diff options
Diffstat (limited to 'fortran/src')
| -rw-r--r-- | fortran/src/H5Af.c | 4 | ||||
| -rw-r--r-- | fortran/src/H5Gf.c | 4 | ||||
| -rw-r--r-- | fortran/src/H5Lf.c | 28 | ||||
| -rw-r--r-- | fortran/src/H5Lff.F90 | 38 | ||||
| -rw-r--r-- | fortran/src/H5Of.c | 109 | ||||
| -rw-r--r-- | fortran/src/H5Off.F90 | 168 | ||||
| -rw-r--r-- | fortran/src/H5VLff.F90 | 56 | ||||
| -rw-r--r-- | fortran/src/H5_f.c | 301 | ||||
| -rw-r--r-- | fortran/src/H5f90.h | 3 | ||||
| -rw-r--r-- | fortran/src/H5f90global.F90 | 7 | ||||
| -rw-r--r-- | fortran/src/H5f90i.h | 3 | ||||
| -rw-r--r-- | fortran/src/H5f90proto.h | 34 | ||||
| -rw-r--r-- | fortran/src/H5match_types.c | 10 | ||||
| -rw-r--r-- | fortran/src/README | 20 | ||||
| -rw-r--r-- | fortran/src/hdf5_fortrandll.def.in | 4 |
15 files changed, 462 insertions, 327 deletions
diff --git a/fortran/src/H5Af.c b/fortran/src/H5Af.c index 31a18fc..5e5bcc0 100644 --- a/fortran/src/H5Af.c +++ b/fortran/src/H5Af.c @@ -137,13 +137,13 @@ int_f h5aget_num_attrs_c (hid_t_f *obj_id, int_f *attr_num) /******/ { - H5O_info_t oinfo; /* Object info */ + H5O_info2_t oinfo; /* Object info */ int_f ret_value = 0; /* Return value */ /* * Call H5Oget_info function. */ - if(H5Oget_info2((hid_t)*obj_id, &oinfo, H5O_INFO_NUM_ATTRS) < 0) + if(H5Oget_info3((hid_t)*obj_id, &oinfo, H5O_INFO_NUM_ATTRS) < 0) HGOTO_DONE(FAIL); /* Set number of attributes */ diff --git a/fortran/src/H5Gf.c b/fortran/src/H5Gf.c index def67e1..770752d 100644 --- a/fortran/src/H5Gf.c +++ b/fortran/src/H5Gf.c @@ -170,7 +170,7 @@ h5gget_obj_info_idx_c(hid_t_f *loc_id, _fcd name, int_f *namelen, int_f *idx, _fcd obj_name, int_f *obj_namelen, int_f *obj_type) /******/ { - H5O_info_t oinfo; + H5O_info2_t oinfo; hid_t c_loc_id = (hid_t)*loc_id; char *c_name = NULL; size_t c_obj_namelen; @@ -200,7 +200,7 @@ h5gget_obj_info_idx_c(hid_t_f *loc_id, _fcd name, int_f *namelen, int_f *idx, /* Query the object's information */ if(H5Lget_name_by_idx(gid, ".", H5_INDEX_NAME, H5_ITER_INC, c_idx, c_obj_name, c_obj_namelen, H5P_DEFAULT) < 0) goto DONE; - if(H5Oget_info_by_idx2(gid, ".", H5_INDEX_NAME, H5_ITER_INC, c_idx, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) + if(H5Oget_info_by_idx3(gid, ".", H5_INDEX_NAME, H5_ITER_INC, c_idx, &oinfo, H5O_INFO_BASIC, H5P_DEFAULT) < 0) goto DONE; /* XXX: Switch from using H5Gget_objtype_by_idx() means that this routine won't diff --git a/fortran/src/H5Lf.c b/fortran/src/H5Lf.c index 31fedfd..b5ff7f2 100644 --- a/fortran/src/H5Lf.c +++ b/fortran/src/H5Lf.c @@ -441,7 +441,7 @@ done: * H5L_LINK_SOFT_F - Soft link * H5L_LINK_EXTERNAL_F - External link * H5L_LINK_ERROR_F - Error - * address - If the link is a hard link, address specifies the file address that the link points to + * token - If the link is a hard link, token specifies the token for the object that the link points to * val_size - If the link is a symbolic link, val_size will be the length of the link value * * RETURNS @@ -456,13 +456,12 @@ done: int_f h5lget_info_c(hid_t_f *link_loc_id, _fcd link_name, size_t_f *link_namelen, int_f *cset, int_f *corder, int_f *corder_valid, int_f *link_type, - haddr_t_f *address, size_t_f *val_size, - hid_t_f *lapl_id) + H5O_token_t *token, size_t_f *val_size, hid_t_f *lapl_id) /******/ { char *c_link_name = NULL; /* Buffer to hold C string */ int_f ret_value = 0; /* Return value */ - H5L_info_t link_buff; + H5L_info2_t link_buff; /* * Convert FORTRAN name to C name @@ -473,7 +472,7 @@ h5lget_info_c(hid_t_f *link_loc_id, _fcd link_name, size_t_f *link_namelen, /* * Call H5Linfo function. */ - if(H5Lget_info((hid_t)*link_loc_id, c_link_name, &link_buff, (hid_t)*lapl_id) < 0) + if(H5Lget_info2((hid_t)*link_loc_id, c_link_name, &link_buff, (hid_t)*lapl_id) < 0) HGOTO_DONE(FAIL); /* Unpack the structure */ @@ -482,7 +481,7 @@ h5lget_info_c(hid_t_f *link_loc_id, _fcd link_name, size_t_f *link_namelen, *corder_valid = 0; if(link_buff.corder_valid > 0) *corder_valid = 1; *link_type = (int_f)link_buff.type; - *address = (haddr_t_f)link_buff.u.address; + *token = link_buff.u.token; *val_size = (size_t_f)link_buff.u.val_size; done: @@ -525,14 +524,15 @@ done: int_f h5lget_info_by_idx_c(hid_t_f *loc_id, _fcd group_name, size_t_f *group_namelen, int_f *index_field, int_f *order, hsize_t_f *n, - int_f *link_type, int_f *corder_valid, int_f *corder, int_f *cset, haddr_t_f *address, size_t_f *val_size, hid_t_f *lapl_id) + int_f *link_type, int_f *corder_valid, int_f *corder, + int_f *cset, H5O_token_t *token, size_t_f *val_size, hid_t_f *lapl_id) /******/ { char *c_group_name = NULL; /* Buffer to hold C string */ H5_index_t c_index_field; H5_iter_order_t c_order; int_f ret_value = 0; /* Return value */ - H5L_info_t link_buff; + H5L_info2_t link_buff; /* * Convert FORTRAN name to C name @@ -545,7 +545,7 @@ h5lget_info_by_idx_c(hid_t_f *loc_id, _fcd group_name, size_t_f *group_namelen, /* * Call H5Linfo_by_idx function. */ - if(H5Lget_info_by_idx((hid_t)*loc_id, c_group_name, c_index_field, c_order, (hsize_t)*n, + if(H5Lget_info_by_idx2((hid_t)*loc_id, c_group_name, c_index_field, c_order, (hsize_t)*n, &link_buff, (hid_t)*lapl_id) < 0) HGOTO_DONE(FAIL); @@ -557,7 +557,7 @@ h5lget_info_by_idx_c(hid_t_f *loc_id, _fcd group_name, size_t_f *group_namelen, *corder = (int_f)link_buff.corder; *cset = (int_f)link_buff.cset; *link_type = (int_f)link_buff.type; - *address = (haddr_t_f)link_buff.u.address; + *token = link_buff.u.token; *val_size = (size_t_f)link_buff.u.val_size; done: @@ -988,7 +988,7 @@ done: * SOURCE */ int_f -h5literate_c(hid_t_f *group_id, int_f *index_type, int_f *order, hsize_t_f *idx, H5L_iterate_t op, void *op_data ) +h5literate_c(hid_t_f *group_id, int_f *index_type, int_f *order, hsize_t_f *idx, H5L_iterate2_t op, void *op_data ) /******/ { int_f ret_value = -1; /* Return value */ @@ -1001,7 +1001,7 @@ h5literate_c(hid_t_f *group_id, int_f *index_type, int_f *order, hsize_t_f *idx, * Call H5Linterate */ - func_ret_value = H5Literate( (hid_t)*group_id, (H5_index_t)*index_type, (H5_iter_order_t)*order, &idx_c, op, op_data); + func_ret_value = H5Literate2( (hid_t)*group_id, (H5_index_t)*index_type, (H5_iter_order_t)*order, &idx_c, op, op_data); ret_value = (int_f)func_ret_value; *idx = (hsize_t_f)idx_c; @@ -1038,7 +1038,7 @@ h5literate_c(hid_t_f *group_id, int_f *index_type, int_f *order, hsize_t_f *idx, * SOURCE */ int_f -h5literate_by_name_c(hid_t_f *loc_id, _fcd name, size_t_f *namelen, int_f *index_type, int_f *order, hsize_t_f *idx, H5L_iterate_t op, void *op_data, hid_t_f *lapl_id) +h5literate_by_name_c(hid_t_f *loc_id, _fcd name, size_t_f *namelen, int_f *index_type, int_f *order, hsize_t_f *idx, H5L_iterate2_t op, void *op_data, hid_t_f *lapl_id) /******/ { int_f ret_value = -1; /* Return value */ @@ -1058,7 +1058,7 @@ h5literate_by_name_c(hid_t_f *loc_id, _fcd name, size_t_f *namelen, int_f *index * Call H5Linterate */ - func_ret_value = H5Literate_by_name((hid_t)*loc_id, c_name,(H5_index_t)*index_type,(H5_iter_order_t)*order,&idx_c,op,op_data,(hid_t)*lapl_id); + func_ret_value = H5Literate_by_name2((hid_t)*loc_id, c_name,(H5_index_t)*index_type,(H5_iter_order_t)*order,&idx_c,op,op_data,(hid_t)*lapl_id); ret_value = (int_f)func_ret_value; *idx = (hsize_t_f)idx_c; diff --git a/fortran/src/H5Lff.F90 b/fortran/src/H5Lff.F90 index d5bb1d1..f672547 100644 --- a/fortran/src/H5Lff.F90 +++ b/fortran/src/H5Lff.F90 @@ -46,7 +46,7 @@ MODULE H5L ! Fortran2003 Derived Type: ! TYPE, bind(c) :: union_t - INTEGER(haddr_t) :: address + TYPE(H5O_TOKEN_T_F) :: token INTEGER(size_t) :: val_size END TYPE union_t @@ -604,7 +604,7 @@ CONTAINS ! H5L_TYPE_SOFT_F - Soft link ! H5L_TYPE_EXTERNAL_F - External link ! H5L_TYPE_ERROR_ F - Error -! address - If the link is a hard link, address specifies the file address that the link points to +! token - If the link is a hard link, token specifies the object token that the link points to ! val_size - If the link is a symbolic link, val_size will be the length of the link value, e.g., ! the length of the name of the pointed-to object with a null terminator. ! hdferr - Returns 0 if successful and -1 if fails @@ -625,7 +625,7 @@ CONTAINS ! ! SOURCE SUBROUTINE h5lget_info_f(link_loc_id, link_name, & - cset, corder, f_corder_valid, link_type, address, val_size, & + cset, corder, f_corder_valid, link_type, token, val_size, & hdferr, lapl_id) IMPLICIT NONE @@ -641,7 +641,7 @@ CONTAINS ! H5L_TYPE_SOFT_F - Soft link ! H5L_TYPE_EXTERNAL_F - External link ! H5L_TYPE_ERROR _F - Error - INTEGER(HADDR_T), INTENT(OUT) :: address ! If the link is a hard link, address specifies the file address that the link points to + TYPE(H5O_TOKEN_T_F), INTENT(OUT), TARGET :: token ! If the link is a hard link, token specifies the object token that the link points to INTEGER(SIZE_T), INTENT(OUT) :: val_size ! If the link is a symbolic link, val_size will be the length of the link value, e.g., ! the length of the name of the pointed-to object with a null terminator. INTEGER, INTENT(OUT) :: hdferr ! Error code: @@ -654,17 +654,17 @@ CONTAINS INTERFACE INTEGER FUNCTION h5lget_info_c(link_loc_id, link_name, link_namelen, & - cset, corder, corder_valid, link_type, address, val_size, & + cset, corder, corder_valid, link_type, token, val_size, & lapl_id_default) BIND(C,NAME='h5lget_info_c') IMPORT :: c_char - IMPORT :: HID_T, SIZE_T, HADDR_T + IMPORT :: HID_T, SIZE_T, H5O_TOKEN_T_F IMPLICIT NONE INTEGER(HID_T), INTENT(IN) :: link_loc_id CHARACTER(KIND=C_CHAR), DIMENSION(*), INTENT(IN) :: link_name INTEGER, INTENT(OUT) :: cset INTEGER, INTENT(OUT) :: corder INTEGER, INTENT(OUT) :: link_type - INTEGER(HADDR_T), INTENT(OUT) :: address + TYPE(H5O_TOKEN_T_F), INTENT(OUT) :: token INTEGER(SIZE_T), INTENT(OUT) :: val_size INTEGER(HID_T) :: lapl_id_default INTEGER(SIZE_T) :: link_namelen @@ -677,10 +677,8 @@ CONTAINS lapl_id_default = H5P_DEFAULT_F IF(PRESENT(lapl_id)) lapl_id_default = lapl_id - hdferr = h5lget_info_c(link_loc_id, link_name, link_namelen, & - cset, corder, corder_valid, link_type, & - address, val_size, & - lapl_id_default) + hdferr = h5lget_info_c(link_loc_id, link_name, link_namelen, cset, & + corder, corder_valid, link_type, token, val_size, lapl_id_default) f_corder_valid =.FALSE. IF(corder_valid .EQ. 1) f_corder_valid =.TRUE. @@ -708,8 +706,8 @@ CONTAINS ! corder_valid - Indicates whether the creation order data is valid for this attribute ! corder - Is a positive integer containing the creation order of the attribute ! cset - Indicates the character set used for the attribute’s name -! address - If the link is a hard link, address specifies the file address that the link points to -! val_size - If the link is a symbolic link, val_size will be the length of the link value, e.g., +! token - If the link is a hard link, token specifies the object token that the link points to +! val_size - If the link is a symbolic link, val_size will be the length of the link value, e.g., ! the length of the name of the pointed-to object with a null terminator. ! hdferr - Returns 0 if successful and -1 if fails ! @@ -729,7 +727,7 @@ CONTAINS ! ! SOURCE SUBROUTINE h5lget_info_by_idx_f(loc_id, group_name, index_field, order, n, & - link_type, f_corder_valid, corder, cset, address, val_size, hdferr, lapl_id) + link_type, f_corder_valid, corder, cset, token, val_size, hdferr, lapl_id) IMPLICIT NONE INTEGER(HID_T), INTENT(IN) :: loc_id ! File or group identifier specifying location of subject group CHARACTER(LEN=*), INTENT(IN) :: group_name ! Name of subject group @@ -752,7 +750,7 @@ CONTAINS LOGICAL, INTENT(OUT) :: f_corder_valid ! Indicates whether the creation order data is valid for this attribute INTEGER, INTENT(OUT) :: corder ! Is a positive integer containing the creation order of the attribute INTEGER, INTENT(OUT) :: cset ! Indicates the character set used for the attribute’s name - INTEGER(HADDR_T), INTENT(OUT) :: address ! If the link is a hard link, address specifies the file address that the link points to + TYPE(H5O_TOKEN_T_F), INTENT(OUT), TARGET :: token ! If the link is a hard link, token specifies the object token that the link points to INTEGER(SIZE_T), INTENT(OUT) :: val_size ! If the link is a symbolic link, val_size will be the length of the link value, e.g., ! the length of the name of the pointed-to object with a null terminator. INTEGER, INTENT(OUT) :: hdferr ! Error code: @@ -767,10 +765,10 @@ CONTAINS ! INTERFACE INTEGER FUNCTION h5lget_info_by_idx_c(loc_id, group_name, group_namelen, index_field, order, n, & - link_type, corder_valid, corder, cset, address, val_size, lapl_id_default) & + link_type, corder_valid, corder, cset, token, val_size, lapl_id_default) & BIND(C,NAME='h5lget_info_by_idx_c') IMPORT :: c_char - IMPORT :: HID_T, SIZE_T, HSIZE_T, HADDR_T + IMPORT :: HID_T, SIZE_T, HSIZE_T, H5O_TOKEN_T_F IMPLICIT NONE INTEGER(HID_T), INTENT(IN) :: loc_id CHARACTER(KIND=C_CHAR), DIMENSION(*), INTENT(IN) :: group_name @@ -779,10 +777,10 @@ CONTAINS INTEGER, INTENT(IN) :: order INTEGER(HSIZE_T), INTENT(IN) :: n INTEGER, INTENT(OUT) :: link_type - INTEGER :: corder_valid + INTEGER :: corder_valid INTEGER, INTENT(OUT) :: corder INTEGER, INTENT(OUT) :: cset - INTEGER(HADDR_T), INTENT(OUT) :: address + TYPE(H5O_TOKEN_T_F), INTENT(OUT) :: token INTEGER(SIZE_T), INTENT(OUT) :: val_size INTEGER(HID_T) :: lapl_id_default END FUNCTION h5lget_info_by_idx_c @@ -794,7 +792,7 @@ CONTAINS IF(PRESENT(lapl_id)) lapl_id_default = lapl_id hdferr = h5lget_info_by_idx_c(loc_id, group_name, group_namelen, index_field, order, n, & - link_type, corder_valid, corder, cset, address, val_size, lapl_id_default) + link_type, corder_valid, corder, cset, token, val_size, lapl_id_default) f_corder_valid =.FALSE. IF (corder_valid .EQ. 1) f_corder_valid =.TRUE. diff --git a/fortran/src/H5Of.c b/fortran/src/H5Of.c index 08305ea..9780814 100644 --- a/fortran/src/H5Of.c +++ b/fortran/src/H5Of.c @@ -22,10 +22,10 @@ #include "H5f90.h" #include "H5Eprivate.h" int_f -fill_h5o_info_t_f(H5O_info_t Oinfo, H5O_info_t_f *object_info); +fill_h5o_info_t_f(H5O_info2_t Oinfo, H5O_info_t_f *object_info); int_f -fill_h5o_info_t_f(H5O_info_t Oinfo, H5O_info_t_f *object_info) { +fill_h5o_info_t_f(H5O_info2_t Oinfo, H5O_info_t_f *object_info) { /* This function does not used the field parameter because we want * this function to fill the unfilled fields with C's default values. @@ -34,7 +34,7 @@ fill_h5o_info_t_f(H5O_info_t Oinfo, H5O_info_t_f *object_info) { struct tm *ts; object_info->fileno = Oinfo.fileno; - object_info->addr = (haddr_t_f)Oinfo.addr; + object_info->token = Oinfo.token; object_info->type = (int_f)Oinfo.type; object_info->rc = (int_f)Oinfo.rc; @@ -85,24 +85,6 @@ fill_h5o_info_t_f(H5O_info_t Oinfo, H5O_info_t_f *object_info) { object_info->num_attrs = (hsize_t_f)Oinfo.num_attrs; - object_info->hdr.version = (int_f)Oinfo.hdr.version; - object_info->hdr.nmesgs = (int_f)Oinfo.hdr.nmesgs; - object_info->hdr.nchunks = (int_f)Oinfo.hdr.nchunks; - object_info->hdr.flags = (int_f)Oinfo.hdr.flags; - - object_info->hdr.space.total = (hsize_t_f)Oinfo.hdr.space.total; - object_info->hdr.space.meta = (hsize_t_f)Oinfo.hdr.space.meta; - object_info->hdr.space.mesg = (hsize_t_f)Oinfo.hdr.space.mesg; - object_info->hdr.space.free = (hsize_t_f)Oinfo.hdr.space.free; - - object_info->hdr.mesg.present = Oinfo.hdr.mesg.present; - object_info->hdr.mesg.shared = Oinfo.hdr.mesg.shared; - - object_info->meta_size.obj.index_size = (hsize_t_f)Oinfo.meta_size.obj.index_size; - object_info->meta_size.obj.heap_size = (hsize_t_f)Oinfo.meta_size.obj.heap_size; - object_info->meta_size.attr.index_size = (hsize_t_f)Oinfo.meta_size.attr.index_size; - object_info->meta_size.attr.heap_size = (hsize_t_f)Oinfo.meta_size.attr.heap_size; - return 0; } @@ -248,34 +230,35 @@ h5oclose_c ( hid_t_f *object_id ) * SOURCE */ int_f -h5ovisit_c(hid_t_f *group_id, int_f *index_type, int_f *order, H5O_iterate_t op, void *op_data, int_f *fields ) +h5ovisit_c(hid_t_f *group_id, int_f *index_type, int_f *order, H5O_iterate2_t op, + void *op_data, int_f *fields ) /******/ { int_f ret_value = -1; /* Return value */ herr_t func_ret_value; /* H5Linterate return value */ /* - * Call H5Ovisit2 + * Call H5Ovisit */ - func_ret_value = H5Ovisit2( (hid_t)*group_id, (H5_index_t)*index_type, (H5_iter_order_t)*order, op, op_data, (unsigned)*fields); + func_ret_value = H5Ovisit3( (hid_t)*group_id, (H5_index_t)*index_type, (H5_iter_order_t)*order, op, op_data, (unsigned)*fields); ret_value = (int_f)func_ret_value; return ret_value; } -/****if* H5Of/h5oopen_by_addr_c +/****if* H5Of/h5oopen_by_token_c * NAME - * h5oopen_by_addr_c + * h5oopen_by_token_c * PURPOSE - * Calls H5open_by_addr + * Calls H5open_by_token * INPUTS - * loc_id - File or group identifier - * addr - Object’s address in the file + * loc_id - File or group identifier + * token - Object’s token in the file * * OUTPUTS - * obj_id - Dataset identifier + * obj_id - Object identifier * * RETURNS * 0 on success, -1 on failure @@ -285,15 +268,15 @@ h5ovisit_c(hid_t_f *group_id, int_f *index_type, int_f *order, H5O_iterate_t op, * SOURCE */ int_f -h5oopen_by_addr_c (hid_t_f *loc_id, haddr_t_f *addr, hid_t_f *obj_id) +h5oopen_by_token_c(hid_t_f *loc_id, H5O_token_t *token, hid_t_f *obj_id) /******/ { int_f ret_value = 0; /* Return value */ /* - * Call H5Oopen_by_address function. + * Call H5Oopen_by_token function. */ - if((*obj_id = (hid_t_f)H5Oopen_by_addr((hid_t)*loc_id, (haddr_t)*addr)) < 0) + if((*obj_id = (hid_t_f)H5Oopen_by_token((hid_t)*loc_id, *token)) < 0) HGOTO_DONE(FAIL); done: @@ -328,7 +311,7 @@ h5oget_info_by_name_c (hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *l { char *c_name = NULL; /* Buffer to hold C string */ int_f ret_value = 0; /* Return value */ - H5O_info_t Oinfo; + H5O_info2_t Oinfo; /* * Convert FORTRAN name to C name @@ -339,7 +322,7 @@ h5oget_info_by_name_c (hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *l /* * Call H5Oinfo_by_name function. */ - if(H5Oget_info_by_name2((hid_t)*loc_id, c_name, + if(H5Oget_info_by_name3((hid_t)*loc_id, c_name, &Oinfo, (unsigned)*fields, (hid_t)*lapl_id) < 0) HGOTO_DONE(FAIL); @@ -379,10 +362,10 @@ h5oget_info_by_idx_c (hid_t_f *loc_id, _fcd group_name, size_t_f *namelen, { char *c_group_name = NULL; /* Buffer to hold C string */ int_f ret_value = 0; /* Return value */ - H5O_info_t Oinfo; + H5O_info2_t Oinfo; H5_index_t c_index_field; H5_iter_order_t c_order; - + /* * Convert FORTRAN name to C name */ @@ -395,7 +378,7 @@ h5oget_info_by_idx_c (hid_t_f *loc_id, _fcd group_name, size_t_f *namelen, /* * Call H5Oinfo_by_idx function. */ - if(H5Oget_info_by_idx2((hid_t)*loc_id, c_group_name, c_index_field, c_order, (hsize_t)*n, + if(H5Oget_info_by_idx3((hid_t)*loc_id, c_group_name, c_index_field, c_order, (hsize_t)*n, &Oinfo, (unsigned)*fields, (hid_t)*lapl_id) < 0) HGOTO_DONE(FAIL); @@ -430,12 +413,12 @@ h5oget_info_c (hid_t_f *object_id, H5O_info_t_f *object_info, int_f *fields) /******/ { int_f ret_value = 0; /* Return value */ - H5O_info_t Oinfo; - + H5O_info2_t Oinfo; + /* * Call H5Oinfo_by_name function. */ - if(H5Oget_info2((hid_t)*object_id, &Oinfo, (unsigned)*fields) < 0) + if(H5Oget_info3((hid_t)*object_id, &Oinfo, (unsigned)*fields) < 0) HGOTO_DONE(FAIL); ret_value = fill_h5o_info_t_f(Oinfo,object_info); @@ -528,7 +511,7 @@ h5ocopy_c (hid_t_f *src_loc_id, _fcd src_name, size_t_f *src_name_len, */ int_f h5ovisit_by_name_c(hid_t_f *loc_id, _fcd object_name, size_t_f *namelen, int_f *index_type, int_f *order, - H5O_iterate_t op, void *op_data, hid_t_f *lapl_id, int_f *fields ) + H5O_iterate2_t op, void *op_data, hid_t_f *lapl_id, int_f *fields ) /******/ { int_f ret_value = -1; /* Return value */ @@ -542,9 +525,9 @@ h5ovisit_by_name_c(hid_t_f *loc_id, _fcd object_name, size_t_f *namelen, int_f HGOTO_DONE(FAIL); /* - * Call H5Ovisit + * Call H5Ovisit_by_name */ - func_ret_value = H5Ovisit_by_name2( (hid_t)*loc_id, c_object_name, (H5_index_t)*index_type, (H5_iter_order_t)*order, + func_ret_value = H5Ovisit_by_name3( (hid_t)*loc_id, c_object_name, (H5_index_t)*index_type, (H5_iter_order_t)*order, op, op_data, (unsigned)*fields, (hid_t)*lapl_id); ret_value = (int_f)func_ret_value; @@ -934,3 +917,41 @@ h5oget_comment_by_name_c (hid_t_f *loc_id, _fcd name, size_t_f *name_size, return ret_value; } + +/****if* H5Of/h5otoken_cmp_c + * NAME + * h5otoken_cmp_c + * PURPOSE + * Calls H5Otoken_cmp + * INPUTS + * loc_id - Identifier of an object in the file / container. + * token1 - The first token to compare. + * token2 - The second token to compare. + * cmp_value - Whether the tokens are equal. + * RETURNS + * 0 on success, -1 on failure + * AUTHOR + * Quincey Koziol + * January 10, 2019 + * SOURCE +*/ +int_f +h5otoken_cmp_c(hid_t_f *loc_id, H5O_token_t *token1, H5O_token_t *token2, + int_f *cmp_value_f) +/******/ +{ + int cmp_value; /* Token comparison result */ + int_f ret_value = 0; /* Return value */ + + /* Call H5Otoken_cmp function */ + cmp_value = 0; + if(H5Otoken_cmp((hid_t)*loc_id, token1, token2, &cmp_value) < 0) + HGOTO_DONE(FAIL); + + /* Set the comparison value to return */ + *cmp_value_f = cmp_value; + +done: + return ret_value; +} + diff --git a/fortran/src/H5Off.F90 b/fortran/src/H5Off.F90 index 8c77230..2b025a7 100644 --- a/fortran/src/H5Off.F90 +++ b/fortran/src/H5Off.F90 @@ -44,7 +44,43 @@ MODULE H5O USE H5GLOBAL IMPLICIT NONE -!****t* H5T (F03)/h5o_info_t +!****t* H5O (F03)/h5o_info_t +! +! Fortran2003 Derived Type: +! + TYPE, BIND(C) :: h5o_info_t + INTEGER(C_LONG) :: fileno ! File number that object is located in + TYPE(H5O_TOKEN_T_F) :: token ! Token for object in file + INTEGER(C_INT) :: type ! Basic object type (group, dataset, etc.) + INTEGER :: rc ! Reference count of object + + INTEGER, DIMENSION(8) :: atime ! Access time ! -- NOTE -- + INTEGER, DIMENSION(8) :: mtime ! Modification time ! Returns an integer array + INTEGER, DIMENSION(8) :: ctime ! Change time ! as specified in the Fortran + INTEGER, DIMENSION(8) :: btime ! Birth time ! intrinsic DATE_AND_TIME(VALUES) + + INTEGER(hsize_t) :: num_attrs ! # of attributes attached to object + END TYPE h5o_info_t + +! C interoperable structure for h5o_info_t. The Fortran derived type returns the time +! values as an integer array as specified in the Fortran intrinsic DATE_AND_TIME(VALUES). +! Whereas, this derived type does not. + + TYPE, BIND(C) :: c_h5o_info_t + INTEGER(C_LONG) :: fileno ! File number that object is located in + TYPE(H5O_TOKEN_T_F) :: token ! Token for object in file + INTEGER(C_INT) :: type ! Basic object type (group, dataset, etc.) + INTEGER(C_INT) :: rc ! Reference count of object + + INTEGER(KIND=TIME_T) :: atime ! Access time + INTEGER(KIND=TIME_T) :: mtime ! Modify time + INTEGER(KIND=TIME_T) :: ctime ! Create time + INTEGER(KIND=TIME_T) :: btime ! Birth time + + INTEGER(hsize_t) :: num_attrs ! # of attributes attached to object + END TYPE c_h5o_info_t + +!