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Diffstat (limited to 'doc/html/Tutor/examples/java')
38 files changed, 0 insertions, 3998 deletions
diff --git a/doc/html/Tutor/examples/java/Compound.java b/doc/html/Tutor/examples/java/Compound.java deleted file mode 100644 index 219e1c1..0000000 --- a/doc/html/Tutor/examples/java/Compound.java +++ /dev/null @@ -1,540 +0,0 @@ -/****************************************************************** - * Compound.java (for HDF5 tutorial lesson 11) - * - * -- Creating a compound data type - * (a java conversion from compound.c) - * - ******************************************************************/ - -import ncsa.hdf.hdf5lib.*; -import ncsa.hdf.hdf5lib.exceptions.*; - -public class Compound -{ - public static void main (String []argv) - { - final String FILE = "SDScompound.h5"; - final String DATASETNAME = "ArrayOfStructures"; - final int LENGTH = 10; - final int RANK = 1; - - /* First structure and dataset */ - /* an array of LENGTH 'complex' numbers */ - byte[] data1 = new byte[LENGTH * 16]; - - int[] AR = new int[1]; - float[] BR = new float[1]; - double[] CR = new double[1]; - - byte [] ARec = new byte[4]; - byte [] BRec = new byte[4]; - byte [] CRec = new byte[8]; - - int s1_tid; /* File datatype identifier */ - - /* Second structure (subset of s1_t) and dataset*/ - byte[] data2 = new byte[LENGTH * 12]; - int s2_tid; /* Memory datatype handle */ - - /* Third "structure" ( will be used to read float field of s1) */ - int s3_tid; /* Memory datatype handle */ - float[] s3 = new float[LENGTH]; - - int i; - int file, dataset, space; /* Handles */ - int status; - long[] dim = new long[1]; /* Dataspace dimensions */ - dim[0] = LENGTH; - - /* - * Initialize the data - */ - for (i = 0; i < LENGTH; i++) - { - AR[0] = (int) i; - BR[0] = (float) i * i; - CR[0] = (double) 1. / (i + 1); - - ARec = HDFNativeData.intToByte (0, 1, AR); - BRec = HDFNativeData.floatToByte (0, 1, BR); - CRec = HDFNativeData.doubleToByte (0, 1, CR); - - System.arraycopy (ARec, 0, data1, (i * 16), 4); - System.arraycopy (BRec, 0, data1, (i * 16) + 4, 4); - System.arraycopy (CRec, 0, data1, (i * 16) + 8, 8); - } - - /* - * Create the data space. - */ - space = H5Screate_simple_wrap (RANK, dim, null); - - /* - * Create the file. - */ - file = H5Fcreate_wrap (FILE, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT); - - /* - * Create the memory data type. - */ - s1_tid = H5Tcreate_wrap (HDF5Constants.H5T_COMPOUND, 16); - H5Tinsert_wrap (s1_tid, "a_name", 0, - H5.J2C (HDF5CDataTypes.JH5T_NATIVE_INT)); - H5Tinsert_wrap (s1_tid, "b_name", 4, - H5.J2C (HDF5CDataTypes.JH5T_NATIVE_FLOAT)); - H5Tinsert_wrap (s1_tid, "c_name", 8, - H5.J2C (HDF5CDataTypes.JH5T_NATIVE_DOUBLE)); - - /* - * Create the dataset. - */ - dataset = H5Dcreate_wrap (file, DATASETNAME, s1_tid, - space, HDF5Constants.H5P_DEFAULT); - - /* - * Wtite data to the dataset; - */ - status = H5Dwrite_wrap (dataset, s1_tid, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, data1); - - /* - * Release resources - */ - H5Tclose_wrap (s1_tid); - H5Sclose_wrap (space); - H5Dclose_wrap (dataset); - H5Fclose_wrap (file); - - /* - * Open the file and the dataset. - */ - file = H5Fopen_wrap (FILE, HDF5Constants.H5F_ACC_RDONLY, - HDF5Constants.H5P_DEFAULT); - - dataset = H5Dopen_wrap (file, DATASETNAME); - - /* - * Create a data type for s2 - */ - s2_tid = H5Tcreate_wrap (HDF5Constants.H5T_COMPOUND, 12); - H5Tinsert_wrap (s2_tid, "c_name", 0, - H5.J2C (HDF5CDataTypes.JH5T_NATIVE_DOUBLE)); - H5Tinsert_wrap (s2_tid, "a_name", 8, - H5.J2C (HDF5CDataTypes.JH5T_NATIVE_INT)); - - /* - * Read two fields c and a from s1 dataset. Fields in the file - * are found by their names "c_name" and "a_name". - */ - status = H5Dread_wrap (dataset, s2_tid, HDF5Constants.H5S_ALL, - HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, data2); - - /* - * Display the fields. Convert from bytes into numbers. - */ - System.out.println ("\nField c : "); - for( i = 0; i < LENGTH; i++) { - System.arraycopy (data2, (i*12), CRec, 0, 8); - CR = HDFNativeData.byteToDouble(0, 1, CRec); - System.out.print (CR[0]+" "); - } - System.out.println (); - - System.out.println("\nField a :"); - for( i = 0; i < LENGTH; i++) { - System.arraycopy (data2, (i*12)+8, ARec, 0, 4); - AR = HDFNativeData.byteToInt(0, 1, ARec); - System.out.print (AR[0]+" "); - } - System.out.println (); - - /* - * Create a data type for s3. - */ - s3_tid = H5Tcreate_wrap (HDF5Constants.H5T_COMPOUND, 4); - - status = - H5Tinsert_wrap (s3_tid, "b_name", 0, - H5.J2C (HDF5CDataTypes.JH5T_NATIVE_FLOAT)); - - /* - * Read field b from s1 dataset. Field in the file is found by its name. - */ - status = H5Dread_wrap (dataset, s3_tid, HDF5Constants.H5S_ALL, - HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, s3); - - /* - * Display the field. Data is read directly into array of 'float'. - */ - System.out.println (); - System.out.println ("Field b :"); - for( i = 0; i < LENGTH; i++) { - System.out.print (s3[i]+" "); - } - System.out.println (); - - /* - * Release resources - */ - H5Tclose_wrap (s2_tid); - H5Tclose_wrap (s3_tid); - H5Dclose_wrap (dataset); - H5Fclose_wrap (file); - } - - - // Help function for creating a new file - public static int H5Fcreate_wrap (String name, int flags, - int create_id, int access_id) - { - int file_id = -1; // file identifier - try - { - // Create a new file using default file properties. - file_id = H5.H5Fcreate (name, flags, create_id, access_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("Compound.H5Fcreate_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("Compound.H5Fcreate_wrap() with other Exception: " - + e.getMessage()); - } - return file_id; - } - - - // Help function for adding another member to the compound - // datatype datatype_id. - public static int H5Tinsert_wrap (int type_id, String name, - long offset, int field_id) - { - int status = -1; - try - { - // Adding another member to the compound datatype datatype_id. - status = H5.H5Tinsert (type_id, name, offset, field_id); - - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("Compound.H5Tinsert_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("Compound.H5Tinsert_wrap() with HDF5Exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for creating the memory data type. - public static int H5Tcreate_wrap (int dclass, int size) - { - int datatype_id = -1; // memory data type identifier - try - { - // Create the memory data type. - datatype_id = H5.H5Tcreate (dclass, size); - - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("Compound.H5Tcreate_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("Compound.H5Tcreate_wrap() with other Exception: " - + e.getMessage()); - } - return datatype_id; - } - - - // Help function for opening an existing file - public static int H5Fopen_wrap (String name, int flags, int access_id) - { - int file_id = -1; // file identifier - try - { - // Create a new file using default file properties. - file_id = H5.H5Fopen (name, flags, access_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("Compound.H5Fopen_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("Compound.H5Fopen_wrap() with other Exception: " - + e.getMessage()); - } - return file_id; - } - - - // Help function for opening an existing dataset - public static int H5Dopen_wrap (int loc_id, String name) - { - int dataset_id = -1; // dataset identifier - - try - { - // Opening an existing dataset - dataset_id = H5.H5Dopen (loc_id, name); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("Compound.H5Dopen_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("Compound.H5Dopen_wrap() with other Exception: " - + e.getMessage()); - } - return dataset_id; - } - - - // Help function for creating a new simple dataspace and opening it - // for access - public static int H5Screate_simple_wrap (int rank, long dims[], - long maxdims[]) - { - int dataspace_id = -1; // dataspace identifier - - try - { - // Create the data space for the dataset. - dataspace_id = H5.H5Screate_simple (rank, dims, maxdims); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("Compound.H5Screate_simple_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("Compound.H5Screate_simple_wrap() with other Exception: " - + e.getMessage()); - } - return dataspace_id; - } - - - // Help function for creating a dataset - public static int H5Dcreate_wrap (int loc_id, String name, int type_id, - int space_id, int create_plist_id) - { - int dataset_id = -1; // dataset identifier - - try - { - // Create the dataset - dataset_id = H5.H5Dcreate (loc_id, name, type_id, space_id, - create_plist_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("Compound.H5Dcreate_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("Compound.H5Dcreate_wrap() with other Exception: " - + e.getMessage()); - } - return dataset_id; - } - - - // Help function for writing the dataset - public static int H5Dwrite_wrap (int dataset_id, int mem_type_id, - int mem_space_id, int file_space_id, - int xfer_plist_id, Object buf) - { - int status = -1; - - try - { - // Write the dataset. - status = H5.H5Dwrite (dataset_id, mem_type_id, mem_space_id, - file_space_id, xfer_plist_id, buf); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("Compound.H5Dwrite_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("Compound.H5Dwrite_wrap() with other exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for reading the dataset - public static int H5Dread_wrap (int dataset_id, int mem_type_id, - int mem_space_id, int file_space_id, - int xfer_plist_id, Object obj) - { - int status = -1; - - try - { - // Read the dataset. - status = H5.H5Dread (dataset_id, mem_type_id, mem_space_id, - file_space_id, xfer_plist_id, obj); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("Compound.H5Dread_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("Compound.H5Dread_wrap() with other exception: " - + e.getMessage()); - } - return status; - } - - - - // Help function for terminating access to the data space. - public static int H5Sclose_wrap (int dataspace_id) - { - int status = -1; - - try - { - // Terminate access to the data space. - status = H5.H5Sclose (dataspace_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("Compound.H5Sclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("Compound.H5Sclose_wrap() with other exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for releasing a datatype. - public static int H5Tclose_wrap (int type_id) - { - int status = -1; - - try - { - // Releasing a datatype. - status = H5.H5Tclose (type_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("Compound.H5Tclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("Compound.H5Tclose_wrap() with other exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for ending access to the dataset and releasing - // resources used by it. - public static int H5Dclose_wrap (int dataset_id) - { - int status = -1; - - try - { - // End access to the dataset and release resources used by it. - status = H5.H5Dclose (dataset_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("Compound.H5Dclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("Compound.H5Dclose_wrap() with other exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for terminating access to the file. - public static int H5Fclose_wrap (int file_id) - { - int status = -1; - - try - { - // Terminate access to the file. - status = H5.H5Fclose (file_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("Compound.H5Fclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("Compound.H5Fclose_wrap() with other exception: " - + e.getMessage()); - } - return status; - } -} diff --git a/doc/html/Tutor/examples/java/Copy.java b/doc/html/Tutor/examples/java/Copy.java deleted file mode 100644 index f174210..0000000 --- a/doc/html/Tutor/examples/java/Copy.java +++ /dev/null @@ -1,541 +0,0 @@ -/****************************************************************** - * Copy.java (for HDF5 tutorial lesson 13) - * - * -- Showing how to use the H5SCOPY function. - * (a java conversion from h5_copy.c) - * - ******************************************************************/ - -import ncsa.hdf.hdf5lib.