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-rw-r--r--hl/src/H5TB.c5849
-rw-r--r--hl/src/H5TBprivate.h1
-rw-r--r--hl/src/H5TBpublic.h20
3 files changed, 2879 insertions, 2991 deletions
diff --git a/hl/src/H5TB.c b/hl/src/H5TB.c
index bbe9be5..bdf4cad 100644
--- a/hl/src/H5TB.c
+++ b/hl/src/H5TB.c
@@ -81,180 +81,186 @@ herr_t H5TBmake_table( const char *table_title,
hsize_t chunk_size,
void *fill_data,
int compress,
- const void *data )
+ const void *buf )
{
-
- hid_t did;
- hid_t sid;
- hid_t mem_type_id;
- hid_t plist_id;
- hsize_t dims[1];
- hsize_t dims_chunk[1];
- hsize_t maxdims[1] = { H5S_UNLIMITED };
- char attr_name[255];
- char *member_name;
- hid_t attr_id;
- char aux[255];
- hsize_t i;
- unsigned char *tmp_buf;
-
- dims[0] = nrecords;
- dims_chunk[0] = chunk_size;
-
- /* Create the memory data type. */
- if ((mem_type_id = H5Tcreate (H5T_COMPOUND, type_size )) < 0)
- return -1;
-
- /* Insert fields. */
- for ( i = 0; i < nfields; i++)
- {
- if(H5Tinsert(mem_type_id, field_names[i], field_offset[i], field_types[i] ) < 0)
- return -1;
- }
-
- /* Create a simple data space with unlimited size */
- if((sid = H5Screate_simple( 1, dims, maxdims )) < 0)
- return -1;
-
- /* Modify dataset creation properties, i.e. enable chunking */
- plist_id = H5Pcreate(H5P_DATASET_CREATE);
- if(H5Pset_chunk(plist_id, 1, dims_chunk) < 0)
- return -1;
-
- /* Set the fill value using a struct as the data type. */
- if(fill_data)
- if(H5Pset_fill_value(plist_id, mem_type_id, fill_data) < 0)
- return -1;
-
- /*
- Dataset creation property list is modified to use
- GZIP compression with the compression effort set to 6.
- Note that compression can be used only when dataset is chunked.
- */
- if(compress)
- if(H5Pset_deflate(plist_id, 6) < 0)
- return -1;
-
- /* Create the dataset. */
- if((did = H5Dcreate2(loc_id, dset_name, mem_type_id, sid, H5P_DEFAULT, plist_id, H5P_DEFAULT)) < 0)
- goto out;
-
- /* Only write if there is something to write */
- if(data)
- /* Write data to the dataset. */
- if(H5Dwrite( did, mem_type_id, H5S_ALL, H5S_ALL, H5P_DEFAULT, data ) < 0)
- goto out;
-
- /* Terminate access to the data space. */
- if(H5Sclose(sid) < 0)
- goto out;
-
- /* End access to the dataset */
- if(H5Dclose(did) < 0)
- goto out;
-
- /* End access to the property list */
- if(H5Pclose(plist_id) < 0)
- goto out;
-
-/*-------------------------------------------------------------------------
- * Set the conforming table attributes
- *-------------------------------------------------------------------------
- */
-
- /* Attach the CLASS attribute */
- if(H5LTset_attribute_string( loc_id, dset_name, "CLASS", TABLE_CLASS ) < 0)
- goto out;
-
- /* Attach the VERSION attribute */
- if(H5LTset_attribute_string( loc_id, dset_name, "VERSION", "2.0" ) < 0)
- goto out;
-
