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diff --git a/doc/html/Tutor/selectc.html b/doc/html/Tutor/selectc.html index e01d9db..4edef82 100644 --- a/doc/html/Tutor/selectc.html +++ b/doc/html/Tutor/selectc.html @@ -1,5 +1,5 @@ <HTML><HEAD> -<TITLE>HDF5 Tutorial - Selections using H5Sselect_elements and H5Scopy +<TITLE>HDF5 Tutorial - Selecting Individual Points and Copying a Dataspace </TITLE> </HEAD> @@ -13,7 +13,8 @@ width=78 height=27 alt="NCSA"><P></A> [ <A HREF="title.html"><I>HDF5 Tutorial Top</I></A> ] <H1> -<BIG><BIG><BIG><FONT COLOR="#c101cd">Selections using H5Sselect_elements and H5SCopy</FONT> +<BIG><BIG><BIG><FONT COLOR="#c101cd">Selecting Individual Points and Copying +a Dataspace</FONT> </BIG></BIG></BIG></H1> <hr noshade size=1> @@ -21,7 +22,7 @@ width=78 height=27 alt="NCSA"><P></A> <BODY> <H2>Contents:</H2> <UL> - <LI> <A HREF="#def">Selecting Independent Points and Copying a Dataspace</A> + <LI> <A HREF="#def">Description</A> <LI> Programming Example <UL> <LI> <A HREF="#desc">Description</A> @@ -31,197 +32,125 @@ width=78 height=27 alt="NCSA"><P></A> </UL> <HR> <A NAME="def"> -<H2>Selecting Independent Points and Copying a Dataspace</h2> -You can select independent points to read or write to in a -dataspace by use of the H5Sselect_elements function. +<H2>Description</h2> +You can select independent points to read from or write to in a +dataspace by use of the <CODE>H5Sselect_elements</CODE> / +<CODE>h5sselect_elements_f</CODE> function. <P> -The H5Scopy function allows you to make an exact copy of a dataspace, -which can help cut down on the number of function calls needed when +The <CODE>H5Scopy</CODE> / <CODE>h5scopy_f</CODE> function allows +you to make an exact copy of a dataspace. +This can reduce the number of function calls needed when selecting a dataspace. <P> <H2> Programming Example</H2> + <A NAME="desc"> <H3><U>Description</U></H3> -This example shows you how to use H5Sselect_elements to select individual -points in a dataset and how to use H5Scopy to make a copy of a dataspace. - -[ <A HREF="examples/h5_copy.c">Download h5_copy.c</A> ] -<PRE> -/***********************************************************************/ -/* */ -/* PROGRAM: h5_copy.c */ -/* PURPOSE: Shows how to use the H5SCOPY function. */ -/* DESCRIPTION: */ -/* This program creates two files, copy1.h5, and copy2.h5. */ -/* In copy1.h5, it creates a 3x4 dataset called 'Copy1', */ -/* and write 0's to this dataset. */ -/* In copy2.h5, it create a 3x4 dataset called 'Copy2', */ -/* and write 1's to this dataset. */ -/* It closes both files, reopens both files, selects two */ -/* points in copy1.h5 and writes values to them. Then it */ -/* does an H5Scopy from the first file to the second, and */ -/* writes the values to copy2.h5. It then closes the */ -/* files, reopens them, and prints the contents of the */ -/* two datasets. */ -/* */ -/***********************************************************************/ - -#include "hdf5.h" -#define FILE1 "copy1.h5" -#define FILE2 "copy2.h5" - -#define RANK 2 -#define DIM1 3 -#define DIM2 4 -#define NUMP 2 - -int main (void) -{ - hid_t file1, file2, dataset1, dataset2; - hid_t mid1, mid2, fid1, fid2; - hsize_t fdim[] = {DIM1, DIM2}; - hsize_t mdim[] = {DIM1, DIM2}; - hsize_t start[2], stride[2], count[2], block[2]; - int buf1[DIM1][DIM2]; - int buf2[DIM1][DIM2]; - int