diff options
Diffstat (limited to 'fortran')
-rw-r--r-- | fortran/examples/CMakeTests.cmake | 74 | ||||
-rw-r--r-- | fortran/examples/run-fortran-ex.sh.in | 18 | ||||
-rw-r--r-- | fortran/src/CMakeLists.txt | 6 | ||||
-rw-r--r-- | fortran/src/H5Fff.F90 | 93 | ||||
-rw-r--r-- | fortran/src/H5Of.c | 48 | ||||
-rw-r--r-- | fortran/src/H5Off.F90 | 107 | ||||
-rw-r--r-- | fortran/src/H5Pff.F90 | 91 | ||||
-rw-r--r-- | fortran/src/H5Sf.c | 161 | ||||
-rw-r--r-- | fortran/src/H5Sff.F90 | 304 | ||||
-rw-r--r-- | fortran/src/H5_f.c | 11 | ||||
-rw-r--r-- | fortran/src/H5_ff.F90 | 74 | ||||
-rw-r--r-- | fortran/src/H5f90global.F90 | 13 | ||||
-rw-r--r-- | fortran/src/H5f90proto.h | 13 | ||||
-rw-r--r-- | fortran/src/H5match_types.c | 13 | ||||
-rw-r--r-- | fortran/src/hdf5_fortrandll.def.in | 5 | ||||
-rw-r--r-- | fortran/test/CMakeTests.cmake | 72 | ||||
-rw-r--r-- | fortran/test/tH5F.F90 | 1 | ||||
-rw-r--r-- | fortran/test/tH5O_F03.F90 | 390 | ||||
-rw-r--r-- | fortran/test/tH5P.F90 | 52 | ||||
-rw-r--r-- | fortran/testpar/CMakeTests.cmake | 2 |
20 files changed, 912 insertions, 636 deletions
diff --git a/fortran/examples/CMakeTests.cmake b/fortran/examples/CMakeTests.cmake index c3d94b4..efbb209 100644 --- a/fortran/examples/CMakeTests.cmake +++ b/fortran/examples/CMakeTests.cmake @@ -37,7 +37,7 @@ SDScompound.h5 test.h5 ) - if (NOT "${last_test}" STREQUAL "") + if (last_test) set_tests_properties (f90_ex-clear-objects PROPERTIES DEPENDS ${last_test}) endif () set (last_test "f90_ex-clear-objects") @@ -62,7 +62,7 @@ SDScompound.h5 test.h5 ) - if (NOT "${last_test}" STREQUAL "") + if (last_test) set_tests_properties (f90_ex-shared-clear-objects PROPERTIES DEPENDS ${last_test}) endif () set (last_test "f90_ex-shared-clear-objects") @@ -83,7 +83,7 @@ foreach (example ${examples}) -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" ) endif () - if (NOT "${last_test}" STREQUAL "") + if (last_test) set_tests_properties (f90_ex_${example} PROPERTIES DEPENDS ${last_test}) endif () set (last_test "f90_ex_${example}") @@ -102,59 +102,57 @@ foreach (example ${examples}) -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" ) endif () - if (NOT "${last_test}" STREQUAL "") + if (last_test) set_tests_properties (f90_ex-shared_${example} PROPERTIES DEPENDS ${last_test}) endif () set (last_test "f90_ex-shared_${example}") endif () endforeach () -if (HDF5_ENABLE_F2003) - foreach (example ${F2003_examples}) +foreach (example ${F2003_examples}) + if (HDF5_ENABLE_USING_MEMCHECKER) + add_test (NAME f03_ex_${example} COMMAND $<TARGET_FILE:f03_ex_${example}>) + else () + add_test (NAME f03_ex_${example} COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:f03_ex_${example}>" + -D "TEST_ARGS:STRING=" + -D "TEST_EXPECT=0" + -D "TEST_SKIP_COMPARE=TRUE" + -D "TEST_OUTPUT=f03_ex_${example}.txt" + #-D "TEST_REFERENCE=f03_ex_${example}.out" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" + -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + ) + endif () + if (last_test) + set_tests_properties (f03_ex_${example} PROPERTIES DEPENDS ${last_test}) + endif () + set (last_test "f03_ex_${example}") + if (BUILD_SHARED_LIBS) if (HDF5_ENABLE_USING_MEMCHECKER) - add_test (NAME f03_ex_${example} COMMAND $<TARGET_FILE:f03_ex_${example}>) + add_test (NAME f03_ex-shared_${example} COMMAND $<TARGET_FILE:f03_ex_${example}-shared>) else () - add_test (NAME f03_ex_${example} COMMAND "${CMAKE_COMMAND}" - -D "TEST_PROGRAM=$<TARGET_FILE:f03_ex_${example}>" + add_test (NAME f03_ex-shared_${example} COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:f03_ex_${example}-shared>" -D "TEST_ARGS:STRING=" -D "TEST_EXPECT=0" -D "TEST_SKIP_COMPARE=TRUE" - -D "TEST_OUTPUT=f03_ex_${example}.txt" - #-D "TEST_REFERENCE=f03_ex_${example}.out" + -D "TEST_OUTPUT=f03_ex_${example}-shared.txt" + #-D "TEST_REFERENCE=f03_ex_${example}-shared.out" -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" ) endif () - if (NOT "${last_test}" STREQUAL "") - set_tests_properties (f03_ex_${example} PROPERTIES DEPENDS ${last_test}) - endif () - set (last_test "f03_ex_${example}") - if (BUILD_SHARED_LIBS) - if (HDF5_ENABLE_USING_MEMCHECKER) - add_test (NAME f03_ex-shared_${example} COMMAND $<TARGET_FILE:f03_ex_${example}-shared>) - else () - add_test (NAME f03_ex-shared_${example} COMMAND "${CMAKE_COMMAND}" - -D "TEST_PROGRAM=$<TARGET_FILE:f03_ex_${example}-shared>" - -D "TEST_ARGS:STRING=" - -D "TEST_EXPECT=0" - -D "TEST_SKIP_COMPARE=TRUE" - -D "TEST_OUTPUT=f03_ex_${example}-shared.txt" - #-D "TEST_REFERENCE=f03_ex_${example}-shared.out" - -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" - -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" - ) - endif () - if (NOT "${last_test}" STREQUAL "") - set_tests_properties (f03_ex-shared_${example} PROPERTIES DEPENDS ${last_test}) - endif () - set (last_test "f03_ex-shared_${example}") + if (last_test) + set_tests_properties (f03_ex-shared_${example} PROPERTIES DEPENDS ${last_test}) endif () - endforeach () -endif () + set (last_test "f03_ex-shared_${example}") + endif () +endforeach () if (H5_HAVE_PARALLEL AND MPI_Fortran_FOUND) - add_test (NAME f90_ex_ph5example COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_PREFLAGS} $<TARGET_FILE:f90_ex_ph5example> ${MPIEXEC_POSTFLAGS}) + add_test (NAME MPI_TEST_f90_ex_ph5example COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_PREFLAGS} $<TARGET_FILE:f90_ex_ph5example> ${MPIEXEC_POSTFLAGS}) if (BUILD_SHARED_LIBS) - add_test (NAME f90_ex-shared_ph5example COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_PREFLAGS} $<TARGET_FILE:f90_ex_ph5example> ${MPIEXEC_POSTFLAGS}) + add_test (NAME MPI_TEST_f90_ex-shared_ph5example COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_PREFLAGS} $<TARGET_FILE:f90_ex_ph5example> ${MPIEXEC_POSTFLAGS}) endif () endif () diff --git a/fortran/examples/run-fortran-ex.sh.in b/fortran/examples/run-fortran-ex.sh.in index da0c357..aa17f89 100644 --- a/fortran/examples/run-fortran-ex.sh.in +++ b/fortran/examples/run-fortran-ex.sh.in @@ -61,8 +61,6 @@ RunTest() ./$TEST_EXEC } -F2003_ENABLED=@HAVE_FORTRAN_2003@ - ################## MAIN ################## # Run tests @@ -97,17 +95,8 @@ then RunTest mountexample &&\ rm mountexample &&\ RunTest compound &&\ - rm compound); then - EXIT_VALUE=${EXIT_SUCCESS} - else - EXIT_VALUE=${EXIT_FAILURE} - fi -fi - -if [ $EXIT_VALUE -eq ${EXIT_SUCCESS} -a "$F2003_ENABLED" = "yes" ] -then -# Add attention tests for Fortran 2003 features - if (RunTest rwdset_fortran2003 &&\ + rm compound &&\ + RunTest rwdset_fortran2003 &&\ rm rwdset_fortran2003 &&\ RunTest nested_derived_type &&\ rm nested_derived_type &&\ @@ -120,12 +109,11 @@ then EXIT_VALUE=${EXIT_FAILURE} fi fi - # Cleanup rm *.o rm *.h5 echo -exit $EXIT_VALUE +exit $EXIT_VALUE diff --git a/fortran/src/CMakeLists.txt b/fortran/src/CMakeLists.txt index 6cc15ea..83ee82c 100644 --- a/fortran/src/CMakeLists.txt +++ b/fortran/src/CMakeLists.txt @@ -9,11 +9,7 @@ if (WIN32) if (NOT H5_HAVE_PARALLEL) set (H5_NOPAREXP ";") endif () - if (NOT HDF5_ENABLE_F2003) - set (H5_NOF03EXP ";") - else () - set (H5_F03EXP ";") - endif () + set (H5_F03EXP ";") configure_file (${HDF5_F90_SRC_SOURCE_DIR}/hdf5_fortrandll.def.in ${HDF5_F90_SRC_BINARY_DIR}/hdf5_fortrandll.def @ONLY) endif () endif () diff --git a/fortran/src/H5Fff.F90 b/fortran/src/H5Fff.F90 index 9c8b941..cc51f37 100644 --- a/fortran/src/H5Fff.F90 +++ b/fortran/src/H5Fff.F90 @@ -946,4 +946,97 @@ CONTAINS END SUBROUTINE h5fget_file_image_f +!****s* H5F (F03)/h5fget_dset_no_attrs_hint_f_F03 +! +! NAME +! h5fget_dset_no_attrs_hint_f +! +! PURPOSE +! Gets the value of the "minimize dataset headers" value which creates +! smaller dataset object headers when its set and no attributes are present. +! +! INPUTS +! file_id - Target file identifier. +! +! OUTPUTS +! minimize - Value of the setting. +! hdferr - error code: +! 0 on success and -1 on failure +! +! AUTHOR +! Dana Robinson +! January 2019 +! +! Fortran2003 Interface: + SUBROUTINE h5fget_dset_no_attrs_hint_f(file_id, minimize, hdferr) + IMPLICIT NONE + INTEGER(HID_T) , INTENT(IN) :: file_id + LOGICAL , INTENT(OUT) :: minimize + INTEGER , INTENT(OUT) :: hdferr +!***** + LOGICAL(C_BOOL) :: c_minimize + + INTERFACE + INTEGER FUNCTION h5fget_dset_no_attrs_hint_c(file_id, minimize) BIND(C, NAME='H5Fget_dset_no_attrs_hint') + IMPORT :: HID_T, C_BOOL + IMPLICIT NONE + INTEGER(HID_T), INTENT(IN), VALUE :: file_id + LOGICAL(C_BOOL), INTENT(OUT) :: minimize + END FUNCTION h5fget_dset_no_attrs_hint_c + END INTERFACE + + hdferr = INT(h5fget_dset_no_attrs_hint_c(file_id, c_minimize)) + + ! Transfer value of C C_BOOL type to Fortran LOGICAL + minimize = c_minimize + + END SUBROUTINE h5fget_dset_no_attrs_hint_f + +!****s* H5F (F03)/h5fset_dset_no_attrs_hint_f_F03 +! +! NAME +! h5fset_dset_no_attrs_hint_f +! +! PURPOSE +! Sets the value of the "minimize dataset headers" value which creates +! smaller dataset object headers when its set and no attributes are present. +! +! INPUTS +! file_id - Target file identifier. +! minimize - Value of the setting. +! +! OUTPUTS +! hdferr - error code: +! 0 on success and -1 on failure +! +! AUTHOR +! Dana Robinson +! January 2019 +! +! Fortran2003 Interface: + SUBROUTINE h5fset_dset_no_attrs_hint_f(file_id, minimize, hdferr) + IMPLICIT NONE + INTEGER(HID_T) , INTENT(IN) :: file_id + LOGICAL , INTENT(IN) :: minimize + INTEGER , INTENT(OUT) :: hdferr +!