- /* Attach the TITLE attribute */
- if(H5LTset_attribute_string( loc_id, dset_name, "TITLE", table_title ) < 0)
- goto out;
-
- /* Attach the FIELD_ name attribute */
- for ( i = 0; i < nfields; i++)
- {
-
- /* Get the member name */
- member_name = H5Tget_member_name( mem_type_id,(unsigned) i );
-
- strcpy( attr_name, "FIELD_" );
- sprintf( aux, "%d", (int)i );
- strcat( attr_name, aux );
- sprintf( aux, "%s", "_NAME" );
- strcat( attr_name, aux );
-
- /* Attach the attribute */
- if(H5LTset_attribute_string( loc_id, dset_name, attr_name, member_name ) < 0)
- goto out;
-
- free( member_name );
-
- }
-
- /* Attach the FIELD_ fill value attribute */
- if(fill_data )
- {
-
- tmp_buf = fill_data;
-
- /* Open the dataset. */
- if((did = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
- return -1;
-
- if (( sid = H5Screate(H5S_SCALAR)) < 0)
- goto out;
-
- for ( i = 0; i < nfields; i++)
- {
-
- /* Get the member name */
- member_name = H5Tget_member_name(mem_type_id, (unsigned)i);
-
- strcpy(attr_name, "FIELD_");
- sprintf(aux, "%d", (int)i);
- strcat(attr_name, aux);
- sprintf(aux, "%s", "_FILL");
- strcat(attr_name, aux);
-
- if((attr_id = H5Acreate2(did, attr_name, field_types[i], sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
-
- if(H5Awrite(attr_id, field_types[i], tmp_buf+field_offset[i]) < 0)
- goto out;
-
- if(H5Aclose(attr_id) < 0)
- goto out;
-
- free(member_name);
- }
-
- /* Close the dataset. */
- H5Dclose( did );
-
- /* Close data space. */
- H5Sclose( sid );
- }
-
- /* Release the datatype. */
- if(H5Tclose( mem_type_id ) < 0)
- return -1;
-
-return 0;
-
-/* error zone, gracefully close */
+
+ hid_t did;
+ hid_t sid;
+ hid_t mem_type_id;
+ hid_t plist_id;
+ hsize_t dims[1];
+ hsize_t dims_chunk[1];
+ hsize_t maxdims[1] = { H5S_UNLIMITED };
+ char attr_name[255];
+ char *member_name;
+ hid_t attr_id;
+ char aux[255];
+ hsize_t i;
+ unsigned char *tmp_buf;
+
+ dims[0] = nrecords;
+ dims_chunk[0] = chunk_size;
+
+ /* create the memory data type. */
+ if ((mem_type_id = H5Tcreate (H5T_COMPOUND, type_size )) < 0)
+ return -1;
+
+ /* insert fields. */
+ for ( i = 0; i < nfields; i++)
+ {
+ if(H5Tinsert(mem_type_id, field_names[i], field_offset[i], field_types[i] ) < 0)
+ return -1;
+ }
+
+ /* create a simple data space with unlimited size */
+ if ((sid = H5Screate_simple( 1, dims, maxdims )) < 0)
+ return -1;
+
+ /* modify dataset creation properties, i.e. enable chunking */
+ plist_id = H5Pcreate(H5P_DATASET_CREATE);
+ if (H5Pset_chunk(plist_id, 1, dims_chunk) < 0)
+ return -1;
+
+ /* set the fill value using a struct as the data type. */
+ if (fill_data)
+ {
+ if(H5Pset_fill_value(plist_id, mem_type_id, fill_data) < 0)
+ return -1;
+ }
+
+ /*
+ dataset creation property list is modified to use
+ GZIP compression with the compression effort set to 6.
