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-rw-r--r--config/cmake/CTestCustom.cmake81
-rw-r--r--config/cmake/HDFCompilerFlags.cmake6
-rw-r--r--config/cmake/UseJava.cmake2
-rw-r--r--config/cmake/hdf5-config.cmake.in6
-rw-r--r--config/cmake/libhdf5.settings.cmake.in6
-rwxr-xr-xconfig/cmake/scripts/HDF5config.cmake2
-rw-r--r--config/cmake_ext_mod/FindMPI.cmake287
-rw-r--r--config/cmake_ext_mod/HDFMacros.cmake25
-rw-r--r--config/cmake_ext_mod/HDFUseFortran.cmake8
-rw-r--r--config/cmake_ext_mod/runTest.cmake1
10 files changed, 288 insertions, 136 deletions
diff --git a/config/cmake/CTestCustom.cmake b/config/cmake/CTestCustom.cmake
index 7aff076..33e6d4c 100644
--- a/config/cmake/CTestCustom.cmake
+++ b/config/cmake/CTestCustom.cmake
@@ -45,11 +45,13 @@ set (CTEST_CUSTOM_MEMCHECK_IGNORE
H5TEST-clear-objects
H5TEST-clear-cache-objects
H5TEST-clear-cache_api-objects
+ H5TEST-clear-cache_image-objects
H5TEST-clear-cache_tagging-objects
- H5TEST-clear-ttsafe-objects
H5TEST-clear-err_compat-objects
H5TEST-clear-error_test-objects
+ H5TEST-clear-filenotclosed-objects
H5TEST-clear-links_env-objects
+ H5TEST-clear-ttsafe-objects
PERFORM_h5perform-clear-objects
HL_TOOLS-clear-objects
HL_test-clear-objects
@@ -58,6 +60,18 @@ set (CTEST_CUSTOM_MEMCHECK_IGNORE
CPP_testhdf5-clear-objects
######### tools/h5clear #########
H5CLEAR-clearall-objects
+ H5CLEAR-copy_h5clear_log_v3.h5
+ H5CLEAR-copy_h5clear_mdc_image.h5
+ H5CLEAR-copy_h5clear_sec2_v0.h5
+ H5CLEAR-copy_h5clear_sec2_v2.h5
+ H5CLEAR-copy_h5clear_sec2_v3.h5
+ H5CLEAR-copy_latest_h5clear_log_v3.h5
+ H5CLEAR-copy_latest_h5clear_sec2_v3.h5
+ H5CLEAR-copy_mod_h5clear_mdc_image.h5
+ H5CLEAR-copy_mod_h5clr_mdc_image2.h5
+ H5CLEAR-copy_orig_h5clear_sec2_v0.h5
+ H5CLEAR-copy_orig_h5clear_sec2_v2.h5
+ H5CLEAR-copy_orig_h5clear_sec2_v3.h5
H5CLEAR-h5clear_gentest # does not close ids by design
######### tools/h5copy #########
H5COPY-clearall-objects
@@ -209,6 +223,68 @@ set (CTEST_CUSTOM_MEMCHECK_IGNORE
H5LS_VDS-clearall-objects
######### tools/h5repack #########
H5REPACK-clearall-objects
+ H5REPACK-add_alignment-clear-objects
+ H5REPACK-add_userblock-clear-objects
+ H5REPACK-all_filters-clear-objects
+ H5REPACK-attr-clear-objects
+ H5REPACK-committed_dt-clear-objects
+ H5REPACK-deflate_convert-clear-objects
+ H5REPACK-deflate_copy-clear-objects
+ H5REPACK-deflate_file-clear-objects
+ H5REPACK-deflate_remove-clear-objects
+ H5REPACK-early-clear-objects
+ H5REPACK-error4-clear-objects
+ H5REPACK-family-clear-objects
+ H5REPACK-fill-clear-objects
+ H5REPACK-fletcher_all-clear-objects
+ H5REPACK-fletcher_copy-clear-objects
+ H5REPACK-fletcher_individual-clear-objects
+ H5REPACK-fletcher_remove-clear-objects
+ H5REPACK-global_filters-clear-objects
+ H5REPACK-gt_mallocsize-clear-objects
+ H5REPACK-gzip_all-clear-objects
+ H5REPACK-gzip_individual-clear-objects
+ H5REPACK-hlink-clear-objects
+ H5REPACK-layout-clear-objects
+ H5REPACK-native_attr-clear-objects
+ H5REPACK-native_fill-clear-objects
+ H5REPACK-nbit_add-clear-objects
+ H5REPACK-nbit_copy-clear-objects
+ H5REPACK-nbit_remove-clear-objects
+ H5REPACK-nested_8bit_enum-clear-objects
+ H5REPACK-objs-clear-objects
+ H5REPACK-remove_all-clear-objects
+ H5REPACK-scale_add-clear-objects
+ H5REPACK-scale_copy-clear-objects
+ H5REPACK-scale_remove-clear-objects
+ H5REPACK-shuffle_all-clear-objects
+ H5REPACK-shuffle_copy-clear-objects
+ H5REPACK-shuffle_individual-clear-objects
+ H5REPACK-shuffle_remove-clear-objects
+ H5REPACK-szip_all-clear-objects
+ H5REPACK-szip_convert-clear-objects
+ H5REPACK-szip_copy-clear-objects
+ H5REPACK-szip_individual-clear-objects
