17 files changed, 483 insertions, 80 deletions
diff --git a/hl/Makefile.in b/hl/Makefile.in
index c9ccd81..932051e 100755
--- a/hl/Makefile.in
+++ b/hl/Makefile.in
@@ -34,6 +34,32 @@
 # each subdirectory manually.
 #
 # HDF5 High-Level Makefile(.in)
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
 VPATH = @srcdir@
@@ -300,11 +326,11 @@ LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc $(H5CCFLAGS)
-H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
-H5FC = $(bindir)/h5fc $(H5CCFLAGS)
-H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
-H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
 
 # The trace script; this is used on source files from the C library to
 # insert tracing macros.
diff --git a/hl/c++/Makefile.in b/hl/c++/Makefile.in
index 0381f16..f8a7f51 100644
--- a/hl/c++/Makefile.in
+++ b/hl/c++/Makefile.in
@@ -30,6 +30,32 @@
 #
 # High-Level API C++ Makefile(.in)
 # 
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
 VPATH = @srcdir@
@@ -296,11 +322,11 @@ LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc $(H5CCFLAGS)
-H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
-H5FC = $(bindir)/h5fc $(H5CCFLAGS)
-H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
-H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
 
 # The trace script; this is used on source files from the C library to
 # insert tracing macros.
diff --git a/hl/c++/examples/Makefile.am b/hl/c++/examples/Makefile.am
index 4cc97ba..51fabda 100644
--- a/hl/c++/examples/Makefile.am
+++ b/hl/c++/examples/Makefile.am
@@ -36,7 +36,7 @@ EXAMPLEDIR=$(docdir)/hdf5/examples/hl/c++
 
 # How to build programs using h5c++
 $(EXTRA_PROG): $(H5CPP)
-	$(H5CPP) $(CPPFLAGS) -o $@ $(srcdir)/$@.cpp
+	$(H5CPP) $(H5CCFLAGS) $(CPPFLAGS) -o $@ $(srcdir)/$@.cpp
 
 # List dependencies for each program.  Normally, automake would take
 # care of this for us, but if we tell automake about the programs it
diff --git a/hl/c++/examples/Makefile.in b/hl/c++/examples/Makefile.in
index 6b6ce21..7c7c18e 100644
--- a/hl/c++/examples/Makefile.in
+++ b/hl/c++/examples/Makefile.in
@@ -31,9 +31,48 @@
 # HDF5 Library Examples Makefile(.in)
 #
 
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
 # We can't tell automake about example programs, because they need to be
 # built using h5cc (or h5fc, etc.) instead of the standard compilers.
 # This creates some extra work for us.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
 VPATH = @srcdir@
@@ -293,11 +332,11 @@ LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc $(H5CCFLAGS)
-H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
-H5FC = $(bindir)/h5fc $(H5CCFLAGS)
-H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
-H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
 
 # The trace script; this is used on source files from the C library to
 # insert tracing macros.
@@ -524,7 +563,7 @@ uninstall-am: uninstall-info-am uninstall-local
 
 # How to build programs using h5c++
 $(EXTRA_PROG): $(H5CPP)
-	$(H5CPP) $(CPPFLAGS) -o $@ $(srcdir)/$@.cpp
+	$(H5CPP) $(H5CCFLAGS) $(CPPFLAGS) -o $@ $(srcdir)/$@.cpp
 
 # List dependencies for each program.  Normally, automake would take
 # care of this for us, but if we tell automake about the programs it
diff --git a/hl/c++/src/Makefile.in b/hl/c++/src/Makefile.in
index fe33395..60a1611 100644
--- a/hl/c++/src/Makefile.in
+++ b/hl/c++/src/Makefile.in
@@ -31,6 +31,32 @@
 # HDF5-C++ Makefile(.in)
 #
 
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
 
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
@@ -317,11 +343,11 @@ LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc $(H5CCFLAGS)
-H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
-H5FC = $(bindir)/h5fc $(H5CCFLAGS)
-H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
-H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
 