+ */
+ if (compress)
+ {
+ if(H5Pset_deflate(plist_id, 6) < 0)
+ return -1;
+ }
+
+ /* create the dataset. */
+ if ((did = H5Dcreate2(loc_id, dset_name, mem_type_id, sid, H5P_DEFAULT, plist_id, H5P_DEFAULT)) < 0)
+ goto out;
+
+ /* only write if there is something to write */
+ if (buf)
+ {
+ /* Write data to the dataset. */
+ if (H5Dwrite( did, mem_type_id, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf ) < 0)
+ goto out;
+ }
+
+ /* terminate access to the data space. */
+ if (H5Sclose(sid) < 0)
+ goto out;
+
+ /* end access to the dataset */
+ if (H5Dclose(did) < 0)
+ goto out;
+
+ /* end access to the property list */
+ if (H5Pclose(plist_id) < 0)
+ goto out;
+
+ /*-------------------------------------------------------------------------
+ * set the conforming table attributes
+ *-------------------------------------------------------------------------
+ */
+
+ /* attach the CLASS attribute */
+ if (H5LTset_attribute_string( loc_id, dset_name, "CLASS", TABLE_CLASS ) < 0)
+ goto out;
+
+ /* attach the VERSION attribute */
+ if (H5LTset_attribute_string( loc_id, dset_name, "VERSION", TABLE_VERSION ) < 0)
+ goto out;
+
+ /* attach the TITLE attribute */
+ if (H5LTset_attribute_string( loc_id, dset_name, "TITLE", table_title ) < 0)
+ goto out;
+
+ /* attach the FIELD_ name attribute */
+ for ( i = 0; i < nfields; i++)
+ {
+ /* get the member name */
+ member_name = H5Tget_member_name( mem_type_id,(unsigned) i );
+
+ strcpy( attr_name, "FIELD_" );
+ sprintf( aux, "%d", (int)i );
+ strcat( attr_name, aux );
+ sprintf( aux, "%s", "_NAME" );
+ strcat( attr_name, aux );
+
+ /* attach the attribute */
+ if (H5LTset_attribute_string( loc_id, dset_name, attr_name, member_name ) < 0)
+ goto out;
+
+ free( member_name );
+
+ }
+
+ /* attach the FIELD_ fill value attribute */
+ if (fill_data )
+ {
+
+ tmp_buf = fill_data;
+
+ /* open the dataset. */
+ if ((did = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
+ return -1;
+
+ if (( sid = H5Screate(H5S_SCALAR)) < 0)
+ goto out;
+
+ for ( i = 0; i < nfields; i++)
+ {
+
+ /* get the member name */
+ member_name = H5Tget_member_name(mem_type_id, (unsigned)i);
+
+ strcpy(attr_name, "FIELD_");
+ sprintf(aux, "%d", (int)i);
+ strcat(attr_name, aux);
+ sprintf(aux, "%s", "_FILL");
+ strcat(attr_name, aux);
+
+ if ((attr_id = H5Acreate2(did, attr_name, field_types[i], sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ goto out;
+
+ if (H5Awrite(attr_id, field_types[i], tmp_buf+field_offset[i]) < 0)
+ goto out;
+
+ if (H5Aclose(attr_id) < 0)
+ goto out;
+
+ free(member_name);
+ }
+
+ /* terminate access to the data space. */
+ if (H5Sclose(sid) < 0)
+ goto out;
+
+ /* end access to the dataset */
+ if (H5Dclose(did) < 0)
+ goto out;
+ }
+
+ /* release the datatype. */
+ if (H5Tclose( mem_type_id ) < 0)
+ return -1;
+
+ return 0;
+
+ /* error zone */
out:
- H5E_BEGIN_TRY {
- H5Dclose(did);
- H5Sclose(sid);
- H5Pclose(plist_id);
- H5Tclose(mem_type_id);
- } H5E_END_TRY;
- return -1;
-
+ H5E_BEGIN_TRY {
+ H5Dclose(did);
+ H5Sclose(sid);
+ H5Pclose(plist_id);
+ H5Tclose(mem_type_id);
+ } H5E_END_TRY;
+ return -1;
+
}
/*-------------------------------------------------------------------------
@@ -280,7 +286,7 @@ out:
* Comments: Uses memory offsets
*
* Modifications: April 1, 2004
- * the DST_SIZES parameter is used to define the memory type ID
+ * the FIELD_SIZES parameter is used to define the memory type ID