***** + LOGICAL(C_BOOL) :: c_minimize + + INTERFACE + INTEGER FUNCTION h5fset_dset_no_attrs_hint_c(file_id, minimize) BIND(C, NAME='H5Fset_dset_no_attrs_hint') + IMPORT :: HID_T, C_BOOL + IMPLICIT NONE + INTEGER(HID_T), INTENT(IN), VALUE :: file_id + LOGICAL(C_BOOL), INTENT(IN), VALUE :: minimize + END FUNCTION h5fset_dset_no_attrs_hint_c + END INTERFACE + + ! Transfer value of Fortran LOGICAL to C C_BOOL type + c_minimize = minimize + + hdferr = INT(h5fset_dset_no_attrs_hint_c(file_id, c_minimize)) + + END SUBROUTINE h5fset_dset_no_attrs_hint_f + END MODULE H5F + diff --git a/fortran/src/H5Of.c b/fortran/src/H5Of.c index 45b7f09..08305ea 100644 --- a/fortran/src/H5Of.c +++ b/fortran/src/H5Of.c @@ -27,11 +27,15 @@ fill_h5o_info_t_f(H5O_info_t Oinfo, H5O_info_t_f *object_info); int_f fill_h5o_info_t_f(H5O_info_t Oinfo, H5O_info_t_f *object_info) { + /* This function does not used the field parameter because we want + * this function to fill the unfilled fields with C's default values. + */ + struct tm *ts; object_info->fileno = Oinfo.fileno; object_info->addr = (haddr_t_f)Oinfo.addr; - + object_info->type = (int_f)Oinfo.type; object_info->rc = (int_f)Oinfo.rc; @@ -96,6 +100,8 @@ fill_h5o_info_t_f(H5O_info_t Oinfo, H5O_info_t_f *object_info) { object_info->meta_size.obj.index_size = (hsize_t_f)Oinfo.meta_size.obj.index_size; object_info->meta_size.obj.heap_size = (hsize_t_f)Oinfo.meta_size.obj.heap_size; + object_info->meta_size.attr.index_size = (hsize_t_f)Oinfo.meta_size.attr.index_size; + object_info->meta_size.attr.heap_size = (hsize_t_f)Oinfo.meta_size.attr.heap_size; return 0; @@ -138,7 +144,7 @@ h5olink_c (hid_t_f *object_id, hid_t_f *new_loc_id, _fcd name, size_t_f *namelen * Call H5Olink function. */ if((hid_t_f)H5Olink((hid_t)*object_id, (hid_t)*new_loc_id, c_name, - (hid_t)*lcpl_id, (hid_t)*lapl_id) < 0) + (hid_t)*lcpl_id, (hid_t)*lapl_id) < 0) HGOTO_DONE(FAIL); done: @@ -229,6 +235,7 @@ h5oclose_c ( hid_t_f *object_id ) * idx - Iteration position at which to start * op - Callback function passing data regarding the link to the calling application * op_data - User-defined pointer to data required by the application for its processing of the link + * fields - Flags specifying the fields to include in object_info. * * OUTPUTS * idx - Position at which an interrupted iteration may be restarted @@ -241,7 +248,7 @@ h5oclose_c ( hid_t_f *object_id ) * SOURCE */ int_f -h5ovisit_c(hid_t_f *group_id, int_f *index_type, int_f *order, H5O_iterate_t op, void *op_data ) +h5ovisit_c(hid_t_f *group_id, int_f *index_type, int_f *order, H5O_iterate_t op, void *op_data, int_f *fields ) /******/ { int_f ret_value = -1; /* Return value */ @@ -250,7 +257,8 @@ h5ovisit_c(hid_t_f *group_id, int_f *index_type, int_f *order, H5O_iterate_t op, /* * Call H5Ovisit2 */ - func_ret_value = H5Ovisit2( (hid_t)*group_id, (H5_index_t)*index_type, (H5_iter_order_t)*order, op, op_data, H5O_INFO_ALL); + + func_ret_value = H5Ovisit2( (hid_t)*group_id, (H5_index_t)*index_type, (H5_iter_order_t)*order, op, op_data, (unsigned)*fields); ret_value = (int_f)func_ret_value; @@ -302,6 +310,7 @@ h5oopen_by_addr_c (hid_t_f *loc_id, haddr_t_f *addr, hid_t_f *obj_id) * name - Name of group, relative to loc_id. * namelen - Name length. * lapl_id - Link access property list. + * fields - Flags specifying the fields to include in object_info. * OUTPUTS * object_info - Buffer in which to return object information. * @@ -314,7 +323,7 @@ h5oopen_by_addr_c (hid_t_f *loc_id, haddr_t_f *addr, hid_t_f *obj_id) */ int_f h5oget_info_by_name_c (hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *lapl_id, - H5O_info_t_f *object_info) + H5O_info_t_f *object_info, int_f *fields) /******/ { char *c_name = NULL; /* Buffer to hold C string */ @@ -331,10 +340,10 @@ h5oget_info_by_name_c (hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *l * Call H5Oinfo_by_name function. */ if(H5Oget_info_by_name2((hid_t)*loc_id, c_name, - &Oinfo, H5O_INFO_ALL, (hid_t)*lapl_id) < 0) + &Oinfo, (unsigned)*fields, (hid_t)*lapl_id) < 0) HGOTO_DONE(FAIL); - ret_value = fill_h5o_info_t_f(Oinfo,object_info); + ret_value = fill_h5o_info_t_f(Oinfo, object_info); done: if(c_name) @@ -354,6 +363,7 @@ h5oget_info_by_name_c (hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *l * lapl_id - Link access property list. * OUTPUTS * object_info - Buffer in which to return object information. + * fields - Flags specifying the fields to include in object_info. * * RETURNS * 0 on success, -1 on failure @@ -364,7 +374,7 @@ h5oget_info_by_name_c (hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *l */ int_f h5oget_info_by_idx_c (hid_t_f *loc_id, _fcd group_name, size_t_f *namelen, - int_f *index_field, int_f *order, hsize_t_f *n, hid_t_f *lapl_id, H5O_info_t_f *object_info) + int_f *index_field, int_f *order, hsize_t_f *n, hid_t_f *lapl_id, H5O_info_t_f *object_info, int_f *fields) /******/ { char *c_group_name = NULL; /* Buffer to hold C string */ @@ -386,7 +396,7 @@ h5oget_info_by_idx_c (hid_t_f *loc_id, _fcd group_name, size_t_f *namelen, * Call H5Oinfo_by_idx function. */ if(H5Oget_info_by_idx2((hid_t)*loc_id, c_group_name, c_index_field, c_order, (hsize_t)*n, - &Oinfo, H5O_INFO_ALL, (hid_t)*lapl_id) < 0) + &Oinfo, (unsigned)*fields, (hid_t)*lapl_id) < 0) HGOTO_DONE(FAIL); ret_value = fill_h5o_info_t_f(Oinfo,object_info); @@ -404,6 +414,7 @@ h5oget_info_by_idx_c (hid_t_f *loc_id, _fcd group_name, size_t_f *namelen, * Calls H5Oget_info * INPUTS * object_id - Identifier for target object. + * fields - Flags specifying the fields to include in object_info. * OUTPUTS * object_info - Buffer in which to return object information. * @@ -415,7 +426,7 @@ h5oget_info_by_idx_c (hid_t_f *loc_id, _fcd group_name, size_t_f *namelen, * SOURCE */ int_f -h5oget_info_c (hid_t_f *object_id, H5O_info_t_f *object_info) +h5oget_info_c (hid_t_f *object_id, H5O_info_t_f *object_info, int_f *fields) /******/ { int_f ret_value = 0; /* Return value */ @@ -424,7 +435,7 @@ h5oget_info_c (hid_t_f *object_id, H5O_info_t_f *object_info) /* * Call H5Oinfo_by_name function. */ - if(H5Oget_info2((hid_t)*object_id, &Oinfo, H5O_INFO_ALL) < 0) + if(H5Oget_info2((hid_t)*object_id, &Oinfo, (unsigned)*fields) < 0) HGOTO_DONE(FAIL); ret_value = fill_h5o_info_t_f(Oinfo,object_info); @@ -457,8 +468,8 @@ h5oget_info_c (hid_t_f *object_id, H5O_info_t_f *object_info) */ int_f h5ocopy_c (hid_t_f *src_loc_id, _fcd src_name, size_t_f *src_name_len, - hid_t_f *dst_loc_id, _fcd dst_name, size_t_f *dst_name_len, - hid_t_f *ocpypl_id, hid_t_f *lcpl_id ) + hid_t_f *dst_loc_id, _fcd dst_name, size_t_f *dst_name_len, + hid_t_f *ocpypl_id, hid_t_f *lcpl_id ) /******/ { char *c_src_name = NULL; /* Buffer to hold C string */ @@ -478,7 +489,7 @@ h5ocopy_c (hid_t_f *src_loc_id, _fcd src_name, size_t_f *src_name_len, * Call H5Ocopy function. */ if(H5Ocopy( (hid_t)*src_loc_id, c_src_name, (hid_t)*dst_loc_id, c_dst_name, - (hid_t)*ocpypl_id, (hid_t)*lcpl_id) < 0) + (hid_t)*ocpypl_id, (hid_t)*lcpl_id) < 0) HGOTO_DONE(FAIL); done: @@ -503,6 +514,7 @@ h5ocopy_c (hid_t_f *src_loc_id, _fcd src_name, size_t_f *src_name_len, * idx - Iteration position at which to start * op - Callback function passing data regarding the link to the calling application * op_data - User-defined pointer to data required by the application for its processing of the link + * fields - Flags specifying the fields to include in object_info. * * OUTPUTS * idx - Position at which an interrupted iteration may be restarted @@ -516,7 +528,7 @@ h5ocopy_c (hid_t_f *src_loc_id, _fcd src_name, size_t_f *src_name_len, */ int_f h5ovisit_by_name_c(hid_t_f *loc_id, _fcd object_name, size_t_f *namelen, int_f *index_type, int_f *order, - H5O_iterate_t op, void *op_data, hid_t_f *lapl_id ) + H5O_iterate_t op, void *op_data, hid_t_f *lapl_id, int_f *fields ) /******/ { int_f ret_value = -1; /* Return value */ @@ -533,7 +545,7 @@ h5ovisit_by_name_c(hid_t_f *loc_id, _fcd object_name, size_t_f *namelen, int_f * Call H5Ovisit */ func_ret_value = H5Ovisit_by_name2( (hid_t)*loc_id, c_object_name, (H5_index_t)*index_type, (H5_iter_order_t)*order, - op, op_data, H5O_INFO_ALL, (hid_t)*lapl_id); + op, op_data, (unsigned)*fields, (hid_t)*lapl_id); ret_value = (int_f)func_ret_value; done: @@ -763,7 +775,7 @@ h5oset_comment_by_name_c (hid_t_f *object_id, _fcd name, size_t_f *namelen, _fc */ int_f h5oopen_by_idx_c (hid_t_f *loc_id, _fcd group_name, size_t_f *group_namelen, - int_f *index_type, int_f *order, hsize_t_f *n, hid_t_f *obj_id, hid_t_f *lapl_id) + int_f *index_type, int_f *order, hsize_t_f *n, hid_t_f *obj_id, hid_t_f *lapl_id) /******/ { char *c_group_name = NULL; /* Buffer to hold C string */ @@ -868,7 +880,7 @@ h5oget_comment_c (hid_t_f *object_id, _fcd comment, size_t_f *commentsize, hssi */ int_f h5oget_comment_by_name_c (hid_t_f *loc_id, _fcd name, size_t_f *name_size, - _fcd comment, size_t_f *commentsize, size_t_f *bufsize, hid_t_f *lapl_id) + _fcd comment, size_t_f *commentsize, size_t_f *bufsize, hid_t_f *lapl_id) /******/ { char *c_comment = NULL; /* Buffer to hold C string */ diff --git a/fortran/src/H5Off.F90 b/fortran/src/H5Off.F90 index 243ec29..8c77230 100644 --- a/fortran/src/H5Off.F90 +++ b/fortran/src/H5Off.F90 @@ -69,6 +69,15 @@ MODULE H5O TYPE(mesg_t) :: mesg END TYPE hdr_t + TYPE, BIND(C) :: c_hdr_t + INTEGER(C_INT) :: version ! Version number of header format in file + INTEGER(C_INT) :: nmesgs ! Number of object header messages + INTEGER(C_INT) :: nchunks ! Number of object header chunks + INTEGER(C_INT) :: flags ! Object header status flags + TYPE(space_t) :: space + TYPE(mesg_t) :: mesg + END TYPE c_hdr_t + ! Extra metadata storage for obj & attributes TYPE, BIND(C) :: H5_ih_info_t INTEGER(hsize_t) :: index_size ! btree and/or list @@ -83,7 +92,7 @@ MODULE H5O TYPE, BIND(C) :: h5o_info_t INTEGER(C_LONG) :: fileno ! File number that object is located in INTEGER(haddr_t) :: addr ! Object address in file - INTEGER(C_INT) :: type ! Basic object type (group, dataset, etc.) + INTEGER(C_INT) :: type ! Basic object type (group, dataset, etc.) INTEGER :: rc ! Reference count of object INTEGER, DIMENSION(8) :: atime ! Access time ! -- NOTE -- @@ -98,6 +107,28 @@ MODULE H5O TYPE(meta_size_t) :: meta_size END TYPE h5o_info_t +! C interoperable structure for h5o_info_t. The Fortran derived type returns the time +! values as an integer array as specified in the Fortran intrinsic DATE_AND_TIME(VALUES). +! Whereas, this derived type does not. + + TYPE, BIND(C) :: c_h5o_info_t + INTEGER(C_LONG) :: fileno ! File number that object is located in + INTEGER(haddr_t) :: addr ! Object address in file + INTEGER(C_INT) :: type ! Basic object type (group, dataset, etc.) + INTEGER(C_INT) :: rc ! Reference count of object + + INTEGER(KIND=TIME_T) :: atime ! Access time + INTEGER(KIND=TIME_T) :: mtime ! modify time + INTEGER(KIND=TIME_T) :: ctime ! create time + INTEGER(KIND=TIME_T) :: btime ! Access time + + INTEGER(hsize_t) :: num_attrs ! # of attributes attached to object + + TYPE(c_hdr_t) :: hdr + + TYPE(meta_size_t) :: meta_size + END TYPE c_h5o_info_t + !