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diff --git a/doc/html/Tutor/crtdat.html b/doc/html/Tutor/crtdat.html new file mode 100644 index 0000000..cb07ccd --- /dev/null +++ b/doc/html/Tutor/crtdat.html @@ -0,0 +1,340 @@ +<HTML><HEAD> +<TITLE>HDF5 Tutorial - Creating a Dataset +</TITLE> +</HEAD> + +<body bgcolor="#ffffff"> + +<!-- BEGIN MAIN BODY --> + +<A HREF="http://www.ncsa.uiuc.edu/"><img border=0 +src="http://www.ncsa.uiuc.edu/Images/NCSAhome/footerlogo.gif" +width=78 height=27 alt="NCSA"><P></A> + + [ <A HREF="title.html"><I>HDF5 Tutorial Top</I></A> ] +<H1> +<BIG><BIG><BIG><FONT COLOR="#c101cd">Creating a Dataset</FONT> +</BIG></BIG></BIG></H1> + +<hr noshade size=1> + +<BODY> +<H2>Contents:</H2> +<UL> + <LI> <A HREF="#def">What is a Dataset</A>? + <LI> Programming Example + <UL> + <LI> <A HREF="#desc">Description</A> + <LI> <A HREF="#rem">Remarks</A> + <LI> <A HREF="#fc">File Contents</A> + <LI> <A HREF="#ddl">Dataset Definition in DDL</A> + </UL> +</UL> +<HR> +<A NAME="def"> +<H2>What is a Dataset?</h2> +<P> +A dataset is a multidimensional array of data elements, together with +supporting metadata. To create a dataset, the application program must specify +the location to create the dataset, the dataset name, the data type and space +of the data array, and the dataset creation properties. +<P> + <H3> Data Types</H3> + A data type is a collection of data type properties, all of which can + be stored on disk, and which when taken as a whole, provide complete + information for data conversion to or from that data type. +<P> + There are two categories of data types in HDF5: atomic and compound data + types. An atomic type is a type which cannot be decomposed into smaller + units at the API level. A compound data type is a collection of one or more + atomic types or small arrays of such types. +<P> + Atomic types include integer, float, date and time, string, bit field, and + opaque. Figure 5.1 shows the HDF5 data types. Some of the HDF5 predefined + atomic data types are listed in Figure 5.2. In this tutorial, we consider + only + HDF5 predefined integers. For information on data types, see the HDF5 + User's Guide. +<P> + <B>Fig 5.1</B> <I>HDF5 data types</I> +<PRE> + + +-- integer + +-- floating point + +---- atomic ----+-- date and time + | +-- character string + HDF5 datatypes --| +-- bit field + | +-- opaque + | + +---- compound + +</PRE> + <B>Fig. 5.2</B> <I>Examples of HDF5 predefined data types</I> +<table width="52%" border="1" cellpadding="4"> + <tr bgcolor="#ffcc99" bordercolor="#FFFFFF"> + <td width="20%"><b>Data Type</b></td> + <td width="80%"><b>Description</b></td> + </tr> + <tr bordercolor="#FFFFFF"> + <td bgcolor="#99cccc" width="20%">H5T_STD_I32LE</td> + <td width="80%">Four-byte, little-endian, signed two's complement integer</td> + </tr> + <tr bordercolor="#FFFFFF"> + <td bgcolor="#99cccc" width="20%">H5T_STD_U16BE</td> + <td width="80%">Two-byte, big-endian, unsigned integer</td> + </tr> + <tr bordercolor="#FFFFFF"> + <td bgcolor="#99cccc" width="20%">H5T_IEEE_F32BE</td> + <td width="80%">Four-byte, big-endian, IEEE floating point</td> + </tr> + <tr bordercolor="#FFFFFF"> + <td bgcolor="#99cccc" width="20%">H5T_IEEE_F64LE</td> + <td width="80%">Eight-byte, little-endian, IEEE floating point</td> + </tr> + <tr bordercolor="#FFFFFF"> + <td bgcolor="#99cccc" width="20%">H5T_C_S1</td> + <td width="80%">One-byte, null-terminated string of eight-bit characters</td> + </tr> +</table> + + <H3>Dataspaces</H3> + + A dataspace describes the dimensionality of the data array. A dataspace + is either a regular N-dimensional array of data points, called a