* returned by H5TB_create_type
*
*-------------------------------------------------------------------------
@@ -292,60 +298,56 @@ herr_t H5TBappend_records( hid_t loc_id,
size_t type_size,
const size_t *field_offset,
const size_t *field_sizes,
- const void *data )
+ const void *buf )
{
- hid_t did;
- hid_t tid=-1;
- hid_t mem_type_id=-1;
- hid_t sid=-1;
- hid_t mem_space_id=-1;
- hsize_t nrecords_orig;
- hsize_t nfields;
-
- /* Get the original number of records and fields */
- if(H5TBget_table_info ( loc_id, dset_name, &nfields, &nrecords_orig ) < 0)
- return -1;
-
- /* Open the dataset. */
- if((did = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
- goto out;
-
- /* Get the datatypes */
- if((tid = H5Dget_type( did )) < 0)
- goto out;
-
- if ((mem_type_id=H5TB_create_type(loc_id,dset_name,type_size,field_offset,field_sizes,tid)) < 0)
- goto out;
-
- /* Append the records */
- if ((H5TB_common_append_records(did, mem_type_id, (size_t)nrecords, nrecords_orig, data)) < 0)
- goto out;
-
- /* Release the datatype. */
- if(H5Tclose( tid ) < 0)
- return -1;
-
- /* Release the datatype. */
- if(H5Tclose( mem_type_id ) < 0)
- goto out;
-
- /* End access to the dataset */
- if(H5Dclose( did ) < 0)
- goto out;
-
-
-return 0;
-
-/* error zone, gracefully close */
+ hid_t did;
+ hid_t tid=-1;
+ hid_t mem_type_id=-1;
+ hid_t sid=-1;
+ hid_t m_sid=-1;
+ hsize_t nrecords_orig;
+ hsize_t nfields;
+
+ /* get the original number of records and fields */
+ if (H5TBget_table_info ( loc_id, dset_name, &nfields, &nrecords_orig ) < 0)
+ return -1;
+
+ /* open the dataset. */
+ if ((did = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
+ goto out;
+
+ /* get the datatypes */
+ if ((tid = H5Dget_type( did )) < 0)
+ goto out;
+
+ if ((mem_type_id=H5TB_create_type(loc_id,dset_name,type_size,field_offset,field_sizes,tid)) < 0)
+ goto out;
+
+ /* append the records */
+ if ((H5TB_common_append_records(did, mem_type_id, (size_t)nrecords, nrecords_orig, buf)) < 0)
+ goto out;
+
+ /* close */
+ if (H5Tclose( tid ) < 0)
+ return -1;
+ if (H5Tclose( mem_type_id ) < 0)
+ goto out;
+ if (H5Dclose( did ) < 0)
+ goto out;
+
+ return 0;
+
+ /* error zone */
out:
- H5E_BEGIN_TRY {
- H5Dclose(did);
- H5Tclose(mem_type_id);
- H5Tclose(tid);
- H5Sclose(mem_space_id);
- H5Sclose(sid);
- } H5E_END_TRY;
- return -1;
+ H5E_BEGIN_TRY
+ {
+ H5Dclose(did);
+ H5Tclose(mem_type_id);
+ H5Tclose(tid);
+ H5Sclose(m_sid);
+ H5Sclose(sid);
+ } H5E_END_TRY;
+ return -1;
}
/*-------------------------------------------------------------------------
@@ -362,7 +364,7 @@ out:
* Comments: Uses memory offsets
*
* Modifications: April 1, 2004
- * the DST_SIZES parameter is used to define the memory type ID
+ * the FIELD_SIZES parameter is used to define the memory type ID
* returned by H5TB_create_type
*
*-------------------------------------------------------------------------
@@ -376,88 +378,80 @@ herr_t H5TBwrite_records( hid_t loc_id,
size_t type_size,
const size_t *field_offset,
const size_t *field_sizes,
- const void *data )
+ const void *buf )
{
-
- hid_t did;
- hid_t tid;
- hsize_t count[1];
- hsize_t offset[1];
- hid_t sid=-1;
- hid_t mem_space_id=-1;
- hsize_t mem_size[1];
- hsize_t dims[1];
- hid_t mem_type_id=-1;
-
- /* Open the dataset. */
- if((did = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
- return -1;
-