***** CONTAINS @@ -834,12 +865,16 @@ CONTAINS ! return_value - returns the return value of the first operator that returns a positive value, or ! zero if all members were processed with no operator returning non-zero. ! hdferr - Returns 0 if successful and -1 if fails +! +! Optional parameters: +! fields - Flags specifying the fields to include in object_info. +! ! AUTHOR ! M. Scot Breitenfeld ! November 19, 2008 ! ! Fortran2003 Interface: - SUBROUTINE h5ovisit_f(object_id, index_type, order, op, op_data, return_value, hdferr) + SUBROUTINE h5ovisit_f(object_id, index_type, order, op, op_data, return_value, hdferr, fields) IMPLICIT NONE INTEGER(HID_T), INTENT(IN) :: object_id INTEGER, INTENT(IN) :: index_type @@ -849,10 +884,12 @@ CONTAINS TYPE(C_PTR) :: op_data INTEGER, INTENT(OUT) :: return_value INTEGER, INTENT(OUT) :: hdferr + INTEGER, INTENT(IN), OPTIONAL :: fields !***** + INTEGER :: fields_c INTERFACE - INTEGER FUNCTION h5ovisit_c(object_id, index_type, order, op, op_data) & + INTEGER FUNCTION h5ovisit_c(object_id, index_type, order, op, op_data, fields) & BIND(C, NAME='h5ovisit_c') IMPORT :: C_FUNPTR, C_PTR IMPORT :: HID_T @@ -862,10 +899,14 @@ CONTAINS INTEGER, INTENT(IN) :: order TYPE(C_FUNPTR), VALUE :: op TYPE(C_PTR), VALUE :: op_data + INTEGER, INTENT(IN) :: fields END FUNCTION h5ovisit_c END INTERFACE - return_value = h5ovisit_c(object_id, index_type, order, op, op_data) + fields_c = H5O_INFO_ALL_F + IF(PRESENT(fields)) fields_c = fields + + return_value = h5ovisit_c(object_id, index_type, order, op, op_data, fields_c) IF(return_value.GE.0)THEN hdferr = 0 @@ -894,26 +935,29 @@ CONTAINS ! ! Optional parameters: ! lapl_id - Link access property list. +! fields - Flags specifying the fields to include in object_info. ! ! AUTHOR ! M. Scot Breitenfeld ! December 1, 2008 ! ! Fortran2003 Interface: - SUBROUTINE h5oget_info_by_name_f(loc_id, name, object_info, hdferr, lapl_id) + SUBROUTINE h5oget_info_by_name_f(loc_id, name, object_info, hdferr, lapl_id, fields) IMPLICIT NONE INTEGER(HID_T) , INTENT(IN) :: loc_id CHARACTER(LEN=*), INTENT(IN) :: name TYPE(h5o_info_t), INTENT(OUT), TARGET :: object_info INTEGER , INTENT(OUT) :: hdferr INTEGER(HID_T) , INTENT(IN) , OPTIONAL :: lapl_id + INTEGER , INTENT(IN) , OPTIONAL :: fields !***** INTEGER(SIZE_T) :: namelen INTEGER(HID_T) :: lapl_id_default TYPE(C_PTR) :: ptr + INTEGER :: fields_c INTERFACE - INTEGER FUNCTION h5oget_info_by_name_c(loc_id, name, namelen, lapl_id_default, object_info) & + INTEGER FUNCTION h5oget_info_by_name_c(loc_id, name, namelen, lapl_id_default, object_info, fields) & BIND(C, NAME='h5oget_info_by_name_c') IMPORT :: c_char, c_ptr IMPORT :: HID_T, SIZE_T @@ -923,10 +967,13 @@ CONTAINS INTEGER(SIZE_T) , INTENT(IN) :: namelen INTEGER(HID_T) , INTENT(IN) :: lapl_id_default TYPE(C_PTR),VALUE :: object_info - + INTEGER , INTENT(IN) :: fields END FUNCTION h5oget_info_by_name_c END INTERFACE + fields_c = H5O_INFO_ALL_F + IF(PRESENT(fields)) fields_c = fields + namelen = LEN(name) lapl_id_default = H5P_DEFAULT_F @@ -934,7 +981,7 @@ CONTAINS ptr = C_LOC(object_info) - hdferr = H5Oget_info_by_name_c(loc_id, name, namelen, lapl_id_default, ptr) + hdferr = H5Oget_info_by_name_c(loc_id, name, namelen, lapl_id_default, ptr, fields_c) END SUBROUTINE H5Oget_info_by_name_f @@ -953,34 +1000,43 @@ CONTAINS ! object_info - Buffer in which to return object information. ! hdferr - Returns 0 if successful and -1 if fails. ! +! Optional parameters: +! fields - Flags specifying the fields to include in object_info. +! ! AUTHOR ! M. Scot Breitenfeld ! May 11, 2012 ! ! Fortran2003 Interface: - SUBROUTINE h5oget_info_f(object_id, object_info, hdferr) + SUBROUTINE h5oget_info_f(object_id, object_info, hdferr, fields) USE, INTRINSIC :: ISO_C_BINDING IMPLICIT NONE INTEGER(HID_T) , INTENT(IN) :: object_id TYPE(h5o_info_t), INTENT(OUT), TARGET :: object_info INTEGER , INTENT(OUT) :: hdferr + INTEGER , INTENT(IN), OPTIONAL :: fields !***** TYPE(C_PTR) :: ptr - + INTEGER :: fields_c + INTERFACE - INTEGER FUNCTION h5oget_info_c(object_id, object_info) & + INTEGER FUNCTION h5oget_info_c(object_id, object_info, fields) & BIND(C, NAME='h5oget_info_c') IMPORT :: C_PTR IMPORT :: HID_T IMPLICIT NONE INTEGER(HID_T), INTENT(IN) :: object_id TYPE(C_PTR), VALUE :: object_info + INTEGER, INTENT(IN) :: fields END FUNCTION h5oget_info_c END INTERFACE + fields_c = H5O_INFO_ALL_F + IF(PRESENT(fields)) fields_c = fields + ptr = C_LOC(object_info) - hdferr = H5Oget_info_c(object_id, ptr) + hdferr = H5Oget_info_c(object_id, ptr, fields_c) END SUBROUTINE H5Oget_info_f @@ -1006,6 +1062,7 @@ CONTAINS ! ! Optional parameters: ! lapl_id - Link access property list. (Not currently used.) +! fields - Flags specifying the fields to include in object_info. ! ! AUTHOR ! M. Scot Breitenfeld @@ -1013,7 +1070,7 @@ CONTAINS ! ! Fortran2003 Interface: SUBROUTINE h5oget_info_by_idx_f(loc_id, group_name, index_field, order, n, & - object_info, hdferr, lapl_id) + object_info, hdferr, lapl_id, fields) USE, INTRINSIC :: ISO_C_BINDING IMPLICIT NONE @@ -1025,14 +1082,16 @@ CONTAINS TYPE(h5o_info_t), INTENT(OUT), TARGET :: object_info INTEGER , INTENT(OUT) :: hdferr INTEGER(HID_T) , INTENT(IN) , OPTIONAL :: lapl_id + INTEGER , INTENT(IN) , OPTIONAL :: fields !***** INTEGER(SIZE_T) :: namelen INTEGER(HID_T) :: lapl_id_default TYPE(C_PTR) :: ptr + INTEGER :: fields_c INTERFACE INTEGER FUNCTION h5oget_info_by_idx_c(loc_id, group_name, namelen, & - index_field, order, n, lapl_id_default, object_info) BIND(C, NAME='h5oget_info_by_idx_c') + index_field, order, n, lapl_id_default, object_info, fields) BIND(C, NAME='h5oget_info_by_idx_c') IMPORT :: c_char, c_ptr, c_funptr IMPORT :: HID_T, SIZE_T, HSIZE_T INTEGER(HID_T) , INTENT(IN) :: loc_id @@ -1043,17 +1102,20 @@ CONTAINS INTEGER(HSIZE_T), INTENT(IN) :: n INTEGER(HID_T) , INTENT(IN) :: lapl_id_default TYPE(C_PTR), VALUE :: object_info - + INTEGER, INTENT(IN) :: fields END FUNCTION h5oget_info_by_idx_c END INTERFACE + fields_c = H5O_INFO_ALL_F + IF(PRESENT(fields)) fields_c = fields + namelen = LEN(group_name) lapl_id_default = H5P_DEFAULT_F IF(PRESENT(lapl_id)) lapl_id_default = lapl_id ptr = C_LOC(object_info) - hdferr = H5Oget_info_by_idx_c(loc_id, group_name, namelen, index_field, order, n, lapl_id_default, ptr) + hdferr = H5Oget_info_by_idx_c(loc_id, group_name, namelen, index_field, order, n, lapl_id_default, ptr, fields_c) END SUBROUTINE H5Oget_info_by_idx_f @@ -1086,6 +1148,7 @@ CONTAINS ! ! Optional parameters: ! lapl_id - Link access property list identifier. +! fields - Flags specifying the fields to include in object_info. ! ! AUTHOR ! M. Scot Breitenfeld @@ -1093,7 +1156,7 @@ CONTAINS ! ! Fortran2003 Interface: SUBROUTINE h5ovisit_by_name_f(loc_id, object_name, index_type, order, op, op_data, & - return_value, hdferr, lapl_id) + return_value, hdferr, lapl_id, fields) IMPLICIT NONE INTEGER(HID_T) , INTENT(IN) :: loc_id CHARACTER(LEN=*), INTENT(IN) :: object_name @@ -1105,14 +1168,16 @@ CONTAINS INTEGER , INTENT(OUT) :: return_value INTEGER , INTENT(OUT) :: hdferr INTEGER(HID_T) , INTENT(IN) , OPTIONAL :: lapl_id + INTEGER , INTENT(IN) , OPTIONAL :: fields !***** INTEGER(SIZE_T) :: namelen INTEGER(HID_T) :: lapl_id_default + INTEGER :: fields_c INTERFACE INTEGER FUNCTION h5ovisit_by_name_c(loc_id, object_name, namelen, index_type, order, & - op, op_data, lapl_id) BIND(C, NAME='h5ovisit_by_name_c') + op, op_data, lapl_id, fields) BIND(C, NAME='h5ovisit_by_name_c') IMPORT :: C_CHAR, C_PTR, C_FUNPTR IMPORT :: HID_T, SIZE_T IMPLICIT NONE @@ -1124,16 +1189,20 @@ CONTAINS TYPE(C_FUNPTR) , VALUE :: op TYPE(C_PTR) , VALUE :: op_data INTEGER(HID_T) , INTENT(IN) :: lapl_id + INTEGER , INTENT(IN) :: fields END FUNCTION h5ovisit_by_name_c END INTERFACE + fields_c = H5O_INFO_ALL_F + IF(PRESENT(fields)) fields_c = fields + namelen = LEN(object_name) lapl_id_default = H5P_DEFAULT_F IF(PRESENT(lapl_id)) lapl_id_default = lapl_id return_value = h5ovisit_by_name_c(loc_id, object_name, namelen, index_type, order, & - op, op_data, lapl_id_default) + op, op_data, lapl_id_default, fields_c) IF(return_value.GE.0)THEN hdferr = 0 diff --git a/fortran/src/H5Pff.F90 b/fortran/src/H5Pff.F90 index d6e70b3..31dfbdc 100644 --- a/fortran/src/H5Pff.F90 +++ b/fortran/src/H5Pff.F90 @@ -8022,8 +8022,97 @@ SUBROUTINE h5pget_virtual_dsetname_f(dcpl_id, index, name, hdferr, name_len) END SUBROUTINE h5pget_virtual_dsetname_f +!