simple + dataspace, or a more general collection of data points organized in + another manner, called a complex dataspace. Figure 5.3 shows HDF5 dataspaces. + In this tutorial, we only consider simple dataspaces. +<P> + <B>Fig 5.3</B> <I>HDF5 dataspaces</I> +<PRE> + + +-- simple + HDF5 dataspaces --| + +-- complex + +</PRE> + The dimensions of a dataset can be fixed (unchanging), or they may be + unlimited, which means that they are extendible. A dataspace can also + describe portions of a dataset, making it possible to do partial I/O + operations on selections. + + <h3>Dataset creation properties</H3> + + When creating a dataset, HDF5 allows users to specify how raw data is + organized on disk and how the raw data is compressed. This information is + stored in a dataset creation property list and passed to the dataset + interface. The raw data on disk can be stored contiguously (in the same + linear way that it is organized in memory), partitioned into chunks and + stored externally, etc. In this tutorial, we use the default creation + property list; that is, no compression and + contiguous storage layout is used. For more information about the creation + properties, see the HDF5 User's Guide. + +<P> +In HDF5, data types and spaces are independent objects, which are created +separately from any dataset that they might be attached to. Because of this the +creation of a dataset requires definitions of data type and dataspace. +In this tutorial, we use HDF5 predefined data types (integer) and consider +only simple dataspaces. Hence, only the creation of dataspace objects is +needed. +<P> + +To create an empty dataset (no data written) the following steps need to be +taken: +<OL> +<LI> Obtain the location id where the dataset is to be created. +<LI> Define the dataset characteristics and creation properties. + <UL> + <LI> define a data type + <LI> define a dataspace + <LI> specify dataset creation properties +</UL> +<LI> Create the dataset. +<LI> Close the data type, dataspace, and the property list if necessary. +<LI> Close the dataset. +</OL> +To create a simple dataspace, the calling program must contain the following +calls: +<PRE> + dataspace_id = H5Screate_simple(rank, dims, maxdims); + H5Sclose(dataspace_id ); +</PRE> + +To create a dataset, the calling program must contain the following calls: +<PRE> + dataset_id = H5Dcreate(hid_t loc_id, const char *name, hid_t type_id, + hid_t space_id, hid_t create_plist_id); + H5Dclose (dataset_id); +</PRE> + + +<P> +<H2> Programming Example</H2> +<A NAME="desc"> +<H3><U>Description</U></H3> +The following example shows how to create an empty dataset. +It creates a file called 'dset.h5', defines the dataset dataspace, creates a +dataset which is a 4x6 integer array, and then closes the dataspace, +the dataset, and the file. <BR> +[ <A HREF="examples/h5_crtdat.c">Download h5_crtdat.c</A> ] +<PRE> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ + +#include <hdf5.h> +#define FILE "dset.h5" + +main() { + + hid_t file_id, dataset_id, dataspace_id; /* identifiers */ + hsize_t dims[2]; + herr_t status; + + /* Create a new file using default properties. */ + file_id = H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + + /* Create the data + space for the dataset. */ + dims[0] = 4; + dims[1] = 6; + dataspace_id = H5Screate_simple(2, dims, NULL); + + /* Create the dataset. */ + dataset_id = H5Dcreate(file_id, "/dset", H5T_STD_I32BE, dataspace_id, + H5P_DEFAULT); + + /* End access to the dataset and release resources used by it. */ + status = H5Dclose(dataset_id); + + /* Terminate access to the data space. */ + status = H5Sclose(dataspace_id); + + /* Close