 # The trace script; this is used on source files from the C library to
 # insert tracing macros.
diff --git a/hl/c++/test/Makefile.in b/hl/c++/test/Makefile.in
index 63163de..638047e 100644
--- a/hl/c++/test/Makefile.in
+++ b/hl/c++/test/Makefile.in
@@ -30,6 +30,32 @@
 #
 # HDF5-C++ Makefile(.in)
 #
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
 VPATH = @srcdir@
@@ -312,11 +338,11 @@ LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc $(H5CCFLAGS)
-H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
-H5FC = $(bindir)/h5fc $(H5CCFLAGS)
-H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
-H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
 
 # The trace script; this is used on source files from the C library to
 # insert tracing macros.
diff --git a/hl/examples/Makefile.am b/hl/examples/Makefile.am
index 3642e29..3492368 100644
--- a/hl/examples/Makefile.am
+++ b/hl/examples/Makefile.am
@@ -46,10 +46,10 @@ INSTALL_FILES = ptExampleFL.c ptExampleVL.c
 # Additional dependencies for each program are listed below.
 if BUILD_PARALLEL_CONDITIONAL
 $(EXTRA_PROG): $(H5CC_PP)
-	$(H5CC_PP) $(CFLAGS) -o $@ $(srcdir)/$@.c;
+	$(H5CC_PP) $(H5CCFLAGS) $(CFLAGS) -o $@ $(srcdir)/$@.c;
 else
 $(EXTRA_PROG): $(H5CC)
-	$(H5CC) $(CFLAGS) -o $@ $(srcdir)/$@.c;
+	$(H5CC) $(H5CCFLAGS) $(CFLAGS) -o $@ $(srcdir)/$@.c;
 endif
 
 # ex_lite2 uses a file created by ex_lite1
diff --git a/hl/examples/Makefile.in b/hl/examples/Makefile.in
index 558a9ca..78d6b05 100644
--- a/hl/examples/Makefile.in
+++ b/hl/examples/Makefile.in
@@ -31,9 +31,48 @@
 # HDF5 Library Examples Makefile(.in)
 #
 
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
 # We can't tell automake about example programs, because they need to be
 # built using h5cc (or h5fc, etc.) instead of the standard compilers.
 # This creates some extra work for us.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
 VPATH = @srcdir@
@@ -293,11 +332,11 @@ LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc $(H5CCFLAGS)
-H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
-H5FC = $(bindir)/h5fc $(H5CCFLAGS)
-H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
-H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
 
 # The trace script; this is used on source files from the C library to
 # insert tracing macros.
@@ -531,9 +570,9 @@ uninstall-am: uninstall-info-am uninstall-local
 
 # Additional dependencies for each program are listed below.
 @BUILD_PARALLEL_CONDITIONAL_TRUE@$(EXTRA_PROG): $(H5CC_PP)
-@BUILD_PARALLEL_CONDITIONAL_TRUE@	$(H5CC_PP) $(CFLAGS) -o $@ $(srcdir)/$@.c;
+@BUILD_PARALLEL_CONDITIONAL_TRUE@	$(H5CC_PP) $(H5CCFLAGS) $(CFLAGS) -o $@ $(srcdir)/$@.c;
 @BUILD_PARALLEL_CONDITIONAL_FALSE@$(EXTRA_PROG): $(H5CC)
-@BUILD_PARALLEL_CONDITIONAL_FALSE@	$(H5CC) $(CFLAGS) -o $@ $(srcdir)/$@.c;
+@BUILD_PARALLEL_CONDITIONAL_FALSE@	$(H5CC) $(H5CCFLAGS) $(CFLAGS) -o $@ $(srcdir)/$@.c;
 
 # ex_lite2 uses a file created by ex_lite1
 ex_lite2.chkexe_: ex_lite1.chkexe_
diff --git a/hl/fortran/Makefile.in b/hl/fortran/Makefile.in
index 67f631a..5543cba 100644
--- a/hl/fortran/Makefile.in
+++ b/hl/fortran/Makefile.in
@@ -34,6 +34,32 @@
 # each subdirectory manually.
 #
 # HDF5 High-Level Makefile(.in)
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
 VPATH = @srcdir@
@@ -300,11 +326,11 @@ LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc $(H5CCFLAGS)
-H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
-H5FC = $(bindir)/h5fc $(H5CCFLAGS)
-H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
-H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
 
