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Diffstat (limited to 'fortran/test/tH5O_F03.f90')
| -rw-r--r-- | fortran/test/tH5O_F03.f90 | 547 |
1 files changed, 547 insertions, 0 deletions
diff --git a/fortran/test/tH5O_F03.f90 b/fortran/test/tH5O_F03.f90 new file mode 100644 index 0000000..f060a7d --- /dev/null +++ b/fortran/test/tH5O_F03.f90 @@ -0,0 +1,547 @@ +!****h* root/fortran/test/tH5O_F03.f90 +! +! NAME +! tH5O_F03.f90 +! +! FUNCTION +! Test FORTRAN HDF5 H5O APIs which are dependent on FORTRAN 2003 +! features. +! +! COPYRIGHT +! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * +! Copyright by The HDF Group. * +! Copyright by the Board of Trustees of the University of Illinois. * +! All rights reserved. * +! * +! This file is part of HDF5. The full HDF5 copyright notice, including * +! terms governing use, modification, and redistribution, is contained in * +! the files COPYING and Copyright.html. COPYING can be found at the root * +! of the source code distribution tree; Copyright.html can be found at the * +! root level of an installed copy of the electronic HDF5 document set and * +! is linked from the top-level documents page. It can also be found at * +! http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * +! access to either file, you may request a copy from help@hdfgroup.org. * +! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * +! +!***** + +! ***************************************** +! *** H 5 O T E S T S +! ***************************************** +MODULE visit_cb + + USE HDF5 + USE ISO_C_BINDING + + IMPLICIT NONE + + INTEGER, PARAMETER :: info_size = 9 + + !------------------------------------------------------------------------- + ! Function: visit_obj_cb + ! + ! Purpose: Callback routine for visiting objects in a file + ! + ! Return: Success: 0 + ! Failure: -1 + ! + ! Programmer: M.S. Breitenfeld + ! July 12, 2012 + ! Adopted from C test. + ! + !------------------------------------------------------------------------- + ! + ! Object visit structs + TYPE, bind(c) :: obj_visit_t + CHARACTER(LEN=1), DIMENSION(1:180) :: path ! Path to object + INTEGER :: type_obj ! type of object + END TYPE obj_visit_t + + TYPE, bind(c) :: ovisit_ud_t + INTEGER :: idx ! Index in object visit structure + TYPE(obj_visit_t), DIMENSION(1:info_size) :: info ! Pointer to the object visit structure to use + END TYPE ovisit_ud_t + +CONTAINS + + INTEGER FUNCTION visit_obj_cb( group_id, name, oinfo, op_data) bind(C) + + IMPLICIT NONE + + INTEGER(HID_T) :: group_id + CHARACTER(LEN=1), DIMENSION(1:180) :: name + TYPE(h5o_info_t) :: oinfo + TYPE(ovisit_ud_t) :: op_data + + INTEGER :: len, i + INTEGER :: idx + + visit_obj_cb = 0 + + ! Since the name is generated in C and passed to a Fortran string, it + ! will be NULL terminated, so we need to find the end of the string. + + len = 1 + DO len = 1, 180 + IF(name(len) .EQ. C_NULL_CHAR) EXIT + ENDDO + + len = len - 1 + + ! Check for correct object information + + idx = op_data%idx + + DO i = 1, len + IF(op_data%info(idx)%path(i)(1:1) .NE. name(i)(1:1))THEN + visit_obj_cb = -1 + RETURN + ENDIF + + IF(op_data%info(idx)%type_obj .NE. oinfo%type)THEN + visit_obj_cb = -1 + RETURN + ENDIF + + ENDDO + + ! Advance to next location in expected output + op_data%idx = op_data%idx + 1 + + END FUNCTION visit_obj_cb + +END MODULE visit_cb + +!/**************************************************************** +!** +!** test_h5o_refcount(): Test H5O refcounting functions. +!** +!