+ H5REPACK-szip_remove-clear-objects
+ H5REPACK-upgrade_layout-clear-objects
+ H5REPACK_DMP-crtorder-clear-objects
+ H5REPACK_DMP-deflate_limit-clear-objects
+ H5REPACK-bug1814-clear-objects
+ H5REPACK-HDFFV-5932-clear-objects
+ H5REPACK-HDFFV-7840-clear-objects
+ H5REPACK_META-meta_long_N-clear-objects
+ H5REPACK_META-meta_short_N-clear-objects
+ H5REPACK_OLD-old_style_layout_short_switches-clear-objects
+ H5REPACK_STAT-GS_AGGR-clear-objects
+ H5REPACK_STAT-S_AGGR-clear-objects
+ H5REPACK_STAT-SP_NONE-clear-objects
+ H5REPACK_STAT-SP_PAGE-clear-objects
+ H5REPACK_STAT-SPT_FSM_AGGR-clear-objects
+ H5REPACK_STAT-STG_PAGE-clear-objects
+ #########
+ H5REPACK_META-meta_long
+ H5REPACK_META-meta_short
+ #########
H5REPACK-gzip_verbose_filters #uses runTest.cmake
H5REPACK_VERIFY_LAYOUT-dset2_chunk_20x10 #uses grepTest.cmake
H5REPACK_VERIFY_LAYOUT_ALL-chunk_20x10 #uses grepTest.cmake
@@ -236,6 +312,8 @@ set (CTEST_CUSTOM_MEMCHECK_IGNORE
######### tools/misc #########
H5REPART-clearall-objects
H5MKGRP-clearall-objects
+ ######### tools/perform #########
+ PERFORM_h5perform-clearall-objects
######### hl/tools/h5watch #########
H5WATCH-clearall-objects
######### examples #########
@@ -244,5 +322,6 @@ set (CTEST_CUSTOM_MEMCHECK_IGNORE
CPP_ex_tutr-clear-objects
HL_ex-clear-objects
f90_ex-clear-objects
+ HL_CPP_ex_ptExampleFL-clear-objects
HL_FORTRAN_f90_ex-clear-objects
)
diff --git a/config/cmake/HDFCompilerFlags.cmake b/config/cmake/HDFCompilerFlags.cmake
index 5f71f33..eeb4b97 100644
--- a/config/cmake/HDFCompilerFlags.cmake
+++ b/config/cmake/HDFCompilerFlags.cmake
@@ -13,12 +13,12 @@
# Compiler specific flags : Shouldn't there be compiler tests for these
#-----------------------------------------------------------------------------
if (CMAKE_COMPILER_IS_GNUCC)
- if (CMAKE_BUILD_TYPE MATCHES Debug)
+ if (HDF5_BUILD_TYPE MATCHES Debug)
set (CMAKE_C_FLAGS "${CMAKE_ANSI_CFLAGS} ${CMAKE_C_FLAGS} -std=c99")
if (NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 5.0)
set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -Og -ftrapv -fno-common")
endif ()
- else (CMAKE_BUILD_TYPE MATCHES Debug)
+ else (HDF5_BUILD_TYPE MATCHES Debug)
set (CMAKE_C_FLAGS "${CMAKE_ANSI_CFLAGS} ${CMAKE_C_FLAGS} -std=c99")
if (NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 5.0)
set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -fstdarg-opt")
@@ -26,7 +26,7 @@ if (CMAKE_COMPILER_IS_GNUCC)
endif ()
endif ()
if (CMAKE_COMPILER_IS_GNUCXX AND CMAKE_CXX_COMPILER_LOADED)
- if (CMAKE_BUILD_TYPE MATCHES Debug)
+ if (HDF5_BUILD_TYPE MATCHES Debug)
set (CMAKE_CXX_FLAGS "${CMAKE_ANSI_CFLAGS} ${CMAKE_CXX_FLAGS}")
if (NOT CMAKE_CXX_COMPILER_VERSION VERSION_LESS 5.0)
set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Og -ftrapv -fno-common")
diff --git a/config/cmake/UseJava.cmake b/config/cmake/UseJava.cmake
index 52b37a9..c70f52e 100644
--- a/config/cmake/UseJava.cmake
+++ b/config/cmake/UseJava.cmake
@@ -285,7 +285,7 @@
#
# Example:
# create_javadoc(my_example_doc
-# PACKAGES com.exmaple.foo com.example.bar
+# PACKAGES com.example.foo com.example.bar
# SOURCEPATH "${CMAKE_CURRENT_SOURCE_DIR}"
# CLASSPATH ${CMAKE_JAVA_INCLUDE_PATH}
# WINDOWTITLE "My example"
diff --git a/config/cmake/hdf5-config.cmake.in b/config/cmake/hdf5-config.cmake.in
index 01c27df..421f693 100644
--- a/config/cmake/hdf5-config.cmake.in
+++ b/config/cmake/hdf5-config.cmake.in
@@ -105,12 +105,6 @@ set (HDF5_VERSION_MINOR @HDF5_VERSION_MINOR@)
# project which has already built hdf5 as a subproject
#-----------------------------------------------------------------------------
