diff options
Diffstat (limited to 'fortran/test')
| -rw-r--r-- | fortran/test/fortranlib_test_F03.F90 | 8 | ||||
| -rw-r--r-- | fortran/test/tH5P_F03.F90 | 472 |
2 files changed, 480 insertions, 0 deletions
diff --git a/fortran/test/fortranlib_test_F03.F90 b/fortran/test/fortranlib_test_F03.F90 index 5b386b9..070cd73 100644 --- a/fortran/test/fortranlib_test_F03.F90 +++ b/fortran/test/fortranlib_test_F03.F90 @@ -174,6 +174,14 @@ PROGRAM fortranlibtest_F03 CALL test_get_file_image(ret_total_error) CALL write_test_status(ret_total_error, ' Testing get file image ', total_error) +! write(*,*) +! write(*,*) '=========================================' +! write(*,*) 'Testing VDS ' +! write(*,*) '=========================================' + + ret_total_error = 0 + CALL test_vds(ret_total_error) + CALL write_test_status(ret_total_error, ' Testing vds ', total_error) WRITE(*,*) diff --git a/fortran/test/tH5P_F03.F90 b/fortran/test/tH5P_F03.F90 index 8982fc2..3cafdcb 100644 --- a/fortran/test/tH5P_F03.F90 +++ b/fortran/test/tH5P_F03.F90 @@ -617,4 +617,476 @@ SUBROUTINE external_test_offset(cleanup,total_error) CALL check("h5_cleanup_f", error, total_error) END SUBROUTINE external_test_offset + +!****h* root/fortran/test/tH5P_F03.f90 +! +! NAME +! test_vds +! +! FUNCTION +! Tests VDS API wrappers +! +! RETURNS: +! Success: 0 +! Failure: number of errors +! +! FORTRAN Programmer: M. Scot Breitenfeld +! February 1, 2016 +! +!------------------------------------------------------------------------- +! +SUBROUTINE test_vds(total_error) + + USE ISO_C_BINDING + IMPLICIT NONE + + INTEGER, INTENT(INOUT) :: total_error + + INTEGER, PARAMETER :: int_kind_8 = SELECTED_INT_KIND(9) !should map to INTEGER*4 on most modern processors + INTEGER, PARAMETER :: int_kind_16 = SELECTED_INT_KIND(18) !should map to INTEGER*8 on most modern processors + + CHARACTER(LEN=6), PARAMETER :: VFILENAME="vds.h5" + CHARACTER(LEN=3), PARAMETER :: DATASET="VDS" + INTEGER :: VDSDIM0 + INTEGER, PARAMETER :: VDSDIM1 = 10 + INTEGER, PARAMETER :: VDSDIM2 = 15 + + INTEGER :: DIM0 + INTEGER, PARAMETER :: DIM0_1= 4 ! Initial size of the source datasets + INTEGER, PARAMETER :: DIM1 = 10 + INTEGER, PARAMETER :: DIM2 = 15 + INTEGER, PARAMETER :: RANK = 3 + INTEGER(hsize_t), PARAMETER :: PLANE_STRIDE = 4 + + CHARACTER(LEN=4), DIMENSION(1:PLANE_STRIDE) :: SRC_FILE = (/"a.h5","b.h5","c.h5","d.h5"/) + CHARACTER(LEN=3), DIMENSION(1:PLANE_STRIDE) :: SRC_DATASET = (/"AAA","BBB","CCC","DDD"/) + + + INTEGER(hid_t) :: vfile, file, src_space, mem_space, vspace, vdset, dset !Handles + INTEGER(hid_t) :: dcpl, dapl + INTEGER :: status, error + INTEGER(hsize_t), DIMENSION(1:3) :: vdsdims = (/4*DIM0_1, VDSDIM1, VDSDIM2/), & + vdsdims_max, & + dims = (/DIM0_1, DIM1, DIM2/), & + memdims = (/DIM0_1, DIM1, DIM2/), & + extdims = (/0, DIM1, DIM2/), & ! Dimensions of the extended source datasets + chunk_dims = (/DIM0_1, DIM1, DIM2/), & + dims_max, & + vdsdims_out, vdsdims_max_out, & + start, & ! Hyperslab