*; -import ncsa.hdf.hdf5lib.exceptions.*; - -public class Copy -{ - public static void main (String []argv) - { - final String FILE1 = "copy1.h5"; - final String FILE2 = "copy2.h5"; - - final int RANK = 2; - final int DIM1 = 3; - final int DIM2 = 4; - final int NUMP = 2; - - int file1, file2, dataset1, dataset2; - int mid1, mid2, fid1, fid2; - long[] fdim = new long[2]; - fdim[0] = DIM1; - fdim[1] = DIM2; - long[] mdim = new long[2]; - fdim[0] = DIM1; - fdim[1] = DIM2; - - long[] start = new long[2]; - long[] stride = new long[2]; - long[] count = new long[2]; - long[] block = new long[2]; - - int[][] buf1 = new int[DIM1][DIM2]; - int[][] buf2 = new int[DIM1][DIM2]; - int[][] bufnew = new int[DIM1][DIM2]; - - int[] val = new int[2]; - val[0] = 53; - val[1] = 59; - - long[] marray = {2}; - long[][] coord = new long[NUMP][RANK]; - int ret; - int i, j; - - -/***********************************************************************/ -/* */ -/* Create two files containing identical datasets. Write 0's to one */ -/* and 1's to the other. */ -/* */ -/***********************************************************************/ - - for ( i = 0; i < DIM1; i++ ) - for ( j = 0; j < DIM2; j++ ) - buf1[i][j] = 0; - - for ( i = 0; i < DIM1; i++ ) - for ( j = 0; j < DIM2; j++ ) - buf2[i][j] = 1; - - file1 = H5Fcreate_wrap (FILE1, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT); - file2 = H5Fcreate_wrap (FILE2, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT); - - fid1 = H5Screate_simple_wrap (RANK, fdim, null); - fid2 = H5Screate_simple_wrap (RANK, fdim, null); - - dataset1 = H5Dcreate_wrap - (file1, "Copy1", H5.J2C (HDF5CDataTypes.JH5T_NATIVE_INT), fid1, - HDF5Constants.H5P_DEFAULT); - - dataset2 = H5Dcreate_wrap - (file2, "Copy2", H5.J2C (HDF5CDataTypes.JH5T_NATIVE_INT), fid2, - HDF5Constants.H5P_DEFAULT); - - - ret = H5Dwrite_wrap (dataset1, H5.J2C (HDF5CDataTypes.JH5T_NATIVE_INT), - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, buf1); - - ret = H5Dwrite_wrap (dataset2, H5.J2C (HDF5CDataTypes.JH5T_NATIVE_INT), - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, buf2); - - ret = H5Dclose_wrap (dataset1); - ret = H5Dclose_wrap (dataset2); - - ret = H5Sclose_wrap (fid1); - ret = H5Sclose_wrap (fid2); - - ret = H5Fclose_wrap (file1); - ret = H5Fclose_wrap (file2); - - -/***********************************************************************/ -/* */ -/* Open the two files. Select two points in one file, write values to */ -/* those point locations, then do H5Scopy and write the values to the */ -/* other file. Close files. */ -/* */ -/***********************************************************************/ - - file1 = H5Fopen_wrap (FILE1, HDF5Constants.H5F_ACC_RDWR, - HDF5Constants.H5P_DEFAULT); - - file2 = H5Fopen_wrap (FILE2, HDF5Constants.H5F_ACC_RDWR, - HDF5Constants.H5P_DEFAULT); - - dataset1 = H5Dopen_wrap (file1, "Copy1"); - dataset2 = H5Dopen_wrap (file2, "Copy2"); - - fid1 = H5Dget_space_wrap (dataset1); - mid1 = H5Screate_simple_wrap (1, marray, null); - - coord[0][0] = 0; coord[0][1] = 3; - coord[1][0] = 0; coord[1][1] = 1; - - ret = H5Sselect_elements_wrap (fid1, HDF5Constants.H5S_SELECT_SET, - NUMP, coord); - - ret = H5Dwrite_wrap (dataset1, H5.J2C (HDF5CDataTypes.JH5T_NATIVE_INT), - mid1, fid1, HDF5Constants.H5P_DEFAULT, val); - - fid2 = H5Scopy_wrap (fid1); - - ret = H5Dwrite_wrap (dataset2, H5.J2C (HDF5CDataTypes.JH5T_NATIVE_INT), - mid1, fid2, HDF5Constants.H5P_DEFAULT, val); - - ret = H5Dclose_wrap (dataset1); - ret = H5Dclose_wrap (dataset2); - ret = H5Sclose_wrap (fid1); - ret = H5Sclose_wrap (fid2); - ret = H5Fclose_wrap (file1); - ret = H5Fclose_wrap (file2); - ret = H5Sclose_wrap (mid1); - - -/***********************************************************************/ -/* */ -/* Open both files and print the contents of the datasets. */ -/* */ -/***********************************************************************/ - - file1 = H5Fopen_wrap (FILE1, HDF5Constants.H5F_ACC_RDWR, - HDF5Constants.H5P_DEFAULT); - file2 = H5Fopen_wrap (FILE2, HDF5Constants.H5F_ACC_RDWR, - HDF5Constants.H5P_DEFAULT); - dataset1 = H5Dopen_wrap (file1, "Copy1"); - dataset2 = H5Dopen_wrap (file2, "Copy2"); - - ret = H5Dread_wrap (dataset1, H5.J2C (HDF5CDataTypes.JH5T_NATIVE_INT), - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, bufnew); - - System.out.println ("\nDataset 'Copy1' in file 'copy1.h5' contains: "); - - for (i = 0;i < DIM1; i++) - { - for (j = 0;j < DIM2; j++) - System.out.print (bufnew[i][j]); - System.out.println (); - } - - System.out.println ("\nDataset 'Copy2' in file 'copy2.h5' contains: "); - - ret = H5Dread_wrap (dataset2, H5.J2C (HDF5CDataTypes.JH5T_NATIVE_INT), - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, bufnew); - - for (i = 0;i < DIM1; i++) - { - for (j = 0;j < DIM2; j++) - System.out.print (bufnew[i][j]); - System.out.println (); - } - - ret = H5Dclose_wrap (dataset1); - ret = H5Dclose_wrap (dataset2); - ret = H5Fclose_wrap (file1); - ret = H5Fclose_wrap (file2); - } - - - // Help function for creating a new file - public static int H5Fcreate_wrap (String name, int flags, - int create_id, int access_id) - { - int file_id = -1; // file identifier - try - { - // Create a new file using default file properties. - file_id = H5.H5Fcreate (name, flags, create_id, access_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("Copy.H5Fcreate_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("Copy.H5Fcreate_wrap() with other Exception: " - + e.getMessage()); - } - return file_id; - } - - - // Help function for opening an existing file - public static int H5Fopen_wrap (String name, int flags, int access_id) - { - int file_id = -1; // file identifier - try - { - // Create a new file using default file properties. - file_id = H5.H5Fopen (name, flags, access_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("Copy.H5Fopen_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("Copy.H5Fopen_wrap() with other Exception: " - + e.getMessage()); - } - return file_id; - } - - - // Help function for opening an existing dataset - public static int H5Dopen_wrap (int loc_id, String name) - { - int dataset_id = -1; // dataset identifier - - try - { - // Opening an existing dataset - dataset_id = H5.H5Dopen (loc_id, name); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("Copy.H5Dopen_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("Copy.H5Dopen_wrap() with other Exception: " - + e.getMessage()); - } - return dataset_id; - } - - - // Help function for creating a new simple dataspace and opening it - // for access - public static int H5Screate_simple_wrap (int rank, long dims[], - long maxdims[]) - { - int dataspace_id = -1; // dataspace identifier - - try - { - // Create the data space for the dataset. - dataspace_id = H5.H5Screate_simple (rank, dims, maxdims); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("Copy.H5Screate_simple_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("Copy.H5Screate_simple_wrap() with other Exception: " - + e.getMessage()); - } - return dataspace_id; - } - - - // Help function for getting an identifier for a copy of - // the dataspace for a dataset - public static int H5Dget_space_wrap (int dataset_id) - { - int dataspace_id = -1; - - try - { - // Returning an identifier for a copy of the dataspace for a dataset - dataspace_id = H5.H5Dget_space (dataset_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("Copy.H5Dget_space_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("Copy.H5Dget_space_wrap() with other Exception: " - + e.getMessage()); - } - return dataspace_id; - } - - - // Help function for selecting array elements to be included in - // the selection for the space_id dataspace. - public static int H5Sselect_elements_wrap (int space_id, int op, - int num_elements, - long coord2D[][]) - { - int status = -1; - - try - { - status = H5.H5Sselect_elements (space_id, op, num_elements, - coord2D); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("Copy.H5Sselect_elements_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("Copy.H5Sselect_elements_wrap() with other Exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for creating a new dataspace which is an exact - // copy of the dataspace identified by space_id. - public static int H5Scopy_wrap (int space_id) - { - int dataspace_id = -1; - - try - { - dataspace_id = H5.H5Scopy(space_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println ("Copy.H5Scopy_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println ("Copy.H5Scopy_wrap() with other Exception: " - + e.getMessage()); - } - return dataspace_id; - } - - - // Help function for creating a dataset - public static int H5Dcreate_wrap (int loc_id, String name, int type_id, - int space_id, int create_plist_id) - { - int dataset_id = -1; // dataset identifier - - try - { - // Create the dataset - dataset_id = H5.H5Dcreate (loc_id, name, type_id, space_id, - create_plist_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("Copy.H5Dcreate_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("Copy.H5Dcreate_wrap() with other Exception: " - + e.getMessage()); - } - return dataset_id; - } - - - // Help function for writing the dataset - public static int H5Dwrite_wrap (int dataset_id, int mem_type_id, - int mem_space_id, int file_space_id, - int xfer_plist_id, Object buf) - { - int status = -1; - - try - { - // Write the dataset. - status = H5.H5Dwrite (dataset_id, mem_type_id, mem_space_id, - file_space_id, xfer_plist_id, buf); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("Copy.H5Dwrite_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("Copy.H5Dwrite_wrap() with other exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for reading the dataset - public static int H5Dread_wrap (int dataset_id, int mem_type_id, - int mem_space_id, int file_space_id, - int xfer_plist_id, Object obj) - { - int status = -1; - - try - { - // Read the dataset. - status = H5.H5Dread (dataset_id, mem_type_id, mem_space_id, - file_space_id, xfer_plist_id, obj); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("Copy.H5Dread_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("Copy.H5Dread_wrap() with other exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for terminating access to the data space. - public static int H5Sclose_wrap (int dataspace_id) - { - int status = -1; - - try - { - // Terminate access to the data space. - status = H5.H5Sclose (dataspace_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("Copy.H5Sclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("Copy.H5Sclose_wrap() with other exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for ending access to the dataset and releasing - // resources used by it. - public static int H5Dclose_wrap (int dataset_id) - { - int status = -1; - - try - { - // End access to the dataset and release resources used by it. - status = H5.H5Dclose (dataset_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("Copy.H5Dclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("Copy.H5Dclose_wrap() with other exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for terminating access to the file. - public static int H5Fclose_wrap (int file_id) - { - int status = -1; - - try - { - // Terminate access to the file. - status = H5.H5Fclose (file_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("Copy.H5Fclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("Copy.H5Fclose_wrap() with other exception: " - + e.getMessage()); - } - return status; - } -} diff --git a/doc/html/Tutor/examples/java/CreateAttribute.java b/doc/html/Tutor/examples/java/CreateAttribute.java deleted file mode 100644 index c926422..0000000 --- a/doc/html/Tutor/examples/java/CreateAttribute.java +++ /dev/null @@ -1,302 +0,0 @@ -/****************************************************************** - * CreateAttribute.java (for HDF5 tutorial lesson 7) - * - * -- Creating and Writing a dataset attribute - * (a java conversion from h5_crtatt.c) - * - ******************************************************************/ - -import ncsa.hdf.hdf5lib.