****************************************************************/ + +SUBROUTINE test_h5o_refcount(total_error) + + USE HDF5 + USE ISO_C_BINDING + IMPLICIT NONE + + INTEGER, INTENT(INOUT) :: total_error + + CHARACTER(LEN=11), PARAMETER :: FILENAME = "th5o_ref.h5" + INTEGER, PARAMETER :: DIM0 = 5 + INTEGER, PARAMETER :: DIM1 = 10 + INTEGER(hid_t) :: fid ! HDF5 File ID + INTEGER(hid_t) :: grp, dset, dtype, dspace ! Object identifiers + TYPE(h5o_info_t) :: oinfo ! Object info struct + INTEGER(hsize_t), DIMENSION(1:2) :: dims + INTEGER :: error ! Value returned from API calls + + ! Create a new HDF5 file + CALL h5fcreate_f(FILENAME,H5F_ACC_TRUNC_F,fid,error) + CALL check("h5fcreate_f", error, total_error) + + ! Create a group, dataset, and committed datatype within the file + ! Create the group + CALL h5gcreate_f(fid, "group", grp, error) + CALL check("h5gcreate_f",error, total_error) + + ! Commit the type inside the group + CALL h5tcopy_f(H5T_NATIVE_INTEGER, dtype, error) + CALL check("H5Tcopy_f",error, total_error) + CALL h5tcommit_f(fid, "datatype", dtype, error) + CALL check("h5tcommit_f", error, total_error) + + ! Create the data space for the dataset. + dims(1) = DIM0 + dims(2) = DIM1 + + CALL h5screate_simple_f(2, dims, dspace, error) + CALL check("h5screate_simple_f", error, total_error) + + ! Create the dataset. + CALL h5dcreate_f(fid, "dataset", H5T_NATIVE_INTEGER, dspace, dset, error) + CALL check("h5dcreate_f", error, total_error) + CALL h5sclose_f(dspace, error) + CALL check("h5sclose_f", error, total_error) + + ! Get ref counts for each object. They should all be 1, since each object has a hard link. + CALL h5oget_info_by_name_f(fid, "group", oinfo, error) + CALL check("h5oget_info_by_name_f", error, total_error) + IF(oinfo%rc.NE.1)THEN + CALL check("h5oget_info_by_name_f", -1, total_error) + ENDIF + CALL h5oget_info_by_name_f(fid, "datatype", oinfo, error) + CALL check("h5oget_info_by_name_f", error, total_error) + IF(oinfo%rc.NE.1)THEN + CALL check("h5oget_info_by_name_f", -1, total_error) + ENDIF + CALL h5oget_info_by_name_f(fid, "dataset", oinfo, error) + CALL check("h5oget_info_by_name_f", error, total_error) + IF(oinfo%rc.NE.1)THEN + CALL check("h5oget_info_by_name_f", -1, total_error) + ENDIF + + ! Check h5oget_info + CALL h5oget_info_f(grp, oinfo, error) + CALL check("h5oget_info_f", error, total_error) + IF(oinfo%rc.NE.1)THEN + CALL check("h5oget_info_f", -1, total_error) + ENDIF + IF(oinfo%type.NE.H5O_TYPE_GROUP_F)THEN + CALL check("h5oget_info_f", -1, total_error) + ENDIF + + ! Increment each object's reference count. + CALL h5oincr_refcount_f(grp, error) + CALL check("h5oincr_refcount_f", error, total_error) + CALL h5oincr_refcount_f(dtype, error) + CALL check("h5oincr_refcount_f", error, total_error) + CALL h5oincr_refcount_f(dset, error) + CALL check("h5oincr_refcount_f", error, total_error) + + ! Get ref counts for each object. They should all be 2 now. + CALL h5oget_info_by_name_f(fid, "group", oinfo, error) + CALL check("h5oget_info_by_name_f", error, total_error) + IF(oinfo%rc.NE.2)THEN + CALL check("h5oget_info_by_name_f", -1, total_error) + ENDIF + CALL h5oget_info_by_name_f(fid, "datatype", oinfo, error) + CALL check("h5oget_info_by_name_f", error, total_error) + IF(oinfo%rc.NE.2)THEN + CALL check("h5oget_info_by_name_f", -1, total_error) + ENDIF + CALL h5oget_info_by_name_f(fid, "dataset", oinfo, error) + CALL check("h5oget_info_by_name_f", error, total_error) + IF(oinfo%rc.NE.2)THEN + CALL check("h5oget_info_by_name_f", -1, total_error) + ENDIF + + ! Decrement the reference counts and