parameters + stride, & + count, & + src_count, block + INTEGER(hsize_t), DIMENSION(1:2,1:3) :: vdsdims_out_correct + + INTEGER(hsize_t), DIMENSION(1:3) :: start_out, & !Hyperslab PARAMETER out + stride_out, count_out, count_correct, block_out + INTEGER(hsize_t), DIMENSION(1:3,1:PLANE_STRIDE) :: start_correct + + INTEGER :: i, j + INTEGER :: layout ! Storage layout + INTEGER(size_t) :: num_map ! Number of mappings + INTEGER(size_t) :: len ! Length of the string also a RETURN value + CHARACTER(LEN=180) :: filename + ! Different sized character buffers + CHARACTER(len=LEN(SRC_FILE(1))-3) :: SRC_FILE_LEN_TINY + CHARACTER(len=LEN(SRC_FILE(1))-1) :: SRC_FILE_LEN_SMALL + CHARACTER(len=LEN(SRC_FILE(1))) :: SRC_FILE_LEN_EXACT + CHARACTER(len=LEN(SRC_FILE(1))+1) :: SRC_FILE_LEN_LARGE + CHARACTER(len=LEN(SRC_FILE(1))+10) :: SRC_FILE_LEN_HUGE + CHARACTER(len=LEN(SRC_DATASET(1))) :: SRC_DATASET_LEN_EXACT + + INTEGER(HID_T) :: space_out + + INTEGER :: s_type, virtual_view + INTEGER :: type1, type2 + + CHARACTER(LEN=180) :: dsetname + INTEGER, DIMENSION(DIM0_1*DIM1*DIM2), TARGET :: wdata + TYPE(C_PTR) :: f_ptr + INTEGER(SIZE_T) :: nsize + LOGICAL :: IsRegular + INTEGER(HSIZE_T) :: gap_size + + ! For testing against + vdsdims_out_correct(1,1) = DIM0_1*5 + vdsdims_out_correct(2,1) = DIM0_1*8 + vdsdims_out_correct(1:2,2) = VDSDIM1 + vdsdims_out_correct(1:2,3) = VDSDIM2 + + VDSDIM0 = H5S_UNLIMITED_F + DIM0 = H5S_UNLIMITED_F + vdsdims_max = (/VDSDIM0, VDSDIM1, VDSDIM2/) + dims_max = (/DIM0, DIM1, DIM2/) + + ! + ! Create source files and datasets. + ! + DO i = 1, PLANE_STRIDE + ! + ! Initialize data for i-th source dataset. + DO j = 1, DIM0_1*DIM1*DIM2 + wdata(j) = i + ENDDO + ! + ! Create the source files and datasets. Write data to each dataset and + ! close all resources. + CALL h5fcreate_f(SRC_FILE(i), H5F_ACC_TRUNC_F, file, status) + CALL check("h5fcreate_f", error, total_error) + + CALL h5screate_simple_f(RANK, dims, src_space, error, dims_max) + CALL check("h5screate_simple_f", error, total_error) + CALL h5pcreate_f(H5P_DATASET_CREATE_F, dcpl, error) + CALL check("h5pcreate_f", error, total_error) + CALL h5pset_chunk_f(dcpl, RANK, chunk_dims, error) + CALL check("h5pset_chunk_f",error, total_error) + + CALL h5dcreate_f(file, SRC_DATASET(i), H5T_NATIVE_INTEGER, src_space, dset, error, dcpl, H5P_DEFAULT_F, H5P_DEFAULT_F) + CALL check("h5dcreate_f",error, total_error) + f_ptr = C_LOC(wdata(1)) + CALL H5Dwrite_f(dset, H5T_NATIVE_INTEGER, f_ptr, error) + CALL check("H5Dwrite_f",error, total_error) + CALL H5Sclose_f(src_space, error) + CALL check("H5Sclose_f",error, total_error) + CALL H5Pclose_f(dcpl, error) + CALL check("H5Pclose_f",error, total_error) + CALL H5Dclose_f(dset, error) + CALL check("H5Dclose_f",error, total_error) + CALL H5Fclose_f(file, error) + CALL check("H5Fclose_f",error, total_error) + ENDDO + + CALL h5fcreate_f(VFILENAME, H5F_ACC_TRUNC_F, vfile, error) + CALL