*; -import ncsa.hdf.hdf5lib.exceptions.*; - -public class CreateAttribute -{ - public static void main(String []argv) - { - final String FILE = "dset.h5"; - int file_id = -1; // file identifier - int dataset_id = -1; // dataset identifier - int attribute_id = -1; - int dataspace_id = -1; // dataspace identifier - long[] dims = new long[1]; - int[] attr_data = new int[2]; - int status = -1; - - // Initialize the attribute data. - attr_data[0] = 100; - attr_data[1] = 200; - - // Open an existing file. - file_id = H5Fopen_wrap (FILE, HDF5Constants.H5F_ACC_RDWR, - HDF5Constants.H5P_DEFAULT); - - // Open an existing dataset. - dataset_id = H5Dopen_wrap (file_id, "/dset"); - - // Create the data space for the attribute. - dims[0] = 2; - dataspace_id = H5Screate_simple_wrap (1, dims, null); - - // Create a dataset attribute. - attribute_id = H5Acreate_wrap - (dataset_id, "attr", - H5.J2C (HDF5CDataTypes.JH5T_STD_I32BE), - dataspace_id, HDF5Constants.H5P_DEFAULT); - - // Write the attribute data. - status = H5Awrite_wrap - (attribute_id, - H5.J2C (HDF5CDataTypes.JH5T_NATIVE_INT), - attr_data); - - // Close the attribute. - status = H5Aclose_wrap (attribute_id); - - // Close the dataspace. - status = H5Sclose_wrap (dataspace_id); - - // Close to the dataset. - status = H5Dclose_wrap (dataset_id); - - // Close the file. - status = H5Fclose_wrap (file_id); - } - - - // Help function for opening an existing file - public static int H5Fopen_wrap (String name, int flags, int access_id) - { - int file_id = -1; // file identifier - try - { - // Create a new file using default file properties. - file_id = H5.H5Fopen (name, flags, access_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateAttribute.H5Fopen_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateAttribute.H5Fopen_wrap() with other Exception: " - + e.getMessage()); - } - return file_id; - } - - - // Help function for opening an existing dataset - public static int H5Dopen_wrap (int loc_id, String name) - { - int dataset_id = -1; // dataset identifier - - try - { - // Opening an existing dataset - dataset_id = H5.H5Dopen (loc_id, name); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateAttribute.H5Dopen_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateAttribute.H5Dopen_wrap() with other Exception: " - + e.getMessage()); - } - return dataset_id; - } - - - // Create the data space for the attribute. - public static int H5Screate_simple_wrap (int rank, long dims[], - long maxdims[]) - { - int dataspace_id = -1; // dataspace identifier - - try - { - // Create the data space for the dataset. - dataspace_id = H5.H5Screate_simple (rank, dims, maxdims); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateAttribute.H5Screate_simple_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - - } - catch (Exception e) - { - System.out.println - ("CreateAttribute.H5Screate_simple_wrap() with other Exception: " - + e.getMessage()); - } - return dataspace_id; - } - - - // Help function for creating a dataset attribute. - public static int H5Acreate_wrap (int loc_id, String name, int type_id, - int space_id, int create_plist) - { - int attribute_id = -1; // attribute identifier - - try - { - // Create the dataset - attribute_id = H5.H5Acreate (loc_id, name, type_id, space_id, - create_plist); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateAttribute.H5Acreate_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateAttribute.H5Acreate_wrap() with other Exception: " - + e.getMessage()); - } - return attribute_id; - } - - - // Help function for writing the attribute data. - public static int H5Awrite_wrap (int attr_id, int mem_type_id, - Object buf) - { - int status = -1; - - try - { - // Write the attribute data. - status = H5.H5Awrite (attr_id, mem_type_id, buf); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateAttribute.H5Awrite_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateAttribute.H5Awrite_wrap() with other exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for closing the attribute - public static int H5Aclose_wrap (int attribute_id) - { - int status = -1; - - try - { - // Close the dataset - status = H5.H5Aclose (attribute_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateAttribute.H5Aclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateAttribute.H5Aclose_wrap() with other exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for closing the dataset - public static int H5Dclose_wrap (int dataset_id) - { - int status = -1; - - try - { - // Close the dataset - status = H5.H5Dclose (dataset_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateAttribute.H5Dclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateAttribute.H5Dclose_wrap() with other exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for closing the dataspace - public static int H5Sclose_wrap (int dataspace_id) - { - int status = -1; - - try - { - // Terminate access to the data space. - status = H5.H5Sclose (dataspace_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateAttribute.H5Sclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateAttribute.H5Sclose_wrap() with other exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for terminating access to the file. - public static int H5Fclose_wrap (int file_id) - { - int status = -1; - - try - { - // Terminate access to the file. - status = H5.H5Fclose (file_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateAttribute.H5Fclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateAttribute.H5Fclose_wrap() with other exception: " - + e.getMessage()); - } - return status; - } -} diff --git a/doc/html/Tutor/examples/java/CreateDataset.java b/doc/html/Tutor/examples/java/CreateDataset.java deleted file mode 100644 index 05f3f6b..0000000 --- a/doc/html/Tutor/examples/java/CreateDataset.java +++ /dev/null @@ -1,210 +0,0 @@ -/****************************************************************** - * CreateDataset.java (for HDF5 tutorial lesson 5) - * - * -- Creating a HDF5 Dataset - * (a java conversion from h5_crtdat.c) - * - ******************************************************************/ - -import ncsa.hdf.hdf5lib.*; -import ncsa.hdf.hdf5lib.exceptions.*; - -public class CreateDataset -{ - public static void main(String []argv) - { - final String FILE = "dset.h5"; - int file_id = -1; // file identifier - int dataset_id = -1; // dataset identifier - int dataspace_id = -1; // dataspace identifier - long[] dims = new long[2]; - int status = -1; - - // Create a new file using default properties. - file_id = H5Fcreate_wrap (FILE, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT); - - // Create the data space for the dataset. - dims[0] = 4; - dims[1] = 6; - dataspace_id = H5Screate_simple_wrap (2, dims, null); - - // Create the dataset. - dataset_id = - H5Dcreate_wrap (file_id, "/dset", - H5.J2C (HDF5CDataTypes.JH5T_STD_I32BE), - dataspace_id, HDF5Constants.H5P_DEFAULT); - - // End access to the dataset and release resources used by it. - status = H5Dclose_wrap (dataset_id); - - // Terminate access to the data space. - status = H5Sclose_wrap (dataspace_id); - - // Close the file. - status = H5Fclose_wrap (file_id); - } - - - // Help function for creating a new file - public static int H5Fcreate_wrap (String name, int flags, - int create_id, int access_id) - { - int file_id = -1; // file identifier - try - { - // Create a new file using default file properties. - file_id = H5.H5Fcreate (name, flags, create_id, access_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateDataset.H5Fcreate_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateDataset.H5Fcreate_wrap() with other Exception: " - + e.getMessage()); - } - return file_id; - } - - - // Help function for creating a new simple dataspace and opening it - // for access - public static int H5Screate_simple_wrap (int rank, long dims[], - long maxdims[]) - { - int dataspace_id = -1; // dataspace identifier - - try - { - // Create the data space for the dataset. - dataspace_id = H5.H5Screate_simple (rank, dims, maxdims); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateDataset.H5Screate_simple_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateDataset.H5Screate_simple_wrap() with other Exception: " - + e.getMessage()); - } - return dataspace_id; - } - - - // Help function for creating a dataset - public static int H5Dcreate_wrap (int loc_id, String name, int type_id, - int space_id, int create_plist_id) - { - int dataset_id = -1; // dataset identifier - - try - { - // Create the dataset - dataset_id = H5.H5Dcreate (loc_id, name, type_id, space_id, - create_plist_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateDataset.H5Dcreate_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateDataset.H5Dcreate_wrap() with other Exception: " - + e.getMessage()); - } - return dataset_id; - } - - - // Help function for ending access to the dataset and releasing - // resources used by it. - public static int H5Dclose_wrap (int dataset_id) - { - int status = -1; - - try - { - // End access to the dataset and release resources used by it. - status = H5.H5Dclose (dataset_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateDataset.H5Dclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateDataset.H5Dclose_wrap() with other exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for terminating access to the data space. - public static int H5Sclose_wrap (int dataspace_id) - { - int status = -1; - - try - { - // Terminate access to the data space. - status = H5.H5Sclose (dataspace_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateDataset.H5Sclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateDataset.H5Sclose_wrap() with other exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for terminating access to the file. - public static int H5Fclose_wrap (int file_id) - { - int status = -1; - - try - { - // Terminate access to the file. - status = H5.H5Fclose (file_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateDataset.H5Fclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateDataset.H5Fclose_wrap() with other exception: " - + e.getMessage()); - } - return status; - } -} - diff --git a/doc/html/Tutor/examples/java/CreateFile.java b/doc/html/Tutor/examples/java/CreateFile.java deleted file mode 100644 index 550b263..0000000 --- a/doc/html/Tutor/examples/java/CreateFile.java +++ /dev/null @@ -1,83 +0,0 @@ -/****************************************************************** - * CreateFile.java (for HDF5 tutorial lesson 4) - * - * -- Creating a HDF5 file - * (a java conversion from h5_crtfile.c) - * - ******************************************************************/ - -import ncsa.hdf.hdf5lib.*; -import ncsa.hdf.hdf5lib.exceptions.*; - -public class CreateFile -{ - public static void main(String []argv) - { - final String FILE = "file.h5"; - int file_id = -1; // file identifier - int status = -1; - - file_id = H5Fcreate_wrap (FILE, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT); - status = H5Fclose_wrap (file_id); - } - - - // Help function for creating a new file - public static int H5Fcreate_wrap (String name, int flags, - int create_id, int access_id) - { - int file_id = -1; // file identifier - try - { - // Create a new file using default file properties. - file_id = H5.H5Fcreate (name, flags, create_id, access_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateFile.H5Fcreate_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateFile.H5Fcreate_wrap() with other Exception: " - + e.getMessage()); - } - - System.out.println ("\nThe file name is: " + name); - System.out.println ("The file ID is: " + file_id); - - return file_id; - } - - - // Help function for terminating access to the file. - public static int H5Fclose_wrap (int file_id) - { - int status = -1; - - try - { - // Terminate access to the file. - status = H5.H5Fclose (file_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateFile.H5Fclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateFile.H5Fclose_wrap() with other exception: " - + e.getMessage()); - } - return status; - } -} - - diff --git a/doc/html/Tutor/examples/java/CreateFileInput.java b/doc/html/Tutor/examples/java/CreateFileInput.java deleted file mode 100644 index 0e7fd4d..0000000 --- a/doc/html/Tutor/examples/java/CreateFileInput.java +++ /dev/null @@ -1,118 +0,0 @@ -/****************************************************************** - * CreateFileInput.java (for HDF5 tutorial Lesson 4) - * - * -- Creating a HDF5 file - * (another java conversion from h5_crtfile.c, give user two options: - * one for library path and one for file name, if user chooses - * nothing, then the default file name is used.) - * - ******************************************************************/ - -import java.lang.System; -import java.util.