.cmake
@@ -0,0 +1,10 @@
+# The following line will use cross-compiling
+set(CMAKE_SYSTEM_NAME Linux)
+
+set(CMAKE_COMPILER_VENDOR "CrayLinuxEnvironment")
+
+set(CMAKE_C_COMPILER cc)
+set(CMAKE_Fortran_COMPILER ftn)
+
+# the following is used if cross-compiling
+set(CMAKE_CROSSCOMPILING_EMULATOR "")