 # The trace script; this is used on source files from the C library to
 # insert tracing macros.
diff --git a/hl/fortran/examples/Makefile.am b/hl/fortran/examples/Makefile.am
index a4ff085..54ada7a 100644
--- a/hl/fortran/examples/Makefile.am
+++ b/hl/fortran/examples/Makefile.am
@@ -42,10 +42,10 @@ HDF_FORTRAN=yes
 # Tell automake how to build examples using h5fc
 if BUILD_PARALLEL_CONDITIONAL
 $(EXTRA_PROG): $(H5FC_PP)
-	$(H5FC_PP) $(FCFLAGS) -o $@ $(srcdir)/$@.f90;
+	$(H5FC_PP) $(H5CCFLAGS) $(FCFLAGS) -o $@ $(srcdir)/$@.f90;
 else
 $(EXTRA_PROG): $(H5FC)
-	$(H5FC) $(FCFLAGS) -o $@ $(srcdir)/$@.f90;
+	$(H5FC) $(H5CCFLAGS) $(FCFLAGS) -o $@ $(srcdir)/$@.f90;
 endif
 
 # Tell automake how to install examples
diff --git a/hl/fortran/examples/Makefile.in b/hl/fortran/examples/Makefile.in
index 5bd9b75..4940f08 100644
--- a/hl/fortran/examples/Makefile.in
+++ b/hl/fortran/examples/Makefile.in
@@ -31,9 +31,48 @@
 # HDF5-Fortran Examples Makefile(.in)
 #
 
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
 # We can't tell automake about example programs, because they need to be
 # built using h5cc (or h5fc, etc.) instead of the standard compilers.
 # This creates some extra work for us.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
 VPATH = @srcdir@
@@ -293,11 +332,11 @@ LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc $(H5CCFLAGS)
-H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
-H5FC = $(bindir)/h5fc $(H5CCFLAGS)
-H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
-H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
 
 # The trace script; this is used on source files from the C library to
 # insert tracing macros.
@@ -530,9 +569,9 @@ uninstall-am: uninstall-info-am uninstall-local
 
 # Tell automake how to build examples using h5fc
 @BUILD_PARALLEL_CONDITIONAL_TRUE@$(EXTRA_PROG): $(H5FC_PP)
-@BUILD_PARALLEL_CONDITIONAL_TRUE@	$(H5FC_PP) $(FCFLAGS) -o $@ $(srcdir)/$@.f90;
+@BUILD_PARALLEL_CONDITIONAL_TRUE@	$(H5FC_PP) $(H5CCFLAGS) $(FCFLAGS) -o $@ $(srcdir)/$@.f90;
 @BUILD_PARALLEL_CONDITIONAL_FALSE@$(EXTRA_PROG): $(H5FC)
-@BUILD_PARALLEL_CONDITIONAL_FALSE@	$(H5FC) $(FCFLAGS) -o $@ $(srcdir)/$@.f90;
+@BUILD_PARALLEL_CONDITIONAL_FALSE@	$(H5FC) $(H5CCFLAGS) $(FCFLAGS) -o $@ $(srcdir)/$@.f90;
 
 # How to create EXAMPLEDIR if it doesn't already exist
 $(EXAMPLEDIR):
diff --git a/hl/fortran/src/Makefile.in b/hl/fortran/src/Makefile.in
index 3851d95..5e1d24d 100644
--- a/hl/fortran/src/Makefile.in
+++ b/hl/fortran/src/Makefile.in
@@ -31,6 +31,32 @@
 #
 # HDF5 High-Level Fortran Makefile(.in)
 
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
 VPATH = @srcdir@
@@ -320,11 +346,11 @@ LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc $(H5CCFLAGS)
-H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
-H5FC = $(bindir)/h5fc $(H5CCFLAGS)
-H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
-H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
 