****s* H5P (F03)/h5pget_dset_no_attrs_hint_f_F03 +! +! NAME +! h5pget_dset_no_attrs_hint_f +! +! PURPOSE +! Gets the value of the "minimize dataset headers" value which creates +! smaller dataset object headers when its set and no attributes are present. +! +! INPUTS +! dcpl_id - Target dataset creation property list identifier. +! +! OUTPUTS +! minimize - Value of the setting. +! hdferr - error code: +! 0 on success and -1 on failure +! +! AUTHOR +! Dana Robinson +! January 2019 +! +! Fortran2003 Interface: + SUBROUTINE h5pget_dset_no_attrs_hint_f(dcpl_id, minimize, hdferr) + IMPLICIT NONE + INTEGER(HID_T) , INTENT(IN) :: dcpl_id + LOGICAL , INTENT(OUT) :: minimize + INTEGER , INTENT(OUT) :: hdferr +!***** + LOGICAL(C_BOOL) :: c_minimize -END MODULE H5P + INTERFACE + INTEGER FUNCTION h5pget_dset_no_attrs_hint_c(dcpl_id, minimize) BIND(C, NAME='H5Pget_dset_no_attrs_hint') + IMPORT :: HID_T, C_BOOL + IMPLICIT NONE + INTEGER(HID_T), INTENT(IN), VALUE :: dcpl_id + LOGICAL(C_BOOL), INTENT(OUT) :: minimize + END FUNCTION h5pget_dset_no_attrs_hint_c + END INTERFACE + + hdferr = INT(h5pget_dset_no_attrs_hint_c(dcpl_id, c_minimize)) + ! Transfer value of C C_BOOL type to Fortran LOGICAL + minimize = c_minimize + END SUBROUTINE h5pget_dset_no_attrs_hint_f + +!****s* H5P (F03)/h5pset_dset_no_attrs_hint_f_F03 +! +! NAME +! h5pset_dset_no_attrs_hint_f +! +! PURPOSE +! Sets the value of the "minimize dataset headers" value which creates +! smaller dataset object headers when its set and no attributes are present. +! +! INPUTS +! dcpl_id - Target dataset creation property list identifier. +! minimize - Value of the setting. +! +! OUTPUTS +! hdferr - error code: +! 0 on success and -1 on failure +! +! AUTHOR +! Dana Robinson +! January 2019 +! +! Fortran2003 Interface: + SUBROUTINE h5pset_dset_no_attrs_hint_f(dcpl_id, minimize, hdferr) + IMPLICIT NONE + INTEGER(HID_T) , INTENT(IN) :: dcpl_id + LOGICAL , INTENT(IN) :: minimize + INTEGER , INTENT(OUT) :: hdferr +!***** + LOGICAL(C_BOOL) :: c_minimize + + INTERFACE + INTEGER FUNCTION h5pset_dset_no_attrs_hint_c(dcpl_id, minimize) BIND(C, NAME='H5Pset_dset_no_attrs_hint') + IMPORT :: HID_T, C_BOOL + IMPLICIT NONE + INTEGER(HID_T), INTENT(IN), VALUE :: dcpl_id + LOGICAL(C_BOOL), INTENT(IN), VALUE :: minimize + END FUNCTION h5pset_dset_no_attrs_hint_c + END INTERFACE + + ! Transfer value of Fortran LOGICAL to C C_BOOL type + c_minimize = minimize + + hdferr = INT(h5pset_dset_no_attrs_hint_c(dcpl_id, c_minimize)) + + END SUBROUTINE h5pset_dset_no_attrs_hint_f + +END MODULE H5P diff --git a/fortran/src/H5Sf.c b/fortran/src/H5Sf.c index 2eae0d9..96540f7 100644 --- a/fortran/src/H5Sf.c +++ b/fortran/src/H5Sf.c @@ -995,167 +995,6 @@ done: } -#ifdef NEW_HYPERSLAB_API -/****if* H5Sf/h5scombine_hyperslab_c - * NAME - * h5scombine_hyperslab_c - * PURPOSE - * Call H5Scombine_hyperslab - * INPUTS - * space_id - identifier of the dataspace - * operator - defines how the new selection is combined - * start - offset of start of hyperslab - * count - number of blocks included in the hyperslab - * stride - hyperslab stride (interval between blocks) - * block - size of block in the hyperslab - * OUTPUTS - * hyper_id - identifier for the new dataspace - * RETURNS - * 0 on success, -1 on failure - * AUTHOR - * Elena Pourmal - * Monday, October 7, 2002 - * HISTORY - * - * SOURCE -*/ - -int_f -h5scombine_hyperslab_c ( hid_t_f *space_id , int_f *op, hsize_t_f *start, hsize_t_f *count, hsize_t_f *stride, hsize_t_f *block, hid_t_f *hyper_id) -/******/ -{ - int ret_value = -1; - hid_t c_space_id; - hid_t c_hyper_id; - hsize_t *c_start = NULL; - hsize_t *c_count = NULL; - hsize_t *c_stride = NULL; - hsize_t *c_block = NULL; - - H5S_seloper_t c_op; - herr_t status; - int rank; - int i; - - rank = H5Sget_simple_extent_ndims(*space_id); - if (rank < 0 ) return ret_value; - c_start = (hsize_t *)HDmalloc(sizeof(hsize_t)*rank); - if (c_start == NULL) goto DONE; - - c_count = (hsize_t *)HDmalloc(sizeof(hsize_t)*rank); - if (c_count == NULL) goto DONE; - - c_stride = (hsize_t *)HDmalloc(sizeof(hsize_t)*rank); - if (c_stride == NULL) goto DONE; - - c_block = (hsize_t *)HDmalloc(sizeof(hsize_t)*rank); - if (c_block == NULL) goto DONE; - - - /* - * Reverse dimensions due to C-FORTRAN storage order. - */ - - for (i=0; i < rank; i++) { - int t= (rank - i) - 1; - c_start[i] = (hsize_t)start[t]; - c_count[i] = (hsize_t)count[t]; - c_stride[i] = (hsize_t)stride[t]; - c_block[i] = (hsize_t)block[t]; - } - - c_op = (H5S_seloper_t)*op; - - c_space_id = (hid_t)*space_id; - c_hyper_id = H5Scombine_hyperslab(c_space_id, c_op, c_start, c_stride, c_count, c_block); - if ( c_hyper_id < 0 ) goto DONE; - *hyper_id = (hid_t_f)c_hyper_id; - ret_value = 0; -DONE: - if(c_start != NULL) HDfree(c_start); - if(c_count != NULL) HDfree(c_count); - if(c_stride!= NULL) HDfree(c_stride); - if(c_block != NULL) HDfree(c_block); - return ret_value; -} -/****if* H5Sf/h5scombine_select_c - * NAME - * h5scombine_select_c - * PURPOSE - * Call H5Scombine_ select - * INPUTS - * space1_id - identifier of the first dataspace - * operator - defines how the new selection is combined - * space2_id - identifier of the second dataspace - * OUTPUTS - * ds_id - identifier for the new dataspace - * RETURNS - * 0 on success, -1 on failure - * AUTHOR - * Elena Pourmal - * Monday, October 7, 2002 - * HISTORY - * - * SOURCE -*/ - -int_f -h5scombine_select_c ( hid_t_f *space1_id , int_f *op, hid_t_f *space2_id, hid_t_f *ds_id) -/******/ -{ - int ret_value = -1; - hid_t c_space1_id; - hid_t c_space2_id; - hid_t c_ds_id; - H5S_seloper_t c_op; - - c_op = (H5S_seloper_t)*op; - - c_space1_id = (hid_t)*space1_id; - c_space2_id = (hid_t)*space2_id; - c_ds_id = H5Scombine_select(c_space1_id, c_op, c_space2_id); - if ( c_ds_id < 0 ) return ret_value; - *ds_id = (hid_t_f)c_ds_id; - ret_value = 0; - return ret_value; -} -/****if* H5Sf/h5sselect_select_c - * NAME - * h5sselect_select_c - * PURPOSE - * Call H5Sselect_ select - * INPUTS - * space1_id - identifier of the first dataspace to modify - * operator - defines how the new selection is combined - * space2_id - identifier of the second dataspace - * RETURNS - * 0 on success, -1 on failure - * AUTHOR - * Elena Pourmal - * Monday, October 7, 2002 - * HISTORY - * - * SOURCE -*/ - -int_f -h5sselect_select_c ( hid_t_f *space1_id , int_f *op, hid_t_f *space2_id) -/******/ -{ - int ret_value = -1; - hid_t c_space1_id; - hid_t c_space2_id; - H5S_seloper_t c_op; - - c_op = (H5S_seloper_t)*op; - - c_space1_id = (hid_t)*space1_id; - c_space2_id = (hid_t)*space2_id; - if( H5Sselect_select(c_space1_id, c_op, c_space2_id)< 0) return ret_value; - ret_value = 0; - return ret_value; -} -#endif /*NEW_HYPERSLAB_API*/ /****if* H5Sf/h5sget_select_type_c * NAME * h5sget_select_type_c diff --git a/fortran/src/H5Sff.F90 b/fortran/src/H5Sff.F90 index 3434fba..3af7755 100644 --- a/fortran/src/H5Sff.F90 +++ b/fortran/src/H5Sff.F90 @@ -1275,310 +1275,6 @@ CONTAINS DEALLOCATE(def_stride) END SUBROUTINE h5sselect_hyperslab_f -! !$! -! !$!****s* H5S/h5scombine_hyperslab_f -! !$! -! !$! NAME -! !$! h5scombine_hyperslab_f -! !$! -! !$! PURPOSE -! !$! Combine a hyperslab selection with the current -! !$! selection for a dataspace -! !$! -! !$! INPUTS -! !$! space_id - dataspace of selection to use -! !$! operator - flag, valid values are: -! !$! H5S_SELECT_NOOP_F -! !$! H5S_SELECT_SET_F -! !$! H5S_SELECT_OR_F -! !$! H5S_SELECT_AND_F -! !$! H5S_SELECT_XOR_F -! !$! H5S_SELECT_NOTB_F -! !$! H5S_SELECT_NOTA_F -! !$! H5S_SELECT_APPEND_F -! !$! H5S_SELECT_PREPEND_F -! !$! start - array with hyperslab offsets -! !$! count - number of blocks included in the -! !$! hyperslab -! !$! OUTPUTS -! !$! hyper_id - identifier for the new hyperslab -! !$! hdferr: - error code -! !$! Success: 0 -! !$! Failure: -1 -! !$! OPTIONAL PARAMETERS -! !$! stride - array with hyperslab strides -! !$! block - array with hyperslab block sizes -! !$! -! !$! AUTHOR -! !$! Elena Pourmal -! !$! October 7, 2002 -! !$! -! !$! HISTORY -! !$! -! !$! -! !$! NOTES -! !$! Commented out until 1.6 ? 10/08/2002 -! !$! -! !$! SOURCE -! SUBROUTINE h5scombine_hyperslab_f(space_id, operator, start, count, & -! hyper_id, hdferr, stride, block) -! IMPLICIT NONE -! INTEGER(HID_T), INTENT(IN) :: space_id ! Dataspace identifier -! INTEGER, INTENT(IN) :: operator ! Flag, valid values are: - ! H5S_SELECT_NOOP_F - ! H5S_SELECT_SET_F - ! H5S_SELECT_OR_F - ! H5S_SELECT_AND_F - ! H5S_SELECT_XOR_F - ! H5S_SELECT_NOTB_F - ! H5S_SELECT_NOTA_F - ! H5S_SELECT_APPEND_F - ! H5S_SELECT_PREPEND_F - ! -! INTEGER(HSIZE_T), DIMENSION(*), INTENT(IN) :: start - ! Starting coordinates of the hyperslab -! INTEGER(HSIZE_T), DIMENSION(*), INTENT(IN) :: count - ! Number of blocks to select - ! from dataspace -! INTEGER(HID_T), INTENT(OUT) :: hyper_id ! New hyperslab identifier -! INTEGER, INTENT(OUT) :: hdferr ! Error code -! INTEGER(HSIZE_T), DIMENSION(:), OPTIONAL, INTENT(IN) :: stride - ! Array of how many elements to move - ! in each direction -! INTEGER(HSIZE_T), DIMENSION(:), OPTIONAL, INTENT(IN) :: block - ! Sizes of element block -! INTEGER(HSIZE_T), DIMENSION(:), ALLOCATABLE :: def_block -! INTEGER(HSIZE_T), DIMENSION(:), ALLOCATABLE :: def_stride -! INTEGER :: rank -! INTEGER :: error1, error2 - -! INTERFACE -! INTEGER FUNCTION h5scombine_hyperslab_c(space_id, operator, & -! start, count, stride, block, hyper_id) -! USE H5GLOBAL -! !DEC$IF DEFINED(HDF5F90_WINDOWS) -! !DEC$ATTRIBUTES C,reference,decorate,alias:'H5SCOMBINE_HYPERSLAB_C'::h5scombine_hyperslab_c -! !DEC$ENDIF -! INTEGER(HID_T), INTENT(IN) :: space_id -! INTEGER, INTENT(IN) :: operator -! INTEGER(HSIZE_T), DIMENSION(*), INTENT(IN) :: start -! INTEGER(HSIZE_T), DIMENSION(*), INTENT(IN) :: count -! INTEGER(HSIZE_T), DIMENSION(*), OPTIONAL, INTENT(IN) :: stride -! INTEGER(HSIZE_T), DIMENSION(*), OPTIONAL, INTENT(IN) :: block -! INTEGER(HID_T), INTENT(OUT) :: hyper_id -! END FUNCTION h5scombine_hyperslab_c -! END INTERFACE - -! if (present(stride).and. present(block)) then -! hdferr = h5scombine_hyperslab_c(space_id, operator, start, count, & -! stride, block, hyper_id) -! return -! endif - ! Case of optional parameters. - ! - ! Find the rank of the dataspace to allocate memory for - ! default stride and block arrays. - ! -! CALL h5sget_simple_extent_ndims_f(space_id, rank, hdferr) -! if( hdferr .EQ. -1) return - ! -! if (present(stride).and. .not.present(block)) then -! allocate(def_block(rank), stat=error1) -! if (error1.NE.0) then -! hdferr = -1 -! return -! endif -! def_block = 1 -! hdferr = h5scombine_hyperslab_c(space_id, operator, start, count, & -! stride, def_block, hyper_id) -! deallocate(def_block) -! return -! endif - -! if (.not.present(stride).and. present(block)) then -! allocate(def_stride(rank), stat=error2) -! if (error2.NE.0) then -! hdferr = -1 -! return -! endif -! def_stride = 1 -! hdferr = h5scombine_hyperslab_c(space_id, operator, start, count, & -! def_stride, block, hyper_id) -! deallocate(def_stride) -! return -! endif -! allocate(def_block(rank), stat=error1) -! allocate(def_stride(rank), stat=error2) -! if ((error1.NE.0) .OR. (error2.NE.0)) then -! hdferr = -1 -! return -! endif -! def_block = 1 -! def_stride = 1 -! hdferr = h5scombine_hyperslab_c(space_id, operator, start, count, & -! def_stride, def_block, hyper_id) -! deallocate(def_block) -! deallocate(def_stride) - -! END SUBROUTINE h5scombine_hyperslab_f - -! !$! -! !$!****s* H5S/ -! !$! -! !$! NAME -! !$! h5scombine_select_f -! !$! -! !$! PURPOSE -! !$! Combine two hyperslab selections with an operation -! !$! and return a dataspace with resulting selection. -! !$! -! !$! INPUTS -! !$! space1_id - dataspace of selection to use -! !$! operator - flag, valid values are: -! !$! H5S_SELECT_NOOP_F -! !$! H5S_SELECT_SET_F -! !$! H5S_SELECT_OR_F -! !$! H5S_SELECT_AND_F -! !$! H5S_SELECT_XOR_F -! !$! H5S_SELECT_NOTB_F -! !$! H5S_SELECT_NOTA_F -! !$! H5S_SELECT_APPEND_F -! !$! H5S_SELECT_PREPEND_F -! !$! space2_id - dataspace of selection to use -! !$! OUTPUTS -! !$! ds_id - idataspace identifier with the new selection -! !$! hdferr: - error code -! !$! Success: 0 -! !$! Failure: -1 -! !$! OPTIONAL PARAMETERS - NONE -! !$! -! !$! AUTHOR -! !$! Elena Pourmal -! !$! October 7, 2002 -! !$! -! !$! HISTORY -! !$! -! !$! -! !$! NOTES commented out until 1.6 release(?) 10/08/2002 -! !$! - -! ! SOURCE -! !$ SUBROUTINE h5scombine_select_f(space1_id, operator, space2_id, & -! ds_id, hdferr) -! IMPLICIT NONE -! INTEGER(HID_T), INTENT(IN) :: space1_id ! First dataspace identifier -! INTEGER(HID_T), INTENT(IN) :: space2_id ! Second dataspace identifier -! INTEGER, INTENT(IN) :: operator ! Flag, valid values are: - ! H5S_SELECT_NOOP_F - ! H5S_SELECT_SET_F - ! H5S_SELECT_OR_F - ! H5S_SELECT_AND_F - ! H5S_SELECT_XOR_F - ! H5S_SELECT_NOTB_F - ! H5S_SELECT_NOTA_F - ! H5S_SELECT_APPEND_F - ! H5S_SELECT_PREPEND_F - ! -! INTEGER(HID_T), INTENT(OUT) :: ds_id ! New dataspace identifier -! INTEGER, INTENT(OUT) :: hdferr ! Error code -! -! INTERFACE -! INTEGER FUNCTION h5scombine_select_c(space1_id, operator, & -! space2_id, ds_id) -! USE H5GLOBAL -! !DEC$IF DEFINED(HDF5F90_WINDOWS) -! !DEC$ATTRIBUTES C,reference,decorate,alias:'H5SCOMBINE_SELECT_C'::h5scombine_select_c -! !DEC$ENDIF -! INTEGER(HID_T), INTENT(IN) :: space1_id -! INTEGER(HID_T), INTENT(IN) :: space2_id -! INTEGER, INTENT(IN) :: operator -! INTEGER(HID_T), INTENT(OUT) :: ds_id -! END FUNCTION h5scombine_select_c -! END INTERFACE - -! hdferr = h5scombine_select_c(space1_id, operator, space2_id, & -! ds_id) -! return - -! END SUBROUTINE h5scombine_select_f - -! !$! -! !$!****s* H5S/ -! !$! -! !$! NAME -! !$! h5sselect_select_f -! !$! -! !$! PURPOSE -! !$! Refine a hyperslab selection with an operation -! !$! using second hyperslab -! !$! -! !$! INPUTS -! !$! space1_id - dataspace of selection to modify -! !$! operator - flag, valid values are: -! !$! H5S_SELECT_NOOP_F -! !$! H5S_SELECT_SET_F -! !$! H5S_SELECT_OR_F -! !$! H5S_SELECT_AND_F -! !$! H5S_SELECT_XOR_F -! !$! H5S_SELECT_NOTB_F -! !$! H5S_SELECT_NOTA_F -! !$! H5S_SELECT_APPEND_F -! !$! H5S_SELECT_PREPEND_F -! !$! space2_id - dataspace of selection to use -! !$! -! !$! OUTPUTS -! !$! hdferr: - error code -! !$! Success: 0 -! !$! Failure: -1 -! !$! OPTIONAL PARAMETERS - NONE -! !$! -! !$! AUTHOR -! !$! Elena Pourmal -! !$! October 7, 2002 -! !$! -! !$! HISTORY -! !$! -! !$! -! !$! NOTESCommented out until 1.6 release(?) 10/08/2002 EIP -! !$! - -! ! SOURCE -! SUBROUTINE h5sselect_select_f(space1_id, operator, space2_id, & -! hdferr) -! IMPLICIT NONE -! INTEGER(HID_T), INTENT(INOUT) :: space1_id ! Dataspace identifier to - ! modify -! INTEGER(HID_T), INTENT(IN) :: space2_id ! Second dataspace identifier -! INTEGER, INTENT(IN) :: operator ! Flag, valid values are: - ! H5S_SELECT_NOOP_F - ! H5S_SELECT_SET_F - ! H5S_SELECT_OR_F - ! H5S_SELECT_AND_F - ! H5S_SELECT_XOR_F - ! H5S_SELECT_NOTB_F - ! H5S_SELECT_NOTA_F - ! H5S_SELECT_APPEND_F - ! H5S_SELECT_PREPEND_F - ! -! INTEGER, INTENT(OUT) :: hdferr ! Error code - -! INTERFACE -! INTEGER FUNCTION h5sselect_select_c(space1_id, operator, & -! space2_id) -! USE H5GLOBAL -! !DEC$IF DEFINED(HDF5F90_WINDOWS) -! !DEC$ATTRIBUTES C,reference,decorate,alias:'H5SSELECT_SELECT_C'::h5sselect_select_c -! !DEC$ENDIF -! INTEGER(HID_T), INTENT(INOUT) :: space1_id -! INTEGER(HID_T), INTENT(IN) :: space2_id -! INTEGER, INTENT(IN) :: operator -! END FUNCTION h5sselect_select_c -! END INTERFACE - -! hdferr = h5sselect_select_c(space1_id, operator, space2_id) -! return - -! END SUBROUTINE h5sselect_select_f ! !****s* H5S/h5sget_select_type_f diff --git a/fortran/src/H5_f.c b/fortran/src/H5_f.c index 018e121..bd8998e 100644 --- a/fortran/src/H5_f.c +++ b/fortran/src/H5_f.c @@ -567,6 +567,17 @@ h5init_flags_c( int_f *h5d_flags, size_t_f *h5d_size_flags, h5o_flags[24] = (int_f)H5O_TYPE_DATASET; /* Object is a dataset */ h5o_flags[25] = (int_f)H5O_TYPE_NAMED_DATATYPE; /* Object is a named data type */ h5o_flags[26] = (int_f)H5O_TYPE_NTYPES; /* Number of different object types */ + +/* Flags for H5Oget_info. + * These flags determine which fields will be filled in in the H5O_info_t + * struct. + */ + h5o_flags[27] = (int_f)H5O_INFO_ALL; /* (H5O_INFO_BASIC|H5O_INFO_TIME|H5O_INFO_NUM_ATTRS|H5O_INFO_HDR|H5O_INFO_META_SIZE) */ + h5o_flags[28] = (int_f)H5O_INFO_BASIC; /* Fill in the fileno, addr, type, and rc fields */ + h5o_flags[29] = (int_f)H5O_INFO_TIME; /* Fill in the atime, mtime, ctime, and btime fields */ + h5o_flags[30] = (int_f)H5O_INFO_NUM_ATTRS; /* Fill in the num_attrs field */ + h5o_flags[31] = (int_f)H5O_INFO_HDR; /* Fill in the hdr field */ + h5o_flags[32] = (int_f)H5O_INFO_META_SIZE; /* Fill in the meta_size field */ /* * H5P flags */ diff --git a/fortran/src/H5_ff.F90 b/fortran/src/H5_ff.F90 index fd5d437..2adc6aa 100644 --- a/fortran/src/H5_ff.F90 +++ b/fortran/src/H5_ff.F90 @@ -98,8 +98,8 @@ MODULE H5LIB ! ! H5O flags declaration ! - INTEGER, PARAMETER :: H5O_FLAGS_LEN = 27 - INTEGER, DIMENSION(1:H5O_FLAGS_LEN) :: H5o_flags + INTEGER, PARAMETER :: H5O_FLAGS_LEN = 33 + INTEGER, DIMENSION(1:H5O_FLAGS_LEN) :: H5O_flags ! ! H5P flags declaration ! @@ -146,8 +146,8 @@ MODULE H5LIB ! INTEGER, PARAMETER :: H5LIB_FLAGS_LEN = 2 INTEGER, DIMENSION(1:H5LIB_FLAGS_LEN) :: H5LIB_flags - - PUBLIC :: h5open_f, h5close_f, h5get_libversion_f, h5dont_atexit_f, h5kind_to_type, h5offsetof + + PUBLIC :: h5open_f, h5close_f, h5get_libversion_f, h5dont_atexit_f, h5kind_to_type, h5offsetof, h5gmtime PUBLIC :: h5garbage_collect_f, h5check_version_f CONTAINS @@ -508,7 +508,13 @@ CONTAINS H5O_TYPE_GROUP_F = h5o_flags(24) H5O_TYPE_DATASET_F = h5o_flags(25) H5O_TYPE_NAMED_DATATYPE_F = h5o_flags(26) - H5O_TYPE_NTYPES_F = h5o_flags(27) + H5O_TYPE_NTYPES_F = h5o_flags(27) + H5O_INFO_ALL_F = h5o_flags(28) + H5O_INFO_BASIC_F = h5o_flags(29) + H5O_INFO_TIME_F = h5o_flags(30) + H5O_INFO_NUM_ATTRS_F = h5o_flags(31) + H5O_INFO_HDR_F = h5o_flags(32) + H5O_INFO_META_SIZE_F = h5o_flags(33) ! ! H5P flags ! @@ -988,4 +994,62 @@ CONTAINS END FUNCTION h5offsetof +!****f* H5LIB_PROVISIONAL/h5gmtime +! +! NAME +! h5gmtime +! +! PURPOSE +! Convert time_t structure (C) to Fortran DATE AND TIME storage format. +! +! Inputs: +! stdtime_t - Object of type time_t that contains a time value +! +! Outputs: +! datetime - A date/time array using Fortran conventions: +! datetime(1) = year +! datetime(2) = month +! datetime(3) = day +! datetime(4) = 0 ! time is expressed as UTC (or GMT timezone) */ +! datetime(5) = hour +! datetime(6) = minute +! datetime(7) = second +! datetime(8) = millisecond -- not available, assigned - HUGE(0) +! +! AUTHOR +! M. Scot Breitenfeld +! January, 2019 +! +! Fortran Interface: + FUNCTION h5gmtime(stdtime_t) + IMPLICIT NONE + INTEGER(KIND=TIME_T), INTENT(IN) :: stdtime_t + INTEGER, DIMENSION(1:8) :: h5gmtime +!