*; -import ncsa.hdf.hdf5lib.*; -import ncsa.hdf.hdf5lib.exceptions.*; - -public class CreateFileInput -{ - // The run command should be like: - // "./runCreateFileInput -l /usr/lib/hdf5.dll -f ./open.h5" - public static void main(String []argv) - { - int file_id = -1; // file identifier - int status = -1; - String libpath = null; - String filename = null; - - for (int i = 0; i < argv.length; i++) - { - if ("-l".equalsIgnoreCase (argv[i])) - libpath = argv[++i]; - - if ("-f".equalsIgnoreCase (argv[i])) - filename = argv[++i]; - } - - if (libpath != null) - { - Properties pros = System.getProperties (); - pros.put (H5.H5PATH_PROPERTY_KEY, libpath); - - /* - this function call could be used in Java 1.2 - System.setProperty (H5.H5PATH_PROPERTY_KEY, libpath); - */ - } - - if (filename == null) - { - filename = "file.h5"; // if no input file name, use the default name - } - - file_id = H5Fcreate_wrap (filename, - HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT); - status = H5Fclose_wrap (filename, file_id); - } - - - // Help function for creating a new file - public static int H5Fcreate_wrap (String name, int flags, - int create_id, int access_id) - { - int file_id = -1; // file identifier - try - { - // Create a new file using default file properties. - file_id = H5.H5Fcreate (name, flags, create_id, access_id); - - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateFileInput.H5Fcreate_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateFileInput.H5Fcreate_wrap() with other Exception: " - + e.getMessage()); - } - - System.out.println ("\nThe file name is: " + name); - System.out.println ("The file ID is: " + file_id); - - return file_id; - } - - - // Help function for terminating access to the file. - public static int H5Fclose_wrap (String name, int file_id) - { - int status = -1; - - try - { - // Terminate access to the file. - status = H5.H5Fclose (file_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateFileInput.H5Fclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateFileInput.H5Fclose_wrap() with other exception: " - + e.getMessage()); - } - - return status; - } -} - - diff --git a/doc/html/Tutor/examples/java/CreateGroup.java b/doc/html/Tutor/examples/java/CreateGroup.java deleted file mode 100644 index 48ef4af..0000000 --- a/doc/html/Tutor/examples/java/CreateGroup.java +++ /dev/null @@ -1,139 +0,0 @@ -/****************************************************************** - * CreateGroup.java (for HDF5 tutorial lesson 8) - * - * -- Creating and closing a group - * (a java conversion from h5_crtgrp.c) - * - ******************************************************************/ - -import ncsa.hdf.hdf5lib.*; -import ncsa.hdf.hdf5lib.exceptions.*; - -public class CreateGroup -{ - public static void main(String []argv) - { - final String FILE = "group.h5"; - int file_id = -1; // file identifier - int group_id = -1; // group identifier - int status = -1; - - // Create a new file using default properties. - file_id = H5Fcreate_wrap (FILE, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT); - - // Create a group named "/MyGroup" in the file. - group_id = H5Gcreate_wrap (file_id, "/MyGroup", 0); - - // Close the group. - status = H5Gclose_wrap (group_id); - - // Close the file. - status = H5Fclose_wrap (file_id); - } - - - // Help function for creating a new file - public static int H5Fcreate_wrap (String name, int flags, - int create_id, int access_id) - { - int file_id = -1; // file identifier - try - { - // Create a new file using default file properties. - file_id = H5.H5Fcreate (name, flags, create_id, access_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateGroup.H5Fcreate_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateGroup.H5Fcreate_wrap() with other Exception: " - + e.getMessage()); - } - return file_id; - } - - - // Help function for creating a group named "/MyGroup" in the file. - public static int H5Gcreate_wrap (int loc_id, String name, int size_hint) - { - int group_id = -1; // group identifier - try - { - // Create a group - group_id = H5.H5Gcreate (loc_id, name, size_hint); - - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateGroup.H5Gcreate_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateGroup.H5Gcreate_wrap() with other Exception: " - + e.getMessage()); - } - return group_id; - } - - - // Help function for closing the group - public static int H5Gclose_wrap (int group_id) - { - int status = -1; - - try - { - // Close the group - status = H5.H5Gclose (group_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateGroup.H5Gclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateGroup.H5Gclose_wrap() with other exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for terminating access to the file. - public static int H5Fclose_wrap (int file_id) - { - int status = -1; - - try - { - // Terminate access to the file. - status = H5.H5Fclose (file_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateGroup.H5Fclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateGroup.H5Fclose_wrap() with other exception: " - + e.getMessage()); - } - return status; - } -} diff --git a/doc/html/Tutor/examples/java/CreateGroupAR.java b/doc/html/Tutor/examples/java/CreateGroupAR.java deleted file mode 100644 index 672f1d1..0000000 --- a/doc/html/Tutor/examples/java/CreateGroupAR.java +++ /dev/null @@ -1,152 +0,0 @@ -/****************************************************************** - * CreateGroupAR.java (for HDF5 tutorial lesson 9) - * - * -- Creating groups using absolute and relative names. - * (a java conversion from h5_crtgrpar.c) - * - ******************************************************************/ - -import ncsa.hdf.hdf5lib.*; -import ncsa.hdf.hdf5lib.exceptions.*; - -public class CreateGroupAR -{ - public static void main(String []argv) - { - final String FILE = "groups.h5"; - int file_id = -1; // file identifier - int group1_id = -1; // group identifier - int group2_id = -1; - int group3_id = -1; - - int status = -1; - - // Create a new file using default properties. - file_id = H5Fcreate_wrap (FILE, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT); - - // Create group "MyGroup" in the root group using absolute name. - group1_id = H5Gcreate_wrap (file_id, "/MyGroup", 0); - - - // Create group "Group_A" in group "MyGroup" using absolute name. - group2_id = H5Gcreate_wrap (file_id, "/MyGroup/Group_A", 0); - - // Create group "Group_B" in group "MyGroup" using relative name. - group3_id = H5Gcreate_wrap (group1_id, "Group_B", 0); - - // Close groups. - status = H5Gclose_wrap (group1_id); - status = H5Gclose_wrap (group2_id); - status = H5Gclose_wrap (group3_id); - - // Close the file. - status = H5Fclose_wrap (file_id); - } - - - // Help function for creating a new file - public static int H5Fcreate_wrap (String name, int flags, - int create_id, int access_id) - { - int file_id = -1; // file identifier - try - { - // Create a new file using default file properties. - file_id = H5.H5Fcreate (name, flags, create_id, access_id); - - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateGroupAR.H5Fcreate_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateGroupAR.H5Fcreate_wrap() with other Exception: " - + e.getMessage()); - } - return file_id; - } - - - // Help function for creating a group named "/MyGroup" in the file. - public static int H5Gcreate_wrap (int loc_id, String name, int size_hint) - { - int group_id = -1; // group identifier - try - { - // Create a group - group_id = H5.H5Gcreate (loc_id, name, size_hint); - - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateGroupAR.H5Gcreate_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateGroupAR.H5Gcreate_wrap() with other Exception: " - + e.getMessage()); - } - return group_id; - } - - - // Help function for closing the group - public static int H5Gclose_wrap (int group_id) - { - int status = -1; - - try - { - // Close the group - status = H5.H5Gclose (group_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateGroupAR.H5Gclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateGroupAR.H5Gclose_wrap() with other exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for terminating access to the file. - public static int H5Fclose_wrap (int file_id) - { - int status = -1; - - try - { - // Terminate access to the file. - status = H5.H5Fclose (file_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateGroupAR.H5Fclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateGroupAR.H5Fclose_wrap() with other exception: " - + e.getMessage()); - } - return status; - } -} diff --git a/doc/html/Tutor/examples/java/CreateGroupDataset.java b/doc/html/Tutor/examples/java/CreateGroupDataset.java deleted file mode 100644 index f0fbeaa..0000000 --- a/doc/html/Tutor/examples/java/CreateGroupDataset.java +++ /dev/null @@ -1,340 +0,0 @@ -/****************************************************************** - * CreateGroupDataset.java (for HDF5 tutorial lesson 10) - * - * -- Creating a dataset in a particular group - * (a java conversion from h5_crtgrpd.c) - * - ******************************************************************/ - -import ncsa.hdf.hdf5lib.*; -import ncsa.hdf.hdf5lib.exceptions.*; - -public class CreateGroupDataset -{ - public static void main(String []argv) - { - final String FILE = "groups.h5"; - int file_id = -1; // file identifier - int group_id = -1; // group identifier - int dataset_id; - int dataspace_id; - int status = -1; - - long[] dims = new long[2]; - int[][] dset1_data = new int[3][3]; - int[][] dset2_data = new int[2][10]; - int i = -1, j = -1; - - // Initialize the first dataset. - for (i = 0; i < 3; i++) - for (j = 0; j < 3; j++) - dset1_data[i][j] = j + 1; - - // Initialize the second dataset. - for (i = 0; i < 2; i++) - for (j = 0; j < 10; j++) - dset2_data[i][j] = j + 1; - - // Open an existing file. - file_id = H5Fopen_wrap (FILE, HDF5Constants.H5F_ACC_RDWR, - HDF5Constants.H5P_DEFAULT); - - // Create the data space for the first dataset. - dims[0] = 3; - dims[1] = 3; - dataspace_id = H5Screate_simple_wrap (2, dims, null); - - // Create a dataset in group "MyGroup". - dataset_id = - H5Dcreate_wrap (file_id, "/MyGroup/dset1", - H5.J2C (HDF5CDataTypes.JH5T_STD_I32BE), - dataspace_id, HDF5Constants.H5P_DEFAULT); - - // Write the first dataset. - status = H5Dwrite_wrap - (dataset_id, - H5.J2C (HDF5CDataTypes.JH5T_NATIVE_INT), - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, dset1_data); - - // Close the data space for the first dataset. - status = H5Sclose_wrap (dataspace_id); - - // Close the first dataset. - status = H5Dclose_wrap (dataset_id); - - // Open an existing group of the specified file. - group_id = H5Gopen_wrap (file_id, "/MyGroup/Group_A"); - - // Create the data space for the second dataset. - dims[0] = 2; - dims[1] = 10; - dataspace_id = H5Screate_simple_wrap (2, dims, null); - - // Create the second dataset in group "Group_A". - dataset_id = - H5Dcreate_wrap (group_id, "dset2", - H5.J2C (HDF5CDataTypes.JH5T_STD_I32BE), - dataspace_id, HDF5Constants.H5P_DEFAULT); - - // Write the second dataset. - status = H5Dwrite_wrap - (dataset_id, - H5.J2C (HDF5CDataTypes.JH5T_NATIVE_INT), - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, dset2_data); - - // Close the data space for the second dataset. - status = H5Sclose_wrap (dataspace_id); - - // Close