if (NOT TARGET "@HDF5_PACKAGE@")
- if (${HDF5_PACKAGE_NAME}_ENABLE_Z_LIB_SUPPORT AND ${HDF5_PACKAGE_NAME}_PACKAGE_EXTLIBS AND NOT TARGET "zlib")
- include (@PACKAGE_SHARE_INSTALL_DIR@/@ZLIB_PACKAGE_NAME@@HDF_PACKAGE_EXT@-targets.cmake)
- endif ()
- if (${HDF5_PACKAGE_NAME}_ENABLE_SZIP_SUPPORT AND ${HDF5_PACKAGE_NAME}_PACKAGE_EXTLIBS AND NOT TARGET "szip")
- include (@PACKAGE_SHARE_INSTALL_DIR@/@SZIP_PACKAGE_NAME@@HDF_PACKAGE_EXT@-targets.cmake)
- endif ()
include (@PACKAGE_SHARE_INSTALL_DIR@/@HDF5_PACKAGE@@HDF_PACKAGE_EXT@-targets.cmake)
endif ()
diff --git a/config/cmake/libhdf5.settings.cmake.in b/config/cmake/libhdf5.settings.cmake.in
index 8348af0..28fb876 100644
--- a/config/cmake/libhdf5.settings.cmake.in
+++ b/config/cmake/libhdf5.settings.cmake.in
@@ -1,5 +1,5 @@
- SUMMARY OF THE HDF5 CONFIGURATION
- =================================
+ SUMMARY OF THE HDF5 CONFIGURATION
+ =================================
General Information:
-------------------
@@ -13,7 +13,7 @@ General Information:
Compiling Options:
------------------
- Build Mode: @CMAKE_BUILD_TYPE@
+ Build Mode: @HDF5_BUILD_TYPE@
Debugging Symbols: @SYMBOLS@
Asserts: @ASSERTS@
Profiling: @PROFILING@
diff --git a/config/cmake/scripts/HDF5config.cmake b/config/cmake/scripts/HDF5config.cmake
index e7b73b3..d32a6bdb 100755
--- a/config/cmake/scripts/HDF5config.cmake
+++ b/config/cmake/scripts/HDF5config.cmake
@@ -38,7 +38,7 @@ cmake_minimum_required (VERSION 3.2.2 FATAL_ERROR)
# NO_MAC_FORTRAN - Yes to be SHARED on a Mac
##############################################################################
-set (CTEST_SOURCE_VERSION "1.11.0")
+set (CTEST_SOURCE_VERSION "1.11.2")
set (CTEST_SOURCE_VERSEXT "")
##############################################################################
diff --git a/config/cmake_ext_mod/FindMPI.cmake b/config/cmake_ext_mod/FindMPI.cmake
index 8084472..d01dd35 100644
--- a/config/cmake_ext_mod/FindMPI.cmake
+++ b/config/cmake_ext_mod/FindMPI.cmake
@@ -347,7 +347,7 @@ function (_MPI_check_compiler LANG QUERY_FLAG OUTPUT_VARIABLE RESULT_VARIABLE)
# library that has invalid or missing version information there would be warning
# messages emitted by ld.so in the compiler output. In either case, we'll treat
# the output as invalid.
- if("${WRAPPER_OUTPUT}" MATCHES "undefined reference|unrecognized|need to set|no version information available")
+ if("${WRAPPER_OUTPUT}" MATCHES "undefined reference|unrecognized|need to set|no version information available|command not found")
set(WRAPPER_RETURN 255)
endif()
# Ensure that no error output might be passed upwards.
@@ -615,6 +615,16 @@ function (_MPI_interrogate_compiler lang)
endif()
endif()
+ if(MPI_${LANG}_EXTRA_COMPILE_DEFINITIONS)
+ list(APPEND MPI_COMPILE_DEFINITIONS_WORK "${MPI_${LANG}_EXTRA_COMPILE_DEFINITIONS}")
+ endif()
+ if(MPI_${LANG}_EXTRA_COMPILE_OPTIONS)
+ list(APPEND MPI_COMPILE_OPTIONS_WORK "${MPI_${LANG}_EXTRA_COMPILE_OPTIONS}")
+ endif()
+ if(MPI_${LANG}_EXTRA_LIB_NAMES)
+ list(APPEND MPI_PLAIN_LIB_NAMES_WORK "${MPI_${LANG}_EXTRA_LIB_NAMES}")
+ endif()
+
# If we found MPI, set up all of the appropriate cache entries
if(NOT MPI_${LANG}_COMPILE_OPTIONS)
set(MPI_${LANG}_COMPILE_OPTIONS ${MPI_COMPILE_OPTIONS_WORK} CACHE STRING "MPI ${LANG} compilation options" FORCE)
@@ -823,33 +833,43 @@ endfunction()
macro(_MPI_assemble_libraries LANG)
set(MPI_${LANG}_LIBRARIES "")
- foreach(mpilib IN LISTS MPI_${LANG}_LIB_NAMES)
- list(APPEND MPI_${LANG}_LIBRARIES ${MPI_${mpilib}_LIBRARY})
- endforeach()
+ # Only for libraries do we need to check whether the compiler's linking stage is separate.