- /* Get the datatype */
- if((tid = H5Dget_type( did )) < 0)
- goto out;
-
- if ((mem_type_id=H5TB_create_type(loc_id,dset_name,type_size,field_offset,field_sizes,tid)) < 0)
- goto out;
-
- /* Get the dataspace handle */
- if((sid = H5Dget_space( did )) < 0)
- goto out;
-
- /* Get records */
- if(H5Sget_simple_extent_dims( sid, dims, NULL) < 0)
- goto out;
-
- if(start + nrecords > dims[0] )
- goto out;
-
- /* Define a hyperslab in the dataset of the size of the records */
- offset[0] = start;
- count[0] = nrecords;
- if(H5Sselect_hyperslab( sid, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
- goto out;
-
- /* Create a memory dataspace handle */
- mem_size[0] = count[0];
- if((mem_space_id = H5Screate_simple( 1, mem_size, NULL )) < 0)
- goto out;
-
- if(H5Dwrite( did, mem_type_id, mem_space_id, sid, H5P_DEFAULT, data ) < 0)
- goto out;
-
- /* Terminate access to the memory dataspace */
- if(H5Sclose( mem_space_id ) < 0)
- goto out;
-
- /* Terminate access to the dataspace */
- if(H5Sclose( sid ) < 0)
- goto out;
-
- /* Release the datatype. */
- if(H5Tclose( tid ) < 0)
- goto out;
-
- /* Release the datatype. */
- if(H5Tclose( mem_type_id ) < 0)
- return -1;
-
- /* End access to the dataset */
- if(H5Dclose( did ) < 0)
- return -1;
-
-
-return 0;
-
-/* error zone, gracefully close */
+
+ hid_t did;
+ hid_t tid;
+ hsize_t count[1];
+ hsize_t offset[1];
+ hid_t sid=-1;
+ hid_t m_sid=-1;
+ hsize_t mem_size[1];
+ hsize_t dims[1];
+ hid_t mem_type_id=-1;
+
+ /* open the dataset. */
+ if ((did = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
+ return -1;
+
+ /* get the datatype */
+ if ((tid = H5Dget_type( did )) < 0)
+ goto out;
+
+ if ((mem_type_id=H5TB_create_type(loc_id,dset_name,type_size,field_offset,field_sizes,tid)) < 0)
+ goto out;
+
+ /* get the dataspace handle */
+ if ((sid = H5Dget_space( did )) < 0)
+ goto out;
+
+ /* get records */
+ if (H5Sget_simple_extent_dims( sid, dims, NULL) < 0)
+ goto out;
+
+ if (start + nrecords > dims[0] )
+ goto out;
+
+ /* define a hyperslab in the dataset of the size of the records */
+ offset[0] = start;
+ count[0] = nrecords;
+ if (H5Sselect_hyperslab( sid, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
+ goto out;
+
+ /* create a memory dataspace handle */
+ mem_size[0] = count[0];
+ if ((m_sid = H5Screate_simple( 1, mem_size, NULL )) < 0)
+ goto out;
+
+ if (H5Dwrite( did, mem_type_id, m_sid, sid, H5P_DEFAULT, buf ) < 0)
+ goto out;
+
+ /* close */
+ if (H5Sclose( m_sid ) < 0)
+ goto out;
+ if (H5Sclose( sid ) < 0)
+ goto out;
+ if (H5Tclose( tid ) < 0)
+ goto out;
+ if (H5Tclose( mem_type_id ) < 0)
+ return -1;
+ if (H5Dclose( did ) < 0)
+ return -1;
+
+ return 0;
+
+ /* error zone */
out:
- H5E_BEGIN_TRY {
- H5Dclose(did);
- H5Tclose(mem_type_id);
- H5Tclose(tid);
- H5Sclose(mem_space_id);
- H5Sclose(sid);
- } H5E_END_TRY;
- return -1;
+ H5E_BEGIN_TRY
+ {
+ H5Dclose(did);
+ H5Tclose(mem_type_id);
+ H5Tclose(tid);
+ H5Sclose(m_sid);
+ H5Sclose(sid);
+ } H5E_END_TRY;
+ return -1;
}
/*-------------------------------------------------------------------------
@@ -474,8 +468,7 @@ out:
* Comments:
*
* Modifications: April 1, 2004
- * the DST_SIZES parameter is used to define the memory type ID
- * returned by H5TB_create_type
+ * the FIELD_SIZES parameter is used to define a memory type ID
*
*-------------------------------------------------------------------------
*/