check that they decrease back to 1. + CALL h5odecr_refcount_f(grp, error) + CALL check("h5oincr_refcount_f", error, total_error) + CALL h5odecr_refcount_f(dtype, error) + CALL check("h5oincr_refcount_f", error, total_error) + CALL h5odecr_refcount_f(dset, error) + CALL check("h5oincr_refcount_f", error, total_error) + + CALL h5oget_info_by_name_f(fid, "group", oinfo, error) + CALL check("h5oget_info_by_name_f", error, total_error) + IF(oinfo%rc.NE.1)THEN + CALL check("h5oget_info_by_name_f", -1, total_error) + ENDIF + CALL h5oget_info_by_name_f(fid, "datatype", oinfo, error) + CALL check("h5oget_info_by_name_f", error, total_error) + IF(oinfo%rc.NE.1)THEN + CALL check("h5oget_info_by_name_f", -1, total_error) + ENDIF + CALL h5oget_info_by_name_f(fid, "dataset", oinfo, error) + CALL check("h5oget_info_by_name_f", error, total_error) + IF(oinfo%rc.NE.1)THEN + CALL check("h5oget_info_by_name_f", -1, total_error) + ENDIF + + CALL h5gclose_f(grp, error) + CALL check("h5gclose_f",error, total_error) + CALL h5tclose_f(dtype, error) + CALL check("h5tclose_f",error, total_error) + CALL h5dclose_f(dset, error) + CALL check("h5dclose_f",error, total_error) + CALL h5fclose_f(fid, error) + CALL check("h5fclose_f",error, total_error) + +END SUBROUTINE test_h5o_refcount + +!**************************************************************** +!** +!** test_h5o_refcount(): Test H5O visit functions. +!** +!**************************************************************** + +SUBROUTINE obj_visit(total_error) + + USE HDF5 + + USE visit_cb + USE ISO_C_BINDING + IMPLICIT NONE + + INTEGER, INTENT(INOUT) :: total_error + + TYPE(ovisit_ud_t), TARGET :: udata ! User-data for visiting + INTEGER(hid_t) :: fid = -1 + INTEGER(hid_t) :: gid = -1 ! Group ID + TYPE(C_PTR) :: f_ptr + TYPE(C_FUNPTR) :: fun_ptr + CHARACTER(LEN=180) :: object_name + INTEGER :: ret_val + INTEGER :: error + + ! Construct "interesting" file to visit + CALL build_visit_file(fid) + + ! Inialize udata for testing purposes + udata%info(1)%path(1:1) ="." + udata%info(1)%type_obj = H5O_TYPE_GROUP_F + udata%info(2)%path(1:12) = & + (/"D","a","t","a","s","e","t","_","z","e","r","o"/) + udata%info(2)%type_obj =H5O_TYPE_DATASET_F + udata%info(3)%path(1:6) = & + (/"G","r","o","u","p","1"/) + udata%info(3)%type_obj = H5O_TYPE_GROUP_F + udata%info(4)%path(1:18) =& + (/"G","r","o","u","p","1","/","D","a","t","a","s","e","t","_","o","n","e"/) + udata%info(4)%type_obj = H5O_TYPE_DATASET_F + udata%info(5)%path(1:13) =& + (/"G","r","o","u","p","1","/","G","r","o","u","p","2"/) + udata%info(5)%type_obj = H5O_TYPE_GROUP_F + udata%info(6)%path(1:25) =& + (/"G","r","o","u","p","1","/","G","r","o","u","p","2","/","D","a","t","a","s","e","t","_","t","w","o"/) + udata%info(6)%type_obj = H5O_TYPE_DATASET_F + udata%info(7)%path(1:22) =& + (/"G","r","o","u","p","1","/","G","r","o","u","p","2","/","T","y","p","e","_","t","w","o"/) + udata%info(7)%type_obj = H5O_TYPE_NAMED_DATATYPE_F + udata%info(8)%path(1:15) =& + (/"G","r","o","u","p","1","/","T","y","p","e","_","o","n","e"/) + udata%info(8)%type_obj = H5O_TYPE_NAMED_DATATYPE_F + udata%info(9)%path(1:9) =& + (/"T","y","p","e","_","z","e","r","o"/) + udata%info(9)%type_obj = H5O_TYPE_NAMED_DATATYPE_F + + ! Visit all the objects reachable from the root group (with file ID) + udata%idx = 1 + + fun_ptr = C_FUNLOC(visit_obj_cb) + f_ptr = C_LOC(udata) + + ! Test h5ovisit_f + CALL h5ovisit_f(fid, H5_INDEX_NAME_F, H5_ITER_INC_F, fun_ptr, f_ptr, ret_val, error) + CALL check("h5ovisit_f", error, total_error) + IF(ret_val.LT.0)THEN + CALL check("h5ovisit_f", -1, total_error) + ENDIF + + ! Test h5ovisit_by_name_f + + object_name = "/" + udata%idx = 1 + + CALL h5ovisit_by_name_f(fid, object_name, H5_INDEX_NAME_F, H5_ITER_INC_F, fun_ptr, f_ptr, ret_val, error) + CALL check("h5ovisit_by_name_f", error, total_error) + IF(ret_val.LT.0)THEN + CALL check("h5ovisit_by_name_f", -1, total_error) + ENDIF + + CALL h5fclose_f(fid, error) + CALL check("h5fclose_f",error, total_error) + +END SUBROUTINE obj_visit + +!