check("h5fcreate_f", error, total_error) + + ! Create VDS dataspace. + CALL H5Screate_simple_f(RANK, vdsdims, vspace, error, vdsdims_max) + CALL check("H5Screate_simple_f", error, total_error) + + ! Create dataspaces for the source dataset. + CALL H5Screate_simple_f(RANK, dims, src_space, error, dims_max) + CALL check("H5Screate_simple_f", error, total_error) + + ! Create VDS creation property + CALL H5Pcreate_f (H5P_DATASET_CREATE_F, dcpl, error) + CALL check("H5Pcreate_f", error, total_error) + + ! Initialize hyperslab values + start(1:3) = 0 + stride(1:3) = (/PLANE_STRIDE,1_hsize_t,1_hsize_t/) ! we will select every fifth plane in VDS + count(1:3) = (/H5S_UNLIMITED_F,1_hsize_t,1_hsize_t/) + src_count(1:3) = (/H5S_UNLIMITED_F,1_hsize_t,1_hsize_t/) + block(1:3) = (/1, DIM1, DIM2/) + + ! + ! Build the mappings + ! + start_correct = 0 + CALL H5Sselect_hyperslab_f(src_space, H5S_SELECT_SET_F, start, src_count, error, block=block) + CALL check("H5Sselect_hyperslab_f", error, total_error) + DO i = 1, PLANE_STRIDE + start_correct(1,i) = start(1) + CALL H5Sselect_hyperslab_f(vspace, H5S_SELECT_SET_F, start, count, error, stride=stride, block=block) + CALL check("H5Sselect_hyperslab_f", error, total_error) + + IF(i.eq.1)THEN ! check src_file and src_dataset with trailing blanks + CALL H5Pset_virtual_f (dcpl, vspace, SRC_FILE(i)//" ", SRC_DATASET(i)//" ", src_space, error) + ELSE + CALL H5Pset_virtual_f (dcpl, vspace, SRC_FILE(i), SRC_DATASET(i), src_space, error) + ENDIF + CALL check("H5Pset_virtual_f", error, total_error) + start(1) = start(1) + 1 + ENDDO + + CALL H5Sselect_none_f(vspace, error) + CALL check("H5Sselect_none_f", error, total_error) + + ! Create a virtual dataset + CALL H5Dcreate_f(vfile, DATASET, H5T_NATIVE_INTEGER, vspace, vdset, error, dcpl, H5P_DEFAULT_F, H5P_DEFAULT_F) + CALL check("H5Dcreate_f", error, total_error) + CALL H5Sclose_f(vspace, error) + CALL check("H5Sclose_f", error, total_error) + CALL H5Sclose_f(src_space, error) + CALL check("H5Sclose_f", error, total_error) + CALL H5Pclose_f(dcpl, error) + CALL check("H5Pclose_f", error, total_error) + + ! Let's add data to the source datasets and check new dimensions for VDS + ! We will add only one plane to the first source dataset, two planes to the + ! second one, three to the third, and four to the forth. + + DO i = 1, PLANE_STRIDE + ! + ! Initialize data for i-th source dataset. + DO j = 1, i*DIM1*DIM2 + wdata(j) = 10*i + ENDDO + + ! + ! Open the source files and datasets. Append data to each dataset and + ! close all resources. + CALL H5Fopen_f (SRC_FILE(i), H5F_ACC_RDWR_F, file, error) + CALL check("H5Fopen_f", error, total_error) + CALL H5Dopen_f (file, SRC_DATASET(i), dset, error) + CALL check("H5Dopen_f", error, total_error) + extdims(1) = DIM0_1+i + CALL H5Dset_extent_f(dset, extdims, error) + CALL check("H5Dset_extent_f", error, total_error) + CALL H5Dget_space_f(dset, src_space, error) + CALL