@@ -487,144 +480,144 @@ herr_t H5TBwrite_fields_name( hid_t loc_id,
size_t type_size,
const size_t *field_offset,
const size_t *field_sizes,
- const void *data )
+ const void *buf )
{
-
- hid_t did;
- hid_t tid=-1;
- hid_t write_type_id=-1;
- hid_t member_type_id;
- hid_t nmtype_id;
- hsize_t count[1];
- hsize_t offset[1];
- hid_t mem_space_id=-1;
- hid_t file_space_id=-1;
- char *member_name;
- hssize_t nfields;
- hssize_t i, j;
- hid_t PRESERVE;
- size_t size_native;
-
- /* Create xfer properties to preserve initialized data */
- if ((PRESERVE = H5Pcreate (H5P_DATASET_XFER)) < 0)
- return -1;
- if (H5Pset_preserve (PRESERVE, 1) < 0)
- return -1;
-
- /* Open the dataset. */
- if((did = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
- goto out;
-
- /* Get the datatype */
- if((tid = H5Dget_type( did )) < 0)
- goto out;
-
- /* Get the number of fields */
- if(( nfields = H5Tget_nmembers( tid )) < 0)
- goto out;
-
- /* Create a write id */
- if(( write_type_id = H5Tcreate( H5T_COMPOUND, type_size )) < 0)
- goto out;
-
- j = 0;
-
- /* Iterate tru the members */
- for ( i = 0; i < nfields; i++)
- {
- /* Get the member name */
- member_name = H5Tget_member_name( tid, (unsigned)i );
-
- if(H5TB_find_field( member_name, field_names ) > 0 )
- {
-
- /* Get the member type */
- if(( member_type_id = H5Tget_member_type( tid,(unsigned) i )) < 0)
- goto out;
-
- /* Convert to native type */
- if ((nmtype_id=H5Tget_native_type(member_type_id,H5T_DIR_DEFAULT)) < 0)
- goto out;
-
- size_native=H5Tget_size(nmtype_id);
-
- /* Adjust, if necessary */
- if (field_sizes[j]!=size_native)
- {
- if (H5Tset_size(nmtype_id, field_sizes[j]) < 0)
- goto out;
- }
-
- /* The field in the file is found by its name */
- if(field_offset )
- {
- if(H5Tinsert( write_type_id, member_name, field_offset[j], nmtype_id ) < 0)
- goto out;
- }
- /* Only one field */
- else
- {
- if(H5Tinsert( write_type_id, member_name, (size_t)0, nmtype_id ) < 0)
- goto out;
- }
-
- j++;
-
- /* Close */
- if(H5Tclose( member_type_id ) < 0)
- goto out;
- if(H5Tclose( nmtype_id ) < 0)
- goto out;
- }
-
- free( member_name );
-
- }
-
- /* Get the dataspace handle */
- if((file_space_id = H5Dget_space( did )) < 0)
- goto out;
- if((mem_space_id = H5Screate_simple(1, &nrecords, NULL)) < 0)
- goto out;
-
- /* Define a hyperslab in the dataset */
- offset[0] = start;
- count[0] = nrecords;
- if(H5Sselect_hyperslab( file_space_id, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
- goto out;
-
- /* Write */
- if(H5Dwrite( did, write_type_id, mem_space_id, file_space_id, PRESERVE, data ) < 0)
- goto out;
-
- /* close */
- if(H5Tclose( write_type_id ) )
- goto out;
- if(H5Tclose( tid ) < 0)
- return -1;
- if(H5Dclose( did ) < 0)
- return -1;
- if(H5Pclose( PRESERVE ) < 0)
- return -1;
- if(H5Sclose( file_space_id ) < 0)
- return -1;
- if(H5Sclose( mem_space_id ) < 0)
- return -1;
-
-return 0;
-
- /* error zone, gracefully close */
+ hid_t did;
+ hid_t tid=-1;
+ hid_t write_type_id=-1;
+ hid_t member_type_id;
+ hid_t nmtype_id;
+ hsize_t count[1];
+ hsize_t offset[1];
+ hid_t m_sid=-1;
+ hid_t file_space_id=-1;
+ char *member_name;
+ hssize_t nfields;
+ hssize_t i, j;
+ hid_t preserve_id;
+ size_t size_native;
+
+ /* create xfer properties to preserve initialized data */
+ if ((preserve_id = H5Pcreate (H5P_DATASET_XFER)) < 0)
+ return -1;
+ if (H5Pset_preserve (preserve_id, 1) < 0)