**************************************************************** +!** +!** test_h5o_refcount(): Test H5O info functions. +!** +!**************************************************************** + +SUBROUTINE obj_info(total_error) + + USE HDF5 + USE ISO_C_BINDING + IMPLICIT NONE + + INTEGER, INTENT(INOUT) :: total_error + + INTEGER(hid_t) :: fid = -1 ! File ID + INTEGER(hid_t) :: gid = -1, gid2 = -1 ! Group IDs + INTEGER(hid_t) :: did ! Dataset ID + INTEGER(hid_t) :: sid ! Dataspace ID + TYPE(hobj_ref_t_f), TARGET :: wref ! Reference to write + TYPE(hobj_ref_t_f), TARGET :: rref ! Reference to read + TYPE(H5O_info_t) :: oinfo ! Object info struct + INTEGER :: count = 0 ! Count within iterated group + INTEGER :: error + TYPE(C_PTR) :: f_ptr + + CHARACTER(LEN=6) :: GROUPNAME = "/group" + CHARACTER(LEN=6) :: GROUPNAME2 = "group2" + CHARACTER(LEN=6) :: GROUPNAME3 = "group3" + CHARACTER(LEN=5) :: DSETNAME = "/dset" + CHARACTER(LEN=5) :: DSETNAME2 = "dset2" + + ! Create file with a group and a dataset containing an object reference to the group + CALL h5fcreate_f("get_info.h5", H5F_ACC_TRUNC_F, fid, error) + CALL check("h5fcreate_f",error, total_error) + + ! Create dataspace to use for dataset + CALL h5screate_f(H5S_SCALAR_F, sid, error) + CALL check("h5screate_f",error,total_error) + + ! Create group to refer to + CALL h5gcreate_f(fid, GROUPNAME, gid, error) + CALL check("h5gcreate_f",error,total_error) + + ! Create nested groups + CALL h5gcreate_f(gid, GROUPNAME2, gid2, error) + CALL check("h5gcreate_f",error,total_error) + CALL h5gclose_f(gid2, error) + CALL check("h5gclose_f",error,total_error) + + CALL h5gcreate_f(gid, GROUPNAME3, gid2, error) + CALL check("h5gcreate_f",error,total_error) + CALL h5gclose_f(gid2, error) + CALL check("h5gclose_f",error,total_error) + + ! Create bottom dataset + CALL h5dcreate_f(gid, DSETNAME2, H5T_NATIVE_INTEGER, sid, did, error) + CALL check("h5dcreate_f",error, total_error) + + CALL h5dclose_f(did, error) + CALL check("h5dclose_f", error, total_error) + + CALL h5gclose_f(gid, error) + CALL check("h5gclose_f",error,total_error) + + ! Create dataset + CALL h5dcreate_f(fid, DSETNAME, H5T_STD_REF_OBJ, sid, did, error) + CALL check("h5dcreate_f",error, total_error) + + f_ptr = C_LOC(wref) + + ! Create reference to group + CALL h5rcreate_f(fid, GROUPNAME, H5R_OBJECT_F, f_ptr, error) + CALL check("h5rcreate_f",error, total_error) + + ! Write reference to disk + CALL h5dwrite_f(did, H5T_STD_REF_OBJ, f_ptr, error) + CALL check("h5dwrite_f",error, total_error) + + ! Close objects + CALL h5dclose_f(did, error) + CALL check("h5dclose_f", error, total_error) + CALL h5sclose_f(sid, error) + CALL check("h5sclose_f", error, total_error) + CALL h5fclose_f(fid, error) + CALL check("h5fclose_f", error, total_error) + + ! Re-open file + CALL h5fopen_f("get_info.h5", H5F_ACC_RDWR_F, fid, error) + CALL check("h5fopen_f", error, total_error) + + ! Re-open dataset + CALL h5dopen_f(fid, DSETNAME, did, error) + CALL check("h5dopen_f", error, total_error) + + ! Read in the reference + + f_ptr = C_LOC(rref) + + CALL h5dread_f(did, H5T_STD_REF_OBJ, f_ptr, error) + CALL check("H5Dread_f",error, total_error) + + ! Dereference to get the group + + CALL h5rdereference_f(did, H5R_OBJECT_F, f_ptr, gid, error) + CALL check("h5rdereference_f", error, total_error) + + CALL h5oget_info_by_idx_f(gid, ".", H5_INDEX_NAME_F, H5_ITER_INC_F, 0_hsize_t, oinfo, error) + CALL check("h5oget_info_by_idx_f", error, total_error) + + IF(oinfo%rc.NE.1)THEN + CALL check("h5oget_info_by_idx_f", -1, total_error) + ENDIF + + IF(oinfo%type.NE.H5O_TYPE_DATASET_F)THEN + CALL check("h5oget_info_by_idx_f", -1, total_error) + ENDIF + + ! Close objects + CALL h5dclose_f(did, error) + CALL check("h5dclose_f", error, total_error) + CALL h5gclose_f(gid, error) + CALL check("h5sclose_f", error, total_error) + CALL h5fclose_f(fid, error) + CALL check("h5fclose_f", error, total_error) + +END SUBROUTINE obj_info + +!------------------------------------------------------------------------- +! Function: build_visit_file +! +! Purpose: Build an "interesting" file to use for visiting links & objects +! +! Programmer: M. Scot Breitenfeld +! July 12, 2012 +! NOTE: Adapted from C test. +! +!------------------------------------------------------------------------- +! + +SUBROUTINE build_visit_file(fid) + + USE HDF5 + IMPLICIT NONE + + INTEGER(hid_t) :: fid ! File ID + INTEGER(hid_t) :: gid = -1, gid2 = -1 ! Group IDs + INTEGER(hid_t) :: sid = -1 ! Dataspace ID + INTEGER(hid_t) :: did = -1 ! Dataset ID + INTEGER(hid_t) :: tid = -1 ! Datatype ID + CHARACTER(LEN=20) :: filename = 'visit.h5' + INTEGER :: error + + ! Create file for visiting + CALL H5Fcreate_f(filename, H5F_ACC_TRUNC_F, fid, error) + + ! Create group + CALL H5Gcreate_f(fid, "/Group1", gid, error) + + ! Create nested group + CALL H5Gcreate_f(gid, "Group2", gid2, error) + + ! Close groups + CALL h5gclose_f(gid2, error) + CALL h5gclose_f(gid, error) + + ! Create soft links to groups created + CALL H5Lcreate_soft_f("/Group1", fid, "/soft_one", error) + CALL H5Lcreate_soft_f("/Group1/Group2", fid, "/soft_two", error) + + ! Create dangling soft link + CALL H5Lcreate_soft_f("nowhere", fid, "/soft_dangle", error) + + ! Create hard links to all groups + CALL H5Lcreate_hard_f(fid, "/", fid, "hard_zero", error) + CALL H5Lcreate_hard_f(fid, "/Group1", fid, "hard_one", error) + CALL H5Lcreate_hard_f(fid, "/Group1/Group2", fid, "hard_two", error) + + ! Create loops w/hard links + CALL H5Lcreate_hard_f(fid, "/Group1", fid, "/Group1/hard_one", error) + CALL H5Lcreate_hard_f(fid, "/", fid, "/Group1/Group2/hard_zero", error) + + ! Create dataset in each group + CALL H5Screate_f(H5S_SCALAR_F, sid, error) + + CALL H5Dcreate_f(fid, "/Dataset_zero", H5T_NATIVE_INTEGER, sid, did, error) + CALL H5Dclose_f(did, error) + + CALL H5Dcreate_f(fid, "/Group1/Dataset_one", H5T_NATIVE_INTEGER, sid, did, error) + CALL H5Dclose_f(did, error) + + CALL H5Dcreate_f(fid, "/Group1/Group2/Dataset_two", H5T_NATIVE_INTEGER, sid, did, error) + CALL H5Dclose_f(did, error) + + CALL H5Sclose_f(sid, error) + + ! Create named datatype in each group + CALL H5Tcopy_f(H5T_NATIVE_INTEGER, tid, error) + + CALL H5Tcommit_f(fid, "/Type_zero", tid, error) + CALL H5Tclose_f(tid, error) + + CALL H5Tcopy_f(H5T_NATIVE_INTEGER, tid, error) + CALL H5Tcommit_f(fid, "/Group1/Type_one", tid, error) + CALL H5Tclose_f(tid, error) + + CALL H5Tcopy_f(H5T_NATIVE_INTEGER, tid, error) + CALL H5Tcommit_f(fid, "/Group1/Group2/Type_two", tid, error) + CALL H5Tclose_f(tid, error) + +END SUBROUTINE build_visit_file |