the file. */ + status = H5Fclose(file_id); +} ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +</PRE> + +<A NAME="rem"> +<H3><U>Remarks</U></H3> +<UL> +<LI> H5Screate_simple creates a new simple data space and returns a data space + identifier. +<PRE> + hid_t H5Screate_simple (int rank, const hsize_t * dims, + const hsize_t * maxdims) +</PRE> +<UL> + <LI> The first parameter specifies the rank of the dataset. + + <LI> The second parameter specifies the size of the dataset. + + <LI> The third parameter is for the upper limit on the size of the dataset. + If it is NULL, the upper limit is the same as the dimension + sizes specified by the second parameter. +</UL> +<P> +<LI> H5Dcreate creates a dataset at the specified location and returns a + dataset identifier. +<PRE> + hid_t H5Dcreate (hid_t loc_id, const char *name, hid_t type_id, + hid_t space_id, hid_t create_plist_id) +</PRE> +<UL> + <LI> The first parameter is the location identifier. + + <LI> The second parameter is the name of the dataset to create. + + <LI> The third parameter is the data type identifier. H5T_STD_I32BE, a + 32-bit Big Endian integer, is an HDF atomic data type. + + <LI> The fourth parameter is the data space identifier. + + <LI> The last parameter specifies the dataset creation property list. + H5P_DEFAULT specifies the default dataset creation property list. +</UL> +<P> +<LI>H5Dcreate creates an empty array and initializes the data to 0. +<P> +<LI> When a dataset is no longer accessed by a program, H5Dclose must be +called to release the resource used by the dataset. This call is mandatory. +<PRE> + hid_t H5Dclose (hid_t dataset_id) +</PRE> +</UL> + +<A NAME="fc"> +<H3><U>File Contents</U></H3> +The file contents of 'dset.h5' are shown is <B>Figure 5.4</B> and <B>Figure 5.5</B>. +<table width="73%" border="1" cellspacing="4" bordercolor="#FFFFFF"> + <tr bordercolor="#FFFFFF"> + <td width="37%"><b>Figure 5.4</b> <i>The Contents of 'dset.h5'</i> + </td> + <td width="63%"><b>Figure 5.5</b> <i>'dset.h5' in DDL</i> </td> + </tr> + <tr bordercolor="#000000"> +<!-- <td width="37%"><IMG src="dseth5.jpg" width="206" height="333"></td> --> + <td width="37%"><IMG src="img002.gif"></td> + <td width="63%"> + <pre> HDF5 "dset.h5" { + GROUP "/" { + DATASET "dset" { + DATATYPE { H5T_STD_I32BE } + DATASPACE { SIMPLE ( 4, 6 ) / ( 4, 6 ) } + DATA { + 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0 + } + } + } + } +</pre> + </td> + </tr> +</table> + + + +<A NAME="ddl"> +<h3><U>Dataset Definition in DDL</U></H3> +The following is the simplified DDL dataset definition: +<P> + <B>Fig. 5.6</B> <I>HDF5 Dataset Definition</I> +<PRE> + <dataset> ::= DATASET "<dataset_name>" { <data type> + <dataspace> + <data> + <dataset_attribute>* } + + <data type> ::= DATATYPE { <atomic_type> } + + <dataspace> ::= DATASPACE { SIMPLE <current_dims> / <max_dims> } + + <dataset_attribute> ::= <attribute> +</PRE> + + +<!-- BEGIN FOOTER INFO --> + +<P><hr noshade size=1> +<font face="arial,helvetica" size="-1"> + <a href="http://www.ncsa.uiuc.edu/"><img border=0 + src="http://www.ncsa.uiuc.edu/Images/NCSAhome/footerlogo.gif" + width=78 height=27 alt="NCSA"><br> + The National Center for Supercomputing Applications</A><br> + <a href="http://www.uiuc.edu/">University of Illinois + at Urbana-Champaign</a><br> + <br> +<!-- <A HREF="helpdesk.mail.html"> --> +<A HREF="mailto:hdfhelp@@ncsa.uiuc.edu"> +hdfhelp@@ncsa.uiuc.edu</A> +<BR> <H6>Last Modified: August 27, 1999</H6><BR> +<!-- modified by Barbara Jones - bljones@@ncsa.uiuc.edu --> +</FONT> +<BR> +<!-- <A HREF="mailto:hdfhelp@@ncsa.uiuc.edu"> --> + +</BODY> +</HTML> + |