 # The trace script; this is used on source files from the C library to
 # insert tracing macros.
diff --git a/hl/fortran/test/Makefile.in b/hl/fortran/test/Makefile.in
index 0a753ce..c14540e 100644
--- a/hl/fortran/test/Makefile.in
+++ b/hl/fortran/test/Makefile.in
@@ -30,6 +30,32 @@
 #
 #
 # HDF5 High-Level Fortran Makefile(.in)
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
 VPATH = @srcdir@
@@ -319,11 +345,11 @@ LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc $(H5CCFLAGS)
-H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
-H5FC = $(bindir)/h5fc $(H5CCFLAGS)
-H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
-H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
 
 # The trace script; this is used on source files from the C library to
 # insert tracing macros.
diff --git a/hl/src/Makefile.in b/hl/src/Makefile.in
index 9ad03ca..78dd527 100644
--- a/hl/src/Makefile.in
+++ b/hl/src/Makefile.in
@@ -31,6 +31,32 @@
 # HDF5 High-Level Library Makefile(.in)
 #
 
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
 
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
@@ -318,11 +344,11 @@ LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc $(H5CCFLAGS)
-H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
-H5FC = $(bindir)/h5fc $(H5CCFLAGS)
-H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
-H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
 
 # The trace script; this is used on source files from the C library to
 # insert tracing macros.
diff --git a/hl/test/Makefile.in b/hl/test/Makefile.in
index 4bc964f..1ffd677 100644
--- a/hl/test/Makefile.in
+++ b/hl/test/Makefile.in
@@ -32,6 +32,32 @@
 #
 # HDF5 High-Level Test Makefile(.in)
 #
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
 VPATH = @srcdir@
@@ -336,11 +362,11 @@ LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc $(H5CCFLAGS)
-H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
-H5FC = $(bindir)/h5fc $(H5CCFLAGS)
-H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
-H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
 
 # The trace script; this is used on source files from the C library to
 # insert tracing macros.
diff --git a/hl/tools/Makefile.in b/hl/tools/Makefile.in
index decf482..6daadd8 100644
--- a/hl/tools/Makefile.in
+++ b/hl/tools/Makefile.in
@@ -30,6 +30,32 @@
 #
 # Tools HDF5 Makefile(.in)
 #
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
 VPATH = @srcdir@
@@ -297,11 +323,11 @@ LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc $(H5CCFLAGS)
-H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
-H5FC = $(bindir)/h5fc $(H5CCFLAGS)
-H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
-H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
 
 # The trace script; this is used on source files from the C library to
 # insert tracing macros.
diff --git a/hl/tools/gif2h5/Makefile.in b/hl/tools/gif2h5/Makefile.in
index 902a92c..9074db3 100644
--- a/hl/tools/gif2h5/Makefile.in
+++ b/hl/tools/gif2h5/Makefile.in
@@ -31,6 +31,32 @@
 # HDF5 Library Makefile(.in)
 #
 
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html.  COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page.  It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
 srcdir = @srcdir@
 top_srcdir = @top_srcdir@
 VPATH = @srcdir@
@@ -321,11 +347,11 @@ LIBH5CPP_HL = $(top_builddir)/hl/c++/src/libhdf5_hl_cpp.la
 # Scripts used to build examples
 # If only shared libraries have been installed, have h5cc build examples with
 # shared libraries instead of static libraries
-H5CC = $(bindir)/h5cc $(H5CCFLAGS)
-H5CC_PP = $(bindir)/h5pcc $(H5CCFLAGS)
-H5FC = $(bindir)/h5fc $(H5CCFLAGS)
-H5FC_PP = $(bindir)/h5pfc $(H5CCFLAGS)
-H5CPP = $(bindir)/h5c++ $(H5CCFLAGS)
+H5CC = $(bindir)/h5cc
+H5CC_PP = $(bindir)/h5pcc
+H5FC = $(bindir)/h5fc
+H5FC_PP = $(bindir)/h5pfc
+H5CPP = $(bindir)/h5c++
 
 # The trace script; this is used on source files from the C library to
 # insert tracing macros.