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diff --git a/doc/html/Tutor/mount.html b/doc/html/Tutor/mount.html index 9d0e494..fc37149 100644 --- a/doc/html/Tutor/mount.html +++ b/doc/html/Tutor/mount.html @@ -35,244 +35,196 @@ width=78 height=27 alt="NCSA"><P></A> <A NAME="def"> <H2>Mounting Files</H2> -HDF5 allows you to combine two or more HDF5 files in a manner similar to mounting -files in UNIX. The group structure and metadata from one file appear as though +HDF5 allows you to combine two or more HDF5 files in memory +in a manner similar to mounting files in UNIX. +The group structure and metadata from one file appear as though they exist in another file. The following steps are involved: <OL> <LI>Open the files. -<LI>Choose the "mount point" in the first file (parent). The "mount point" in - HDF5 is a group ( it can also be the root group ). +<LI>Choose the <strong>mount point</strong> in the first file + (the parent file). The mount point in + HDF5 is a group, which CANNOT be the root group. -<LI>Use the HDF5 API function H5Fmount to mount the second file (child) in - the first one. +<LI>Use the HDF5 routine <CODE>H5Fmount</CODE> / <CODE>h5fmount_f</CODE> + to mount the second file (the child file) in the first file. <LI>Work with the objects in the second file as if they were members of - the "mount point" group in the first file. The previous contents of - the "mount point" group are temporarily hidden. + the mount point group in the first file. The previous contents of + the mount point group are temporarily hidden. -<LI>Unmount the second file using the H5Funmount function when the work is done. +<LI>Unmount the second file using <CODE>H5Funmount</CODE> / + <CODE>h5funmount_f</CODE> when the work is done. </OL> <H2> Programming Example</H2> <A NAME="desc"> <H3><U>Description</U></H3> -In the following example we create one file with a group in it, and another -file with a dataset. Mounting is used to access the dataset from the second -file as a member of a group in the first file. The following picture -illustrates this concept. +In the following example, we create one file containing a group and +another file containing a dataset. +Mounting is used to access the dataset from the second +file as a member of a group in the first file. +The following figures illustrate this concept. <PRE> - 'FILE1' 'FILE2' + FILE1 FILE2 --------------------- -------------------- -! ! ! ! -! / ! ! / ! -! | ! ! | ! -! | ! ! | ! -! V ! ! V ! -! -------- ! ! ---------- ! -! ! Group ! ! ! ! Dataset! ! -! --------- ! ! ---------- ! -!------------------! !------------------! + -------------------- -------------------- + ! ! ! ! + ! / ! ! / ! + ! | ! ! | ! + ! | ! ! | ! + ! V ! ! V ! + ! -------- ! ! ---------- ! + ! ! Group ! ! ! ! Dataset! ! + ! --------- ! ! ---------- ! + !------------------! !------------------! </PRE> -After mounting the second file, 'FILE2', under the group in the file, 'FILE1', -the parent has the following structure: +After mounting <code>FILE2</code> under the group in <code>FILE1</code>, +the parent file has the following structure: <PRE> - 'FILE1' + FILE1 - -------------------- - ! ! - ! / ! - ! | ! - ! | ! - ! V ! - ! -------- ! - ! ! Group ! ! - ! --------- ! - ! | ! - ! | ! - ! V ! - ! ----------- ! - ! ! Dataset ! ! - ! !---------- ! - ! ! - !------------------! + -------------------- + ! ! + ! / ! + ! | ! + ! | ! + ! V ! + ! -------- ! + ! ! Group ! ! + ! --------- ! + ! | ! + ! | ! + ! V ! + ! ----------- ! + ! ! Dataset ! ! + ! !---------- ! + ! ! + !------------------! </PRE> -[ <A HREF="examples/h5_mount.c">Download h5_mount.c</A> ] -<PRE> -+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ - -#include<hdf5.h> - -#define FILE1 "mount1.h5" -#define FILE2 "mount2.h5" - -#define RANK 2 -#define NX 4 -#define NY 5 - -int main(void) -{ - - hid_t fid1, fid2, gid; /* Files and group identifiers */ - hid_t did, tid, sid; /* Dataset and datatype identifiers */ - - herr_t status; - hsize_t dims[] = {NX,NY}; /* Dataset dimensions */ - - int i, j; - int bm[NX][NY], bm_out[NX][NY]; /* Data buffers */ - - /* - * Initialization of buffer matrix "bm" - */ - for(i =0; i < NX; i++) { - for(j = 