+ if(NOT "${MPI_${LANG}_COMPILER}" STREQUAL "${CMAKE_${LANG}_COMPILER}" OR NOT MPI_${LANG}_WORKS_IMPLICIT)
+ foreach(mpilib IN LISTS MPI_${LANG}_LIB_NAMES)
+ list(APPEND MPI_${LANG}_LIBRARIES ${MPI_${mpilib}_LIBRARY})
+ endforeach()
+ endif()
endmacro()
macro(_MPI_assemble_include_dirs LANG)
- set(MPI_${LANG}_INCLUDE_DIRS "${MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS}")
- if("${LANG}" MATCHES "(C|CXX)")
- if(MPI_${LANG}_HEADER_DIR)
- list(APPEND MPI_${LANG}_INCLUDE_DIRS "${MPI_${LANG}_HEADER_DIR}")
- endif()
- else() # Fortran
- if(MPI_${LANG}_F77_HEADER_DIR)
- list(APPEND MPI_${LANG}_INCLUDE_DIRS "${MPI_${LANG}_F77_HEADER_DIR}")
+ if("${MPI_${LANG}_COMPILER}" STREQUAL "${CMAKE_${LANG}_COMPILER}")
+ set(MPI_${LANG}_INCLUDE_DIRS "")
+ else()
+ set(MPI_${LANG}_INCLUDE_DIRS "${MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS}")
+ if("${LANG}" MATCHES "(C|CXX)")
+ if(MPI_${LANG}_HEADER_DIR)
+ list(APPEND MPI_${LANG}_INCLUDE_DIRS "${MPI_${LANG}_HEADER_DIR}")
+ endif()
+ else() # Fortran
+ if(MPI_${LANG}_F77_HEADER_DIR)
+ list(APPEND MPI_${LANG}_INCLUDE_DIRS "${MPI_${LANG}_F77_HEADER_DIR}")
+ endif()
+ if(MPI_${LANG}_MODULE_DIR AND NOT "${MPI_${LANG}_MODULE_DIR}" IN_LIST MPI_${LANG}_INCLUDE_DIRS)
+ list(APPEND MPI_${LANG}_INCLUDE_DIRS "${MPI_${LANG}_MODULE_DIR}")
+ endif()
endif()
- if(MPI_${LANG}_MODULE_DIR AND NOT "${MPI_${LANG}_MODULE_DIR}" IN_LIST MPI_${LANG}_INCLUDE_DIRS)
- list(APPEND MPI_${LANG}_INCLUDE_DIRS "${MPI_${LANG}_MODULE_DIR}")
+ if(MPI_${LANG}_ADDITIONAL_INCLUDE_VARS)
+ foreach(MPI_ADDITIONAL_INC_DIR IN LISTS MPI_${LANG}_ADDITIONAL_INCLUDE_VARS)
+ list(APPEND MPI_${LANG}_INCLUDE_DIRS "${MPI_${MPI_ADDITIONAL_INC_DIR}_INCLUDE_DIR}")
+ endforeach()
endif()
endif()
- if(MPI_${LANG}_ADDITIONAL_INCLUDE_VARS)
- foreach(mpiadditionalinclude IN LISTS MPI_${LANG}_ADDITIONAL_INCLUDE_VARS)
- list(APPEND MPI_${LANG}_INCLUDE_DIRS "${MPI_${mpiadditionalinclude}_INCLUDE_DIR}")
- endforeach()
- endif()
endmacro()
function(_MPI_split_include_dirs LANG)
+ if("${MPI_${LANG}_COMPILER}" STREQUAL "${CMAKE_${LANG}_COMPILER}")
+ return()
+ endif()
# Backwards compatibility: Search INCLUDE_PATH if given.
if(MPI_${LANG}_INCLUDE_PATH)
list(APPEND MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS "${MPI_${LANG}_INCLUDE_PATH}")
@@ -885,6 +905,13 @@ function(_MPI_split_include_dirs LANG)
endif()
mark_as_advanced(MPI_${LANG}_F77_HEADER_DIR MPI_${LANG}_MODULE_DIR)
endif()
+ # Remove duplicates and default system directories from the list.
+ if(MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS)
+ list(REMOVE_DUPLICATES MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS)
+ foreach(MPI_IMPLICIT_INC_DIR IN LISTS CMAKE_${LANG}_IMPLICIT_LINK_DIRECTORIES)
+ list(REMOVE_ITEM MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS ${MPI_IMPLICIT_INC_DIR})
+ endforeach()
+ endif()
set(MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS ${MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS} CACHE STRING "MPI ${LANG} additional include directories" FORCE)
endfunction()
@@ -1014,7 +1041,7 @@ elseif("${CMAKE_HOST_SYSTEM_NAME}" STREQUAL "Windows")
elseif("${CMAKE_HOST_SYSTEM_NAME}" STREQUAL "FreeBSD")
# FreeBSD ships mpich under the normal system paths - but available openmpi implementations
# will be found in /usr/local/mpi/<name>
- MPI_search_mpi_prefix_folder("/usr/local/mpi/")
+ MPI_search_mpi_prefix_folder("/usr/local/mpi")
endif()
# Most MPI distributions have some form of mpiexec or mpirun which gives us something we can look for.
@@ -1050,48 +1077,54 @@ mark_as_advanced(MPIEXEC_EXECUTABLE MPIEXEC_NUMPROC_FLAG MPIEXEC_PREFLAGS MPIEXE
#
# Once we find the new variables, we translate them back into their old
# equivalents below.
-foreach (LANG IN ITEMS C CXX)
- # Old input variables.
- set(_MPI_OLD_INPUT_VARS COMPILER COMPILE_FLAGS INCLUDE_PATH LINK_FLAGS)
-
- # Set new vars based on their old equivalents, if the new versions are not already set.
- foreach (var ${_MPI_OLD_INPUT_VARS})
- if (NOT MPI_${LANG}_${var} AND MPI_${var})
- set(MPI_${LANG}_${var} "${MPI_${var}}")
- endif()
- endforeach()
-
- # Chop the old compile flags into options and definitions
- if(MPI_${LANG}_COMPILE_FLAGS)
- unset(MPI_${LANG}_COMPILE_OPTIONS)
- unset(MPI_${LANG}_COMPILE_DEFINITIONS)
- separate_arguments(MPI_SEPARATE_FLAGS NATIVE_COMMAND "${MPI_${LANG}_COMPILE_FLAGS}")
- foreach(_MPI_FLAG IN LISTS MPI_SEPARATE_FLAGS)
- if("${_MPI_FLAG}" MATCHES "^ *[-/D]([^ ]+)")
- list(APPEND MPI_${LANG}_COMPILE_DEFINITIONS "${CMAKE_MATCH_1}")
- else()
- list(APPEND MPI_${LANG}_COMPILE_FLAGS "${_MPI_FLAG}")
+if(NOT MPI_IGNORE_LEGACY_VARIABLES)
+ foreach (LANG IN ITEMS C CXX)
+ # Old input variables.
+ set(_MPI_OLD_INPUT_VARS COMPILER COMPILE_FLAGS INCLUDE_PATH LINK_FLAGS)
+
+ # Set new vars based on their old equivalents, if the new versions are not already set.