***** + TYPE(C_PTR) :: cptr + INTEGER(C_INT), DIMENSION(:), POINTER :: c_time + + INTERFACE + FUNCTION gmtime(stdtime_t) BIND(C, NAME='gmtime') + IMPORT :: TIME_T, C_PTR + IMPLICIT NONE + INTEGER(KIND=TIME_T) :: stdtime_t + TYPE(C_PTR) :: gmtime + END FUNCTION gmtime + END INTERFACE + + cptr = gmtime(stdtime_t) + CALL C_F_POINTER(cptr, c_time, [9]) + + h5gmtime(1) = INT(c_time(6)+1900) ! year starts at 1900 + h5gmtime(2) = INT(c_time(5)+1) ! month starts at 0 in C + h5gmtime(3) = INT(c_time(4)) ! day + h5gmtime(4) = 0 ! time is expressed as UTC (or GMT timezone) + h5gmtime(5) = INT(c_time(3)) ! hour + h5gmtime(6) = INT(c_time(2)) ! minute + h5gmtime(7) = INT(c_time(1)) ! second + h5gmtime(8) = -32767 ! millisecond is not available, assign it -HUGE(0) + + END FUNCTION h5gmtime + END MODULE H5LIB diff --git a/fortran/src/H5f90global.F90 b/fortran/src/H5f90global.F90 index 685026c..0a8a153 100644 --- a/fortran/src/H5f90global.F90 +++ b/fortran/src/H5f90global.F90 @@ -514,6 +514,13 @@ MODULE H5GLOBAL !DEC$ATTRIBUTES DLLEXPORT :: H5O_TYPE_DATASET_F !DEC$ATTRIBUTES DLLEXPORT :: H5O_TYPE_NAMED_DATATYPE_F !DEC$ATTRIBUTES DLLEXPORT :: H5O_TYPE_NTYPES_F + !DEC$ATTRIBUTES DLLEXPORT :: H5O_INFO_ALL_F + !DEC$ATTRIBUTES DLLEXPORT :: H5O_INFO_BASIC_F + !DEC$ATTRIBUTES DLLEXPORT :: H5O_INFO_TIME_F + !DEC$ATTRIBUTES DLLEXPORT :: H5O_INFO_NUM_ATTRS_F + !DEC$ATTRIBUTES DLLEXPORT :: H5O_INFO_HDR_F + !DEC$ATTRIBUTES DLLEXPORT :: H5O_INFO_META_SIZE_F + ! !DEC$endif INTEGER :: H5O_COPY_SHALLOW_HIERARCHY_F ! *** THESE VARIABLES DO @@ -543,6 +550,12 @@ MODULE H5GLOBAL INTEGER :: H5O_TYPE_DATASET_F INTEGER :: H5O_TYPE_NAMED_DATATYPE_F INTEGER :: H5O_TYPE_NTYPES_F + INTEGER :: H5O_INFO_ALL_F + INTEGER :: H5O_INFO_BASIC_F + INTEGER :: H5O_INFO_TIME_F + INTEGER :: H5O_INFO_NUM_ATTRS_F + INTEGER :: H5O_INFO_HDR_F + INTEGER :: H5O_INFO_META_SIZE_F ! ! H5P flags declaration ! diff --git a/fortran/src/H5f90proto.h b/fortran/src/H5f90proto.h index 49ffca3..4f0e5ef 100644 --- a/fortran/src/H5f90proto.h +++ b/fortran/src/H5f90proto.h @@ -120,9 +120,6 @@ H5_FCDLL int_f h5sset_extent_none_c( hid_t_f *space_id ); H5_FCDLL int_f h5sselect_hyperslab_c( hid_t_f *space_id , int_f *op, hsize_t_f *start, hsize_t_f *count, hsize_t_f *stride, hsize_t_f *block); H5_FCDLL int_f h5sget_select_type_c( hid_t_f *space_id , int_f *op); H5_FCDLL int_f h5sselect_elements_c( hid_t_f *space_id , int_f *op, size_t_f *nelements, hsize_t_f *coord); -H5_FCDLL int_f h5scombine_hyperslab_c( hid_t_f *space_id , int_f *op, hsize_t_f *start, hsize_t_f *count, hsize_t_f *stride, hsize_t_f *block, hid_t_f *hyper_id); -H5_FCDLL int_f h5scombine_select_c( hid_t_f *space1_id , int_f *op, hid_t_f *space2_id, hid_t_f *ds_id); -H5_FCDLL int_f h5sselect_select_c( hid_t_f *space1_id , int_f *op, hid_t_f *space2_id); H5_FCDLL int_f h5sdecode_c( _fcd buf, hid_t_f *obj_id ); H5_FCDLL int_f h5sencode_c(_fcd buf, hid_t_f *obj_id, size_t_f *nalloc ); H5_FCDLL int_f h5sextent_equal_c( hid_t_f * space1_id, hid_t_f *space2_id, hid_t_f *c_equal); @@ -314,14 +311,14 @@ H5_FCDLL int_f h5oclose_c(hid_t_f *object_id ); H5_FCDLL int_f h5oopen_by_addr_c(hid_t_f *loc_id, haddr_t_f *addr, hid_t_f *obj_id); H5_FCDLL int_f h5olink_c(hid_t_f *object_id, hid_t_f *new_loc_id, _fcd name, size_t_f *namelen, hid_t_f *lcpl_id, hid_t_f *lapl_id); -H5_FCDLL int_f h5ovisit_c(hid_t_f *group_id, int_f *index_type, int_f *order, H5O_iterate_t op, void *op_data); +H5_FCDLL int_f h5ovisit_c(hid_t_f *group_id, int_f *index_type, int_f *order, H5O_iterate_t op, void *op_data, int_f *fields); H5_FCDLL int_f h5ovisit_by_name_c(hid_t_f *loc_id, _fcd object_name, size_t_f *namelen, int_f *index_type, int_f *order, - H5O_iterate_t op, void *op_data, hid_t_f *lapl_id ); -H5_FCDLL int_f h5oget_info_c(hid_t_f *object_id, H5O_info_t_f *object_info); + H5O_iterate_t op, void *op_data, hid_t_f *lapl_id, int_f *fields ); +H5_FCDLL int_f h5oget_info_c(hid_t_f *object_id, H5O_info_t_f *object_info, int_f *fields); H5_FCDLL int_f h5oget_info_by_idx_c(hid_t_f *loc_id, _fcd group_name, size_t_f *namelen, - int_f *index_field, int_f *order, hsize_t_f *n, hid_t_f *lapl_id, H5O_info_t_f *object_info); + int_f *index_field, int_f *order, hsize_t_f *n, hid_t_f *lapl_id, H5O_info_t_f *object_info, int_f *fields); H5_FCDLL int_f h5oget_info_by_name_c(hid_t_f *loc_id, _fcd name, size_t_f *namelen, hid_t_f *lapl_id, - H5O_info_t_f *object_info); + H5O_info_t_f *object_info, int_f *fields); H5_FCDLL int_f h5ocopy_c(hid_t_f *src_loc_id, _fcd src_name, size_t_f *src_name_len, hid_t_f *dst_loc_id, _fcd dst_name, size_t_f *dst_name_len, hid_t_f *ocpypl_id, hid_t_f *lcpl_id ); diff --git a/fortran/src/H5match_types.c b/fortran/src/H5match_types.c index 7e0b7e8..57f7dda 100644 --- a/fortran/src/H5match_types.c +++ b/fortran/src/H5match_types.c @@ -191,6 +191,8 @@ int main(void) } if(sizeof(size_t) == IntKinds_SizeOf[i]) writeTypedef("size_t", "size_t", IntKinds[i]); + if(sizeof(time_t) == IntKinds_SizeOf[i]) + writeTypedef("time_t", "time_t", IntKinds[i]); if(sizeof(hsize_t) == IntKinds_SizeOf[i]) writeTypedef("hsize_t", "hsize_t", IntKinds[i]); } @@ -306,6 +308,17 @@ int main(void) return -1; } + /* time_t */ + for(i=0;i< FORTRAN_NUM_INTEGER_KINDS;i++) { + if(IntKinds_SizeOf[i] == H5_SIZEOF_TIME_T) { + writeToFiles("time_t","TIME_T", "time_t_f", IntKinds[i]); + break; + } + if(i == (FORTRAN_NUM_INTEGER_KINDS-1) ) + /* Error: couldn't find a size for time_t */ + return -1; + } + /* int */ writeToFiles("int","Fortran_INTEGER", "int_f", H5_FORTRAN_NATIVE_INTEGER_KIND); diff --git a/fortran/src/hdf5_fortrandll.def.in b/fortran/src/hdf5_fortrandll.def.in index ebe4fef..7a4647f 100644 --- a/fortran/src/hdf5_fortrandll.def.in +++ b/fortran/src/hdf5_fortrandll.def.in @@ -8,6 +8,7 @@ H5LIB_mp_H5GARBAGE_COLLECT_F H5LIB_mp_H5DONT_ATEXIT_F H5LIB_mp_H5KIND_TO_TYPE H5LIB_mp_H5OFFSETOF +H5LIB_mp_H5GMTIME ; H5A H5A_mp_H5AWRITE_CHAR_SCALAR H5A_mp_H5AREAD_CHAR_SCALAR @@ -99,6 +100,8 @@ H5F_mp_H5FIS_HDF5_F H5F_mp_H5FGET_NAME_F H5F_mp_H5FGET_FILESIZE_F H5F_mp_H5FGET_FILE_IMAGE_F +H5F_mp_H5FGET_DSET_NO_ATTRS_HINT_F +H5F_mp_H5FSET_DSET_NO_ATTRS_HINT_F ; H5G H5G_mp_H5GOPEN_F H5G_mp_H5GCREATE_F @@ -329,6 +332,8 @@ H5P_mp_H5PGET_VIRTUAL_VSPACE_F H5P_mp_H5PGET_VIRTUAL_SRCSPACE_F H5P_mp_H5PGET_VIRTUAL_FILENAME_F H5P_mp_H5PGET_VIRTUAL_DSETNAME_F +H5P_mp_H5PGET_DSET_NO_ATTRS_HINT_F +H5P_mp_H5PSET_DSET_NO_ATTRS_HINT_F ; Parallel @H5_NOPAREXP@H5P_mp_H5PSET_FAPL_MPIO_F @H5_NOPAREXP@H5P_mp_H5PGET_FAPL_MPIO_F diff --git a/fortran/test/CMakeTests.cmake b/fortran/test/CMakeTests.cmake index 4d06359..5fa10f4 100644 --- a/fortran/test/CMakeTests.cmake +++ b/fortran/test/CMakeTests.cmake @@ -58,7 +58,7 @@ add_test ( vds.h5 visit.h5 ) -if (NOT "${last_test}" STREQUAL "") +if (last_test) set_tests_properties (FORTRAN_testhdf5-clear-objects PROPERTIES DEPENDS ${last_test}) endif () set (last_test "FORTRAN_testhdf5-clear-objects") @@ -103,26 +103,24 @@ endif () set_tests_properties (FORTRAN_testhdf5_fortran_1_8 PROPERTIES DEPENDS FORTRAN_testhdf5_fortran) #-- Adding test for fortranlib_test_F03 -if (HDF5_ENABLE_F2003) - if (HDF5_ENABLE_USING_MEMCHECKER) - add_test (NAME FORTRAN_fortranlib_test_F03 COMMAND $<TARGET_FILE:fortranlib_test_F03>) - else () - add_test (NAME FORTRAN_fortranlib_test_F03 COMMAND "${CMAKE_COMMAND}" - -D "TEST_PROGRAM=$<TARGET_FILE:fortranlib_test_F03>" - -D "TEST_ARGS:STRING=" - -D "TEST_EXPECT=0" - -D "TEST_SKIP_COMPARE=TRUE" - -D "TEST_REGEX= 0 error.s." - -D "TEST_MATCH= 0 error(s)" - -D "TEST_OUTPUT=fortranlib_test_F03.txt" - #-D "TEST_REFERENCE=fortranlib_test_F03.out" - -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" - -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" - ) - endif () +if (HDF5_ENABLE_USING_MEMCHECKER) + add_test (NAME FORTRAN_fortranlib_test_F03 COMMAND $<TARGET_FILE:fortranlib_test_F03>) +else () + add_test (NAME FORTRAN_fortranlib_test_F03 COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:fortranlib_test_F03>" + -D "TEST_ARGS:STRING=" + -D "TEST_EXPECT=0" + -D "TEST_SKIP_COMPARE=TRUE" + -D "TEST_REGEX= 0 error.s." + -D "TEST_MATCH= 0 error(s)" + -D "TEST_OUTPUT=fortranlib_test_F03.txt" + #-D "TEST_REFERENCE=fortranlib_test_F03.out" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}" + -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + ) +endif () # set_tests_properties (FORTRAN_fortranlib_test_F03 PROPERTIES PASS_REGULAR_EXPRESSION "[ ]*0 error.s") set_tests_properties (FORTRAN_fortranlib_test_F03 PROPERTIES DEPENDS FORTRAN_testhdf5_fortran_1_8) -endif () #-- Adding test for fflush1 add_test (NAME FORTRAN_fflush1 COMMAND $<TARGET_FILE:fflush1>) @@ -215,26 +213,24 @@ if (BUILD_SHARED_LIBS) set_tests_properties (FORTRAN_testhdf5_fortran_1_8-shared PROPERTIES DEPENDS FORTRAN_testhdf5_fortran_1_8) #-- Adding test for fortranlib_test_F03 - if (HDF5_ENABLE_F2003) - if (HDF5_ENABLE_USING_MEMCHECKER) - add_test (NAME FORTRAN_fortranlib_test_F03-shared COMMAND $<TARGET_FILE:fortranlib_test_F03-shared>) - else () - add_test (NAME FORTRAN_fortranlib_test_F03-shared COMMAND "${CMAKE_COMMAND}" - -D "TEST_PROGRAM=$<TARGET_FILE:fortranlib_test_F03-shared>" - -D "TEST_ARGS:STRING=" - -D "TEST_EXPECT=0" - -D "TEST_SKIP_COMPARE=TRUE" - -D "TEST_REGEX= 0 error.s." - -D "TEST_MATCH= 0 error(s)" - -D "TEST_OUTPUT=fortranlib_test_F03.txt" - #-D "TEST_REFERENCE=fortranlib_test_F03.out" - -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/fshared" - -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" - ) - endif () -# set_tests_properties (FORTRAN_fortranlib_test_F03-shared PROPERTIES PASS_REGULAR_EXPRESSION "[ ]*0 error.s") - set_tests_properties (FORTRAN_fortranlib_test_F03-shared PROPERTIES DEPENDS FORTRAN_fortranlib_test_F03) + if (HDF5_ENABLE_USING_MEMCHECKER) + add_test (NAME FORTRAN_fortranlib_test_F03-shared COMMAND $<TARGET_FILE:fortranlib_test_F03-shared>) + else () + add_test (NAME FORTRAN_fortranlib_test_F03-shared COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:fortranlib_test_F03-shared>" + -D "TEST_ARGS:STRING=" + -D "TEST_EXPECT=0" + -D "TEST_SKIP_COMPARE=TRUE" + -D "TEST_REGEX= 0 error.s." + -D "TEST_MATCH= 0 error(s)" + -D "TEST_OUTPUT=fortranlib_test_F03.txt" + #-D "TEST_REFERENCE=fortranlib_test_F03.out" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/fshared" + -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + ) endif () +# set_tests_properties (FORTRAN_fortranlib_test_F03-shared PROPERTIES PASS_REGULAR_EXPRESSION "[ ]*0 error.s") + set_tests_properties (FORTRAN_fortranlib_test_F03-shared PROPERTIES DEPENDS FORTRAN_fortranlib_test_F03) #-- Adding test for fflush1 add_test (NAME FORTRAN_fflush1-shared COMMAND $<TARGET_FILE:fflush1-shared>) diff --git a/fortran/test/tH5F.F90 b/fortran/test/tH5F.F90 index d51803b..2501996 100644 --- a/fortran/test/tH5F.F90 +++ b/fortran/test/tH5F.F90 @@ -858,5 +858,4 @@ CONTAINS END SUBROUTINE file_space - END MODULE TH5F diff --git a/fortran/test/tH5O_F03.F90 b/fortran/test/tH5O_F03.F90 index 44c4bff..d1a9ddb 100644 --- a/fortran/test/tH5O_F03.F90 +++ b/fortran/test/tH5O_F03.F90 @@ -58,21 +58,224 @@ MODULE visit_cb TYPE, bind(c) :: ovisit_ud_t INTEGER :: idx ! Index in object visit structure TYPE(obj_visit_t), DIMENSION(1:info_size) :: info ! Pointer to the object visit structure to use + INTEGER :: field END TYPE ovisit_ud_t CONTAINS - INTEGER FUNCTION visit_obj_cb( group_id, name, oinfo, op_data) bind(C) +! Compares the field values of a C h5O_info_t and a Fortran H5O_info_t. + + INTEGER FUNCTION compare_h5o_info_t( oinfo_f, oinfo_c, field, full_f_field ) RESULT(status) + + IMPLICIT NONE + TYPE(h5o_info_t) :: oinfo_f + TYPE(c_h5o_info_t) :: oinfo_c + INTEGER :: field + LOGICAL :: full_f_field ! All the fields of Fortran H5O_info_t where filled +! local + INTEGER(C_INT), DIMENSION(1:8) :: atime, btime, ctime, mtime + INTEGER :: i + + status = 0 + + IF( (field .EQ. H5O_INFO_BASIC_F).OR.