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Diffstat (limited to 'examples/h5_vds.c')
| -rw-r--r-- | examples/h5_vds.c | 257 |
1 files changed, 257 insertions, 0 deletions
diff --git a/examples/h5_vds.c b/examples/h5_vds.c new file mode 100644 index 0000000..79a3f01 --- /dev/null +++ b/examples/h5_vds.c @@ -0,0 +1,257 @@ +/************************************************************ + + This example illustrates the concept of virtual dataset. + The program creates three 1-dim source datasets and writes + data to them. Then it creates a 2-dim virtual dataset and + maps the first three rows of the virtual dataset to the data + in the source datasets. Elements of a row are mapped to all + elements of the corresponding source dataset. + The fourth row is not mapped and will be filled with the fill + values when virtual dataset is read back. + + The program closes all datasets, and then reopens the virtual + dataset, and finds and prints its creation properties. + Then it reads the values. + + This file is intended for use with HDF5 Library version 1.10 + + ************************************************************/ +/* EIP Add link to the picture */ + +#include "hdf5.h" +#include <stdio.h> +#include <stdlib.h> + +#define FILE "vds.h5" +#define DATASET "VDS" +#define VDSDIM1 6 +#define VDSDIM0 4 +#define DIM0 6 +#define RANK1 1 +#define RANK2 2 + +const char *SRC_FILE[] = { + "a.h5", + "b.h5", + "c.h5" +}; + +const char *SRC_DATASET[] = { + "A", + "B", + "C" +}; + +int +main (void) +{ + hid_t file, space, src_space, vspace, dset; /* Handles */ + hid_t dcpl; + herr_t status; + hsize_t vdsdims[2] = {VDSDIM0, VDSDIM1}, /* Virtual datasets dimension */ + dims[1] = {DIM0}, /* Source datasets dimensions */ + start[2], /* Hyperslab parameters */ + stride[2], + count[2], + block[2]; + hsize_t start_out[2], + stride_out[2], + count_out[2], + block_out[2]; + int wdata[DIM0], /* Write buffer for source dataset */ + rdata[VDSDIM0][VDSDIM1], /* Read buffer for virtual dataset */ + i, j, k, l; + int fill_value = -1; /* Fill value for VDS */ + H5D_layout_t layout; /* Storage layout */ + size_t num_map; /* Number of mappings */ + ssize_t len; /* Length of the string; also a return value */ + char *filename; + char *dsetname; + hsize_t nblocks; + hsize_t *buf; /* Buffer to hold hyperslab coordinates */ + + /* + * Create source files and datasets. This step is optional. + */ + for (i=0; i < 3; i++) { + /* + * Initialize data for i-th source dataset. + */ + for (j = 0; j < DIM0; j++) wdata[j] = i+1; + + /* + * Create the source files and datasets. Write data to each dataset and + * close all resources. + */ + + file = H5Fcreate (SRC_FILE[i], H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + space = H5Screate_simple (RANK1, dims, NULL); + dset = H5Dcreate (file, SRC_DATASET[i], H5T_NATIVE_INT, space, H5P_DEFAULT, + H5P_DEFAULT, H5P_DEFAULT); + status = H5Dwrite (dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, + wdata); + status = H5Sclose (space); + status = H5Dclose (dset); + status = H5Fclose (file); + } + + /* Create file in which virtual dataset will be stored. */ + file = H5Fcreate (FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + + /* Create VDS dataspace. */ + space = H5Screate_simple (RANK2, vdsdims, NULL); + + /* Set VDS creation property. */ + dcpl = H5Pcreate (H5P_DATASET_CREATE); + status = H5Pset_fill_value (dcpl, H5T_NATIVE_INT, &fill_value); + + /* Initialize hyperslab values. */ + start[0] = 0; + start[1] = 0; + count[0] = 1; + count[1] = 1; + block[0] = 1; + block[1] = VDSDIM1; + + /* + * Build the mappings. + * Selections in the source datasets are H5S_ALL. + * In the virtual dataset we select the first, the second and the third rows + * and map each row to the data in the corresponding source dataset. + */ + src_space = H5Screate_simple (RANK1, dims, NULL); + for (i = 0; i < 3; i++) { + start[0] = (hsize_t)i; + /* Select i-th row in the virtual dataset; selection in the source datasets is the same. */ + status = H5Sselect_hyperslab (space, H5S_SELECT_SET, start, NULL, count, block); + status = H5Pset_virtual (dcpl, space, SRC_FILE[i], SRC_DATASET[i], src_space); + } + + /* Create a virtual dataset. */ + dset = H5Dcreate (file, DATASET, H5T_NATIVE_INT, space, H5P_DEFAULT, + dcpl, H5P_DEFAULT); + status = H5Sclose (space); + status = H5Sclose (src_space); + status = H5Dclose (dset); + status = H5Fclose (file); + + /* + * Now we begin the read section of this example. + */ + + /* + * Open the file and virtual dataset. + */ + file = H5Fopen (FILE, H5F_ACC_RDONLY, H5P_DEFAULT); + dset = H5Dopen (file, DATASET, H5P_DEFAULT); + + /* + * Get creation property list and mapping properties. + */ + dcpl = H5Dget_create_plist (dset); + + /* + * Get storage layout. + */ + layout = H5Pget_layout (dcpl); + if (H5D_VIRTUAL == layout) + printf(" Dataset has a virtual layout \n"); + else + printf(" Wrong layout found \n"); + + /* + * Find the number of mappings. + */ + status = H5Pget_virtual_count (dcpl, &num_map); + printf(" Number of mappings is %lu\n", (unsigned long)num_map); + + /* + * Get mapping parameters for each mapping. + */ + for (i = 0; i < (int)num_map; i++) { + printf(" Mapping %d \n", i); + printf(" Selection in the virtual dataset "); + /* Get selection in the virttual dataset */ + vspace = H5Pget_virtual_vspace (dcpl, (size_t)i); + + /* Make sure that this is a hyperslab selection and then print information. */ + if (H5Sget_select_type(vspace) == H5S_SEL_HYPERSLABS) { + nblocks = H5Sget_select_hyper_nblocks (vspace); + buf = (hsize_t *)malloc(sizeof(hsize_t)*2*RANK2*nblocks); + status = H5Sget_select_hyper_blocklist (vspace, (hsize_t)0, nblocks, buf); + for (l=0; l<nblocks; l++) { + printf("("); + for (k=0; k<RANK2-1; k++) + printf("%d,", (int)buf[k]); + printf("%d ) - (", (int)buf[k]); + for (k=0; k<RANK2-1; k++) + printf("%d,", (int)buf[RANK2+k]); + printf("%d)\n", (int)buf[RANK2+k]); + } + /* We also can use new APIs to get start, stride, count and block */ + if (H5Sis_regular_hyperslab(vspace)) { + status = H5Sget_regular_hyperslab (vspace, start_out, stride_out, count_out, block_out); + printf(" start = [%llu, %llu] \n", (unsigned long long)start_out[0], (unsigned long long)start_out[1]); + printf(" stride = [%llu, %llu] \n", (unsigned long long)stride_out[0], (unsigned long long)stride_out[1]); + printf(" count = [%llu, %llu] \n", (unsigned long long)count_out[0], (unsigned long long)count_out[1]); + printf(" block = [%llu, %llu] \n", (unsigned long long)block_out[0], (unsigned long long)block_out[1]); + } + } + /* Get source file name. */ + len = H5Pget_virtual_filename (dcpl, (size_t)i, NULL, 0); + filename = (char *)malloc((size_t)len*sizeof(char)+1); + H5Pget_virtual_filename (dcpl, (size_t)i, filename, len+1); + printf(" Source filename %s\n", filename); + + /* Get source dataset name. */ + len = H5Pget_virtual_dsetname (dcpl, (size_t)i, NULL, 0); + dsetname = (char *)malloc((size_t)len*sizeof(char)+1); + H5Pget_virtual_dsetname (dcpl, (size_t)i, dsetname, len+1); + printf(" Source dataset name %s\n", dsetname); + + /* Get selection in the source dataset. */ + printf(" Selection in the source dataset "); + src_space = H5Pget_virtual_srcspace (dcpl, (size_t)i); + + /* Make sure it is ALL selection and then print the coordinates. */ + if(H5Sget_select_type(src_space) == H5S_SEL_ALL) { + printf("(0) - (%d) \n", DIM0-1); + } + H5Sclose(vspace); + H5Sclose(src_space); + free(filename); + free(dsetname); + free(buf); + } + /* EIP Initialize read buffer with -2 since fille values for VDS are not implemented yet */ + for (i=0; i<VDSDIM0; i++) { + for (j=0; j<VDSDIM1; j++) + rdata[i][j] = -2; + } + + /* + * Read the data using the default properties. + */ + status = H5Dread (dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, + rdata[0]); + + /* + * Output the data to the screen. + */ + printf (" VDS Data:\n"); + for (i=0; i<VDSDIM0; i++) { + printf (" ["); + for (j=0; j<VDSDIM1; j++) + printf (" %3d", rdata[i][j]); + printf ("]\n"); + } + /* + * Close and release resources. + */ + status = H5Pclose (dcpl); + status = H5Dclose (dset); + status = H5Fclose (file); + + return 0; +} + |