****t* H5O (F03)/h5o_native_info_t ! ! Fortran2003 Derived Type: ! @@ -59,13 +95,13 @@ MODULE H5O INTEGER(c_int64_t) :: present ! Flags to indicate presence of message type in header INTEGER(c_int64_t) :: shared ! Flags to indicate message type is shared in header END TYPE mesg_t - + TYPE, BIND(C) :: hdr_t INTEGER :: version ! Version number of header format in file INTEGER :: nmesgs ! Number of object header messages INTEGER :: nchunks ! Number of object header chunks INTEGER :: flags ! Object header status flags - TYPE(space_t) :: space + TYPE(space_t) :: space TYPE(mesg_t) :: mesg END TYPE hdr_t @@ -74,7 +110,7 @@ MODULE H5O INTEGER(C_INT) :: nmesgs ! Number of object header messages INTEGER(C_INT) :: nchunks ! Number of object header chunks INTEGER(C_INT) :: flags ! Object header status flags - TYPE(space_t) :: space + TYPE(space_t) :: space TYPE(mesg_t) :: mesg END TYPE c_hdr_t @@ -88,46 +124,17 @@ MODULE H5O TYPE(H5_ih_info_t) :: obj ! v1/v2 B-tree & local/fractal heap for groups, B-tree for chunked datasets TYPE(H5_ih_info_t) :: attr ! v2 B-tree & heap for attributes ENDTYPE meta_size_t - - TYPE, BIND(C) :: h5o_info_t - INTEGER(C_LONG) :: fileno ! File number that object is located in - INTEGER(haddr_t) :: addr ! Object address in file - INTEGER(C_INT) :: type ! Basic object type (group, dataset, etc.) - INTEGER :: rc ! Reference count of object - - INTEGER, DIMENSION(8) :: atime ! Access time ! -- NOTE -- - INTEGER, DIMENSION(8) :: mtime ! Modification time ! Returns an integer array - INTEGER, DIMENSION(8) :: ctime ! Change time ! as specified in the Fortran - INTEGER, DIMENSION(8) :: btime ! Birth time ! intrinsic DATE_AND_TIME(VALUES) - - INTEGER(hsize_t) :: num_attrs ! # of attributes attached to object + TYPE, BIND(C) :: h5o_native_info_t TYPE(hdr_t) :: hdr - TYPE(meta_size_t) :: meta_size - END TYPE h5o_info_t - -! C interoperable structure for h5o_info_t. The Fortran derived type returns the time -! values as an integer array as specified in the Fortran intrinsic DATE_AND_TIME(VALUES). -! Whereas, this derived type does not. - - TYPE, BIND(C) :: c_h5o_info_t - INTEGER(C_LONG) :: fileno ! File number that object is located in - INTEGER(haddr_t) :: addr ! Object address in file - INTEGER(C_INT) :: type ! Basic object type (group, dataset, etc.) - INTEGER(C_INT) :: rc ! Reference count of object - - INTEGER(KIND=TIME_T) :: atime ! Access time - INTEGER(KIND=TIME_T) :: mtime ! modify time - INTEGER(KIND=TIME_T) :: ctime ! create time - INTEGER(KIND=TIME_T) :: btime ! Access time - - INTEGER(hsize_t) :: num_attrs ! # of attributes attached to object + END TYPE h5o_native_info_t +! C interoperable structure for h5o_native_info_t. + TYPE, BIND(C) :: c_h5o_native_info_t TYPE(c_hdr_t) :: hdr - TYPE(meta_size_t) :: meta_size - END TYPE c_h5o_info_t + END TYPE c_h5o_native_info_t !***** @@ -292,46 +299,46 @@ CONTAINS END SUBROUTINE h5oclose_f ! -!****s* H5O/h5open_by_addr_f -! NAME -! h5oopen_by_addr_f +!****s* H5O/h5oopen_by_token_f +! NAME +! h5oopen_by_token_f ! ! PURPOSE -! Opens an object using its address within an HDF5 file. +! Opens an object using its token within an HDF5 file. ! -! Inputs: +! Inputs: ! loc_id - File or group identifier. -! addr - Object’s address in the file. +! token - Object’s token in the file. ! ! Outputs: ! obj_id - Object identifier for the opened object. ! hdferr - Returns 0 if successful and -1 if fails. ! -! AUTHOR +! AUTHOR ! M. Scot Breitenfeld ! September 14, 2009 -! +! ! Fortran90 Interface: - SUBROUTINE h5oopen_by_addr_f(loc_id, addr, obj_id, hdferr) + SUBROUTINE h5oopen_by_token_f(loc_id, token, obj_id, hdferr) IMPLICIT NONE - INTEGER(HID_T) , INTENT(IN) :: loc_id - INTEGER(HADDR_T), INTENT(IN) :: addr - INTEGER(HID_T) , INTENT(OUT) :: obj_id - INTEGER , INTENT(OUT) :: hdferr + INTEGER(HID_T) , INTENT(IN) :: loc_id + TYPE(H5O_TOKEN_T_F), INTENT(IN) :: token + INTEGER(HID_T) , INTENT(OUT) :: obj_id + INTEGER , INTENT(OUT) :: hdferr !***** INTERFACE - INTEGER FUNCTION h5oopen_by_addr_c(loc_id, addr, obj_id) BIND(C,NAME='h5oopen_by_addr_c') - IMPORT :: HID_T, HADDR_T + INTEGER FUNCTION h5oopen_by_token_c(loc_id, token, obj_id) BIND(C,NAME='h5oopen_by_token_c') + IMPORT :: HID_T, H5O_TOKEN_T_F IMPLICIT NONE INTEGER(HID_T), INTENT(IN) :: loc_id - INTEGER(HADDR_T), INTENT(IN) :: addr + TYPE(H5O_TOKEN_T_F), INTENT(IN) :: token INTEGER(HID_T), INTENT(OUT) :: obj_id - END FUNCTION h5oopen_by_addr_c + END FUNCTION h5oopen_by_token_c END INTERFACE - hdferr = h5oopen_by_addr_c(loc_id, addr, obj_id) + hdferr = h5oopen_by_token_c(loc_id, token, obj_id) - END SUBROUTINE h5oopen_by_addr_f + END SUBROUTINE h5oopen_by_token_f ! !****s* H5O/h5ocopy_f ! NAME @@ -966,7 +973,7 @@ CONTAINS CHARACTER(KIND=C_CHAR), DIMENSION(*), INTENT(IN) :: name INTEGER(SIZE_T) , INTENT(IN) :: namelen INTEGER(HID_T) , INTENT(IN) :: lapl_id_default - TYPE(C_PTR),VALUE :: object_info + TYPE(C_PTR), VALUE :: object_info INTEGER , INTENT(IN) :: fields END FUNCTION h5oget_info_by_name_c END INTERFACE @@ -1212,5 +1219,50 @@ CONTAINS END SUBROUTINE h5ovisit_by_name_f +!****s* H5O/h5otoken_cmp_f +! NAME +! h5otoken_cmp_f +! +! PURPOSE +! Compare two tokens, which must be from the same file / containers. +! +! Inputs: +! loc_id - Identifier of an object in the file / container. +! token1 - The first token to compare. +! token2 - The second token to compare. +! +! Outputs: +! cmp_value - Returns 0 if tokens are equal, non-zero for unequal tokens. +! hdferr - Returns 0 if successful and -1 if fails. +! +! AUTHOR +! Quincey Koziol +! January 10, 2019 +! +! Fortran90 Interface: + SUBROUTINE h5otoken_cmp_f(loc_id, token1, token2, cmp_value, hdferr) + IMPLICIT NONE + INTEGER(HID_T) , INTENT(IN) :: loc_id + TYPE(H5O_TOKEN_T_F), INTENT(IN) :: token1 ! First token + TYPE(H5O_TOKEN_T_F), INTENT(IN) :: token2 ! First token + INTEGER , INTENT(OUT) :: cmp_value + INTEGER , INTENT(OUT) :: hdferr +!***** + INTERFACE + INTEGER FUNCTION h5otoken_cmp_c(loc_id, token1, token2, cmp_value) BIND(C,NAME='h5otoken_cmp_c') + IMPORT :: HID_T, C_PTR, H5O_TOKEN_T_F + IMPLICIT NONE + INTEGER(HID_T), INTENT(IN) :: loc_id + TYPE(H5O_TOKEN_T_F), INTENT(IN) :: token1 ! First token + TYPE(H5O_TOKEN_T_F), INTENT(IN) :: token2 ! First token + INTEGER, INTENT(OUT) :: cmp_value + + END FUNCTION h5otoken_cmp_c + END INTERFACE + + hdferr = h5otoken_cmp_c(loc_id, token1, token2, cmp_value) + + END SUBROUTINE h5otoken_cmp_f + END MODULE H5O diff --git a/fortran/src/H5VLff.F90 b/fortran/src/H5VLff.F90 index e21f38f..eea9dfe 100644 --- a/fortran/src/H5VLff.F90 +++ b/fortran/src/H5VLff.F90 @@ -167,10 +167,49 @@ CONTAINS END SUBROUTINE H5VLis_connector_registered_f ! -!****s* H5VL/H5VLis_connector_registered_f +!