check("H5Dget_space_f", error, total_error) + + start(1:3) = (/DIM0_1,0,0/) + count(1:3) = 1 + block(1:3) = (/i, DIM1, DIM2/) + + memdims(1) = i + + CALL H5Screate_simple_f(RANK, memdims, mem_space, error) + CALL check("H5Screate_simple_f", error, total_error) + + CALL H5Sselect_hyperslab_f(src_space, H5S_SELECT_SET_F, start,count, error,block=block) + CALL check("H5Sselect_hyperslab_f", error, total_error) + f_ptr = C_LOC(wdata(1)) + CALL H5Dwrite_f(dset, H5T_NATIVE_INTEGER, f_ptr, error, mem_space, src_space, H5P_DEFAULT_F) + CALL check("H5Dwrite_f", error, total_error) + CALL H5Sclose_f(src_space, error) + CALL check("H5Sclose_f", error, total_error) + call H5Dclose_f(dset, error) + CALL check("H5Dclose_f", error, total_error) + call H5Fclose_f(file, error) + CALL check("H5Fclose_f", error, total_error) + ENDDO + + call H5Dclose_f(vdset, error) + CALL check("H5Dclose_f", error, total_error) + call H5Fclose_f(vfile, error) + CALL check("H5Fclose_f", error, total_error) + + ! + ! begin the read section + ! + ! Open file and dataset using the default properties. + CALL H5Fopen_f(VFILENAME, H5F_ACC_RDONLY_F, vfile, error) + CALL check("H5Fopen_f", error, total_error) + + ! + ! Open VDS using different access properties to use max or + ! min extents depending on the sizes of the underlying datasets + CALL H5Pcreate_f(H5P_DATASET_ACCESS_F, dapl, error) + CALL check("H5Pcreate_f", error, total_error) + + DO i = 1, 2 + + IF(i.NE.1)THEN + CALL H5Pset_virtual_view_f(dapl, H5D_VDS_LAST_AVAILABLE_F, error) + CALL check("H5Pset_virtual_view_f", error, total_error) + ELSE + CALL H5Pset_virtual_view_f(dapl, H5D_VDS_FIRST_MISSING_F, error) + CALL check("H5Pset_virtual_view_f", error, total_error) + ENDIF + + CALL H5Dopen_f(vfile, DATASET, vdset, error, dapl) + CALL check("H5Dopen_f", error, total_error) + + ! Let's get space of the VDS and its dimension we should get 32(or 20)x10x10 + CALL H5Dget_space_f(vdset, vspace, error) + CALL check("H5Dget_space_f", error, total_error) + CALL H5Sget_simple_extent_dims_f(vspace, vdsdims_out, vdsdims_max_out, error) + CALL check("H5Sget_simple_extent_dims_f", error, total_error) + + ! check VDS dimensions + DO j = 1, RANK + IF(vdsdims_out(j).NE.vdsdims_out_correct(i,j))THEN + total_error = total_error + 1 + EXIT + ENDIF + ENDDO + + CALL H5Pget_virtual_view_f(dapl, virtual_view, error) + CALL check("h5pget_virtual_view_f", error, total_error) + + IF(i.EQ.1)THEN + IF(virtual_view .NE. H5D_VDS_FIRST_MISSING_F)THEN + total_error = total_error + 1 + ENDIF + ELSE + IF(virtual_view .NE. H5D_VDS_LAST_AVAILABLE_F)THEN + total_error = total_error + 1 + ENDIF + + ENDIF + + ! Close + CALL H5Dclose_f(vdset, error) + CALL check("H5Dclose_f", error, total_error) + CALL H5Sclose_f(vspace, error) + CALL check("H5Sclose_f", error, total_error) + ENDDO + + CALL H5Dopen_f(vfile, DATASET, vdset, error) + CALL check("H5Dopen_f", error, total_error) + + ! + ! Get creation property list and mapping properties. + ! + CALL H5Dget_create_plist_f (vdset, dcpl, error) + CALL check("H5Dget_create_plist_f", error, total_error) + + ! + ! Get storage layout. + CALL H5Pget_layout_f(dcpl, layout, error) + CALL check("H5Pget_layout_f", error, total_error) + + IF (H5D_VIRTUAL_F .NE. layout) THEN + PRINT*,"Wrong layout found" + total_error = total_error + 1 + ENDIF + + ! + ! Find number of mappings. + + CALL H5Pget_virtual_count_f(dcpl, num_map, error) + CALL check("H5Pget_virtual_count_f", error, total_error) + + IF(num_map.NE.4_size_t)THEN + PRINT*,"Number of mappings is incorrect" + total_error = total_error + 1 + ENDIF + ! + ! Get mapping parameters for each mapping. + ! + DO i = 1, num_map + CALL H5Pget_virtual_vspace_f(dcpl, INT(i-1,size_t), vspace, error) + CALL check("H5Pget_virtual_vspace_f", error, total_error) + + CALL h5sget_select_type_f(vspace, s_type, error) + CALL check("h5sget_select_type_f", error, total_error) + IF(s_type.EQ.H5S_SEL_HYPERSLABS_F)THEN + CALL H5Sis_regular_hyperslab_f(vspace, IsRegular, error) + CALL check("H5Sis_regular_hyperslab_f", error, total_error) + + IF(IsRegular)THEN + CALL H5Sget_regular_hyperslab_f(vspace, start_out, stride_out, count_out, block_out, error) + CALL check("H5Sget_regular_hyperslab_f", error, total_error) + DO j = 1, 3 + IF(start_out(j).NE.start_correct(j,i) .OR. & + stride_out(j).NE.stride(j).OR. & + count_out(j).NE.src_count(j))THEN + total_error = total_error + 1 + EXIT + ENDIF + ENDDO + ENDIF + END IF + + ! Get source file name + CALL H5Pget_virtual_filename_f(dcpl, INT(i-1, size_t), SRC_FILE_LEN_EXACT, error, nsize) + CALL check("H5Pget_virtual_count_f", error, total_error) + + IF(nsize.NE.LEN(SRC_FILE_LEN_EXACT))THEN + PRINT*,"virtual filenname size is incorrect" + total_error = total_error + 1 + ENDIF + ! check passing a buffer that is very small + CALL H5Pget_virtual_filename_f(dcpl, INT(i-1, size_t), SRC_FILE_LEN_TINY, error) + CALL check("H5Pget_virtual_filename_f", error, total_error) + IF(SRC_FILE_LEN_TINY.NE.SRC_FILE(i)(1:LEN(SRC_FILE_LEN_TINY)))THEN + PRINT*,"virtual filenname returned is incorrect" + total_error = total_error + 1 + ENDIF + ! check passing a buffer that small by one + CALL H5Pget_virtual_filename_f(dcpl, INT(i-1, size_t), SRC_FILE_LEN_SMALL, error) + CALL check("H5Pget_virtual_filename_f", error, total_error) + IF(SRC_FILE_LEN_SMALL.NE.SRC_FILE(i)(1:LEN(SRC_FILE_LEN_SMALL)))THEN + PRINT*,"virtual filenname returned is incorrect" + total_error = total_error + 1 + ENDIF + ! check passing a buffer that is exact + CALL H5Pget_virtual_filename_f(dcpl, INT(i-1, size_t), SRC_FILE_LEN_EXACT, error) + CALL check("H5Pget_virtual_filename_f", error, total_error) + IF(SRC_FILE_LEN_EXACT.NE.SRC_FILE(i)(1:LEN(SRC_FILE_LEN_EXACT)))THEN + PRINT*,"virtual filenname returned is incorrect" + total_error = total_error + 1 + ENDIF + ! check passing a buffer that bigger by one + CALL H5Pget_virtual_filename_f(dcpl, INT(i-1, size_t), SRC_FILE_LEN_LARGE, error) + CALL