+ foreach (var ${_MPI_OLD_INPUT_VARS})
+ if (NOT MPI_${LANG}_${var} AND MPI_${var})
+ set(MPI_${LANG}_${var} "${MPI_${var}}")
endif()
endforeach()
- unset(MPI_SEPARATE_FLAGS)
- endif()
- # If a list of libraries was given, we'll split it into new-style cache variables
- if(NOT MPI_${LANG}_LIB_NAMES)
- foreach(_MPI_LIB IN LISTS MPI_${LANG}_LIBRARIES MPI_LIBRARY MPI_EXTRA_LIBRARY)
- get_filename_component(_MPI_PLAIN_LIB_NAME "${_MPI_LIB}" NAME_WE)
- get_filename_component(_MPI_LIB_NAME "${_MPI_LIB}" NAME)
- get_filename_component(_MPI_LIB_DIR "${_MPI_LIB}" DIRECTORY)
- list(APPEND MPI_PLAIN_LIB_NAMES_WORK "${_MPI_PLAIN_LIB_NAME}")
- find_library(MPI_${_MPI_PLAIN_LIB_NAME}_LIBRARY
- NAMES "${_MPI_LIB_NAME}" "lib${_MPI_LIB_NAME}"
- HINTS ${_MPI_LIB_DIR} $ENV{MPI_LIB}
- DOC "Location of the ${_MPI_PLAIN_LIB_NAME} library for MPI"
- )
- mark_as_advanced(MPI_${_MPI_PLAIN_LIB_NAME}_LIBRARY)
- endforeach()
- endif()
-endforeach()
+ # Chop the old compile flags into options and definitions
+
+ unset(MPI_${LANG}_EXTRA_COMPILE_DEFINITIONS)
+ unset(MPI_${LANG}_EXTRA_COMPILE_OPTIONS)
+ if(MPI_${LANG}_COMPILE_FLAGS)
+ separate_arguments(MPI_SEPARATE_FLAGS NATIVE_COMMAND "${MPI_${LANG}_COMPILE_FLAGS}")
+ foreach(_MPI_FLAG IN LISTS MPI_SEPARATE_FLAGS)
+ if("${_MPI_FLAG}" MATCHES "^ *[-/D]([^ ]+)")
+ list(APPEND MPI_${LANG}_EXTRA_COMPILE_DEFINITIONS "${CMAKE_MATCH_1}")
+ else()
+ list(APPEND MPI_${LANG}_EXTRA_COMPILE_OPTIONS "${_MPI_FLAG}")
+ endif()
+ endforeach()
+ unset(MPI_SEPARATE_FLAGS)
+ endif()
+
+ # If a list of libraries was given, we'll split it into new-style cache variables
+ unset(MPI_${LANG}_EXTRA_LIB_NAMES)
+ if(NOT MPI_${LANG}_LIB_NAMES)
+ foreach(_MPI_LIB IN LISTS MPI_${LANG}_LIBRARIES MPI_LIBRARY MPI_EXTRA_LIBRARY)
+ if(_MPI_LIB)
+ get_filename_component(_MPI_PLAIN_LIB_NAME "${_MPI_LIB}" NAME_WE)
+ get_filename_component(_MPI_LIB_NAME "${_MPI_LIB}" NAME)
+ get_filename_component(_MPI_LIB_DIR "${_MPI_LIB}" DIRECTORY)
+ list(APPEND MPI_${LANG}_EXTRA_LIB_NAMES "${_MPI_PLAIN_LIB_NAME}")
+ find_library(MPI_${_MPI_PLAIN_LIB_NAME}_LIBRARY
+ NAMES "${_MPI_LIB_NAME}" "lib${_MPI_LIB_NAME}"
+ HINTS ${_MPI_LIB_DIR} $ENV{MPI_LIB}
+ DOC "Location of the ${_MPI_PLAIN_LIB_NAME} library for MPI"
+ )
+ mark_as_advanced(MPI_${_MPI_PLAIN_LIB_NAME}_LIBRARY)
+ endif()
+ endforeach()
+ endif()
+ endforeach()
+endif()
#=============================================================================
unset(MPI_VERSION)
@@ -1100,6 +1133,11 @@ unset(MPI_VERSION_MINOR)
unset(_MPI_MIN_VERSION)
+# If the user specified a library name we assume they prefer that library over a wrapper. If not, they can disable skipping manually.
+if(NOT DEFINED MPI_SKIP_COMPILER_WRAPPER AND MPI_GUESS_LIBRARY_NAME)
+ set(MPI_SKIP_COMPILER_WRAPPER TRUE)
+endif()
+
# This loop finds the compilers and sends them off for interrogation.
foreach(LANG IN ITEMS C CXX Fortran)
if(CMAKE_${LANG}_COMPILER_LOADED)
@@ -1121,6 +1159,8 @@ foreach(LANG IN ITEMS C CXX Fortran)
mark_as_advanced(MPI_CXX_SKIP_MPICXX)
endif()
if(NOT (MPI_${LANG}_LIB_NAMES AND (MPI_${LANG}_INCLUDE_PATH OR MPI_${LANG}_INCLUDE_DIRS OR MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS)))
+ set(MPI_${LANG}_TRIED_IMPLICIT FALSE)
+ set(MPI_${LANG}_WORKS_IMPLICIT FALSE)
if(NOT MPI_${LANG}_COMPILER AND NOT MPI_ASSUME_NO_BUILTIN_MPI)
# Should the imported targets be empty, we effectively try whether the compiler supports MPI on its own, which is the case on e.g.