the second dataset - status = H5Dclose_wrap (dataset_id); - - // Close the group. - status = H5Gclose_wrap (group_id); - - // Close the file. - status = H5Fclose_wrap (file_id); - } - - - // Help function for opening an existing file - public static int H5Fopen_wrap (String name, int flags, int access_id) - { - int file_id = -1; // file identifier - try - { - // Create a new file using default file properties. - file_id = H5.H5Fopen (name, flags, access_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateGroupDataset.H5Fopen_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateGroupDataset.H5Fopen_wrap() with other Exception: " - + e.getMessage()); - } - return file_id; - } - - - // Help function for creating a new simple dataspace and opening it - // for access - public static int H5Screate_simple_wrap (int rank, long dims[], - long maxdims[]) - { - int dataspace_id = -1; // dataspace identifier - - try - { - // Create the data space for the dataset. - dataspace_id = H5.H5Screate_simple (rank, dims, maxdims); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateGroupDataset.H5Screate_simple_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateGroupDataset.H5Screate_simple_wrap() with other Exception: " - + e.getMessage()); - } - return dataspace_id; - } - - - // Help function for creating a dataset - public static int H5Dcreate_wrap (int loc_id, String name, int type_id, - int space_id, int create_plist_id) - { - int dataset_id = -1; // dataset identifier - - try - { - // Create the dataset - dataset_id = H5.H5Dcreate (loc_id, name, type_id, space_id, - create_plist_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateGroupDataset.H5Dcreate_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateGroupDataset.H5Dcreate_wrap() with other Exception: " - + e.getMessage()); - } - return dataset_id; - } - - - // Help function for writing the dataset - public static int H5Dwrite_wrap (int dataset_id, int mem_type_id, - int mem_space_id, int file_space_id, - int xfer_plist_id, Object buf) - { - int status = -1; - - try - { - // Write the dataset. - status = H5.H5Dwrite (dataset_id, mem_type_id, mem_space_id, - file_space_id, xfer_plist_id, buf); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateGroupDataset.H5Dwrite_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateGroupDataset.H5Dwrite_wrap() with other exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for terminating access to the data space. - public static int H5Sclose_wrap (int dataspace_id) - { - int status = -1; - - try - { - // Terminate access to the data space. - status = H5.H5Sclose (dataspace_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateGroupDataset.H5Sclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateGroupDataset.H5Sclose_wrap() with other exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for ending access to the dataset and releasing - // resources used by it. - public static int H5Dclose_wrap (int dataset_id) - { - int status = -1; - - try - { - // End access to the dataset and release resources used by it. - status = H5.H5Dclose (dataset_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateGroupDataset.H5Dclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateGroupDataset.H5Dclose_wrap() with other exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for opening a group - public static int H5Gopen_wrap (int loc_id, String name) - { - int group_id = -1; // group identifier - try - { - // Create a group - group_id = H5.H5Gopen (loc_id, name); - - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateGroupDataset.H5Gopen_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateGroupDataset.H5Gopen_wrap() with other Exception: " - + e.getMessage()); - } - return group_id; - } - - - // Help function for closing the group - public static int H5Gclose_wrap (int group_id) - { - int status = -1; - - try - { - // Close the group - status = H5.H5Gclose (group_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateGroupDataset.H5Gclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateGroupDataset.H5Gclose_wrap() with other exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for terminating access to the file. - public static int H5Fclose_wrap (int file_id) - { - int status = -1; - - try - { - // Terminate access to the file. - status = H5.H5Fclose (file_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("CreateGroupDataset.H5Fclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("CreateGroupDataset.H5Fclose_wrap() with other exception: " - + e.getMessage()); - } - return status; - } -} diff --git a/doc/html/Tutor/examples/java/DatasetRdWt.java b/doc/html/Tutor/examples/java/DatasetRdWt.java deleted file mode 100644 index 4c26d0f..0000000 --- a/doc/html/Tutor/examples/java/DatasetRdWt.java +++ /dev/null @@ -1,213 +0,0 @@ -/****************************************************************** - * DatasetRdWt.java (for HDF5 tutorial lesson 6) - * - * -- Reading and Writing an existing Dataset - * (a java conversion from h5_rdwt.c) - * - ******************************************************************/ - -import ncsa.hdf.hdf5lib.*; -import ncsa.hdf.hdf5lib.exceptions.*; - -public class DatasetRdWt -{ - public static void main(String []argv) - { - final String FILE = "dset.h5"; - int file_id = -1; // file identifier - int dataset_id = -1; // dataset identifier - int status = -1; - int[][] dset_data = new int[4][6]; - - // Initialize the dataset. - for (int i = 0; i < 4; i++) - for (int j = 0; j < 6; j++) - dset_data[i][j] = i * 6 + j + 1; - - // Open an existing file - file_id = H5Fopen_wrap (FILE, HDF5Constants.H5F_ACC_RDWR, - HDF5Constants.H5P_DEFAULT); - - // Open an existing dataset. - dataset_id = H5Dopen_wrap (file_id, "/dset"); - - // Write the dataset. - status = H5Dwrite_wrap - (dataset_id, H5.J2C (HDF5CDataTypes.JH5T_NATIVE_INT), - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, dset_data); - - status = H5Dread_wrap - (dataset_id, H5.J2C (HDF5CDataTypes.JH5T_NATIVE_INT), - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, dset_data); - - // Close the dataset. - status = H5Dclose_wrap (dataset_id); - - // Close the file. - status = H5Fclose_wrap (file_id); - } - - - // Help function for opening an existing file - public static int H5Fopen_wrap (String name, int flags, int access_id) - { - int file_id = -1; // file identifier - try - { - // Create a new file using default file properties. - file_id = H5.H5Fopen (name, flags, access_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("DatasetRdWt.H5Fopen_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("DatasetRdWt.H5Fopen_wrap() with other Exception: " - + e.getMessage()); - } - return file_id; - } - - - // Help function for opening an existing dataset - public static int H5Dopen_wrap (int loc_id, String name) - { - int dataset_id = -1; // dataset identifier - - try - { - // Opening an existing dataset - dataset_id = H5.H5Dopen (loc_id, name); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("DatasetRdWt.H5Dopen_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("DatasetRdWt.H5Dopen_wrap() with other Exception: " - + e.getMessage()); - } - return dataset_id; - } - - - // Help function for writing the dataset - public static int H5Dwrite_wrap (int dataset_id, int mem_type_id, - int mem_space_id, int file_space_id, - int xfer_plist_id, Object buf) - { - int status = -1; - - try - { - // Write the dataset. - status = H5.H5Dwrite (dataset_id, mem_type_id, mem_space_id, - file_space_id, xfer_plist_id, buf); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("DatasetRdWt.H5Dwrite_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("DatasetRdWt.H5Dwrite_wrap() with other exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for reading the dataset - public static int H5Dread_wrap (int dataset_id, int mem_type_id, - int mem_space_id, int file_space_id, - int xfer_plist_id, Object obj) - { - int status = -1; - - try - { - // Read the dataset. - status = H5.H5Dread (dataset_id, mem_type_id, mem_space_id, - file_space_id, xfer_plist_id, obj); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("DatasetRdWt.H5Dread_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("DatasetRdWt.H5Dread_wrap() with other exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for ending access to the dataset and releasing - // resources used by it. - public static int H5Dclose_wrap (int dataset_id) - { - int status = -1; - - try - { - // End access to the dataset and release resources used by it. - status = H5.H5Dclose (dataset_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("DatasetRdWt.H5Dclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("DatasetRdWt.H5Dclose_wrap() with other exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for terminating access to the file. - public static int H5Fclose_wrap (int file_id) - { - int status = -1; - - try - { - // Terminate access to the file. - status = H5.H5Fclose (file_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("DatasetRdWt.H5Fclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("DatasetRdWt.H5Fclose_wrap() with other exception: " - + e.getMessage()); - } - return status; - } -} diff --git a/doc/html/Tutor/examples/java/Dependencies b/doc/html/Tutor/examples/java/Dependencies deleted file mode 100644 index e69de29..0000000 --- a/doc/html/Tutor/examples/java/Dependencies +++ /dev/null diff --git a/doc/html/Tutor/examples/java/HyperSlab.java b/doc/html/Tutor/examples/java/HyperSlab.java deleted file mode 100644 index 5f8818d..0000000 --- a/doc/html/Tutor/examples/java/HyperSlab.java +++ /dev/null @@ -1,590 +0,0 @@ -/****************************************************************** - * HyperSlab.java (for HDF5 tutorial lesson 12) - * - * -- Writing and reading a hyperslab - * (a java conversion from h5_hyperslab.c) - * - ******************************************************************/ - -import ncsa.hdf.hdf5lib.*; -import ncsa.hdf.hdf5lib.exceptions.*; - -public class HyperSlab -{ - public static void main (String []argv) - { - final String FILE = "sds.h5"; - final String DATASETNAME = "IntArray"; - final int NX_SUB = 3; /* hyperslab dimensions */ - final int NY_SUB = 4; - final int NX = 7; /* output buffer dimensions */ - final int NY = 7; - final int NZ = 3; - final int RANK = 2; - final int RANK_OUT = 3; - final int X = 5; /* dataset dimensions */ - final int Y = 6; - - long[] dimsf = new long[2]; /* dataset dimensions */ - int[][] data = new int[X][Y]; /* data to write */ - - /* - * Data and output buffer initialization. - */ - int file, dataset; /* handles */ - int dataspace; - int memspace; - long[] dimsm = new long[3]; /* memory space dimensions */ - long[] dims_out = new long[2]; /* dataset dimensions */ - int status; - - int[][][] data_out = new int[NX][NY][NZ]; /* output buffer */ - - long[] count = new long[2]; /* size of the hyperslab in the file */ - long[] offset = new long[2]; /* hyperslab offset in the file */ - long[] count_out = new long[3]; /* size of the hyperslab in memory */ - long[] offset_out = new long[3]; /* hyperslab offset in memory */ - int i, j, k, status_n, rank; - - /********************************************************* - This writes data to the HDF5 file. - *********************************************************/ - - /* - * Data and output buffer initialization. - */ - for (j = 0; j < X; j++) - { - for (i = 0; i < Y; i++) - data[j][i] = i + j; - } - /* - * 0 1 2 3 4 5 - * 1 2 3 4 5 6 - * 2 3 4 5 6 7 - * 3 4 5 6 7 8 - * 4 5 6 7 8 9 - */ - - /* - * Create a new file using H5F_ACC_TRUNC access, - * the default file creation properties, and the default file - * access properties. - */ - file = H5Fcreate_wrap (FILE, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT); - - /* - * Describe the size of the array and create the data space for fixed - * size dataset. - */ - dimsf[0] = X; - dimsf[1] = Y; - dataspace = H5Screate_simple_wrap (RANK, dimsf, null); - - /* - * Create a new dataset within the file using defined dataspace and - * default dataset creation