(field .EQ. H5O_INFO_ALL_F) )THEN + IF( (oinfo_f%fileno.LE.0) .OR. (oinfo_c%fileno .NE. oinfo_f%fileno) )THEN + status = -1 + RETURN + ENDIF + IF( (oinfo_f%addr.LE.0) .OR. (oinfo_c%addr .NE. oinfo_f%addr) )THEN + status = -1 + RETURN + ENDIF + IF( (oinfo_f%type.LT.0) .OR. (oinfo_c%type .NE. oinfo_f%type) )THEN + status = -1 + RETURN + ENDIF + IF( (oinfo_f%rc.LT.0) .OR. (oinfo_c%rc .NE. oinfo_f%rc) )THEN + status = -1 + RETURN + ENDIF + + ENDIF + + IF((field .EQ. H5O_INFO_TIME_F).OR.(field .EQ. H5O_INFO_ALL_F))THEN + + atime(1:8) = h5gmtime(oinfo_c%atime) + btime(1:8) = h5gmtime(oinfo_c%btime) + ctime(1:8) = h5gmtime(oinfo_c%ctime) + mtime(1:8) = h5gmtime(oinfo_c%mtime) + + DO i = 1, 8 + IF( (atime(i) .NE. oinfo_f%atime(i)) )THEN + status = -1 + RETURN + ENDIF + + IF( (btime(i) .NE. oinfo_f%btime(i)) )THEN + status = -1 + RETURN + ENDIF + + IF( (ctime(i) .NE. oinfo_f%ctime(i)) )THEN + status = -1 + RETURN + ENDIF + + IF( (mtime(i) .NE. oinfo_f%mtime(i)) )THEN + status = -1 + RETURN + ENDIF + ENDDO + + ELSE IF(field .EQ. H5O_INFO_TIME_F.AND. full_f_field)THEN + ! check other field values are not filled (using only a small subset to check) + status = 0 + IF( oinfo_c%fileno .NE. oinfo_f%fileno) status = status + 1 + IF( oinfo_c%addr .NE. oinfo_f%addr) status = status + 1 + IF( oinfo_c%type .NE. oinfo_f%type) status = status + 1 + IF( oinfo_c%rc .NE. oinfo_f%rc) status = status + 1 + IF(status.EQ.0) THEN ! There was no difference found, which is only possible if the field was filled. + status = -1 + RETURN + ENDIF + status = 0 ! reset + ENDIF + + IF((field .EQ. H5O_INFO_NUM_ATTRS_F).OR.(field .EQ. H5O_INFO_ALL_F))THEN + IF( (oinfo_f%num_attrs.LT.0) .OR. (oinfo_c%num_attrs .NE. oinfo_f%num_attrs) )THEN + status = -1 + RETURN + ENDIF + ELSE IF( field .EQ. H5O_INFO_ALL_F.AND.full_f_field)THEN + ! check other field values are not filled (using only a small subset to check) + status = 0 + IF( oinfo_c%fileno .NE. oinfo_f%fileno) status = status + 1 + IF( oinfo_c%addr .NE. oinfo_f%addr) status = status + 1 + IF( oinfo_c%type .NE. oinfo_f%type) status = status + 1 + IF( oinfo_c%rc .NE. oinfo_f%rc) status = status + 1 + IF(status.EQ.0) THEN ! There was no difference found, which is only possible if the field was filled. + status = -1 + RETURN + ENDIF + status = 0 ! reset + + ENDIF + + IF((field).EQ.H5O_INFO_HDR_F.OR.(field .EQ. H5O_INFO_ALL_F))THEN + IF( (oinfo_f%hdr%version.LT.0) .OR. (oinfo_c%hdr%version .NE. oinfo_f%hdr%version) )THEN + status = -1 + RETURN + ENDIF + IF( (oinfo_f%hdr%nmesgs.LT.0) .OR. (oinfo_c%hdr%nmesgs .NE. oinfo_f%hdr%nmesgs) )THEN + status = -1 + RETURN + ENDIF + IF( (oinfo_f%hdr%nchunks.LT.0) .OR. (oinfo_c%hdr%nchunks .NE. oinfo_f%hdr%nchunks) )THEN + status = -1 + RETURN + ENDIF + IF( (oinfo_f%hdr%flags.LT.0) .OR. (oinfo_c%hdr%flags .NE. oinfo_f%hdr%flags) )THEN + status = -1 + RETURN + ENDIF + IF( (oinfo_f%hdr%space%total.LT.0) .OR. (oinfo_c%hdr%space%total .NE. oinfo_f%hdr%space%total) )THEN + status = -1 + RETURN + ENDIF + IF( (oinfo_f%hdr%space%meta.LT.0) .OR. (oinfo_c%hdr%space%meta .NE. oinfo_f%hdr%space%meta) )THEN + status = -1 + RETURN + ENDIF + IF( (oinfo_f%hdr%space%mesg.LT.0) .OR. (oinfo_c%hdr%space%mesg .NE. oinfo_f%hdr%space%mesg) )THEN + status = -1 + RETURN + ENDIF + IF( (oinfo_f%hdr%space%free.LT.0) .OR. (oinfo_c%hdr%space%free .NE. oinfo_f%hdr%space%free) )THEN + status = -1 + RETURN + ENDIF + IF( (oinfo_f%hdr%mesg%present.LT.0) .OR. (oinfo_c%hdr%mesg%present .NE. oinfo_f%hdr%mesg%present) )THEN + status = -1 + RETURN + ENDIF + IF( (oinfo_f%hdr%mesg%shared.LT.0) .OR. (oinfo_c%hdr%mesg%shared .NE. oinfo_f%hdr%mesg%shared) )THEN + status = -1 + RETURN + ENDIF + ELSE IF( field .EQ. H5O_INFO_HDR_F.AND.full_f_field)THEN + ! check other field values are not filled (using only a small subset to check) + status = 0 + IF( oinfo_c%fileno .NE. oinfo_f%fileno) status = status + 1 + IF( oinfo_c%addr .NE. oinfo_f%addr) status = status + 1 + IF( oinfo_c%type .NE. oinfo_f%type) status = status + 1 + IF( oinfo_c%rc .NE. oinfo_f%rc) status = status + 1 + IF(status.EQ.0) THEN ! There was no difference found, which is only possible if the field was filled. + status = -1 + RETURN + ENDIF + status = 0 ! reset + ENDIF + IF((field).EQ.H5O_INFO_META_SIZE_F.OR.(field .EQ. H5O_INFO_ALL_F))THEN + IF((oinfo_f%meta_size%obj%index_size.LT.0).OR.(oinfo_c%meta_size%obj%index_size.NE.oinfo_f%meta_size%obj%index_size))THEN + status = -1 + RETURN + ENDIF + IF((oinfo_f%meta_size%obj%heap_size.LT.0).OR.(oinfo_c%meta_size%obj%heap_size.NE.oinfo_f%meta_size%obj%heap_size))THEN + status = -1 + RETURN + ENDIF + IF((oinfo_f%meta_size%attr%index_size.LT.0).OR.(oinfo_c%meta_size%attr%index_size.NE.oinfo_f%meta_size%attr%index_size))THEN + status = -1 + RETURN + ENDIF + IF((oinfo_f%meta_size%attr%heap_size.LT.0).OR.(oinfo_c%meta_size%attr%heap_size.NE.oinfo_f%meta_size%attr%heap_size))THEN + status = -1 + RETURN + ENDIF + ELSE IF( field .EQ. H5O_INFO_META_SIZE_F.AND.full_f_field)THEN + ! check other field values are not filled (using only a small subset to check) + status = 0 + IF( oinfo_c%fileno .NE. oinfo_f%fileno) status = status + 1 + IF( oinfo_c%addr .NE. oinfo_f%addr) status = status + 1 + IF( oinfo_c%type .NE. oinfo_f%type) status = status + 1 + IF( oinfo_c%rc .NE. oinfo_f%rc) status = status + 1 + IF(status.EQ.0) THEN ! There was no difference found, which is only possible if the field was filled. + status = -1 + RETURN + ENDIF + status = 0 ! reset + ENDIF + + END FUNCTION compare_h5o_info_t + + INTEGER FUNCTION visit_obj_cb( group_id, name, oinfo_c, op_data) bind(C) IMPLICIT NONE INTEGER(HID_T), VALUE :: group_id CHARACTER(LEN=1), DIMENSION(1:180) :: name - TYPE(h5o_info_t) :: oinfo + CHARACTER(LEN=180) :: name2 + TYPE(c_h5o_info_t) :: oinfo_c TYPE(ovisit_ud_t) :: op_data - + TYPE(h5o_info_t) :: oinfo_f +! +! MEMBER | TYPE | MEANING | RANGE +! A(1) = tm_sec int seconds after the minute 0-61* +! A(2) = tm_min int minutes after the hour 0-59 +! A(3) = tm_hour int hours since midnight 0-23 +! A(4) = tm_mday int day of the month 1-31 +! A(5) = tm_mon int months since January 0-11 +! A(6) = tm_year int years since 1900 +! A(7) = tm_wday int days since Sunday 0-6 +! A(8) = tm_yday int days since January 1 0-365 +! A(9) = tm_isdst int Daylight Saving Time flag +! + INTEGER(C_INT), DIMENSION(:), POINTER :: c_atime, c_btime, c_ctime, c_mtime + INTEGER(C_INT), DIMENSION(1:8) :: atime, btime, ctime, mtime INTEGER :: len, i INTEGER :: idx + INTEGER :: ierr + TYPE(C_PTR) :: cptr visit_obj_cb = 0 @@ -87,21 +290,53 @@ CONTAINS len = len - 1 ! Check for correct object information + name2(1:180) = "" + DO i = 1, len + name2(i:i) = name(i)(1:1) + ENDDO - idx = op_data%idx + IF(op_data%field .EQ. H5O_INFO_ALL_F)THEN - DO i = 1, len - IF(op_data%info(idx)%path(i)(1:1) .NE. name(i)(1:1))THEN - visit_obj_cb = -1 - RETURN - ENDIF - - IF(op_data%info(idx)%type_obj .NE. oinfo%type)THEN - visit_obj_cb = -1 - RETURN - ENDIF + idx = op_data%idx + + DO i = 1, len + IF(op_data%info(idx)%path(i)(1:1) .NE. name(i)(1:1))THEN + visit_obj_cb = -1 + RETURN + ENDIF + + IF(op_data%info(idx)%type_obj .NE. oinfo_c%type)THEN + visit_obj_cb = -1 + RETURN + ENDIF + ENDDO - ENDDO + ENDIF + + ! Check H5Oget_info_by_name_f; if partial field values where filled correctly + CALL H5Oget_info_by_name_f(group_id, name2, oinfo_f, ierr); + visit_obj_cb = compare_h5o_info_t( oinfo_f, oinfo_c, op_data%field, .TRUE. ) + IF(visit_obj_cb.EQ.-1) RETURN + + ! Check H5Oget_info_by_name_f, only check field values + CALL H5Oget_info_by_name_f(group_id, name2, oinfo_f, ierr, fields = op_data%field); + visit_obj_cb = compare_h5o_info_t( oinfo_f, oinfo_c, op_data%field, .FALSE. ) + IF(visit_obj_cb.EQ.-1) RETURN + + + IF(op_data%idx.EQ.1)THEN + + ! Check H5Oget_info_f, only check field values + CALL H5Oget_info_f(group_id, oinfo_f, ierr, fields = op_data%field); + visit_obj_cb = compare_h5o_info_t( oinfo_f, oinfo_c, op_data%field, .FALSE. ) + IF(visit_obj_cb.EQ.-1) RETURN + + ! Check H5Oget_info_f; if partial field values where filled correctly + CALL H5Oget_info_f(group_id, oinfo_f, ierr); + visit_obj_cb = compare_h5o_info_t( oinfo_f, oinfo_c, op_data%field, .TRUE. ) + IF(visit_obj_cb.EQ.