# Cray PrgEnv.
@@ -1130,80 +1170,90 @@ foreach(LANG IN ITEMS C CXX Fortran)
# If the compiler can build MPI code on its own, it functions as an MPI compiler and we'll set the variable to point to it.
if(MPI_${LANG}_WORKS)
set(MPI_${LANG}_COMPILER "${CMAKE_${LANG}_COMPILER}" CACHE FILEPATH "MPI compiler for ${LANG}" FORCE)
+ set(MPI_${LANG}_WORKS_IMPLICIT TRUE)
endif()
+ set(MPI_${LANG}_TRIED_IMPLICIT TRUE)
endif()
- # If the user specified a library name we assume they prefer that library over a wrapper. If not, they can disable skipping manually.
- if(NOT DEFINED MPI_SKIP_COMPILER_WRAPPER AND MPI_GUESS_LIBRARY_NAME)
- set(MPI_SKIP_COMPILER_WRAPPER TRUE)
- endif()
- if(NOT MPI_SKIP_COMPILER_WRAPPER)
- if(MPI_${LANG}_COMPILER)
- # If the user supplies a compiler *name* instead of an absolute path, assume that we need to find THAT compiler.
- if (NOT IS_ABSOLUTE "${MPI_${LANG}_COMPILER}")
- # Get rid of our default list of names and just search for the name the user wants.
- set(_MPI_${LANG}_COMPILER_NAMES "${MPI_${LANG}_COMPILER}")
- unset(MPI_${LANG}_COMPILER CACHE)
+ if(NOT "${MPI_${LANG}_COMPILER}" STREQUAL "${CMAKE_${LANG}_COMPILER}" OR NOT MPI_${LANG}_WORKS)
+ set(MPI_${LANG}_WRAPPER_FOUND FALSE)
+ set(MPI_PINNED_COMPILER FALSE)
+
+ if(NOT MPI_SKIP_COMPILER_WRAPPER)
+ if(MPI_${LANG}_COMPILER)
+ # If the user supplies a compiler *name* instead of an absolute path, assume that we need to find THAT compiler.
+ if (NOT IS_ABSOLUTE "${MPI_${LANG}_COMPILER}")
+ # Get rid of our default list of names and just search for the name the user wants.
+ set(_MPI_${LANG}_COMPILER_NAMES "${MPI_${LANG}_COMPILER}")
+ unset(MPI_${LANG}_COMPILER CACHE)
+ endif()
+ # If the user specifies a compiler, we don't want to try to search libraries either.
+ set(MPI_PINNED_COMPILER TRUE)
+ endif()
+
+ # If we have an MPI base directory, we'll try all compiler names in that one first.
+ # This should prevent mixing different MPI environments
+ if(_MPI_BASE_DIR)
+ find_program(MPI_${LANG}_COMPILER
+ NAMES ${_MPI_${LANG}_COMPILER_NAMES}
+ PATH_SUFFIXES bin sbin
+ HINTS ${_MPI_BASE_DIR}
+ NO_DEFAULT_PATH
+ DOC "MPI compiler for ${LANG}"
+ )
endif()
- # If the user specifies a compiler, we don't want to try to search libraries either.
- set(MPI_PINNED_COMPILER TRUE)
- else()
- set(MPI_PINNED_COMPILER FALSE)
- endif()
- # If we have an MPI base directory, we'll try all compiler names in that one first.
- # This should prevent mixing different MPI environments
- if(_MPI_BASE_DIR)
+ # If the base directory did not help (for example because the mpiexec isn't in the same directory as the compilers),
+ # we shall try searching in the default paths.
find_program(MPI_${LANG}_COMPILER
NAMES ${_MPI_${LANG}_COMPILER_NAMES}
PATH_SUFFIXES bin sbin
- HINTS ${_MPI_BASE_DIR}
- NO_DEFAULT_PATH
DOC "MPI compiler for ${LANG}"
)
- endif()
- # If the base directory did not help (for example because the mpiexec isn't in the same directory as the compilers),
- # we shall try searching in the default paths.
- find_program(MPI_${LANG}_COMPILER
- NAMES ${_MPI_${LANG}_COMPILER_NAMES}
- PATH_SUFFIXES bin sbin
- DOC "MPI compiler for ${LANG}"
- )
-
- if(MPI_${LANG}_COMPILER STREQUAL CMAKE_${LANG}_COMPILER)
- set(MPI_SKIP_GUESSING TRUE)
- elseif(MPI_${LANG}_COMPILER)
- _MPI_interrogate_compiler(${LANG})
- else()
- set(MPI_${LANG}_WRAPPER_FOUND FALSE)
+ if("${MPI_${LANG}_COMPILER}" STREQUAL "${CMAKE_${LANG}_COMPILER}")
+ set(MPI_PINNED_COMPILER TRUE)
+
+ # If we haven't made the implicit compiler test yet, perform it now.
+ if(NOT MPI_${LANG}_TRIED_IMPLICIT)
+ _MPI_create_imported_target(${LANG})
+ _MPI_check_lang_works(${LANG})
+ endif()
+
+ # Should the MPI compiler not work implicitly for MPI, still interrogate it.
+ # Otherwise, MPI compilers for which CMake has separate linking stages, e.g. Intel MPI on Windows where link.exe is being used
+ # directly during linkage instead of CMAKE_<LANG>_COMPILER will not work.