****s* H5VL/H5VLget_connector_id_f ! ! NAME -! H5VLis_connector_registered_f +! H5VLget_connector_id_f +! +! PURPOSE +! Retrieves the ID for a registered VOL connector. +! +! INPUTS +! obj_id - Object id +! OUTPUTS +! vol_id - Connector id +! hdferr - Returns 0 if successful and -1 if fails +! SOURCE + + SUBROUTINE H5VLget_connector_id_f(obj_id, vol_id, hdferr) + IMPLICIT NONE + INTEGER(HID_T), INTENT(IN) :: obj_id + INTEGER(HID_T), INTENT(OUT) :: vol_id + INTEGER, INTENT(OUT) :: hdferr +!***** + + INTERFACE + INTEGER(HID_T) FUNCTION H5VLget_connector_id(obj_id) BIND(C,NAME='H5VLget_connector_id') + IMPORT :: HID_T + INTEGER(HID_T), INTENT(IN) :: obj_id + END FUNCTION H5VLget_connector_id + END INTERFACE + + vol_id = H5VLget_connector_id(obj_id) + + IF(vol_id.LT.0)THEN + hdferr = -1 + vol_id = H5I_INVALID_HID_F + ENDIF + + END SUBROUTINE H5VLget_connector_id_f + +! +!****s* H5VL/H5VLget_connector_id_by_name_f +! +! NAME +! H5VLget_connector_id_by_name_f ! ! PURPOSE ! Retrieves the ID for a registered VOL connector. @@ -182,7 +221,7 @@ CONTAINS ! hdferr - Returns 0 if successful and -1 if fails ! SOURCE - SUBROUTINE H5VLget_connector_id_f(name, vol_id, hdferr) + SUBROUTINE H5VLget_connector_id_by_name_f(name, vol_id, hdferr) IMPLICIT NONE CHARACTER(LEN=*), INTENT(IN) :: name INTEGER(HID_T), INTENT(OUT) :: vol_id @@ -191,22 +230,23 @@ CONTAINS CHARACTER(LEN=LEN_TRIM(name)+1,KIND=C_CHAR) :: c_name INTERFACE - INTEGER(HID_T) FUNCTION H5VLget_connector_id(name) BIND(C,NAME='H5VLget_connector_id') + INTEGER(HID_T) FUNCTION H5VLget_connector_id_by_name(name) BIND(C,NAME='H5VLget_connector_id_by_name') IMPORT :: C_CHAR IMPORT :: HID_T CHARACTER(KIND=C_CHAR), DIMENSION(*), INTENT(IN) :: name - END FUNCTION H5VLget_connector_id + END FUNCTION H5VLget_connector_id_by_name END INTERFACE c_name = TRIM(name)//C_NULL_CHAR - vol_id = H5VLget_connector_id(c_name) - + vol_id = H5VLget_connector_id_by_name(c_name) + + hdferr = 0 IF(vol_id.LT.0)THEN hdferr = -1 vol_id = H5I_INVALID_HID_F ENDIF - END SUBROUTINE H5VLget_connector_id_f + END SUBROUTINE H5VLget_connector_id_by_name_f SUBROUTINE H5VLget_connector_name_f(obj_id, name, hdferr, name_len) IMPLICIT NONE diff --git a/fortran/src/H5_f.c b/fortran/src/H5_f.c index 2d1c6e7..132da7b 100644 --- a/fortran/src/H5_f.c +++ b/fortran/src/H5_f.c @@ -56,7 +56,6 @@ h5init_types_c( hid_t_f * types, hid_t_f * floatingtypes, hid_t_f * integertypes { int ret_value = -1; hid_t c_type_id; - size_t tmp_val; int i; /* Fortran INTEGER may not be the same as C; do all checking to find @@ -133,8 +132,7 @@ h5init_types_c( hid_t_f * types, hid_t_f * floatingtypes, hid_t_f * integertypes #endif if ((c_type_id = H5Tcopy(H5T_FORTRAN_S1)) < 0) return ret_value; - tmp_val = 1; - if(H5Tset_size(c_type_id, tmp_val) < 0) return ret_value; + if(H5Tset_size(c_type_id, 1) < 0) return ret_value; if(H5Tset_strpad(c_type_id, H5T_STR_SPACEPAD) < 0) return ret_value; types[8] = (hid_t_f)c_type_id; @@ -313,6 +311,7 @@ h5close_types_c( hid_t_f * types, int_f *lentypes, ret_value = 0; return ret_value; } + /****if* H5_f/h5init_flags_c * NAME * h5init_flags_c @@ -370,7 +369,6 @@ h5init_flags_c( int_f *h5d_flags, size_t_f *h5d_size_flags, haddr_t_f *h5_haddr_generic_flags) /******/ { - int ret_value = -1; /* * H5D flags */ @@ -538,196 +536,201 @@ h5init_flags_c( int_f *h5d_flags, size_t_f *h5d_size_flags, * but we need to assign each kind of message to a different bit so that * one index can hold multiple types.) */ - h5o_flags[7] = (int_f)H5O_SHMESG_NONE_FLAG; /* No shared messages */ - h5o_flags[8] = (int_f)H5O_SHMESG_SDSPACE_FLAG; /* Simple Dataspace Message. */ - h5o_flags[9] = (int_f)H5O_SHMESG_DTYPE_FLAG; /* Datatype Message. */ - h5o_flags[10] = (int_f)H5O_SHMESG_FILL_FLAG; /* Fill Value Message. */ - h5o_flags[11] = (int_f)H5O_SHMESG_PLINE_FLAG; /* Filter pipeline message. */ - h5o_flags[12] = (int_f)H5O_SHMESG_ATTR_FLAG; /* Attribute Message. */ - h5o_flags[13] = (int_f)H5O_SHMESG_ALL_FLAG; + h5o_flags[7] = (int_f)H5O_SHMESG_NONE_FLAG; /* No shared messages */ + h5o_flags[8] = (int_f)H5O_SHMESG_SDSPACE_FLAG; /* Simple Dataspace Message. */ + h5o_flags[9] = (int_f)H5O_SHMESG_DTYPE_FLAG; /* Datatype Message. */ + h5o_flags[10] = (int_f)H5O_SHMESG_FILL_FLAG; /* Fill Value Message. */ + h5o_flags[11] = (int_f)H5O_SHMESG_PLINE_FLAG; /* Filter pipeline message. */ + h5o_flags[12] = (int_f)H5O_SHMESG_ATTR_FLAG; /* Attribute Message. */ + h5o_flags[13] = (int_f)H5O_SHMESG_ALL_FLAG; /* Object header status flag definitions */ - h5o_flags[14] = (int_f)H5O_HDR_CHUNK0_SIZE; /* 2-bit field indicating # of bytes to store the size of chunk 0's data */ - h5o_flags[15] = (int_f)H5O_HDR_ATTR_CRT_ORDER_TRACKED; /* Attribute creation order is tracked */ - h5o_flags[16] = (int_f)H5O_HDR_ATTR_CRT_ORDER_INDEXED; /* Attribute creation order has index */ - h5o_flags[17] = (int_f)H5O_HDR_ATTR_STORE_PHASE_CHANGE; /* Non-default attribute storage phase change values stored */ - h5o_flags[18] = (int_f)H5O_HDR_STORE_TIMES; /* Store access, modification, change & birth times for object */ - h5o_flags[19] = (int_f)H5O_HDR_ALL_FLAGS; + h5o_flags[14] = (int_f)H5O_HDR_CHUNK0_SIZE; /* 2-bit field indicating # of bytes to store the size of chunk 0's data */ + h5o_flags[15] = (int_f)H5O_HDR_ATTR_CRT_ORDER_TRACKED; /* Attribute creation order is tracked */ + h5o_flags[16] = (int_f)H5O_HDR_ATTR_CRT_ORDER_INDEXED; /* Attribute creation order has index */ + h5o_flags[17] = (int_f)H5O_HDR_ATTR_STORE_PHASE_CHANGE; /* Non-default attribute storage phase change values stored */ + h5o_flags[18] = (int_f)H5O_HDR_STORE_TIMES; /* Store access, modification, change & birth times for object */ + h5o_flags[19] = (int_f)H5O_HDR_ALL_FLAGS; /* Maximum shared message values. Number of indexes is 8 to allow room to add * new types of messages. */ - h5o_flags[20] = (int_f)H5O_SHMESG_MAX_NINDEXES; - h5o_flags[21] = (int_f)H5O_SHMESG_MAX_LIST_SIZE; + h5o_flags[20] = (int_f)H5O_SHMESG_MAX_NINDEXES; + h5o_flags[21] = (int_f)H5O_SHMESG_MAX_LIST_SIZE; /* Types of objects in file */ - h5o_flags[22] = (int_f)H5O_TYPE_UNKNOWN; /* Unknown object type */ - h5o_flags[23] = (int_f)H5O_TYPE_GROUP; /* Object is a group */ - h5o_flags[24] = (int_f)H5O_TYPE_DATASET; /* Object is a dataset */ - h5o_flags[25] = (int_f)H5O_TYPE_NAMED_DATATYPE; /* Object is a named data type */ - h5o_flags[26] = (int_f)H5O_TYPE_NTYPES; /* Number of different object types */ + h5o_flags[22] = (int_f)H5O_TYPE_UNKNOWN; /* Unknown object type */ + h5o_flags[23] = (int_f)H5O_TYPE_GROUP; /* Object is a group */ + h5o_flags[24] = (int_f)H5O_TYPE_DATASET; /* Object is a dataset */ + h5o_flags[25] = (int_f)H5O_TYPE_NAMED_DATATYPE; /* Object is a named data type */ + h5o_flags[26] = (int_f)H5O_TYPE_NTYPES; /* Number of different object types */ /* Flags for H5Oget_info. * These flags determine which fields will be filled in in the H5O_info_t - * struct. + * struct. */ - h5o_flags[27] = (int_f)H5O_INFO_ALL; /* (H5O_INFO_BASIC|H5O_INFO_TIME|H5O_INFO_NUM_ATTRS|H5O_INFO_HDR|H5O_INFO_META_SIZE) */ - h5o_flags[28] = (int_f)H5O_INFO_BASIC; /* Fill in the fileno, addr, type, and rc fields */ - h5o_flags[29] = (int_f)H5O_INFO_TIME; /* Fill in the atime, mtime, ctime, and btime fields */ - h5o_flags[30] = (int_f)H5O_INFO_NUM_ATTRS; /* Fill in the num_attrs field */ - h5o_flags[31] = (int_f)H5O_INFO_HDR; /* Fill in the hdr field */ - h5o_flags[32] = (int_f)H5O_INFO_META_SIZE; /* Fill in the meta_size field */ + h5o_flags[27] = (int_f)H5O_INFO_ALL; /* (H5O_INFO_BASIC|H5O_INFO_TIME|H5O_INFO_NUM_ATTRS) */ + h5o_flags[28] = (int_f)H5O_INFO_BASIC; /* Fill in the fileno, addr, type, and rc fields */ + h5o_flags[29] = (int_f)H5O_INFO_TIME; /* Fill in the atime, mtime, ctime, and btime fields */ + h5o_flags[30] = (int_f)H5O_INFO_NUM_ATTRS; /* Fill in the num_attrs field */ + +/* Flags for H5Oget_native_info. + * These flags determine which fields will be filled in in the H5O_native_info_t + * struct. + */ + h5o_flags[31] = (int_f)H5O_NATIVE_INFO_ALL; /* (H5O_NATIVE_INFO_HDR|H5O_NATIVE_INFO_META_SIZE) */ + h5o_flags[32] = (int_f)H5O_NATIVE_INFO_HDR; /* Fill in the hdr field */ + h5o_flags[33] = (int_f)H5O_NATIVE_INFO_META_SIZE; /* Fill in the meta_size field */ /* * H5P flags */ - h5p_flags[0] = (hid_t_f)H5P_FILE_CREATE; - h5p_flags[1] = (hid_t_f)H5P_FILE_ACCESS; - h5p_flags[2] = (hid_t_f)H5P_DATASET_CREATE; - h5p_flags[3] = (hid_t_f)H5P_DATASET_XFER; - h5p_flags[4] = (hid_t_f)H5P_FILE_MOUNT; - h5p_flags[5] = (hid_t_f)H5P_DEFAULT; - h5p_flags[6] = (hid_t_f)H5P_ROOT; - h5p_flags[7] = (hid_t_f)H5P_OBJECT_CREATE; - h5p_flags[8] = (hid_t_f)H5P_DATASET_ACCESS; - h5p_flags[9] = (hid_t_f)H5P_GROUP_CREATE; - h5p_flags[10] = (hid_t_f)H5P_GROUP_ACCESS; - h5p_flags[11] = (hid_t_f)H5P_DATATYPE_CREATE; - h5p_flags[12] = (hid_t_f)H5P_DATATYPE_ACCESS; - h5p_flags[13] = (hid_t_f)H5P_STRING_CREATE; - h5p_flags[14] = (hid_t_f)H5P_ATTRIBUTE_CREATE; - h5p_flags[15] = (hid_t_f)H5P_OBJECT_COPY; - h5p_flags[16] = (hid_t_f)H5P_LINK_CREATE; - h5p_flags[17] = (hid_t_f)H5P_LINK_ACCESS; + h5p_flags[0] = (hid_t_f)H5P_FILE_CREATE; + h5p_flags[1] = (hid_t_f)H5P_FILE_ACCESS; + h5p_flags[2] = (hid_t_f)H5P_DATASET_CREATE; + h5p_flags[3] = (hid_t_f)H5P_DATASET_XFER; + h5p_flags[4] = (hid_t_f)H5P_FILE_MOUNT; + h5p_flags[5] = (hid_t_f)H5P_DEFAULT; + h5p_flags[6] = (hid_t_f)H5P_ROOT; + h5p_flags[7] = (hid_t_f)H5P_OBJECT_CREATE; + h5p_flags[8] = (hid_t_f)H5P_DATASET_ACCESS; + h5p_flags[9] = (hid_t_f)H5P_GROUP_CREATE; + h5p_flags[10] = (hid_t_f)H5P_GROUP_ACCESS; + h5p_flags[11] = (hid_t_f)H5P_DATATYPE_CREATE; + h5p_flags[12] = (hid_t_f)H5P_DATATYPE_ACCESS; + h5p_flags[13] = (hid_t_f)H5P_STRING_CREATE; + h5p_flags[14] = (hid_t_f)H5P_ATTRIBUTE_CREATE; + h5p_flags[15] = (hid_t_f)H5P_OBJECT_COPY; + h5p_flags[16] = (hid_t_f)H5P_LINK_CREATE; + h5p_flags[17] = (hid_t_f)H5P_LINK_ACCESS; /* * H5P integer flags */ - h5p_flags_int[0] = (int_f)H5P_CRT_ORDER_INDEXED; - h5p_flags_int[1] = (int_f)H5P_CRT_ORDER_TRACKED; + h5p_flags_int[0] = (int_f)H5P_CRT_ORDER_INDEXED; + h5p_flags_int[1] = (int_f)H5P_CRT_ORDER_TRACKED; /* * H5R flags */ - - h5r_flags[0] = (int_f)H5R_OBJECT; - h5r_flags[1] = (int_f)H5R_DATASET_REGION; + h5r_flags[0] = (int_f)H5R_OBJECT; + h5r_flags[1] = (int_f)H5R_DATASET_REGION; /* * H5S flags */ - - h5s_hid_flags[0] = (hid_t_f)H5S_ALL; - - h5s_hsize_flags[0] = (hsize_t_f)H5S_UNLIMITED; - - h5s_flags[0] = (int_f)H5S_SCALAR; - h5s_flags[1] = (int_f)H5S_SIMPLE; - h5s_flags[2] = (int_f)H5S_NULL; - h5s_flags[3] = (int_f)H5S_SELECT_SET; - h5s_flags[4] = (int_f)H5S_SELECT_OR; - - h5s_flags[5] = (int_f)H5S_SELECT_NOOP; - h5s_flags[6] = (int_f)H5S_SELECT_AND; - h5s_flags[7] = (int_f)H5S_SELECT_XOR; - h5s_flags[8] = (int_f)H5S_SELECT_NOTB; - h5s_flags[9] = (int_f)H5S_SELECT_NOTA; - - h5s_flags[10] = (int_f)H5S_SELECT_APPEND; - h5s_flags[11] = (int_f)H5S_SELECT_PREPEND; - h5s_flags[12] = (int_f)H5S_SELECT_INVALID; - h5s_flags[13] = (int_f)H5S_SEL_ERROR; - h5s_flags[14] = (int_f)H5S_SEL_NONE; - - h5s_flags[15] = (int_f)H5S_SEL_POINTS; - h5s_flags[16] = (int_f)H5S_SEL_HYPERSLABS; - h5s_flags[17] = (int_f)H5S_SEL_ALL; + h5s_hid_flags[0] = (hid_t_f)H5S_ALL; + + h5s_hsize_flags[0] = (hsize_t_f)H5S_UNLIMITED; + + h5s_flags[0] = (int_f)H5S_SCALAR; + h5s_flags[1] = (int_f)H5S_SIMPLE; + h5s_flags[2] = (int_f)H5S_NULL; + h5s_flags[3] = (int_f)H5S_SELECT_SET; + h5s_flags[4] = (int_f)H5S_SELECT_OR; + + h5s_flags[5] = (int_f)H5S_SELECT_NOOP; + h5s_flags[6] = (int_f)H5S_SELECT_AND; + h5s_flags[7] = (int_f)H5S_SELECT_XOR; + h5s_flags[8] = (int_f)H5S_SELECT_NOTB; + h5s_flags[9] = (int_f)H5S_SELECT_NOTA; + + h5s_flags[10] = (int_f)H5S_SELECT_APPEND; + h5s_flags[11] = (int_f)H5S_SELECT_PREPEND; + h5s_flags[12] = (int_f)H5S_SELECT_INVALID; + h5s_flags[13] = (int_f)H5S_SEL_ERROR; + h5s_flags[14] = (int_f)H5S_SEL_NONE; + + h5s_flags[15] = (int_f)H5S_SEL_POINTS; + h5s_flags[16] = (int_f)H5S_SEL_HYPERSLABS; + h5s_flags[17] = (int_f)H5S_SEL_ALL; + /* * H5T flags */ - h5t_flags[0] = (int_f)H5T_NO_CLASS; - h5t_flags[1] = (int_f)H5T_INTEGER; - h5t_flags[2] = (int_f)H5T_FLOAT; - h5t_flags[3] = (int_f)H5T_TIME; - h5t_flags[4] = (int_f)H5T_STRING; - h5t_flags[5] = (int_f)H5T_BITFIELD; - h5t_flags[6] = (int_f)H5T_OPAQUE; - h5t_flags[7] = (int_f)H5T_COMPOUND; - h5t_flags[8] = (int_f)H5T_REFERENCE; - h5t_flags[9] = (int_f)H5T_ENUM; - h5t_flags[10] = (int_f)H5T_ORDER_LE; - h5t_flags[11] = (int_f)H5T_ORDER_BE; - h5t_flags[12] = (int_f)H5T_ORDER_MIXED; - h5t_flags[13] = (int_f)H5T_ORDER_VAX; - h5t_flags[14] = (int_f)H5T_ORDER_NONE; - h5t_flags[15] = (int_f)H5T_PAD_ZERO; - h5t_flags[16] = (int_f)H5T_PAD_ONE; - h5t_flags[17] = (int_f)H5T_PAD_BACKGROUND; - h5t_flags[18] = (int_f)H5T_PAD_ERROR; - h5t_flags[19] = (int_f)H5T_SGN_NONE; - h5t_flags[20] = (int_f)H5T_SGN_2; - h5t_flags[21] = (int_f)H5T_SGN_ERROR; - h5t_flags[22] = (int_f)H5T_NORM_IMPLIED; - h5t_flags[23] = (int_f)H5T_NORM_MSBSET; - h5t_flags[24] = (int_f)H5T_NORM_NONE; - h5t_flags[25] = (int_f)H5T_CSET_ASCII; - h5t_flags[26] = (int_f)H5T_CSET_UTF8; - h5t_flags[27] = (int_f)H5T_STR_NULLTERM; - h5t_flags[28] = (int_f)H5T_STR_NULLPAD; - h5t_flags[29] = (int_f)H5T_STR_SPACEPAD; - h5t_flags[30] = (int_f)H5T_STR_ERROR; - h5t_flags[31] = (int_f)H5T_VLEN; - h5t_flags[32] = (int_f)H5T_ARRAY; - h5t_flags[33] = (int_f)H5T_DIR_ASCEND; - h5t_flags[34] = (int_f)H5T_DIR_DESCEND; + h5t_flags[0] = (int_f)H5T_NO_CLASS; + h5t_flags[1] = (int_f)H5T_INTEGER; + h5t_flags[2] = (int_f)H5T_FLOAT; + h5t_flags[3] = (int_f)H5T_TIME; + h5t_flags[4] = (int_f)H5T_STRING; + h5t_flags[5] = (int_f)H5T_BITFIELD; + h5t_flags[6] = (int_f)H5T_OPAQUE; + h5t_flags[7] = (int_f)H5T_COMPOUND; + h5t_flags[8] = (int_f)H5T_REFERENCE; + h5t_flags[9] = (int_f)H5T_ENUM; + h5t_flags[10] = (int_f)H5T_ORDER_LE; + h5t_flags[11] = (int_f)H5T_ORDER_BE; + h5t_flags[12] = (int_f)H5T_ORDER_MIXED; + h5t_flags[13] = (int_f)H5T_ORDER_VAX; + h5t_flags[14] = (int_f)H5T_ORDER_NONE; + h5t_flags[15] = (int_f)H5T_PAD_ZERO; + h5t_flags[16] = (int_f)H5T_PAD_ONE; + h5t_flags[17] = (int_f)H5T_PAD_BACKGROUND; + h5t_flags[18] = (int_f)H5T_PAD_ERROR; + h5t_flags[19] = (int_f)H5T_SGN_NONE; + h5t_flags[20] = (int_f)H5T_SGN_2; + h5t_flags[21] = (int_f)H5T_SGN_ERROR; + h5t_flags[22] = (int_f)H5T_NORM_IMPLIED; + h5t_flags[23] = (int_f)H5T_NORM_MSBSET; + h5t_flags[24] = (int_f)H5T_NORM_NONE; + h5t_flags[25] = (int_f)H5T_CSET_ASCII; + h5t_flags[26] = (int_f)H5T_CSET_UTF8; + h5t_flags[27] = (int_f)H5T_STR_NULLTERM; + h5t_flags[28] = (int_f)H5T_STR_NULLPAD; + h5t_flags[29] = (int_f)H5T_STR_SPACEPAD; + h5t_flags[30] = (int_f)H5T_STR_ERROR; + h5t_flags[31] = (int_f)H5T_VLEN; + h5t_flags[32] = (int_f)H5T_ARRAY; + h5t_flags[33] = (int_f)H5T_DIR_ASCEND; + h5t_flags[34] = (int_f)H5T_DIR_DESCEND; + /* * H5Z flags */ - h5z_flags[0] = (int_f)H5Z_FILTER_ERROR; - h5z_flags[1] = (int_f)H5Z_FILTER_NONE; - h5z_flags[2] = (int_f)H5Z_FILTER_DEFLATE; - h5z_flags[3] = (int_f)H5Z_FILTER_SHUFFLE; - h5z_flags[4] = (int_f)H5Z_FILTER_FLETCHER32; - h5z_flags[5] = (int_f)H5Z_ERROR_EDC; - h5z_flags[6] = (int_f)H5Z_DISABLE_EDC; - h5z_flags[7] = (int_f)H5Z_ENABLE_EDC; - h5z_flags[8] = (int_f)H5Z_NO_EDC; - h5z_flags[9] = (int_f)H5Z_FILTER_SZIP; - h5z_flags[10] = (int_f)H5Z_FLAG_OPTIONAL; - h5z_flags[11] = (int_f)H5Z_FILTER_CONFIG_ENCODE_ENABLED; - h5z_flags[12] = (int_f)H5Z_FILTER_CONFIG_DECODE_ENABLED; - h5z_flags[13] = (int_f)H5Z_FILTER_ALL; - h5z_flags[14] = (int_f)H5Z_FILTER_NBIT; - h5z_flags[15] = (int_f)H5Z_FILTER_SCALEOFFSET; - h5z_flags[16] = (int_f)H5Z_SO_FLOAT_DSCALE; - h5z_flags[17] = (int_f)H5Z_SO_FLOAT_ESCALE; - h5z_flags[18] = (int_f)H5Z_SO_INT; - h5z_flags[19] = (int_f)H5Z_SO_INT_MINBITS_DEFAULT; + h5z_flags[0] = (int_f)H5Z_FILTER_ERROR; + h5z_flags[1] = (int_f)H5Z_FILTER_NONE; + h5z_flags[2] = (int_f)H5Z_FILTER_DEFLATE; + h5z_flags[3] = (int_f)H5Z_FILTER_SHUFFLE; + h5z_flags[4] = (int_f)H5Z_FILTER_FLETCHER32; + h5z_flags[5] = (int_f)H5Z_ERROR_EDC; + h5z_flags[6] = (int_f)H5Z_DISABLE_EDC; + h5z_flags[7] = (int_f)H5Z_ENABLE_EDC; + h5z_flags[8] = (int_f)H5Z_NO_EDC; + h5z_flags[9] = (int_f)H5Z_FILTER_SZIP; + h5z_flags[10] = (int_f)H5Z_FLAG_OPTIONAL; + h5z_flags[11] = (int_f)H5Z_FILTER_CONFIG_ENCODE_ENABLED; + h5z_flags[12] = (int_f)H5Z_FILTER_CONFIG_DECODE_ENABLED; + h5z_flags[13] = (int_f)H5Z_FILTER_ALL; + h5z_flags[14] = (int_f)H5Z_FILTER_NBIT; + h5z_flags[15] = (int_f)H5Z_FILTER_SCALEOFFSET; + h5z_flags[16] = (int_f)H5Z_SO_FLOAT_DSCALE; + h5z_flags[17] = (int_f)H5Z_SO_FLOAT_ESCALE; + h5z_flags[18] = (int_f)H5Z_SO_INT; + h5z_flags[19] = (int_f)H5Z_SO_INT_MINBITS_DEFAULT; /* * H5 Generic flags introduced in version 1.8 */ - /* H5_index_t enum struct */ + /* H5_index_t enum struct */ - h5_generic_flags[0] = (int_f)H5_INDEX_UNKNOWN; /* Unknown index type */ - h5_generic_flags[1] = (int_f)H5_INDEX_NAME; /* Index on names */ - h5_generic_flags[2] = (int_f)H5_INDEX_CRT_ORDER; /* Index on creation order */ - h5_generic_flags[3] = (int_f)H5_INDEX_N; /* Index on creation order */ + h5_generic_flags[0] = (int_f)H5_INDEX_UNKNOWN; /* Unknown index type */ + h5_generic_flags[1] = (int_f)H5_INDEX_NAME; /* Index on names */ + h5_generic_flags[2] = (int_f)H5_INDEX_CRT_ORDER; /* Index on creation order */ + h5_generic_flags[3] = (int_f)H5_INDEX_N; /* Index on creation order */ - /* H5_iter_order_t enum struct */ + /* H5_iter_order_t enum struct */ - h5_generic_flags[4] = (int_f)H5_ITER_UNKNOWN; /* Unknown order */ - h5_generic_flags[5] = (int_f)H5_ITER_INC; /* Increasing order */ - h5_generic_flags[6] = (int_f)H5_ITER_DEC; /* Decreasing order */ - h5_generic_flags[7] = (int_f)H5_ITER_NATIVE; /* No particular order, whatever is fastest */ - h5_generic_flags[8] = (int_f)H5_ITER_N; /* Number of iteration orders */ + h5_generic_flags[4] = (int_f)H5_ITER_UNKNOWN; /* Unknown order */ + h5_generic_flags[5] = (int_f)H5_ITER_INC; /* Increasing order */ + h5_generic_flags[6] = (int_f)H5_ITER_DEC; /* Decreasing order */ + h5_generic_flags[7] = (int_f)H5_ITER_NATIVE; /* No particular order, whatever is fastest */ + h5_generic_flags[8] = (int_f)H5_ITER_N; /* Number of iteration orders */ - h5_haddr_generic_flags[0] = (haddr_t_f)HADDR_UNDEF; /* undefined address */ + h5_haddr_generic_flags[0] = (haddr_t_f)HADDR_UNDEF; /* undefined address */ - ret_value = 0; - return ret_value; + return 0; } int_f diff --git a/fortran/src/H5f90.h b/fortran/src/H5f90.h index eabe3d0..655cb9b 100644 --- a/fortran/src/H5f90.h +++ b/fortran/src/H5f90.h @@ -25,5 +25,8 @@ /* Constants used in H5Gf.c files */ #define OBJECT_NAMELEN_DEFAULT_F -1 + #define H5_MAX(a,b) (((a)>(b)) ? (a) : (b)) + #endif /* _H5f90_H */ + diff --git a/fortran/src/H5f90global.F90 b/fortran/src/H5f90global.F90 index 02e3bc3..dabc0bb 100644 --- a/fortran/src/H5f90global.F90 +++ b/fortran/src/H5f90global.F90 @@ -54,6 +54,7 @@ MODULE H5GLOBAL ! If you change the value of these parameters, do not forget to change corresponding ! values in the H5f90.h file. INTEGER, PARAMETER :: REF_REG_BUF_LEN = 3 + INTEGER, PARAMETER :: H5O_TOKEN_BUF_LEN = 16 ! Matches C defined value in H5public.h ! Parameters used in the function 'h5kind_to_type' located in H5_ff.F90. ! The flag is used to tell the function whether the kind input variable @@ -70,13 +71,17 @@ MODULE H5GLOBAL INTEGER, DIMENSION(1:REF_REG_BUF_LEN) :: ref END TYPE hdset_reg_ref_t_f + TYPE, BIND(C) :: h5o_token_t_f + INTEGER(C_INT8_T), DIMENSION(1:H5O_TOKEN_BUF_LEN) :: token + END TYPE h5o_token_t_f + ! Do not forget to change these values when new predefined ! datatypes are added INTEGER, PARAMETER :: PREDEF_TYPES_LEN = 19 INTEGER, PARAMETER :: FLOATING_TYPES_LEN = 4 INTEGER, PARAMETER :: INTEGER_TYPES_LEN = 27 - ! These arrays need to be global because they are used in + ! These arrays need to be global because they are used in ! both h5open_f and in h5close_f; initialize to fix linking issues ! on OSX and Intel compilers. INTEGER(HID_T), DIMENSION(1:PREDEF_TYPES_LEN) :: predef_types = -1 diff --git a/fortran/src/H5f90i.h b/fortran/src/H5f90i.h index 7d066cd..057edc5 100644 --- a/fortran/src/H5f90i.h +++ b/fortran/src/H5f90i.h @@ -21,8 +21,7 @@ */ #include "H5f90i_gen.h" -/* Define _fcd. These are the same on every system - * but UNICOS. +/* Define _fcd. These are the same on every system but UNICOS. */ #define _fcdtocp(desc) (desc) diff --git a/fortran/src/H5f90proto.h b/fortran/src/H5f90proto.h index 5faf4b4..e6f5dd4 100644 --- a/fortran/src/H5f90proto.h +++ b/fortran/src/H5f90proto.h @@ -23,7 +23,7 @@ H5_FCDLL void HD5packFstring(char *src, char *dest, size_t len); /* - * Storage info struct used by H5O_info_t and H5F_info_t + * Storage info struct used by H5O_info_t and H5F_info_t * interoperable with Fortran. */ typedef struct H5_ih_info_t_f { @@ -31,7 +31,7 @@ typedef struct H5_ih_info_t_f { hsize_t heap_size; } H5_ih_info_t_f; -/* Information struct for object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx) +/* Information struct for object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx) * interoperable with Fortran. */ typedef struct H5O_hdr_info_t_f { @@ -51,12 +51,11 @@ typedef struct H5O_hdr_info_t_f { } mesg; } H5O_hdr_info_t_f; -/* Information struct for object (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx) - * interoperable with Fortran. +/* Information struct for object (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx) */ typedef struct H5O_info_t_f { unsigned long fileno; /* File number that object is located in */ - haddr_t_f addr; /* Object address in file */ + H5O_token_t token; /* Token of object in file */ int type; /* Basic object type (group, dataset, etc.) */ int_f rc; /* Reference count of object */ int_f atime[8]; /* Access time */ @@ -64,13 +63,18 @@ typedef struct H5O_info_t_f { int_f ctime[8]; /* Change time */ int_f btime[8]; /* Birth time */ hsize_t num_attrs; /* # of attributes attached to object */ +} H5O_info_t_f; + +/* Information struct for native object (for H5Oget_native_info/H5Oget_native_info_by_name/H5Oget_native_info_by_idx) + */ +typedef struct H5O_native_info_t_f { H5O_hdr_info_t_f hdr; /* Object header information */ /* Extra metadata storage for obj & attributes */ struct { H5_ih_info_t_f obj; /* v1/v2 B-tree & local/fractal heap for groups, B-tree for chunked datasets */ H5_ih_info_t_f attr; /* v2 B-tree & heap for attributes */ } meta_size; -} H5O_info_t_f; +} H5O_native_info_t_f; /* @@ -312,12 +316,12 @@ H5_FCDLL int_f h5tconvert_c(hid_t_f *src_id, hid_t_f *dst_id, size_t_f *nelmts, H5_FCDLL int_f h5oopen_c(hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *lapl_id, hid_t_f *obj_id); H5_FCDLL int_f h5oclose_c(hid_t_f *object_id ); -H5_FCDLL