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+/******************************************************************
+ * DatasetRdWt.java (for HDF5 tutorial lesson 6)
+ *
+ * -- Reading and Writing an existing Dataset
+ * (a java conversion from h5_rdwt.c)
+ *
+ ******************************************************************/
+
+import ncsa.hdf.hdf5lib.*;
+import ncsa.hdf.hdf5lib.exceptions.*;
+
+public class DatasetRdWt
+{
+ public static void main(String []argv)
+ {
+ final String FILE = "dset.h5";
+ int file_id = -1; // file identifier
+ int dataset_id = -1; // dataset identifier
+ int status = -1;
+ int[][] dset_data = new int[4][6];
+
+ // Initialize the dataset.
+ for (int i = 0; i < 4; i++)
+ for (int j = 0; j < 6; j++)
+ dset_data[i][j] = i * 6 + j + 1;
+
+ // Open an existing file
+ file_id = H5Fopen_wrap (FILE, HDF5Constants.H5F_ACC_RDWR,
+ HDF5Constants.H5P_DEFAULT);
+
+ // Open an existing dataset.
+ dataset_id = H5Dopen_wrap (file_id, "/dset");
+
+ // Write the dataset.
+ status = H5Dwrite_wrap
+ (dataset_id, H5.J2C (HDF5CDataTypes.JH5T_NATIVE_INT),
+ HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, dset_data);
+
+ status = H5Dread_wrap
+ (dataset_id, H5.J2C (HDF5CDataTypes.JH5T_NATIVE_INT),
+ HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, dset_data);
+
+ // Close the dataset.
+ status = H5Dclose_wrap (dataset_id);
+
+ // Close the file.
+ status = H5Fclose_wrap (file_id);
+ }
+
+
+ // Help function for opening an existing file
+ public static int H5Fopen_wrap (String name, int flags, int access_id)
+ {
+ int file_id = -1; // file identifier
+ try
+ {
+ // Create a new file using default file properties.
+ file_id = H5.H5Fopen (name, flags, access_id);
+ }
+ catch (HDF5Exception hdf5e)
+ {
+ System.out.println
+ ("DatasetRdWt.H5Fopen_wrap() with HDF5Exception: "
+ + hdf5e.getMessage());
+ }
+ catch (Exception e)
+ {
+ System.out.println
+ ("DatasetRdWt.H5Fopen_wrap() with other Exception: "
+ + e.getMessage());
+ }
+ return file_id;
+ }
+
+
+ // Help function for opening an existing dataset
+ public static int H5Dopen_wrap (int loc_id, String name)
+ {
+ int dataset_id = -1; // dataset identifier
+
+ try
+ {
+ // Opening an existing dataset
+ dataset_id = H5.H5Dopen (loc_id, name);
+ }
+ catch (HDF5Exception hdf5e)
+ {
+ System.out.println
+ ("DatasetRdWt.H5Dopen_wrap() with HDF5Exception: "
+ + hdf5e.getMessage());
+ }
+ catch (Exception e)
+ {
+ System.out.println
+ ("DatasetRdWt.H5Dopen_wrap() with other Exception: "
+ + e.getMessage());
+ }
+ return dataset_id;
+ }
+
+
+ // Help function for writing the dataset
+ public static int H5Dwrite_wrap (int dataset_id, int mem_type_id,
+ int mem_space_id, int file_space_id,
+ int xfer_plist_id, Object buf)
+ {
+ int status = -1;
+
+ try
+ {
+ // Write the dataset.
+ status = H5.H5Dwrite (dataset_id, mem_type_id, mem_space_id,
+ file_space_id, xfer_plist_id, buf);
+ }
+ catch (HDF5Exception hdf5e)
+ {
+ System.out.println
+ ("DatasetRdWt.H5Dwrite_wrap() with HDF5Exception: "
+ + hdf5e.getMessage());
+ }
+ catch (Exception e)
+ {
+ System.out.println
+ ("DatasetRdWt.H5Dwrite_wrap() with other exception: "
+ + e.getMessage());
+ }
+ return status;
+ }
+
+
+ // Help function for reading the dataset
+ public static int H5Dread_wrap (int dataset_id, int mem_type_id,
+ int mem_space_id, int file_space_id,
+ int xfer_plist_id, Object obj)
+ {
+ int status = -1;
+
+ try
+ {
+ // Read the dataset.
+ status = H5.H5Dread (dataset_id, mem_type_id, mem_space_id,
+ file_space_id, xfer_plist_id, obj);
+ }
+ catch (HDF5Exception hdf5e)
+ {
+ System.out.println
+ ("DatasetRdWt.H5Dread_wrap() with HDF5Exception: "
+ + hdf5e.getMessage());
+ }
+ catch (Exception e)
+ {
+ System.out.println
+ ("DatasetRdWt.H5Dread_wrap() with other exception: "
+ + e.getMessage());
+ }
+ return status;
+ }
+
+
+ // Help function for ending access to the dataset and releasing
+ // resources used by it.
+ public static int H5Dclose_wrap (int dataset_id)
+ {
+ int status = -1;
+
+ try
+ {
+ // End access to the dataset and release resources used by it.
+ status = H5.H5Dclose (dataset_id);
+ }
+ catch (HDF5Exception hdf5e)
+ {
+ System.out.println
+ ("DatasetRdWt.H5Dclose_wrap() with HDF5Exception: "
+ + hdf5e.getMessage());
+ }
+ catch (Exception e)
+ {
+ System.out.println
+ ("DatasetRdWt.H5Dclose_wrap() with other exception: "
+ + e.getMessage());
+ }
+ return status;
+ }
+
+
+ // Help function for terminating access to the file.
+ public static int H5Fclose_wrap (int file_id)
+ {
+ int status = -1;
+
+ try
+ {
+ // Terminate access to the file.
+ status = H5.H5Fclose (file_id);
+ }
+ catch (HDF5Exception hdf5e)
+ {
+ System.out.println
+ ("DatasetRdWt.H5Fclose_wrap() with HDF5Exception: "
+ + hdf5e.getMessage());
+ }
+ catch (Exception e)
+ {
+ System.out.println
+ ("DatasetRdWt.H5Fclose_wrap() with other exception: "
+ + e.getMessage());
+ }
+ return status;
+ }
+}