0; j < NY; j++) - bm[i][j] = i + j; - } - - /* - * Create first file and a group in it. - */ - fid1 = H5Fcreate(FILE1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - gid = H5Gcreate(fid1, "/G", 0); - - /* - * Close group and file - */ - H5Gclose(gid); - H5Fclose(fid1); - - /* - * Create second file and dataset "D" in it. - */ - fid2 = H5Fcreate(FILE2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - dims[0] = NX; - dims[1] = NY; - sid = H5Screate_simple(RANK, dims, NULL); - did = H5Dcreate(fid2, "D", H5T_NATIVE_INT, sid, H5P_DEFAULT); - - /* - * Write data to the dataset. - */ - status = H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, bm); - - /* - * Close all identifiers. - */ - H5Sclose(sid); - H5Dclose(did); - H5Fclose(fid2); - - /* - * Reopen both files - */ - fid1 = H5Fopen(FILE1, H5F_ACC_RDONLY, H5P_DEFAULT); - fid2 = H5Fopen(FILE2, H5F_ACC_RDONLY, H5P_DEFAULT); - - /* - * Mount second file under G in the first file. - */ - H5Fmount(fid1, "/G", fid2, H5P_DEFAULT); - - /* - * Access dataset D in the first file under /G/D name. - */ - did = H5Dopen(fid1,"/G/D"); - tid = H5Dget_type(did); - status = H5Dread(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, bm_out); - - /* - * Print out the data. - */ - for(i=0; i < NX; i++){ - for(j=0; j < NY; j++) - printf(" %d", bm_out[i][j]); - printf("\n"); - } - - /* - * Close all identifers - */ - H5Tclose(tid); - H5Dclose(did); - - /* - * Unmounting second file - */ - H5Funmount(fid1, "/G"); +[ <A HREF="examples/h5_mount.c">C program</A> ] + - <code>h5_mount.c</code><BR> +[ <A HREF="examples/mount.f90">FORTRAN program</A> ] + - <code>mountexample.f90</code> +<P> - /* - * Close both files - */ - H5Fclose(fid1); - H5Fclose(fid2); +<B>NOTE:</B> To download a tar file of the examples, including a Makefile, +please go to the <A HREF="references.html">References</A> page. - return 0; -} -++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ -</PRE> <A NAME="rem"> <H3><U>Remarks</U></H3> <UL> <LI> The first part of the program creates a group in one file and creates and writes a dataset to another file. <P> -<LI> Both files are reopened with the H5F_ACC_RDONLY access flag since no - objects will be modified. The child should be opened with H5F_ACC_RDWR if - the dataset is to be modified. +<LI> Both files are reopened and the second file is mounted in the first + using <CODE>H5Fmount</CODE> / <CODE>h5fmount_f</CODE>. + If no objects will be modified, the + files can be opened with <CODE>H5F_ACC_RDONLY</CODE> + (<CODE>H5F_ACC_RDONLY_F</CODE> in FORTRAN). + If the data is to be modified, the files should be opened with + <CODE>H5F_ACC_RDWR</CODE> (<CODE>H5F_ACC_RDWR_F</CODE> in FORTRAN). +<P> +<I><B>C:</B></I> +<pre> + herr_t H5Fmount (hid_t loc_id, const char *dsetname, + hid_t file_id, hid_t access_prp) +</pre> +<P> +<I><B>FORTRAN:</B></I> +<pre> + h5fmount_f (loc_id, dsetname, file_id, hdferr, access_prp) + + loc_id IN: INTEGER (HID_T) + dsetname IN: CHARACTER (LEN=*) + file_id IN: INTEGER (HID_T) + hdferr OUT: INTEGER + access_prp IN: INTEGER (HID_T), OPTIONAL + (Default value: H5P_DEFAULT_F) +</pre> <P> -<LI> The second file is mounted in the first using the H5Fmount function. -<PRE> - herr_t H5Fmount(hid_t loc_id, const char *name, hid_t file_id, hid_t plist_id) -</PRE> <UL> - <LI> The first two arguments specify the location of the "mount point" - ( a group ). In this example the "mount point" is a group "/G" in the - file specified by its handle <I>fid1</I>. Since group G is in the root - group of the first file, one can also use just "G" to identify it. + <LI> The <em>loc_id</em> and <em>dsetname</em> arguments + specify the location of the mount point. + In this example, the mount point is a group <code>/G</code> in the + specified file. Since the group <code>/G</code> is in the root + group of the first file, one can also use just <code>G</code> to + identify it. <P> - Below is a description of another scenario:<BR> - Suppose group G was a member of group D in the first file (<I>fid1</I>). - Then mounting point G can be specified in two different ways: + Below is a description of another scenario: + <p> + Suppose the group <code>G</code> were a member of + the group <code>H</code> in the first file. + Then the mount point <code>G</code> can be specified in + two different ways: <P> <UL> - <LI> <I>loc_id</I> is <I>fid1</I><BR> - <I>name</I> is "D/G" + <LI> <em>loc_id</em> is the file identifier for the first file.