+ if(NOT MPI_${LANG}_WORKS)
+ set(MPI_${LANG}_WORKS_IMPLICIT FALSE)
+ _MPI_interrogate_compiler(${LANG})
+ else()
+ set(MPI_${LANG}_WORKS_IMPLICIT TRUE)
+ endif()
+ elseif(MPI_${LANG}_COMPILER)
+ _MPI_interrogate_compiler(${LANG})
+ endif()
endif()
- else()
- set(MPI_${LANG}_WRAPPER_FOUND FALSE)
- set(MPI_PINNED_COMPILER FALSE)
- endif()
- if(NOT MPI_${LANG}_WRAPPER_FOUND AND NOT MPI_PINNED_COMPILER)
- # For C++, we may use the settings for C. Should a given compiler wrapper for C++ not exist, but one for C does, we copy over the
- # settings for C. An MPI distribution that is in this situation would be IBM Platform MPI.
- if("${LANG}" STREQUAL "CXX" AND MPI_C_WRAPPER_FOUND)
- set(MPI_${LANG}_COMPILE_OPTIONS ${MPI_C_COMPILE_OPTIONS} CACHE STRING "MPI ${LANG} compilation options" )
- set(MPI_${LANG}_COMPILE_DEFINITIONS ${MPI_C_COMPILE_DEFINITIONS} CACHE STRING "MPI ${LANG} compilation definitions" )
- set(MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS ${MPI_C_INCLUDE_DIRS} CACHE STRING "MPI ${LANG} additional include directories")
- set(MPI_${LANG}_LINK_FLAGS ${MPI_C_LINK_FLAGS} CACHE STRING "MPI ${LANG} linker flags" )
- set(MPI_${LANG}_LIB_NAMES ${MPI_C_LIB_NAMES} CACHE STRING "MPI ${LANG} libraries to link against" )
- set(MPI_${LANG}_WRAPPER_FOUND TRUE)
- elseif(NOT MPI_SKIP_GUESSING)
- _MPI_guess_settings(${LANG})
+ if(NOT MPI_SKIP_GUESSING AND NOT MPI_${LANG}_WRAPPER_FOUND AND NOT MPI_PINNED_COMPILER)
+ # For C++, we may use the settings for C. Should a given compiler wrapper for C++ not exist, but one for C does, we copy over the
+ # settings for C. An MPI distribution that is in this situation would be IBM Platform MPI.
+ if("${LANG}" STREQUAL "CXX" AND MPI_C_WRAPPER_FOUND)
+ set(MPI_${LANG}_COMPILE_OPTIONS ${MPI_C_COMPILE_OPTIONS} CACHE STRING "MPI ${LANG} compilation options" )
+ set(MPI_${LANG}_COMPILE_DEFINITIONS ${MPI_C_COMPILE_DEFINITIONS} CACHE STRING "MPI ${LANG} compilation definitions" )
+ set(MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS ${MPI_C_INCLUDE_DIRS} CACHE STRING "MPI ${LANG} additional include directories")
+ set(MPI_${LANG}_LINK_FLAGS ${MPI_C_LINK_FLAGS} CACHE STRING "MPI ${LANG} linker flags" )
+ set(MPI_${LANG}_LIB_NAMES ${MPI_C_LIB_NAMES} CACHE STRING "MPI ${LANG} libraries to link against" )
+ else()
+ _MPI_guess_settings(${LANG})
+ endif()
endif()
endif()
endif()
_MPI_split_include_dirs(${LANG})
- if(NOT MPI_${LANG}_COMPILER STREQUAL CMAKE_${LANG}_COMPILER)
- _MPI_assemble_include_dirs(${LANG})
- _MPI_assemble_libraries(${LANG})
- endif()
+ _MPI_assemble_include_dirs(${LANG})
+ _MPI_assemble_libraries(${LANG})
+
_MPI_adjust_compile_definitions(${LANG})
# We always create imported targets even if they're empty
_MPI_create_imported_target(${LANG})
@@ -1217,7 +1267,9 @@ foreach(LANG IN ITEMS C CXX Fortran)
set(MPI_${LANG}_COMPILE_DEFINITIONS "" CACHE STRING "MPI ${LANG} compilation definitions" )
set(MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS "" CACHE STRING "MPI ${LANG} additional include directories")
set(MPI_${LANG}_LINK_FLAGS "" CACHE STRING "MPI ${LANG} linker flags" )
- set(MPI_${LANG}_LIB_NAMES "" CACHE STRING "MPI ${LANG} libraries to link against" )
+ if(NOT MPI_${LANG}_COMPILER STREQUAL CMAKE_${LANG}_COMPILER)
+ set(MPI_${LANG}_LIB_NAMES "" CACHE STRING "MPI ${LANG} libraries to link against" )
+ endif()
mark_as_advanced(MPI_${LANG}_COMPILE_OPTIONS MPI_${LANG}_COMPILE_DEFINITIONS MPI_${LANG}_LINK_FLAGS
MPI_${LANG}_LIB_NAMES MPI_${LANG}_ADDITIONAL_INCLUDE_DIRS MPI_${LANG}_COMPILER)
@@ -1337,7 +1389,7 @@ foreach(LANG IN ITEMS C CXX Fortran)
set(MPI_${LANG}_FIND_VERSION_EXACT ${MPI_FIND_VERSION_EXACT})
unset(MPI_${LANG}_REQUIRED_VARS)
- if (MPI_${LANG}_WRAPPER_FOUND OR MPI_${LANG}_GUESS_FOUND)
+ if (NOT "${MPI_${LANG}_COMPILER}" STREQUAL "${CMAKE_${LANG}_COMPILER}")
foreach(mpilibname IN LISTS MPI_${LANG}_LIB_NAMES)
list(APPEND MPI_${LANG}_REQUIRED_VARS "MPI_${mpilibname}_LIBRARY")
endforeach()
@@ -1448,6 +1500,7 @@ if (MPI_NUMLIBS GREATER 1)
else()
set(MPI_EXTRA_LIBRARY "MPI_EXTRA_LIBRARY-NOTFOUND")
endif()
+set(MPI_IGNORE_LEGACY_VARIABLES TRUE)
#=============================================================================
# unset these vars to cleanup namespace
diff --git a/config/cmake_ext_mod/HDFMacros.cmake b/config/cmake_ext_mod/HDFMacros.cmake
index 192a5c8..76e0612 100644
--- a/config/cmake_ext_mod/HDFMacros.cmake
+++ b/config/cmake_ext_mod/HDFMacros.cmake
@@ -9,6 +9,23 @@
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
+
+#-------------------------------------------------------------------------------
+macro (SET_HDF5_BUILD_TYPE)
+ get_property(_isMultiConfig GLOBAL PROPERTY GENERATOR_IS_MULTI_CONFIG)
+ if(_isMultiConfig)
+ set(HDF5_BUILD_TYPE ${CMAKE_CFG_INTDIR})
+ set(HDF5_CFG_BUILD_TYPE \${CMAKE_INSTALL_CONFIG_NAME})
+ else()
+ set(HDF5_CFG_BUILD_TYPE ".")