-1) RETURN + + ENDIF ! Advance to next location in expected output op_data%idx = op_data%idx + 1 @@ -110,7 +345,6 @@ CONTAINS END MODULE visit_cb - MODULE TH5O_F03 CONTAINS @@ -310,29 +544,110 @@ SUBROUTINE obj_visit(total_error) udata%info(9)%type_obj = H5O_TYPE_NAMED_DATATYPE_F ! Visit all the objects reachable from the root group (with file ID) - udata%idx = 1 fun_ptr = C_FUNLOC(visit_obj_cb) f_ptr = C_LOC(udata) ! Test h5ovisit_f + udata%field = H5O_INFO_ALL_F + udata%idx = 1 CALL h5ovisit_f(fid, H5_INDEX_NAME_F, H5_ITER_INC_F, fun_ptr, f_ptr, ret_val, error) CALL check("h5ovisit_f", error, total_error) IF(ret_val.LT.0)THEN CALL check("h5ovisit_f", -1, total_error) ENDIF - ! Test h5ovisit_by_name_f + ! Test fields option + udata%field = H5O_INFO_ALL_F + udata%idx = 1 + CALL h5ovisit_f(fid, H5_INDEX_NAME_F, H5_ITER_INC_F, fun_ptr, f_ptr, ret_val, error, fields=udata%field) + CALL check("h5ovisit_f", error, total_error) + IF(ret_val.LT.0)THEN + CALL check("h5ovisit_f", -1, total_error) + ENDIF + udata%field = H5O_INFO_BASIC_F + udata%idx = 1 + CALL h5ovisit_f(fid, H5_INDEX_NAME_F, H5_ITER_INC_F, fun_ptr, f_ptr, ret_val, error, fields=udata%field) + CALL check("h5ovisit_f", error, total_error) + IF(ret_val.LT.0)THEN + CALL check("h5ovisit_f", -1, total_error) + ENDIF + udata%field = H5O_INFO_TIME_F + udata%idx = 1 + CALL h5ovisit_f(fid, H5_INDEX_NAME_F, H5_ITER_INC_F, fun_ptr, f_ptr, ret_val, error, fields=udata%field) + CALL check("h5ovisit_f", error, total_error) + IF(ret_val.LT.0)THEN + CALL check("h5ovisit_f", -1, total_error) + ENDIF + udata%field = H5O_INFO_NUM_ATTRS_F + udata%idx = 1 + CALL h5ovisit_f(fid, H5_INDEX_NAME_F, H5_ITER_INC_F, fun_ptr, f_ptr, ret_val, error, fields=udata%field) + CALL check("h5ovisit_f", error, total_error) + IF(ret_val.LT.0)THEN + CALL check("h5ovisit_f", -1, total_error) + ENDIF + udata%field = H5O_INFO_HDR_F + udata%idx = 1 + CALL h5ovisit_f(fid, H5_INDEX_NAME_F, H5_ITER_INC_F, fun_ptr, f_ptr, ret_val, error, fields=udata%field) + CALL check("h5ovisit_f", error, total_error) + IF(ret_val.LT.0)THEN + CALL check("h5ovisit_f", -1, total_error) + ENDIF + udata%field = H5O_INFO_META_SIZE_F + udata%idx = 1 + CALL h5ovisit_f(fid, H5_INDEX_NAME_F, H5_ITER_INC_F, fun_ptr, f_ptr, ret_val, error, fields=udata%field) + CALL check("h5ovisit_f", error, total_error) + IF(ret_val.LT.0)THEN + CALL check("h5ovisit_f", -1, total_error) + ENDIF + ! Test h5ovisit_by_name_f object_name = "/" udata%idx = 1 - - CALL h5ovisit_by_name_f(fid, object_name, H5_INDEX_NAME_F, H5_ITER_INC_F, fun_ptr, f_ptr, ret_val, error) + udata%field = H5O_INFO_ALL_F + CALL h5ovisit_by_name_f(fid, object_name, H5_INDEX_NAME_F, H5_ITER_INC_F, fun_ptr, f_ptr, ret_val, error, fields=udata%field) CALL check("h5ovisit_by_name_f", error, total_error) IF(ret_val.LT.0)THEN CALL check("h5ovisit_by_name_f", -1, total_error) ENDIF + ! Test fields option + udata%idx = 1 + udata%field = H5O_INFO_BASIC_F + CALL h5ovisit_by_name_f(fid, object_name, H5_INDEX_NAME_F, H5_ITER_INC_F, fun_ptr, f_ptr, ret_val, error, fields=udata%field) + CALL check("h5ovisit_by_name_f", error, total_error) + IF(ret_val.LT.0)THEN + CALL check("h5ovisit_by_name_f", -1, total_error) + ENDIF + udata%idx = 1 + udata%field = H5O_INFO_TIME_F + CALL h5ovisit_by_name_f(fid, object_name, H5_INDEX_NAME_F, H5_ITER_INC_F, fun_ptr, f_ptr, ret_val, error, fields=udata%field) + CALL check("h5ovisit_by_name_f", error, total_error) + IF(ret_val.LT.0)THEN + CALL check("h5ovisit_by_name_f", -1, total_error) + ENDIF + udata%idx = 1 + udata%field = H5O_INFO_NUM_ATTRS_F + CALL h5ovisit_by_name_f(fid, object_name, H5_INDEX_NAME_F, H5_ITER_INC_F, fun_ptr, f_ptr, ret_val, error, fields=udata%field) + CALL check("h5ovisit_by_name_f", error, total_error) + IF(ret_val.LT.0)THEN + CALL check("h5ovisit_by_name_f", -1, total_error) + ENDIF + udata%idx = 1 + udata%field = H5O_INFO_HDR_F + CALL h5ovisit_by_name_f(fid, object_name, H5_INDEX_NAME_F, H5_ITER_INC_F, fun_ptr, f_ptr, ret_val, error, fields=udata%field) + CALL check("h5ovisit_by_name_f", error, total_error) + IF(ret_val.LT.0)THEN + CALL check("h5ovisit_by_name_f", -1, total_error) + ENDIF + udata%idx = 1 + udata%field = H5O_INFO_META_SIZE_F + CALL h5ovisit_by_name_f(fid, object_name, H5_INDEX_NAME_F, H5_ITER_INC_F, fun_ptr, f_ptr, ret_val, error, fields=udata%field) + CALL check("h5ovisit_by_name_f", error, total_error) + IF(ret_val.LT.0)THEN + CALL check("h5ovisit_by_name_f", -1, total_error) + ENDIF + CALL h5fclose_f(fid, error) CALL check("h5fclose_f",error, total_error) @@ -450,11 +765,32 @@ SUBROUTINE obj_info(total_error) IF(oinfo%rc.NE.1)THEN CALL check("h5oget_info_by_idx_f", -1, total_error) ENDIF + IF(oinfo%type.NE.H5O_TYPE_DATASET_F)THEN + CALL check("h5oget_info_by_idx_f", -1, total_error) + ENDIF + ! Check partial fields + CALL h5oget_info_by_idx_f(gid, ".", H5_INDEX_NAME_F, H5_ITER_INC_F, 0_hsize_t, oinfo, error, fields=H5O_INFO_BASIC_F ) + CALL check("h5oget_info_by_idx_f", error, total_error) + + IF(oinfo%rc.NE.1)THEN + CALL check("h5oget_info_by_idx_f", -1, total_error) + ENDIF IF(oinfo%type.NE.H5O_TYPE_DATASET_F)THEN CALL check("h5oget_info_by_idx_f", -1, total_error) ENDIF + CALL h5oget_info_by_idx_f(gid, ".", H5_INDEX_NAME_F, H5_ITER_INC_F, 0_hsize_t, oinfo, error, fields=H5O_INFO_TIME_F ) + CALL check("h5oget_info_by_idx_f", error, total_error) + ! These field values should not be filled + IF(oinfo%rc.EQ.1)THEN + CALL check("h5oget_info_by_idx_f", -1, total_error) + ENDIF + IF(oinfo%type.EQ.H5O_TYPE_DATASET_F)THEN + CALL check("h5oget_info_by_idx_f", -1, total_error) + ENDIF + + ! Close objects CALL h5dclose_f(did, error) CALL check("h5dclose_f", error, total_error) @@ -483,11 +819,12 @@ SUBROUTINE build_visit_file(fid) USE TH5_MISC IMPLICIT NONE - INTEGER(hid_t) :: fid ! File ID - INTEGER(hid_t) :: gid = -1, gid2 = -1 ! Group IDs + INTEGER(hid_t) :: fid ! File ID + INTEGER(hid_t) :: gid = -1, gid2 = -1 ! Group IDs INTEGER(hid_t) :: sid = -1 ! Dataspace ID INTEGER(hid_t) :: did = -1 ! Dataset ID INTEGER(hid_t) :: tid = -1 ! Datatype ID + INTEGER(hid_t) :: aid = -1, aid2 = -1, aid3 = -1 ! Attribute ID CHARACTER(LEN=20) :: filename = 'visit.h5' INTEGER :: error @@ -500,6 +837,15 @@ SUBROUTINE build_visit_file(fid) ! Create nested group CALL H5Gcreate_f(gid, "Group2", gid2, error) + CALL H5Screate_f(H5S_SCALAR_F, sid, error) + CALL H5Acreate_f(gid2, "Attr1", H5T_NATIVE_INTEGER, sid, aid, error) + CALL H5Acreate_f(gid2, "Attr2", H5T_NATIVE_INTEGER, sid, aid2, error) + CALL H5Acreate_f(gid2, "Attr3", H5T_NATIVE_INTEGER, sid, aid3, error) + CALL H5Aclose_f(aid,error) + CALL H5Aclose_f(aid2,error) + CALL H5Aclose_f(aid3,error) + CALL H5Sclose_f(sid,error) + ! Close groups CALL h5gclose_f(gid2, error) CALL h5gclose_f(gid, error) diff --git a/fortran/test/tH5P.F90 b/fortran/test/tH5P.F90 index 563926b..c42dd7e 100644 --- a/fortran/test/tH5P.F90 +++ b/fortran/test/tH5P.F90 @@ -444,6 +444,7 @@ SUBROUTINE test_chunk_cache(cleanup, total_error) INTEGER(size_t) rdcc_nelmts INTEGER(size_t) rdcc_nbytes REAL :: rdcc_w0 + LOGICAL :: minimize ! Flag for minimized headers CALL h5_fixname_f(filename, fix_filename, H5P_DEFAULT_F, error) IF (error .NE. 0) THEN @@ -648,6 +649,57 @@ SUBROUTINE test_chunk_cache(cleanup, total_error) CALL verify("H5Pget_chunk_cache_f", INT(nbytes_2), INT(nbytes_4), total_error) CALL verify("H5Pget_chunk_cache_f", w0_3, w0_4, total_error) + ! Check that the dataset object header minimization hint + ! can be set and retrieved. + + ! H5P version + ! Check the default value + minimize = .TRUE. + CALL h5pget_dset_no_attrs_hint_f(dcpl, minimize, error) + CALL check("h5pget_dset_no_attrs_hint_f",error,total_error) + if(minimize .neqv. .FALSE.) then + total_error = total_error + 1 + write(*,*) "Default dataset minimize flag was incorrect (H5P)" + endif + + ! Check setter + minimize = .TRUE. + CALL h5pset_dset_no_attrs_hint_f(dcpl, minimize, error) + CALL check("h5pset_dset_no_attrs_hint_f",error,total_error) + + ! Check getter + minimize = .FALSE. + CALL h5pget_dset_no_attrs_hint_f(dcpl, minimize, error) + CALL check("h5pget_dset_no_attrs_hint_f",error,total_error) + if(minimize .neqv. .TRUE.) then + total_error = total_error + 1 + write(*,*) "Unable to get correct dataset minimize flag (H5P)" + endif + + ! H5F version + ! Check the default value + minimize = .TRUE. + CALL h5fget_dset_no_attrs_hint_f(fid, minimize, error) + CALL check("h5fget_dset_no_attrs_hint_f",error,total_error) + if(minimize .neqv. .FALSE.) then + total_error = total_error + 1 + write(*,*) "Default dataset minimize flag was incorrect (H5F)" + endif + + ! Check setter + minimize = .TRUE. + CALL h5fset_dset_no_attrs_hint_f(fid, minimize, error) + CALL check("h5fset_dset_no_attrs_hint_f",error,total_error) + + ! Check getter + minimize = .FALSE. + CALL h5fget_dset_no_attrs_hint_f(fid, minimize, error) + CALL check("h5fget_dset_no_attrs_hint_f",error,total_error) + if(minimize .neqv. .TRUE.) then + total_error = total_error + 1 + write(*,*) "Unable to get correct dataset minimize flag (H5F)" + endif + ! Close CALL H5Dclose_f(dsid, error) diff --git a/fortran/testpar/CMakeTests.cmake b/fortran/testpar/CMakeTests.cmake index d00a6fc..d0abe0e 100644 --- a/fortran/testpar/CMakeTests.cmake +++ b/fortran/testpar/CMakeTests.cmake @@ -15,4 +15,4 @@ ### T E S T I N G ### ############################################################################## ############################################################################## -add_test (NAME FORT_parallel_test COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_PREFLAGS} $<TARGET_FILE:parallel_test> ${MPIEXEC_POSTFLAGS}) +add_test (NAME MPI_TEST_FORT_parallel_test COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_PREFLAGS} $<TARGET_FILE:parallel_test> ${MPIEXEC_POSTFLAGS}) |