check("H5Pget_virtual_filename_f", error, total_error) + IF(SRC_FILE_LEN_LARGE(1:LEN(SRC_FILE_LEN_EXACT)).NE.SRC_FILE(i)(1:LEN(SRC_FILE_LEN_EXACT)).AND. & + SRC_FILE_LEN_LARGE(LEN(SRC_FILE_LEN_EXACT):).NE.'')THEN + PRINT*,"virtual filenname returned is incorrect" + total_error = total_error + 1 + ENDIF + ! check passing a buffer that is very big + CALL H5Pget_virtual_filename_f(dcpl, INT(i-1, size_t), SRC_FILE_LEN_HUGE, error) + CALL check("H5Pget_virtual_filename_f", error, total_error) + IF(SRC_FILE_LEN_HUGE(1:LEN(SRC_FILE_LEN_EXACT)).NE.SRC_FILE(i)(1:LEN(SRC_FILE_LEN_EXACT)).AND. & + SRC_FILE_LEN_HUGE(LEN(SRC_FILE_LEN_EXACT):).NE.'')THEN + PRINT*,"virtual filenname returned is incorrect" + total_error = total_error + 1 + ENDIF + ! Get source dataset name + CALL H5Pget_virtual_dsetname_f(dcpl, INT(i-1, size_t), SRC_DATASET_LEN_EXACT, error, nsize) + CALL check("H5Pget_virtual_dsetname_f", error, total_error) + + CALL H5Pget_virtual_dsetname_f(dcpl, INT(i-1, size_t), SRC_DATASET_LEN_EXACT, error) + CALL check("H5Pget_virtual_dsetname_f", error, total_error) + IF(SRC_DATASET_LEN_EXACT(1:LEN(SRC_DATASET_LEN_EXACT)).NE.SRC_DATASET(i)(1:LEN(SRC_DATASET_LEN_EXACT)).AND. & + SRC_DATASET_LEN_EXACT(LEN(SRC_DATASET_LEN_EXACT):).NE.'')THEN + PRINT*,"virtual dataset returned is incorrect" + total_error = total_error + 1 + ENDIF + + CALL h5pget_virtual_srcspace_f(dcpl, INT(i-1,size_t), space_out, error) + CALL check("H5Pget_virtual_srcspace_f", error, total_error) + + CALL h5sget_select_type_f(space_out, type1, error) + CALL check("H5Sget_select_type_f", error, total_error) + CALL h5sget_select_type_f(vspace, type2, error) + CALL check("H5Sget_select_type_f", error, total_error) + + IF(type1.NE.type2)THEN + total_error = total_error + 1 + ENDIF + + ENDDO + ! + ! Close and release resources. + + ! Clear virtual layout in DCPL + CALL h5pset_layout_f(dcpl, H5D_VIRTUAL_F,error) + CALL check("H5Pset_layout_f", error, total_error) + + CALL H5Pclose_f(dcpl, error) + CALL check("H5Pclose_f", error, total_error) + CALL H5Dclose_f(vdset, error) + CALL check("H5Dclose_f", error, total_error) + + ! Reopen VDS with printf gap set to 1 + + CALL H5Pset_virtual_printf_gap_f(dapl, 1_hsize_t, error) + CALL check("H5Pset_virtual_printf_gap_f", error, total_error) + + CALL H5Dopen_f(vfile, DATASET, vdset, error, dapl) + CALL check("H5Dopen_f", error, total_error) + + CALL H5Pget_virtual_printf_gap_f(dapl, gap_size, error) + CALL check("H5Pget_virtual_printf_gap_f", error, total_error) + + IF(gap_size.NE.1_hsize_t)THEN + PRINT*,"gapsize is incorrect" + total_error = total_error + 1 + ENDIF + + CALL H5Dclose_f(vdset, error) + CALL check("H5Dclose_f", error, total_error) + CALL H5Sclose_f(vspace, error) + CALL check("H5Sclose_f", error, total_error) + CALL H5Pclose_f(dapl, error) + CALL check("H5Pclose_f", error, total_error) + CALL H5Fclose_f(vfile, error) + CALL check("H5Fclose_f", error, total_error) + +END SUBROUTINE test_vds + + END MODULE TH5P_F03 |