+ if(CMAKE_BUILD_TYPE)
+ set(HDF5_BUILD_TYPE ${CMAKE_BUILD_TYPE})
+ else()
+ set(HDF5_BUILD_TYPE "Release")
+ endif()
+ endif()
+endmacro ()
+
#-------------------------------------------------------------------------------
macro (SET_GLOBAL_VARIABLE name value)
set (${name} ${value} CACHE INTERNAL "Used to pass variables between directories" FORCE)
@@ -145,7 +162,7 @@ macro (HDF_IMPORT_SET_LIB_OPTIONS libtarget libname libtype libversion)
if (${importtype} MATCHES "IMPORT")
set (importprefix "${CMAKE_STATIC_LIBRARY_PREFIX}")
endif ()
- if (${CMAKE_BUILD_TYPE} MATCHES "Debug")
+ if (${HDF5_BUILD_TYPE} MATCHES "Debug")
set (IMPORT_LIB_NAME ${LIB_DEBUG_NAME})
else ()
set (IMPORT_LIB_NAME ${LIB_RELEASE_NAME})
@@ -160,8 +177,8 @@ macro (HDF_IMPORT_SET_LIB_OPTIONS libtarget libname libtype libversion)
)
else ()
set_target_properties (${libtarget} PROPERTIES
- IMPORTED_IMPLIB "${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/${CMAKE_BUILD_TYPE}/${CMAKE_IMPORT_LIBRARY_PREFIX}${IMPORT_LIB_NAME}${CMAKE_IMPORT_LIBRARY_SUFFIX}"
- IMPORTED_LOCATION "${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/${CMAKE_BUILD_TYPE}/${CMAKE_IMPORT_LIBRARY_PREFIX}${IMPORT_LIB_NAME}${CMAKE_SHARED_LIBRARY_SUFFIX}"
+ IMPORTED_IMPLIB "${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/${HDF5_BUILD_TYPE}/${CMAKE_IMPORT_LIBRARY_PREFIX}${IMPORT_LIB_NAME}${CMAKE_IMPORT_LIBRARY_SUFFIX}"
+ IMPORTED_LOCATION "${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/${HDF5_BUILD_TYPE}/${CMAKE_IMPORT_LIBRARY_PREFIX}${IMPORT_LIB_NAME}${CMAKE_SHARED_LIBRARY_SUFFIX}"
)
endif ()
else ()
@@ -181,7 +198,7 @@ macro (HDF_IMPORT_SET_LIB_OPTIONS libtarget libname libtype libversion)
else ()
if (WIN32 AND NOT MINGW)
set_target_properties (${libtarget} PROPERTIES
- IMPORTED_LOCATION "${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/${CMAKE_BUILD_TYPE}/${IMPORT_LIB_NAME}${CMAKE_STATIC_LIBRARY_SUFFIX}"
+ IMPORTED_LOCATION "${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/${HDF5_BUILD_TYPE}/${IMPORT_LIB_NAME}${CMAKE_STATIC_LIBRARY_SUFFIX}"
IMPORTED_LINK_INTERFACE_LANGUAGES "C"
)
else ()
diff --git a/config/cmake_ext_mod/HDFUseFortran.cmake b/config/cmake_ext_mod/HDFUseFortran.cmake
index 7bf4d81..5be2c49 100644
--- a/config/cmake_ext_mod/HDFUseFortran.cmake
+++ b/config/cmake_ext_mod/HDFUseFortran.cmake
@@ -15,6 +15,14 @@
#-------------------------------------------------------------------------------
ENABLE_LANGUAGE (Fortran)
+#-------------------------------------------------------------------------------
+# Fix Fortran flags if we are compiling staticly on Windows using
+# Windows_MT.cmake from config/cmake/UserMacros
+#-------------------------------------------------------------------------------
+if (BUILD_STATIC_CRT_LIBS)
+ TARGET_STATIC_CRT_FLAGS ()
+endif ()
+
#-----------------------------------------------------------------------------
# Detect name mangling convention used between Fortran and C
#-----------------------------------------------------------------------------
diff --git a/config/cmake_ext_mod/runTest.cmake b/config/cmake_ext_mod/runTest.cmake
index 2479728..5569a73 100644
--- a/config/cmake_ext_mod/runTest.cmake
+++ b/config/cmake_ext_mod/runTest.cmake
@@ -55,6 +55,7 @@ endif ()
if (TEST_ENV_VAR)
set (ENV{${TEST_ENV_VAR}} "${TEST_ENV_VALUE}")
+ #message (STATUS "ENV:${TEST_ENV_VAR}=$ENV{${TEST_ENV_VAR}}")
endif ()
if (NOT TEST_INPUT)
generated by cgit v0.12 at 2025-02-23 11:20:31 (GMT)