<BR> + <em>dsetname</em> is <code>H/G</code>. <P> - <LI> <I>loc_id</I> is an identifier of the group "D"<BR> - <I>name</I> is just "G" + <LI> <em>loc_id</em> is the identifier for the group <code>H</code>.<BR> + <em>dsetname</em> is <code>G</code>. </UL> <P> - <LI> The third argument is an identifier of the file which will be mounted. - Only one file can be mounted per "mount point". + <LI> The <em>file_id</em> argument is the identifier for the file + which will be mounted. + Only one file can be mounted per mount point. <P> - <LI> The fourth argument is an identifier of the property list to be used. - Currently, only the default property list, H5P_DEFAULT, can be used. + <LI> The <I>access_prp</I> argument is the identifier for the property list + to be used. Currently, only the default property list, + <CODE>H5P_DEFAULT</CODE>, can be used in C. + In FORTRAN, this argument can be omitted or + <CODE>H5P_DEFAULT_F</CODE> can be used. +<P> + <LI> The C function <CODE>H5Fmount</CODE> returns a non-negative + value if successful and a negative value otherwise. + With the FORTRAN routine, <CODE>h5fmount_f</CODE>, + the return value of the call is returned in <em>hdferr</em>: + 0 if successful and -1 otherwise. </UL> <P> -<LI> In this example we just read data from the dataset D. One can modify - data also. If the dataset is modified while the file is mounted, it becomes - modified in the original file too after the file is unmounted. +<LI>In this example, we only read data from the dataset <code>D</code>. + One can also modify data. + If the dataset is modified while the file is mounted, it is + modified in the original file after the file is unmounted. <P> -<LI> The file is unmounted with the H5Funmount function: -<PRE> - herr_t H5Funmount(hid_t loc_id, const char *name) -</PRE> - Arguments to this function specify the location of the "mount point". - In our example <I>loc_id</I> is an identifier of the first file, and - <I>name</I> is the name of group G, "/G". One could also use "G" - instead of "/G" since G is a member of the root group in the file - <I>fid1</I>. Notice that H5Funmount does not close files. They are closed - with the respective calls to the H5Fclose function. Closing the parent - automatically unmounts the child. +<LI> The file is unmounted with <CODE>H5Funmount</CODE> / +<CODE>h5funmount_f</CODE>: +<P> +<I><B>C:</B></I> +<pre> + herr_t H5Funmount (hid_t loc_id, const char *dsetname) +</pre> +<P> +<I><B>FORTRAN:</B></I> +<pre> + h5funmount_f (loc_id, dsetname, hdferr) + + loc_id IN: INTEGER (HID_T) + dsetname IN: CHARACTER (LEN=*) + hdferr OUT: INTEGER +</pre> +<P> +<ul> + <li>The <I>loc_id</I> and <I>dsetname</I> arguments specify the location + of the mount point. + In our example <I>loc_id</I> is the first file's file identifier + and <I>dsetname</I> is the name of group <code>/G</code>. +</ul> +<P> +<li>Note that <CODE>H5Funmount</CODE> / <CODE>h5funmount_f</CODE> + does not close files. Files are closed with the respective calls to + the <CODE>H5Fclose</CODE> / <CODE>h5fclose_f</CODE> function. +<P> +<li>Closing the parent file automatically unmounts the child file. <P> -<LI>The h5dump utility cannot display files in memory, therefore no output - of FILE1 after FILE2 was mounted is provided. +<LI>The <code>h5dump</code> utility cannot display files in memory. + Therefore, no output of <code>FILE1</code> after <code>FILE2</code> + was mounted is provided. </UL> </UL> @@ -291,8 +243,11 @@ int main(void) <!-- <A HREF="helpdesk.mail.html"> --> <A HREF="mailto:hdfhelp@ncsa.uiuc.edu"> hdfhelp@ncsa.uiuc.edu</A> -<BR> <H6>Last Modified: August 27, 1999</H6><BR> +<br> +Describes HDF5 Release 1.2.2, June 2000 +<BR> <H6>Last Modified: January 19, 2000</H6><BR> <!-- modified by Barbara Jones - bljones@ncsa.uiuc.edu --> +<!-- modified by Frank Baker - fbaker@ncsa.uiuc.edu --> </FONT> <BR> <!-- <A HREF="mailto:hdfhelp@ncsa.uiuc.edu"> --> |