bufnew[DIM1][DIM2]; - int val[] = {53, 59}; - hsize_t marray[] = {2}; - hssize_t coord[NUMP][RANK]; - herr_t ret; - uint i, j; - -/***********************************************************************/ -/* */ -/* Create two files containing identical datasets. Write 0's to one */ -/* and 1's to the other. */ -/* */ -/***********************************************************************/ - - for ( i = 0; i < DIM1; i++ ) - for ( j = 0; j < DIM2; j++ ) - buf1[i][j] = 0; - - for ( i = 0; i < DIM1; i++ ) - for ( j = 0; j < DIM2; j++ ) - buf2[i][j] = 1; - - file1 = H5Fcreate(FILE1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - file2 = H5Fcreate(FILE2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); - - fid1 = H5Screate_simple (RANK, fdim, NULL); - fid2 = H5Screate_simple (RANK, fdim, NULL); - - dataset1 = H5Dcreate (file1, "Copy1", H5T_NATIVE_INT, fid1, H5P_DEFAULT); - dataset2 = H5Dcreate (file2, "Copy2", H5T_NATIVE_INT, fid2, H5P_DEFAULT); - - ret = H5Dwrite(dataset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf1); - ret = H5Dwrite(dataset2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf2); - - ret = H5Dclose (dataset1); - ret = H5Dclose (dataset2); - - ret = H5Sclose (fid1); - ret = H5Sclose (fid2); - - ret = H5Fclose (file1); - ret = H5Fclose (file2); - -/***********************************************************************/ -/* */ -/* Open the two files. Select two points in one file, write values to */ -/* those point locations, then do H5Scopy and write the values to the */ -/* other file. Close files. */ -/* */ -/***********************************************************************/ - - file1 = H5Fopen (FILE1, H5F_ACC_RDWR, H5P_DEFAULT); - file2 = H5Fopen (FILE2, H5F_ACC_RDWR, H5P_DEFAULT); - dataset1 = H5Dopen (file1, "Copy1"); - dataset2 = H5Dopen (file2, "Copy2"); - fid1 = H5Dget_space (dataset1); - mid1 = H5Screate_simple(1, marray, NULL); - coord[0][0] = 0; coord[0][1] = 3; - coord[1][0] = 0; coord[1][1] = 1; - - ret = H5Sselect_elements (fid1, H5S_SELECT_SET, NUMP, (const hssize_t **)coord); - - ret = H5Dwrite (dataset1, H5T_NATIVE_INT, mid1, fid1, H5P_DEFAULT, val); - - fid2 = H5Scopy (fid1); - - ret = H5Dwrite (dataset2, H5T_NATIVE_INT, mid1, fid2, H5P_DEFAULT, val); - - ret = H5Dclose (dataset1); - ret = H5Dclose (dataset2); - ret = H5Sclose (fid1); - ret = H5Sclose (fid2); - ret = H5Fclose (file1); - ret = H5Fclose (file2); - ret = H5Sclose (mid1); - -/***********************************************************************/ -/* */ -/* Open both files and print the contents of the datasets. */ -/* */ -/***********************************************************************/ - - file1 = H5Fopen (FILE1, H5F_ACC_RDWR, H5P_DEFAULT); - file2 = H5Fopen (FILE2, H5F_ACC_RDWR, H5P_DEFAULT); - dataset1 = H5Dopen (file1, "Copy1"); - dataset2 = H5Dopen (file2, "Copy2"); - - ret = H5Dread (dataset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, - H5P_DEFAULT, bufnew); - - printf ("\nDataset 'Copy1' in file 'copy1.h5' contains: \n"); - for (i=0;i<DIM1; i++) { - for (j=0;j<DIM2;j++) printf ("%3d ", bufnew[i][j]); - printf("\n"); - } - - printf ("\nDataset 'Copy2' in file 'copy2.h5' contains: \n"); - - ret = H5Dread (dataset2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, - H5P_DEFAULT, bufnew); - - for (i=0;i<DIM1; i++) { - for (j=0;j<DIM2;j++) printf ("%3d ", bufnew[i][j]); - printf("\n"); - } - ret = H5Dclose (dataset1); - ret = H5Dclose (dataset2); - ret = H5Fclose (file1); - ret = H5Fclose (file2); +This example shows how to use <CODE>H5Sselect_elements</CODE> / +<CODE>h5sselect_elements_f</CODE> +to select individual points in a dataset and how to use +<CODE>H5Scopy</CODE> / <CODE>h5scopy_f</CODE> +to make a copy of a dataspace. +<UL> +[ <A HREF="examples/h5_copy.c">C example</A> ] + - <code>h5_copy.c</code><BR> +[ <A HREF="examples/selectele.f90">FORTRAN example</A> ] + - <code>selectele.f90</code><BR> +[ <A HREF="examples/java/Copy.java">Java example</A> ] + - <code>Copy.java</code> +</UL> +<B>NOTE:</B> To download a tar file of the examples, including a Makefile, +please go to the <A HREF="references.html">References</A> page. -} -+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ -</PRE> <A NAME="rem"> <H3><U>Remarks</U></H3> <UL> -<LI>H5Sselect_elements selects array elements to be included in the -selection for a dataspace: -<PRE> - herr_t H5Sselect_elements (hid_t space_id, H5S_seloper_t op, - size_t num_elem, const hssize_t **coord ) -</PRE> +<LI><CODE>H5Sselect_elements</CODE> / <CODE>h5sselect_elements_f</CODE> +selects array elements to be +included in the selection for a dataspace: +<P> +<I><B>C</B></I>: +<pre> + herr_t H5Sselect_elements (hid_t space_id, H5S_seloper_t operator, + size_t num_elements, + const hssize_t **coord ) +</pre> +<P> +<I><B>FORTRAN</B></I>: +<pre> + h5sselect_elements_f (space_id, operator, num_elements, coord, hdferr) + + space_id IN: INTEGER(HID_T) + operator IN: INTEGER + num_elements IN: INTEGER + coord IN: INTEGER(HSSIZE_T), DIMENSION(*,*) + hdferr OUT: INTEGER +</pre> +<P> <UL> -<LI>The <I>space_id</I> parameter is the dataspace identifier.<BR> -<LI>The <I>op</I> parameter currently can only be set to H5S_SELECT_SET and -specifies to replace the existing selection with the parameters from this -call. -<LI>The <I>coord</I> array is a two-dimensional array of size 'dataspace rank' -by the number of elements to be selected, <I>num_elem</I>.<BR> +<LI>The <I>space_id</I> parameter is the dataspace identifier. +<P> +<LI>The <I>operator</I> parameter can be set to one of the following values: +<dir><DL> + <dt><CODE>H5S_SELECT_SET</CODE> (<CODE>H5S_SELECT_SET_F</CODE> in FORTRAN) + <dd>Replace the existing selection with the parameters from this call. + Overlapping blocks are not supported with this operator. + <dt><CODE>H5S_SELECT_OR</CODE> (<CODE>H5S_SELECT_OR_F</CODE> in FORTRAN) + <dd>Add the new selection to the existing selection. +</DL></dir> +<P> +<LI>The <I>coord</I> array is a two-dimensional array of size +<code><em>NUMP</em> x <em>RANK</em></code> in C +(<code><em>RANK</em> x <em>NUMP</em></code> in FORTRAN) +where <code><em>NUMP</em></code> is the number of selected points +and <code><em>RANK</em></code> is the rank of the dataset. +Note that these coordinates are 0-based in C and 1-based in FORTRAN. +<p> + Consider the non-zero elements of the following array: + <pre> + 0 59 0 53 + 0 0 0 0 + 0 0 1 0 </pre> + In C, the <em>coord</em> array selecting these points would be as follows: + <pre> + 0 1 + 0 3 + 2 2 </pre> + While in FORTRAN, the <em>coord</em> array would be as follows: + <pre> + 1 1 3 + 2 4 3 </pre> +<P> +<LI>In C, this function returns a non-negative value if successful and +a