properties. - */ - dataset = H5Dcreate_wrap - (file, DATASETNAME, H5.J2C (HDF5CDataTypes.JH5T_STD_I32BE), - dataspace, HDF5Constants.H5P_DEFAULT); - - /* - * Write the data to the dataset using default transfer properties. - */ - status = H5Dwrite_wrap - (dataset, H5.J2C (HDF5CDataTypes.JH5T_NATIVE_INT), - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, data); - - /* - * Close/release resources. - */ - H5Sclose_wrap (dataspace); - H5Dclose_wrap (dataset); - H5Fclose_wrap (file); - - /************************************************************* - - This reads the hyperslab from the sds.h5 file just - created, into a 2-dimensional plane of the 3-dimensional - array. - - ************************************************************/ - - for (j = 0; j < NX; j++) - { - for (i = 0; i < NY; i++) - { - for (k = 0; k < NZ ; k++) - data_out[j][i][k] = 0; - } - } - - /* - * Open the file and the dataset. - */ - file = H5Fopen_wrap (FILE, HDF5Constants.H5F_ACC_RDONLY, - HDF5Constants.H5P_DEFAULT); - dataset = H5Dopen_wrap (file, DATASETNAME); - - dataspace = H5Dget_space_wrap (dataset); /* dataspace handle */ - rank = H5Sget_simple_extent_ndims_wrap (dataspace); - status_n = H5Sget_simple_extent_dims_wrap (dataspace, dims_out, null); - - System.out.println ("Rank: " + rank); - System.out.println ("Dimensions: "+ dims_out[0] + " x " + dims_out[1]); - - /* - * Define hyperslab in the dataset. - */ - offset[0] = 1; - offset[1] = 2; - count[0] = NX_SUB; - count[1] = NY_SUB; - status = H5Sselect_hyperslab_wrap (dataspace, - HDF5Constants.H5S_SELECT_SET, - offset, null, count, null); - - /* - * Define the memory dataspace. - */ - dimsm[0] = NX; - dimsm[1] = NY; - dimsm[2] = NZ; - memspace = H5Screate_simple_wrap (RANK_OUT, dimsm, null); - - /* - * Define memory hyperslab. - */ - offset_out[0] = 3; - offset_out[1] = 0; - offset_out[2] = 0; - count_out[0] = NX_SUB; - count_out[1] = NY_SUB; - count_out[2] = 1; - status = H5Sselect_hyperslab_wrap (memspace, - HDF5Constants.H5S_SELECT_SET, - offset_out, null, count_out, null); - - /* - * Read data from hyperslab in the file into the hyperslab in - * memory and display. - */ - status = - H5Dread_wrap (dataset, H5.J2C (HDF5CDataTypes.JH5T_NATIVE_INT), - memspace, dataspace, HDF5Constants.H5P_DEFAULT, - data_out); - - System.out.println ("Data:"); - for (j = 0; j < NX; j++) - { - for (i = 0; i < NY; i++) - System.out.print (data_out[j][i][0]); - System.out.println (); - } - System.out.println (); - - /* - * 0 0 0 0 0 0 0 - * 0 0 0 0 0 0 0 - * 0 0 0 0 0 0 0 - * 3 4 5 6 0 0 0 - * 4 5 6 7 0 0 0 - * 5 6 7 8 0 0 0 - * 0 0 0 0 0 0 0 - */ - - /* - * Close and release resources. - */ - H5Dclose_wrap (dataset); - H5Sclose_wrap (dataspace); - H5Sclose_wrap (memspace); - H5Fclose_wrap (file); - } - - - // Help function for creating a new file - public static int H5Fcreate_wrap (String name, int flags, - int create_id, int access_id) - { - int file_id = -1; // file identifier - try - { - // Create a new file using default file properties. - file_id = H5.H5Fcreate (name, flags, create_id, access_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("HyperSlab.H5Fcreate_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("HyperSlab.H5Fcreate_wrap() with other Exception: " - + e.getMessage()); - } - return file_id; - } - - - // Help function for opening an existing file - public static int H5Fopen_wrap (String name, int flags, int access_id) - { - int file_id = -1; // file identifier - try - { - // Create a new file using default file properties. - file_id = H5.H5Fopen (name, flags, access_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("HyperSlab.H5Fopen_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("HyperSlab.H5Fopen_wrap() with other Exception: " - + e.getMessage()); - } - return file_id; - } - - - // Help function for opening an existing dataset - public static int H5Dopen_wrap (int loc_id, String name) - { - int dataset_id = -1; // dataset identifier - - try - { - // Opening an existing dataset - dataset_id = H5.H5Dopen (loc_id, name); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("HyperSlab.H5Dopen_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("HyperSlab.H5Dopen_wrap() with other Exception: " - + e.getMessage()); - } - return dataset_id; - } - - - // Help function for creating a new simple dataspace and opening it - // for access - public static int H5Screate_simple_wrap (int rank, long dims[], - long maxdims[]) - { - int dataspace_id = -1; // dataspace identifier - - try - { - // Create the data space for the dataset. - dataspace_id = H5.H5Screate_simple (rank, dims, maxdims); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("HyperSlab.H5Screate_simple_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("HyperSlab.H5Screate_simple_wrap() with other Exception: " - + e.getMessage()); - } - return dataspace_id; - } - - - // Help function for getting an identifier for a copy of - // the dataspace for a dataset - public static int H5Dget_space_wrap (int dataset_id) - { - int dataspace_id = -1; - - try - { - // Returning an identifier for a copy of the dataspace for a dataset - dataspace_id = H5.H5Dget_space (dataset_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("HyperSlab.H5Dget_space_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("HyperSlab.H5Dget_space_wrap() with other Exception: " - + e.getMessage()); - } - return dataspace_id; - } - - - // Help function for determining the dimensionality (or rank) of - // a dataspace - public static int H5Sget_simple_extent_ndims_wrap (int space_id) - { - int rank = -1; - - try - { - // Determine the dimensionality (or rank) of a dataspace. - rank = H5.H5Sget_simple_extent_ndims (space_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("HyperSlab.H5Sget_simple_extent_ndims_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("HyperSlab.H5Sget_simple_extent_ndims_wrap() with other Exception: " - + e.getMessage()); - } - return rank; - } - - - // Help function for returning the size and maximum sizes of each - // dimension of a dataspace through the dims and maxdims parameters. - public static int H5Sget_simple_extent_dims_wrap (int space_id, - long dims[], - long maxdims[]) - { - int dimension_number = -1; - - try - { - dimension_number = H5.H5Sget_simple_extent_dims (space_id, dims, - maxdims); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("HyperSlab.H5Sget_simple_extent_dims_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("HyperSlab.H5Sget_simple_extent_dims_wrap() with other Exception: " - + e.getMessage()); - } - return dimension_number; - } - - - // Help function for selecting a hyperslab region to add to the - // current selected region for the dataspace specified by space_id. - public static int H5Sselect_hyperslab_wrap (int space_id, int op, - long start[], long stride[], - long count[], long block[]) - { - int status = -1; - - try - { - status = H5.H5Sselect_hyperslab (space_id, op, start, stride, - count, block); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("HyperSlab.H5Sselect_hyperslab_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("HyperSlab.H5Sselect_hyperslab_wrap() with other Exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for creating a dataset - public static int H5Dcreate_wrap (int loc_id, String name, int type_id, - int space_id, int create_plist_id) - { - int dataset_id = -1; // dataset identifier - - try - { - // Create the dataset - dataset_id = H5.H5Dcreate (loc_id, name, type_id, space_id, - create_plist_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("HyperSlab.H5Dcreate_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("HyperSlab.H5Dcreate_wrap() with other Exception: " - + e.getMessage()); - } - return dataset_id; - } - - - // Help function for writing the dataset - public static int H5Dwrite_wrap (int dataset_id, int mem_type_id, - int mem_space_id, int file_space_id, - int xfer_plist_id, Object buf) - { - int status = -1; - - try - { - // Write the dataset. - status = H5.H5Dwrite (dataset_id, mem_type_id, mem_space_id, - file_space_id, xfer_plist_id, buf); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("HyperSlab.H5Dwrite_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("HyperSlab.H5Dwrite_wrap() with other exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for reading the dataset - public static int H5Dread_wrap (int dataset_id, int mem_type_id, - int mem_space_id, int file_space_id, - int xfer_plist_id, Object obj) - { - int status = -1; - - try - { - // Read the dataset. - status = H5.H5Dread (dataset_id, mem_type_id, mem_space_id, - file_space_id, xfer_plist_id, obj); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("HyperSlab.H5Dread_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("HyperSlab.H5Dread_wrap() with other exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for terminating access to the data space. - public static int H5Sclose_wrap (int dataspace_id) - { - int status = -1; - - try - { - // Terminate access to the data space. - status = H5.H5Sclose (dataspace_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("HyperSlab.H5Sclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("HyperSlab.H5Sclose_wrap() with other exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for ending access to the dataset and releasing - // resources used by it. - public static int H5Dclose_wrap (int dataset_id) - { - int status = -1; - - try - { - // End access to the dataset and release resources used by it. - status = H5.H5Dclose (dataset_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("HyperSlab.H5Dclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("HyperSlab.H5Dclose_wrap() with other exception: " - + e.getMessage()); - } - return status; - } - - - // Help function for terminating access to the file. - public static int H5Fclose_wrap (int file_id) - { - int status = -1; - - try - { - // Terminate access to the file. - status = H5.H5Fclose (file_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("HyperSlab.H5Fclose_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("HyperSlab.H5Fclose_wrap() with other exception: " - + e.getMessage()); - } - return status; - } -} diff --git a/doc/html/Tutor/examples/java/Makefile b/doc/html/Tutor/examples/java/Makefile deleted file mode 100644 index a70ab0b..0000000 --- a/doc/html/Tutor/examples/java/Makefile +++ /dev/null @@ -1,92 +0,0 @@ -# Generated automatically from Makefile.in by configure. -# /*======================================================================= -# UNIVERSITY OF ILLINOIS (UI), NATIONAL CENTER FOR SUPERCOMPUTING -# APPLICATIONS (NCSA), Software Distribution Policy for Public Domain -# Software -# -# NCSA HDF Version 5 source code and documentation are in the public -# domain, available without fee for education, research, non-commercial and -# commercial purposes. Users may distribute the binary or source code to -# third parties provided that this statement appears on all copies and that -# no charge is made for such copies. -# -# UI MAKES NO REPRESENTATIONS ABOUT THE SUITABILITY OF THE SOFTWARE FOR ANY -# PURPOSE. IT IS PROVIDED "AS IS" WITHOUT EXPRESS OR IMPLIED WARRANTY. THE -# UI SHALL NOT BE LIABLE FOR ANY DAMAGES SUFFERED BY THE USER OF THIS -# SOFTWARE. The software may have been developed under agreements between -# the UI and the Federal Government which entitle the Government to certain -# rights. -# -# We ask, but do not require that the following message be include in all -# derived works: -# -# Portions developed at the National Center for Supercomputing Applications -# at the University of Illinois at Urbana-Champaign. -# -# By copying this program, you, the user, agree to abide by the conditions -# and understandings with respect to any software which is marked with a -# public domain notice. -# -# =======================================================================*/ -# - - -JAVAC = /usr/java1.2/bin/javac -FIND = /bin/find - -CLASSPATH=/usr/java1.2/jre/lib/rt.jar:/afs/ncsa.uiuc.edu/projects/hdf/java/java2/mcgrath/arabica/java-hdf5 - - -.SUFFIXES: .java .class - -.java.class: - $(JAVAC) -classpath $(CLASSPATH) $< - -tutorial: ./Compound.class \ - ./Copy.class \ - ./CreateAttribute.class \ - ./CreateDataset.class \ - ./CreateFile.class \ - ./CreateFileInput.class \ - ./CreateGroup.class \ - ./CreateGroupAR.class \ - ./CreateGroupDataset.class \ - ./DatasetRdWt.class \ - ./HyperSlab.class - chmod u+x *.sh - -clean: clean-classes - -distclean: clean-classes clean-data - rm config.cache config.status config.log - rm -rf ./Makefile - -clean-classes: - $(FIND) . \( -name '#*' -o -name '*~' -o -name '*.class' \) -exec rm -f {} \; ;\ - -clean-data: - rm -rf *.h5 - -Compound: ./Compound.class -Copy: ./Copy.class -CreateAttribute: ./CreateAttribute.class -CreateDataset: ./CreateDataset.class -CreateFile: ./CreateFile.class -CreateFileInput: ./CreateFileInput.class -CreateGroup: ./CreateGroup.class -CreateGroupAR: ./CreateGroupAR.class -CreateGroupDataset: ./CreateGroupDataset.class -DatasetRdWt: ./DatasetRdWt.class -HyperSlab: ./HyperSlab.class - -CLASSES= ./Compound.class \ - ./Copy.class \ - ./CreateAttribute.class \ - ./CreateDataset.class \ - ./CreateFileInput.class \ - ./CreateFile.class \ - ./CreateGroup.class \ - ./CreateGroupAR.class \ - ./CreateGroupDataset.class \ - ./DatasetRdWt.class \ - ./HyperSlab.class diff --git a/doc/html/Tutor/examples/java/Makefile.in b/doc/html/Tutor/examples/java/Makefile.in deleted file mode 100644 index e6bd408..0000000 --- a/doc/html/Tutor/examples/java/Makefile.in +++ /dev/null @@ -1,91 +0,0 @@ -# /*======================================================================= -# UNIVERSITY OF ILLINOIS (UI), NATIONAL CENTER FOR SUPERCOMPUTING -# APPLICATIONS (NCSA), Software Distribution Policy for Public Domain -# Software -# -# NCSA HDF Version 5 source code and documentation are in the public -# domain, available without fee for education, research, non-commercial and -# commercial purposes. Users may distribute the binary or source code to -# third parties provided that this statement appears on all copies and that -# no charge is made for such copies. -# -# UI MAKES NO REPRESENTATIONS ABOUT THE SUITABILITY OF THE SOFTWARE FOR ANY -# PURPOSE. IT IS PROVIDED "AS IS" WITHOUT EXPRESS OR IMPLIED WARRANTY. THE -# UI SHALL NOT BE LIABLE FOR ANY DAMAGES SUFFERED BY THE USER OF THIS -# SOFTWARE. The software may have been developed under agreements between -# the UI and the Federal Government which entitle the Government to certain -# rights. -# -# We ask, but do not require that the following message be include in all -# derived works: -# -# Portions developed at the National Center for Supercomputing Applications -# at the University of Illinois at Urbana-Champaign. -# -# By copying this program, you, the user, agree to abide by the conditions -# and understandings with respect to any software which is marked with a -# public domain notice. -# -# =======================================================================*/ -# - - -JAVAC = @JAVAC@ -FIND = @FIND@ - -CLASSPATH=@CLASSPATH@ - - -.SUFFIXES: .java .class - -.java.class: - $(JAVAC) -classpath $(CLASSPATH) $< - -tutorial: ./Compound.class \ - ./Copy.class \ - ./CreateAttribute.class \ - ./CreateDataset.class \ - ./CreateFile.class \ - ./CreateFileInput.class \ - ./CreateGroup.class \ - ./CreateGroupAR.class \ - ./CreateGroupDataset.class \ - ./DatasetRdWt.class \ - ./HyperSlab.class - chmod u+x *.sh - -clean: clean-classes - -distclean: clean-classes clean-data - rm config.cache config.status config.log - rm -rf ./Makefile - -clean-classes: - $(FIND) . \( -name '#*' -o -name '*~' -o -name '*.class' \) -exec rm -f {} \; ;\ - -clean-data: - rm -rf *.h5 - -Compound: ./Compound.class -Copy: ./Copy.class -CreateAttribute: ./CreateAttribute.class -CreateDataset: ./CreateDataset.class -CreateFile: ./CreateFile.class -CreateFileInput: ./CreateFileInput.class -CreateGroup: ./CreateGroup.class -CreateGroupAR: ./CreateGroupAR.class -CreateGroupDataset: ./CreateGroupDataset.class -DatasetRdWt: ./DatasetRdWt.class -HyperSlab: ./HyperSlab.class - -CLASSES= ./Compound.class \ - ./Copy.class \ - ./CreateAttribute.class \ - ./CreateDataset.class \ - ./CreateFileInput.class \ - ./CreateFile.class \ - ./CreateGroup.class \ - ./CreateGroupAR.class \ - ./CreateGroupDataset.class \ - ./DatasetRdWt.class \ - ./HyperSlab.class diff --git a/doc/html/Tutor/examples/java/README b/doc/html/Tutor/examples/java/README deleted file mode 100644 index 95c9360..0000000 --- a/doc/html/Tutor/examples/java/README +++ /dev/null @@ -1,21 +0,0 @@ -These files are Java versions of the example programs used in -the HDF-5 tutoral: - http://hdf.ncsa.uiuc.edu/training/hdf5/ - -The examples here correspond to the examples explained in the first 13 -sections of the tutorial. - -Lesson C program Java program Topic - -4 h5_crtfile.c CreateFile.java Create an HDF-5 file. -5 h5_crtdat.c CreateDataset.java Create a dataset. -6 h5_rdwt.c DatasetRdWt.java Write/Read a dataset. -7 h5_crtatt.c CreateAttribute.java Create an attribute. -8 h5_crtgrp.c CreateGroup.java Create a group. -9 h5_crtgrpar.c CreateGroupAR.java Abs. and Rel. paths. -10 h5_crtgrpd.c CreateGroupDataset.java Create dataset in grp. - -11 h5_compound.c Compound.java Compound datatype -12 h5_hyperslab.c Hyperslab.java Selection of hyperslab -13 h5_copy.c Copy.java Selection of elements - diff --git a/doc/html/Tutor/examples/java/readme.html b/doc/html/Tutor/examples/java/readme.html deleted file mode 100644 index ac96004..0000000 --- a/doc/html/Tutor/examples/java/readme.html +++ /dev/null @@ -1,192 +0,0 @@ -<!doctype html public "-//w3c//dtd html 4.0 transitional//en"> -<html> -<head> - <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1"> - <meta name="GENERATOR" content="Mozilla/4.61 [en] (WinNT; I) [Netscape]"> - <title>readme</title> -</head> -<body text="#000000" bgcolor="#FFFFFF" link="#0000EE" vlink="#551A8B" alink="#FF0000"> - -<h3> -<b>HDF 5 Tutorial Examples in Java</b></h3> - -<p><br>These files are Java versions of the example programs used in the -HDF-5 tutoral: -<br> <a href="http://hdf.ncsa.uiuc.edu/training/hdf5/">http://hdf.ncsa.uiuc.edu/training/hdf5/</a> -<p>The examples here correspond to the examples explained in the first -13 sections of the tutorial. -<br> -<br> -<table BORDER CELLPADDING=2 WIDTH="100%" > -<tr> -<td> -<center><b>Lesson</b></center> -</td> - -<td> -<center><b>Topic</b></center> -</td> - -<td> -<center><b>C file</b></center> -</td> - -<td> -<center><b>Java file</b></center> -</td> -</tr> - -<tr> -<td><a href="http://hdf.ncsa.uiuc.edu/training/hdf5/crtfile.html">Lesson -4</a></td> - -<td>Create an HDF-5 file.</td> - -<td>h5_crtfile.c</td> - -<td>CreateFile.java</td> -</tr> - -<tr> -<td><a href="http://hdf.ncsa.uiuc.edu/training/hdf5/crtdat.html">Lesson -5</a></td> - -<td>Create a Dataset in an HDF-5 file</td> - -<td>h5_crtdat.c</td> - -<td>CreateDataset.java</td> -</tr> - -<tr> -<td><a href="http://hdf.ncsa.uiuc.edu/training/hdf5/rdwt.html">Lesson 6</a></td> - -<td>Write and Read data in a dataset</td> - -<td>h5_rdwt.c</td> - -<td>DatasetRdWt.java</td> -</tr> - -<tr> -<td><a href="http://hdf.ncsa.uiuc.edu/training/hdf5/crtatt.html">Lesson -7</a></td> - -<td>Create an attribute.</td> - -<td>h5_crtatt.c</td> - -<td>CreateAttribute.java</td> -</tr> - -<tr> -<td><a href="http://hdf.ncsa.uiuc.edu/training/hdf5/crtgrp.html">Lesson -8</a></td> - -<td>Create a group.</td> - -<td>h5_crtgrp.c</td> - -<td>CreateGroup.java</td> -</tr> - -<tr> -<td><a href="http://hdf.ncsa.uiuc.edu/training/hdf5/crtgrpar.html">Lesson -9</a></td> - -<td>Using Absolute and relative paths</td> - -<td>h5_crtgrpar.c</td> - -<td>CreateGroupAR.java</td> -</tr> - -<tr> -<td><a href="http://hdf.ncsa.uiuc.edu/training/hdf5/crtgrpd.html">Lesson -10</a></td> - -<td>Create a dataset in a group.</td> - -<td>h5_crtgrpd.c</td> - -<td>CreateGroupDataset.java</td> -</tr> - -<tr> -<td><a href="http://hdf.ncsa.uiuc.edu/training/hdf5/compound.html">Lesson -11</a></td> - -<td>Using Compound Datatypes</td> - -<td>h5_compound.c</td> - -<td>Compound.java</td> -</tr> - -<tr> -<td><a href="http://hdf.ncsa.uiuc.edu/training/hdf5/select.html">Lesson -12</a></td> - -<td>Selection of a hyperslab.</td> - -<td>h5_hyperslab.c</td> - -<td>Hyperslab.java</td> -</tr> - -<tr> -<td><a href="http://hdf.ncsa.uiuc.edu/training/hdf5/selectc.html">Lesson -13</a></td> - -<td>Selection of elements.</td> - -<td>h5_copy.c</td> - -<td>Copy.java</td> -</tr> -</table> - -<p> -<hr><b>Some Explanation About Tutorial Examples</b> -<p>The Java tutorial programs try to stay close to the corresponding C -program. The main function's structure almost same as C program, with one -call for each HDF5 library function. For example, where the C program has -a call to <b>H5Fopen()</b>, the Java program has a call to <b>H5Fopen_wrap()</b>. -<p>The wrapper functions call the HDF-5 library using the Java HDF-5 Interface -(JHI5). The HDF-5 C interface returns error codes; these are represented -by Java Exceptions in the JHI5. The wrapper function catches the exception -and prints a message. -<p>For example, the <b>H5Fopen_wrap() </b>method calls the JHI5, and catches -any exceptions which may occur: -<pre> <b>public static int H5Fopen_wrap (String name, int flags, int access_id) - { - int file_id = -1; // file identifier - try - { - // Create a new file using default file properties. - file_id = H5.H5Fopen (name, flags, access_id); - } - catch (HDF5Exception hdf5e) - { - System.out.println - ("DatasetRdWt.H5Fopen_wrap() with HDF5Exception: " - + hdf5e.getMessage()); - } - catch (Exception e) - { - System.out.println - ("DatasetRdWt.H5Fopen_wrap() with other Exception: " - + e.getMessage()); - } - return file_id; - }</b></pre> - -<p><br> -<hr noshade size=1><a href="http://www.ncsa.uiuc.edu/"><img SRC="http://www.ncsa.uiuc.edu/Images/NCSAhome/footerlogo.gif" ALT="NCSA" BORDER=0 ></a> -<br><font face="arial,helvetica"><font size=-1><a href="http://www.ncsa.uiuc.edu/">The -National Center for Supercomputing Applications</a></font></font> -<br><font face="arial,helvetica"><font size=-1><a href="http://www.uiuc.edu/">University -of Illinois at Urbana-Champaign</a></font></font> -<p><font face="arial,helvetica"><font size=-1><a href="mailto:hdfhelp@ncsa.uiuc.edu">hdfhelp@ncsa.uiuc.edu</a></font></font> -</body> -</html> diff --git a/doc/html/Tutor/examples/java/runCompound.sh b/doc/html/Tutor/examples/java/runCompound.sh deleted file mode 100644 index ef2be38..0000000 --- a/doc/html/Tutor/examples/java/runCompound.sh +++ /dev/null @@ -1,17 +0,0 @@ -#!/bin/sh - -JH5INSTALLDIR=/afs/ncsa/projects/hdf/java/java2/mcgrath/arabica/New5 -HDF5LIB=/afs/ncsa/projects/hdf/release/prehdf5-1.2.1/SunOS_5.7/lib - -#make this relative to the source root... -PWD=/afs/ncsa.uiuc.edu/projects/hdf/java/java2/mcgrath/arabica/java-hdf5 -LIBDIR=$JH5INSTALLDIR"/lib" - -CLASSPATH=".:"$LIBDIR"/jhdf5.jar" - -LD_LIBRARY_PATH=$HDF5LIB":"$LIBDIR"/solaris" - -export CLASSPATH -export LD_LIBRARY_PATH - -/usr/java1.2/bin/java Compound $* diff --git a/doc/html/Tutor/examples/java/runCompound.sh.in b/doc/html/Tutor/examples/java/runCompound.sh.in deleted file mode 100644 index bc58088..0000000 --- a/doc/html/Tutor/examples/java/runCompound.sh.in +++ /dev/null @@ -1,17 +0,0 @@ -#!/bin/sh - -JH5INSTALLDIR=@JH5INST@ -HDF5LIB=@HDF5LIB@ - -#make this relative to the source root... -PWD=@PWD@ -LIBDIR=$JH5INSTALLDIR"/lib" - -CLASSPATH=".:"$LIBDIR"/jhdf5.jar" - -LD_LIBRARY_PATH=$HDF5LIB":"$LIBDIR"/@JAVATARG@" - -export CLASSPATH -export LD_LIBRARY_PATH - -@JAVA@ Compound $* diff --git a/doc/html/Tutor/examples/java/runCopy.sh b/doc/html/Tutor/examples/java/runCopy.sh deleted file mode 100644 index de71783..0000000 --- a/doc/html/Tutor/examples/java/runCopy.sh +++ /dev/null @@ -1,17 +0,0 @@ -#!