int_f h5oopen_by_addr_c(hid_t_f *loc_id, haddr_t_f *addr, hid_t_f *obj_id); +H5_FCDLL int_f h5oopen_by_token_c(hid_t_f *loc_id, H5O_token_t *token, hid_t_f *obj_id); H5_FCDLL int_f h5olink_c(hid_t_f *object_id, hid_t_f *new_loc_id, _fcd name, size_t_f *namelen, hid_t_f *lcpl_id, hid_t_f *lapl_id); -H5_FCDLL int_f h5ovisit_c(hid_t_f *group_id, int_f *index_type, int_f *order, H5O_iterate_t op, void *op_data, int_f *fields); +H5_FCDLL int_f h5ovisit_c(hid_t_f *group_id, int_f *index_type, int_f *order, H5O_iterate2_t op, void *op_data, int_f *fields); H5_FCDLL int_f h5ovisit_by_name_c(hid_t_f *loc_id, _fcd object_name, size_t_f *namelen, int_f *index_type, int_f *order, - H5O_iterate_t op, void *op_data, hid_t_f *lapl_id, int_f *fields ); + H5O_iterate2_t op, void *op_data, hid_t_f *lapl_id, int_f *fields ); H5_FCDLL int_f h5oget_info_c(hid_t_f *object_id, H5O_info_t_f *object_info, int_f *fields); H5_FCDLL int_f h5oget_info_by_idx_c(hid_t_f *loc_id, _fcd group_name, size_t_f *namelen, int_f *index_field, int_f *order, hsize_t_f *n, hid_t_f *lapl_id, H5O_info_t_f *object_info, int_f *fields); @@ -336,6 +340,8 @@ H5_FCDLL int_f h5oopen_by_idx_c(hid_t_f *loc_id, _fcd group_name, size_t_f *gro H5_FCDLL int_f h5oget_comment_c(hid_t_f *object_id, _fcd comment, size_t_f *commentsize, hssize_t_f *bufsize); H5_FCDLL int_f h5oget_comment_by_name_c(hid_t_f *loc_id, _fcd name, size_t_f *name_size, _fcd comment, size_t_f *commentsize, size_t_f *bufsize, hid_t_f *lapl_id); +H5_FCDLL int_f h5otoken_cmp_c(hid_t_f *loc_id, H5O_token_t *token1, + H5O_token_t *token2, int_f *cmp_value); /* * Functions from H5Pf.c */ @@ -568,11 +574,11 @@ H5_FCDLL int_f h5ldelete_by_idx_c(hid_t_f *loc_id, _fcd group_name, size_t_f *gr H5_FCDLL int_f h5lexists_c(hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *lapl_id, int_f *link_exists); H5_FCDLL int_f h5lget_info_c(hid_t_f *link_loc_id, _fcd link_name, size_t_f *link_namelen, int_f *cset, int_f *corder, int_f *corder_valid, int_f *link_type, - haddr_t_f *address, size_t_f *val_size, - hid_t_f *lapl_id); + H5O_token_t *token, size_t_f *val_size, hid_t_f *lapl_id); H5_FCDLL int_f h5lget_info_by_idx_c(hid_t_f *loc_id, _fcd group_name, size_t_f *group_namelen, int_f *index_field, int_f *order, hsize_t_f *n, - int_f *link_type, int_f *corder_valid, int_f *corder, int_f *cset, haddr_t_f *address, size_t_f *val_size, hid_t_f *lapl_id); + int_f *link_type, int_f *corder_valid, int_f *corder, + int_f *cset, H5O_token_t *token, size_t_f *val_size, hid_t_f *lapl_id); H5_FCDLL int_f h5lis_registered_c(int_f *link_cls_id); H5_FCDLL int_f h5lmove_c(hid_t_f *src_loc_id, _fcd src_name, size_t_f *src_namelen, hid_t_f *dest_loc_id, _fcd dest_name, size_t_f *dest_namelen, hid_t_f *lcpl_id, hid_t_f *lapl_id); @@ -582,8 +588,8 @@ H5_FCDLL int_f h5lget_name_by_idx_c(hid_t_f *loc_id, _fcd group_name, size_t_f * H5_FCDLL int_f h5lget_val_c(hid_t_f *link_loc_id, _fcd link_name, size_t_f *link_namelen, size_t_f *size, void *linkval_buff, hid_t_f *lapl_id) ; -H5_FCDLL int_f h5literate_c(hid_t_f *group_id, int_f *index_type, int_f *order, hsize_t_f *idx, H5L_iterate_t op, void *op_data ); -H5_FCDLL int_f h5literate_by_name_c(hid_t_f *loc_id, _fcd name, size_t_f *namelen, int_f *index_type, int_f *order, hsize_t_f *idx, H5L_iterate_t op, void *op_data, hid_t_f *lapl_id); +H5_FCDLL int_f h5literate_c(hid_t_f *group_id, int_f *index_type, int_f *order, hsize_t_f *idx, H5L_iterate2_t op, void *op_data ); +H5_FCDLL int_f h5literate_by_name_c(hid_t_f *loc_id, _fcd name, size_t_f *namelen, int_f *index_type, int_f *order, hsize_t_f *idx, H5L_iterate2_t op, void *op_data, hid_t_f *lapl_id); #endif /* _H5f90proto_H */ diff --git a/fortran/src/H5match_types.c b/fortran/src/H5match_types.c index e39e85a..2a6204d 100644 --- a/fortran/src/H5match_types.c +++ b/fortran/src/H5match_types.c @@ -414,13 +414,19 @@ int main(void) return -1; } - /* Need the buffer size for the fortran derive type 'hdset_reg_ref_t_f03' + /* Need the buffer size for the fortran derived type 'hdset_reg_ref_t_f03' * in order to be interoperable with C's structure, the C buffer size * H5R_DSET_REG_REF_BUF_SIZE is (sizeof(haddr_t)+4) */ - + fprintf(fort_header, " INTEGER, PARAMETER :: H5R_DSET_REG_REF_BUF_SIZE_F = %u\n", H5_SIZEOF_HADDR_T + 4 ); + /* Need the buffer size for the fortran derived type 'h5o_token_t' + * in order to be interoperable with C's structure. + */ + + fprintf(fort_header, " INTEGER, PARAMETER :: H5O_MAX_TOKEN_SIZE_F = %u\n", H5O_MAX_TOKEN_SIZE); + /* Close files */ endCfile(); endFfile(); diff --git a/fortran/src/README b/fortran/src/README index a258e07..f9316b5 100644 --- a/fortran/src/README +++ b/fortran/src/README @@ -87,7 +87,7 @@ Quick overview of the Fortran APIs to the file, a C program will read it as a 6x4 two-dimensional dataset into memory. The HDF5 C utilities h5dump and h5ls display transposed data, if data is written from a Fortran program. - + * Fortran indices are 1 based. ============================ @@ -105,29 +105,29 @@ Procedure to add a new function Procedure for passing C variables to Fortran --------------------------------------------- -(1) Find the C struct name you are interested in: +(1) Find the C struct name you are interested in: (a) src/H5public.h if it is a generic type, i.e. H5_* or - (b) src/H5*public.h if is a specific type, i.e. H5*_ - + (b) src/H5*public.h if is a specific type, i.e. H5*_ + (2) Put that structure into an array that will be passed to fortran in: (a) fortran/src/H5_f.c (add to nh5init_flags_c subroutine) (b) edit fortran/src/H5f90proto.h and edit nh5init_flags_c interface call - + (3) Edit the function call in fortran/src/H5_ff.F90 - (a) edit the call: FUNCTION h5init_flags_c + (a) edit the call: FUNCTION h5init_flags_c (b) edit h5init_flags_c call in h5open_f to match the number of arguments passing - -(4) add the size of the array and array to fortran/src/H5f90global.F90 + +(4) add the size of the array and array to fortran/src/H5f90global.F90 - must match the size found it H5_f.c -NOTE: To just add a default C value argument, do steps (2a) and (4) +NOTE: To just add a default C value argument, do steps (2a) and (4) Procedure for adding a new file to the repository -------------------------------------------------- -Add the name of the file to the: +Add the name of the file to the: (1) Makefile.am located in the same directory as the newfile (2) CMakeLists.txt located in the same directory as the newfile (3) MANIFEST located in the top level directory diff --git a/fortran/src/hdf5_fortrandll.def.in b/fortran/src/hdf5_fortrandll.def.in index e31a582..7e8b611 100644 --- a/fortran/src/hdf5_fortrandll.def.in +++ b/fortran/src/hdf5_fortrandll.def.in @@ -175,7 +175,7 @@ H5O_mp_H5OGET_COMMENT_F H5O_mp_H5OGET_COMMENT_BY_NAME_F H5O_mp_H5OINCR_REFCOUNT_F H5O_mp_H5OLINK_F -H5O_mp_H5OOPEN_BY_ADDR_F +H5O_mp_H5OOPEN_BY_TOKEN_F H5O_mp_H5OOPEN_BY_IDX_F H5O_mp_H5OOPEN_F H5O_mp_H5OSET_COMMENT_F @@ -185,6 +185,7 @@ H5O_mp_H5OGET_INFO_BY_NAME_F H5O_mp_H5OGET_INFO_F H5O_mp_H5OVISIT_BY_NAME_F H5O_mp_H5OVISIT_F +H5O_mp_H5OTOKEN_CMP_F ; H5P H5P_mp_H5PCREATE_F H5P_mp_H5PSET_PRESERVE_F @@ -459,6 +460,7 @@ H5VL_mp_H5VLREGISTER_CONNECTOR_BY_NAME_F H5VL_mp_H5VLREGISTER_CONNECTOR_BY_VALUE_F H5VL_mp_H5VLIS_CONNECTOR_REGISTERED_F H5VL_mp_H5VLGET_CONNECTOR_ID_F +H5VL_mp_H5VLGET_CONNECTOR_ID_BY_NAME_F H5VL_mp_H5VLGET_CONNECTOR_NAME_F H5VL_mp_H5VLCLOSE_F H5VL_mp_H5VLUNREGISTER_CONNECTOR_F |