negative value otherwise. In FORTRAN, the value returned in <I>hdferr</I> +indicates whether it was successful (0) or not (-1). </UL> <P> -<LI>H5Scopy creates an exact copy of a dataspace: +<LI><CODE>H5Scopy</CODE> / <CODE>h5scopy_f</CODE> creates an exact copy of a dataspace: +<P> +<I><B>C</B></I>: + <PRE> - hid_t H5Scopy(hid_t space_id ) + hid_t H5Scopy (hid_t space_id) </PRE> +<I><B>FORTRAN</B></I>: +<PRE> + h5scopy_f (space_id, new_space_id, hdferr) + + space_id IN: INTEGER(HID_T) + new_space_id OUT: INTEGER(HID_T) + hdferr OUT: INTEGER +</PRE> +<P> <UL> <LI>The <I>space_id</I> parameter is the dataspace identifier to copy. +<P> +<LI>In C, the identifier to the dataspace's copy is returned if the +function is successful and a negative value is returned if not. In +FORTRAN, the new dataspace identifier is returned in <I>new_space_id</I> +and the return value is returned in <I>hdferr</I> ( 0 if successful and +-1 if not). </UL> </UL> </UL> @@ -231,42 +160,83 @@ by the number of elements to be selected, <I>num_elem</I>.<BR> <H3><U>File Contents</U></H3> Following is the DDL for <I>copy1.h5</I> and <I>copy2.h5</I>, as viewed with -the commands "h5dump copy1.h5" and "h5dump copy2.h5". +the following commands:<br> + +<code>h5dump copy1.h5</code> <br> + +<code>h5dump copy2.h5</code> + <P> -<B>Fig. S.1</B> <I>'copy1.h5' in DDL</I> +<HR> +<B><I><U>C</U></B></I>:<P> +<B>Fig. S.1a</B> <I><code>copy1.h5</code> in DDL</I> <PRE> -HDF5 "copy1.h5" { -GROUP "/" { - DATASET "Copy1" { - DATATYPE { H5T_STD_I32BE } - DATASPACE { SIMPLE ( 3, 4 ) / ( 3, 4 ) } - DATA { - 0, 59, 0, 53, - 0, 0, 0, 0, - 0, 0, 0, 0 + HDF5 "copy1.h5" { + GROUP "/" { + DATASET "Copy1" { + DATATYPE { H5T_STD_I32BE } + DATASPACE { SIMPLE ( 3, 4 ) / ( 3, 4 ) } + DATA { + 0, 59, 0, 53, + 0, 0, 0, 0, + 0, 0, 0, 0 + } } } -} -} + } </PRE> -<B>Fig. S.2</B> <I>'copy2.h5' in DDL</I> +<B>Fig. S.1b</B> <I><code>copy2.h5</code> in DDL</I> <PRE> -HDF5 "copy2.h5" { -GROUP "/" { - DATASET "Copy2" { - DATATYPE { H5T_STD_I32BE } - DATASPACE { SIMPLE ( 3, 4 ) / ( 3, 4 ) } - DATA { - 1, 59, 1, 53, - 1, 1, 1, 1, - 1, 1, 1, 1 + HDF5 "copy2.h5" { + GROUP "/" { + DATASET "Copy2" { + DATATYPE { H5T_STD_I32BE } + DATASPACE { SIMPLE ( 3, 4 ) / ( 3, 4 ) } + DATA { + 1, 59, 1, 53, + 1, 1, 1, 1, + 1, 1, 1, 1 + } } } -} -} - + } +</PRE> +<HR> +<I><B><U>FORTRAN</U></B></I>:<P> +<B>Fig. S.2a</B> <I><code>copy1.h5</code> in DDL</I> +<PRE> + HDF5 "copy1.h5" { + GROUP "/" { + DATASET "Copy1" { + DATATYPE { H5T_STD_I32BE } + DATASPACE { SIMPLE ( 4, 3 ) / ( 4, 3 ) } + DATA { + 0, 0, 0, + 53, 0, 0, + 0, 0, 0, + 59, 0, 0 + } + } + } + } +</PRE> +<B>Fig. S.2b</B> <I><code>copy2.h5</code> in DDL</I> +<PRE> + HDF5 "copy2.h5" { + GROUP "/" { + DATASET "Copy2" { + DATATYPE { H5T_STD_I32BE } + DATASPACE { SIMPLE ( 4, 3 ) / ( 4, 3 ) } + DATA { + 1, 1, 1, + 53, 1, 1, + 1, 1, 1, + 59, 1, 1 + } + } + } + } </PRE> - <!-- BEGIN FOOTER INFO --> @@ -283,8 +253,11 @@ GROUP "/" { <!-- <A HREF="helpdesk.mail.html"> --> <A HREF="mailto:hdfhelp@ncsa.uiuc.edu"> hdfhelp@ncsa.uiuc.edu</A> -<BR> <H6>Last Modified: August 27, 1999</H6><BR> +<br> +Describes HDF5 Release 1.2.2, June 2000 +<BR> <H6>Last Modified: April 5, 2000</H6><BR> <!-- modified by Barbara Jones - bljones@ncsa.uiuc.edu --> +<!-- modified by Frank Baker - fbaker@ncsa.uiuc.edu --> </FONT> <BR> <!-- <A HREF="mailto:hdfhelp@ncsa.uiuc.edu"> --> |