/bin/sh - -JH5INSTALLDIR=/afs/ncsa/projects/hdf/java/java2/mcgrath/arabica/New5 -HDF5LIB=/afs/ncsa/projects/hdf/release/prehdf5-1.2.1/SunOS_5.7/lib - -#make this relative to the source root... -PWD=/afs/ncsa.uiuc.edu/projects/hdf/java/java2/mcgrath/arabica/java-hdf5 -LIBDIR=$JH5INSTALLDIR"/lib" - -CLASSPATH=".:"$LIBDIR"/jhdf5.jar" - -LD_LIBRARY_PATH=$HDF5LIB":"$LIBDIR"/solaris" - -export CLASSPATH -export LD_LIBRARY_PATH - -/usr/java1.2/bin/java Copy $* diff --git a/doc/html/Tutor/examples/java/runCopy.sh.in b/doc/html/Tutor/examples/java/runCopy.sh.in deleted file mode 100644 index 2fd8a46..0000000 --- a/doc/html/Tutor/examples/java/runCopy.sh.in +++ /dev/null @@ -1,17 +0,0 @@ -#!/bin/sh - -JH5INSTALLDIR=@JH5INST@ -HDF5LIB=@HDF5LIB@ - -#make this relative to the source root... -PWD=@PWD@ -LIBDIR=$JH5INSTALLDIR"/lib" - -CLASSPATH=".:"$LIBDIR"/jhdf5.jar" - -LD_LIBRARY_PATH=$HDF5LIB":"$LIBDIR"/@JAVATARG@" - -export CLASSPATH -export LD_LIBRARY_PATH - -@JAVA@ Copy $* diff --git a/doc/html/Tutor/examples/java/runCreateAttribute.sh b/doc/html/Tutor/examples/java/runCreateAttribute.sh deleted file mode 100644 index 419abce..0000000 --- a/doc/html/Tutor/examples/java/runCreateAttribute.sh +++ /dev/null @@ -1,17 +0,0 @@ -#!/bin/sh - -JH5INSTALLDIR=/afs/ncsa/projects/hdf/java/java2/mcgrath/arabica/New5 -HDF5LIB=/afs/ncsa/projects/hdf/release/prehdf5-1.2.1/SunOS_5.7/lib - -#make this relative to the source root... -PWD=/afs/ncsa.uiuc.edu/projects/hdf/java/java2/mcgrath/arabica/java-hdf5 -LIBDIR=$JH5INSTALLDIR"/lib" - -CLASSPATH=".:"$LIBDIR"/jhdf5.jar" - -LD_LIBRARY_PATH=$HDF5LIB":"$LIBDIR"/solaris" - -export CLASSPATH -export LD_LIBRARY_PATH - -/usr/java1.2/bin/java CreateAttribute $* diff --git a/doc/html/Tutor/examples/java/runCreateAttribute.sh.in b/doc/html/Tutor/examples/java/runCreateAttribute.sh.in deleted file mode 100644 index 83bcdc7..0000000 --- a/doc/html/Tutor/examples/java/runCreateAttribute.sh.in +++ /dev/null @@ -1,17 +0,0 @@ -#!/bin/sh - -JH5INSTALLDIR=@JH5INST@ -HDF5LIB=@HDF5LIB@ - -#make this relative to the source root... -PWD=@PWD@ -LIBDIR=$JH5INSTALLDIR"/lib" - -CLASSPATH=".:"$LIBDIR"/jhdf5.jar" - -LD_LIBRARY_PATH=$HDF5LIB":"$LIBDIR"/@JAVATARG@" - -export CLASSPATH -export LD_LIBRARY_PATH - -@JAVA@ CreateAttribute $* diff --git a/doc/html/Tutor/examples/java/runCreateDataset.sh b/doc/html/Tutor/examples/java/runCreateDataset.sh deleted file mode 100644 index 371e811..0000000 --- a/doc/html/Tutor/examples/java/runCreateDataset.sh +++ /dev/null @@ -1,17 +0,0 @@ -#!/bin/sh - -JH5INSTALLDIR=/afs/ncsa/projects/hdf/java/java2/mcgrath/arabica/New5 -HDF5LIB=/afs/ncsa/projects/hdf/release/prehdf5-1.2.1/SunOS_5.7/lib - -#make this relative to the source root... -PWD=/afs/ncsa.uiuc.edu/projects/hdf/java/java2/mcgrath/arabica/java-hdf5 -LIBDIR=$JH5INSTALLDIR"/lib" - -CLASSPATH=".:"$LIBDIR"/jhdf5.jar" - -LD_LIBRARY_PATH=$HDF5LIB":"$LIBDIR"/solaris" - -export CLASSPATH -export LD_LIBRARY_PATH - -/usr/java1.2/bin/java CreateDataset $* diff --git a/doc/html/Tutor/examples/java/runCreateDataset.sh.in b/doc/html/Tutor/examples/java/runCreateDataset.sh.in deleted file mode 100644 index 606e153..0000000 --- a/doc/html/Tutor/examples/java/runCreateDataset.sh.in +++ /dev/null @@ -1,17 +0,0 @@ -#!/bin/sh - -JH5INSTALLDIR=@JH5INST@ -HDF5LIB=@HDF5LIB@ - -#make this relative to the source root... -PWD=@PWD@ -LIBDIR=$JH5INSTALLDIR"/lib" - -CLASSPATH=".:"$LIBDIR"/jhdf5.jar" - -LD_LIBRARY_PATH=$HDF5LIB":"$LIBDIR"/@JAVATARG@" - -export CLASSPATH -export LD_LIBRARY_PATH - -@JAVA@ CreateDataset $* diff --git a/doc/html/Tutor/examples/java/runCreateFile.sh b/doc/html/Tutor/examples/java/runCreateFile.sh deleted file mode 100644 index e32c0ab..0000000 --- a/doc/html/Tutor/examples/java/runCreateFile.sh +++ /dev/null @@ -1,17 +0,0 @@ -#!/bin/sh - -JH5INSTALLDIR=/afs/ncsa/projects/hdf/java/java2/mcgrath/arabica/New5 -HDF5LIB=/afs/ncsa/projects/hdf/release/prehdf5-1.2.1/SunOS_5.7/lib - -#make this relative to the source root... -PWD=/afs/ncsa.uiuc.edu/projects/hdf/java/java2/mcgrath/arabica/java-hdf5 -LIBDIR=$JH5INSTALLDIR"/lib" - -CLASSPATH=".:"$LIBDIR"/jhdf5.jar" - -LD_LIBRARY_PATH=$HDF5LIB":"$LIBDIR"/solaris" - -export CLASSPATH -export LD_LIBRARY_PATH - -/usr/java1.2/bin/java CreateFile $* diff --git a/doc/html/Tutor/examples/java/runCreateFile.sh.in b/doc/html/Tutor/examples/java/runCreateFile.sh.in deleted file mode 100644 index bf48b9c..0000000 --- a/doc/html/Tutor/examples/java/runCreateFile.sh.in +++ /dev/null @@ -1,17 +0,0 @@ -#!/bin/sh - -JH5INSTALLDIR=@JH5INST@ -HDF5LIB=@HDF5LIB@ - -#make this relative to the source root... -PWD=@PWD@ -LIBDIR=$JH5INSTALLDIR"/lib" - -CLASSPATH=".:"$LIBDIR"/jhdf5.jar" - -LD_LIBRARY_PATH=$HDF5LIB":"$LIBDIR"/@JAVATARG@" - -export CLASSPATH -export LD_LIBRARY_PATH - -@JAVA@ CreateFile $* diff --git a/doc/html/Tutor/examples/java/runCreateFileInput.sh b/doc/html/Tutor/examples/java/runCreateFileInput.sh deleted file mode 100644 index fa12f06..0000000 --- a/doc/html/Tutor/examples/java/runCreateFileInput.sh +++ /dev/null @@ -1,17 +0,0 @@ -#!/bin/sh - -JH5INSTALLDIR=/afs/ncsa/projects/hdf/java/java2/mcgrath/arabica/New5 -HDF5LIB=/afs/ncsa/projects/hdf/release/prehdf5-1.2.1/SunOS_5.7/lib - -#make this relative to the source root... -PWD=/afs/ncsa.uiuc.edu/projects/hdf/java/java2/mcgrath/arabica/java-hdf5 -LIBDIR=$JH5INSTALLDIR"/lib" - -CLASSPATH=".:"$LIBDIR"/jhdf5.jar" - -LD_LIBRARY_PATH=$HDF5LIB":"$LIBDIR"/solaris" - -export CLASSPATH -export LD_LIBRARY_PATH - -/usr/java1.2/bin/java CreateFileInput $* diff --git a/doc/html/Tutor/examples/java/runCreateFileInput.sh.in b/doc/html/Tutor/examples/java/runCreateFileInput.sh.in deleted file mode 100644 index 776eac5..0000000 --- a/doc/html/Tutor/examples/java/runCreateFileInput.sh.in +++ /dev/null @@ -1,17 +0,0 @@ -#!/bin/sh - -JH5INSTALLDIR=@JH5INST@ -HDF5LIB=@HDF5LIB@ - -#make this relative to the source root... -PWD=@PWD@ -LIBDIR=$JH5INSTALLDIR"/lib" - -CLASSPATH=".:"$LIBDIR"/jhdf5.jar" - -LD_LIBRARY_PATH=$HDF5LIB":"$LIBDIR"/@JAVATARG@" - -export CLASSPATH -export LD_LIBRARY_PATH - -@JAVA@ CreateFileInput $* diff --git a/doc/html/Tutor/examples/java/runCreateGroup.sh b/doc/html/Tutor/examples/java/runCreateGroup.sh deleted file mode 100644 index ee9deee..0000000 --- a/doc/html/Tutor/examples/java/runCreateGroup.sh +++ /dev/null @@ -1,17 +0,0 @@ -#!/bin/sh - -JH5INSTALLDIR=/afs/ncsa/projects/hdf/java/java2/mcgrath/arabica/New5 -HDF5LIB=/afs/ncsa/projects/hdf/release/prehdf5-1.2.1/SunOS_5.7/lib - -#make this relative to the source root... -PWD=/afs/ncsa.uiuc.edu/projects/hdf/java/java2/mcgrath/arabica/java-hdf5 -LIBDIR=$JH5INSTALLDIR"/lib" - -CLASSPATH=".:"$LIBDIR"/jhdf5.jar" - -LD_LIBRARY_PATH=$HDF5LIB":"$LIBDIR"/solaris" - -export CLASSPATH -export LD_LIBRARY_PATH - -/usr/java1.2/bin/java CreateGroup $* diff --git a/doc/html/Tutor/examples/java/runCreateGroup.sh.in b/doc/html/Tutor/examples/java/runCreateGroup.sh.in deleted file mode 100644 index e2eadb5..0000000 --- a/doc/html/Tutor/examples/java/runCreateGroup.sh.in +++ /dev/null @@ -1,17 +0,0 @@ -#!/bin/sh - -JH5INSTALLDIR=@JH5INST@ -HDF5LIB=@HDF5LIB@ - -#make this relative to the source root... -PWD=@PWD@ -LIBDIR=$JH5INSTALLDIR"/lib" - -CLASSPATH=".:"$LIBDIR"/jhdf5.jar" - -LD_LIBRARY_PATH=$HDF5LIB":"$LIBDIR"/@JAVATARG@" - -export CLASSPATH -export LD_LIBRARY_PATH - -@JAVA@ CreateGroup $* diff --git a/doc/html/Tutor/examples/java/runCreateGroupAR.sh b/doc/html/Tutor/examples/java/runCreateGroupAR.sh deleted file mode 100644 index 2619a11..0000000 --- a/doc/html/Tutor/examples/java/runCreateGroupAR.sh +++ /dev/null @@ -1,17 +0,0 @@ -#!/bin/sh - -JH5INSTALLDIR=/afs/ncsa/projects/hdf/java/java2/mcgrath/arabica/New5 -HDF5LIB=/afs/ncsa/projects/hdf/release/prehdf5-1.2.1/SunOS_5.7/lib - -#make this relative to the source root... -PWD=/afs/ncsa.uiuc.edu/projects/hdf/java/java2/mcgrath/arabica/java-hdf5 -LIBDIR=$JH5INSTALLDIR"/lib" - -CLASSPATH=".:"$LIBDIR"/jhdf5.jar" - -LD_LIBRARY_PATH=$HDF5LIB":"$LIBDIR"/solaris" - -export CLASSPATH -export LD_LIBRARY_PATH - -/usr/java1.2/bin/java CreateGroupAR $* diff --git a/doc/html/Tutor/examples/java/runCreateGroupAR.sh.in b/doc/html/Tutor/examples/java/runCreateGroupAR.sh.in deleted file mode 100644 index d61d852..0000000 --- a/doc/html/Tutor/examples/java/runCreateGroupAR.sh.in +++ /dev/null @@ -1,17 +0,0 @@ -#!/bin/sh - -JH5INSTALLDIR=@JH5INST@ -HDF5LIB=@HDF5LIB@ - -#make this relative to the source root... -PWD=@PWD@ -LIBDIR=$JH5INSTALLDIR"/lib" - -CLASSPATH=".:"$LIBDIR"/jhdf5.jar" - -LD_LIBRARY_PATH=$HDF5LIB":"$LIBDIR"/@JAVATARG@" - -export CLASSPATH -export LD_LIBRARY_PATH - -@JAVA@ CreateGroupAR $* diff --git a/doc/html/Tutor/examples/java/runCreateGroupDataset.sh b/doc/html/Tutor/examples/java/runCreateGroupDataset.sh deleted file mode 100644 index 15b7bfa..0000000 --- a/doc/html/Tutor/examples/java/runCreateGroupDataset.sh +++ /dev/null @@ -1,17 +0,0 @@ -#!/bin/sh - -JH5INSTALLDIR=/afs/ncsa/projects/hdf/java/java2/mcgrath/arabica/New5 -HDF5LIB=/afs/ncsa/projects/hdf/release/prehdf5-1.2.1/SunOS_5.7/lib - -#make this relative to the source root... -PWD=/afs/ncsa.uiuc.edu/projects/hdf/java/java2/mcgrath/arabica/java-hdf5 -LIBDIR=$JH5INSTALLDIR"/lib" - -CLASSPATH=".:"$LIBDIR"/jhdf5.jar" - -LD_LIBRARY_PATH=$HDF5LIB":"$LIBDIR"/solaris" - -export CLASSPATH -export LD_LIBRARY_PATH - -/usr/java1.2/bin/java CreateGroupDataset $* diff --git a/doc/html/Tutor/examples/java/runCreateGroupDataset.sh.in b/doc/html/Tutor/examples/java/runCreateGroupDataset.sh.in deleted file mode 100644 index af2b4b5..0000000 --- a/doc/html/Tutor/examples/java/runCreateGroupDataset.sh.in +++ /dev/null @@ -1,17 +0,0 @@ -#!/bin/sh - -JH5INSTALLDIR=@JH5INST@ -HDF5LIB=@HDF5LIB@ - -#make this relative to the source root... -PWD=@PWD@ -LIBDIR=$JH5INSTALLDIR"/lib" - -CLASSPATH=".:"$LIBDIR"/jhdf5.jar" - -LD_LIBRARY_PATH=$HDF5LIB":"$LIBDIR"/@JAVATARG@" - -export CLASSPATH -export LD_LIBRARY_PATH - -@JAVA@ CreateGroupDataset $* diff --git a/doc/html/Tutor/examples/java/runDatasetRdWt.sh b/doc/html/Tutor/examples/java/runDatasetRdWt.sh deleted file mode 100644 index a049ea8..0000000 --- a/doc/html/Tutor/examples/java/runDatasetRdWt.sh +++ /dev/null @@ -1,17 +0,0 @@ -#!/bin/sh - -JH5INSTALLDIR=/afs/ncsa/projects/hdf/java/java2/mcgrath/arabica/New5 -HDF5LIB=/afs/ncsa/projects/hdf/release/prehdf5-1.2.1/SunOS_5.7/lib - -#make this relative to the source root... -PWD=/afs/ncsa.uiuc.edu/projects/hdf/java/java2/mcgrath/arabica/java-hdf5 -LIBDIR=$JH5INSTALLDIR"/lib" - -CLASSPATH=".:"$LIBDIR"/jhdf5.jar" - -LD_LIBRARY_PATH=$HDF5LIB":"$LIBDIR"/solaris" - -export CLASSPATH -export LD_LIBRARY_PATH - -/usr/java1.2/bin/java DatasetRdWt $* diff --git a/doc/html/Tutor/examples/java/runDatasetRdWt.sh.in b/doc/html/Tutor/examples/java/runDatasetRdWt.sh.in deleted file mode 100644 index ad3a049..0000000 --- a/doc/html/Tutor/examples/java/runDatasetRdWt.sh.in +++ /dev/null @@ -1,17 +0,0 @@ -#!/bin/sh - -JH5INSTALLDIR=@JH5INST@ -HDF5LIB=@HDF5LIB@ - -#make this relative to the source root... -PWD=@PWD@ -LIBDIR=$JH5INSTALLDIR"/lib" - -CLASSPATH=".:"$LIBDIR"/jhdf5.jar" - -LD_LIBRARY_PATH=$HDF5LIB":"$LIBDIR"/@JAVATARG@" - -export CLASSPATH -export LD_LIBRARY_PATH - -@JAVA@ DatasetRdWt $* diff --git a/doc/html/Tutor/examples/java/runHyperSlab.sh b/doc/html/Tutor/examples/java/runHyperSlab.sh deleted file mode 100644 index 549f807..0000000 --- a/doc/html/Tutor/examples/java/runHyperSlab.sh +++ /dev/null @@ -1,17 +0,0 @@ -#!/bin/sh - -JH5INSTALLDIR=/afs/ncsa/projects/hdf/java/java2/mcgrath/arabica/New5 -HDF5LIB=/afs/ncsa/projects/hdf/release/prehdf5-1.2.1/SunOS_5.7/lib - -#make this relative to the source root... -PWD=/afs/ncsa.uiuc.edu/projects/hdf/java/java2/mcgrath/arabica/java-hdf5 -LIBDIR=$JH5INSTALLDIR"/lib" - -CLASSPATH=".:"$LIBDIR"/jhdf5.jar" - -LD_LIBRARY_PATH=$HDF5LIB":"$LIBDIR"/solaris" - -export CLASSPATH -export LD_LIBRARY_PATH - -/usr/java1.2/bin/java HyperSlab $* diff --git a/doc/html/Tutor/examples/java/runHyperSlab.sh.in b/doc/html/Tutor/examples/java/runHyperSlab.sh.in deleted file mode 100644 index f515fc9..0000000 --- a/doc/html/Tutor/examples/java/runHyperSlab.sh.in +++ /dev/null @@ -1,17 +0,0 @@ -#!/bin/sh - -JH5INSTALLDIR=@JH5INST@ -HDF5LIB=@HDF5LIB@ - -#make this relative to the source root... -PWD=@PWD@ -LIBDIR=$JH5INSTALLDIR"/lib" - -CLASSPATH=".:"$LIBDIR"/jhdf5.jar" - -LD_LIBRARY_PATH=$HDF5LIB":"$LIBDIR"/@JAVATARG@" - -export CLASSPATH -export LD_LIBRARY_PATH - -@JAVA@ HyperSlab $* |