+ return -1;
+
+ /* open the dataset. */
+ if ((did = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
+ goto out;
+
+ /* get the datatype */
+ if ((tid = H5Dget_type( did )) < 0)
+ goto out;
+
+ /* get the number of fields */
+ if (( nfields = H5Tget_nmembers( tid )) < 0)
+ goto out;
+
+ /* create a write id */
+ if (( write_type_id = H5Tcreate( H5T_COMPOUND, type_size )) < 0)
+ goto out;
+
+ j = 0;
+
+ /* iterate tru the members */
+ for ( i = 0; i < nfields; i++)
+ {
+ /* get the member name */
+ member_name = H5Tget_member_name( tid, (unsigned)i );
+
+ if(H5TB_find_field( member_name, field_names ) > 0 )
+ {
+
+ /* get the member type */
+ if(( member_type_id = H5Tget_member_type( tid,(unsigned) i )) < 0)
+ goto out;
+
+ /* convert to native type */
+ if ((nmtype_id=H5Tget_native_type(member_type_id,H5T_DIR_DEFAULT)) < 0)
+ goto out;
+
+ size_native=H5Tget_size(nmtype_id);
+
+ /* adjust, if necessary */
+ if (field_sizes[j]!=size_native)
+ {
+ if (H5Tset_size(nmtype_id, field_sizes[j]) < 0)
+ goto out;
+ }
+
+ /* the field in the file is found by its name */
+ if (field_offset )
+ {
+ if (H5Tinsert( write_type_id, member_name, field_offset[j], nmtype_id ) < 0)
+ goto out;
+ }
+ /* only one field */
+ else
+ {
+ if (H5Tinsert( write_type_id, member_name, (size_t)0, nmtype_id ) < 0)
+ goto out;
+ }
+
+ j++;
+
+ /* close */
+ if(H5Tclose( member_type_id ) < 0)
+ goto out;
+ if(H5Tclose( nmtype_id ) < 0)
+ goto out;
+ }
+
+ free( member_name );
+
+ }
+
+ /* get the dataspace handle */
+ if ((file_space_id = H5Dget_space( did )) < 0)
+ goto out;
+ if ((m_sid = H5Screate_simple(1, &nrecords, NULL)) < 0)
+ goto out;
+
+ /* define a hyperslab in the dataset */
+ offset[0] = start;
+ count[0] = nrecords;
+ if (H5Sselect_hyperslab( file_space_id, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
+ goto out;
+
+ /* write */
+ if (H5Dwrite( did, write_type_id, m_sid, file_space_id, preserve_id, buf ) < 0)
+ goto out;
+
+ /* close */
+ if(H5Tclose( write_type_id ) )
+ goto out;
+ if(H5Tclose( tid ) < 0)
+ return -1;
+ if(H5Dclose( did ) < 0)
+ return -1;
+ if(H5Pclose( preserve_id ) < 0)
+ return -1;
+ if(H5Sclose( file_space_id ) < 0)
+ return -1;
+ if(H5Sclose( m_sid ) < 0)
+ return -1;
+
+ return 0;
+
+ /* error zone */
out:
- H5E_BEGIN_TRY {
- H5Pclose(PRESERVE);
- H5Dclose(did);
- H5Sclose(file_space_id);
- H5Sclose(mem_space_id);
- H5Tclose(write_type_id);
- H5Tclose(tid);
- } H5E_END_TRY;
- return -1;
-
+ H5E_BEGIN_TRY
+ {
+ H5Pclose(preserve_id);
+ H5Dclose(did);
+ H5Sclose(file_space_id);
+ H5Sclose(m_sid);
+ H5Tclose(write_type_id);
+ H5Tclose(tid);
+ } H5E_END_TRY;
+ return -1;
+
}
@@ -643,8 +636,7 @@ out:
* Comments: Uses memory offsets
*
* Modifications: April 1, 2004
- * the DST_SIZES parameter is used to define the memory type ID
- * returned by H5TB_create_type
+ * the FIELD_SIZES parameter is used to define a memory type ID
*
*-------------------------------------------------------------------------
*/
@@ -659,131 +651,131 @@ herr_t H5TBwrite_fields_index( hid_t loc_id,
size_t type_size,
const size_t *field_offset,
const size_t *field_sizes,
- const void *data )
+ const void *buf )
{
-
- hid_t did;
- hid_t tid=-1;
- hid_t write_type_id=-1;
- hid_t member_type_id;
- hid_t nmtype_id;
- hsize_t count[1];
- hsize_t offset[1];
- hid_t mem_space_id=-1;
- hid_t file_space_id=-1;
- char *member_name;
- hsize_t i, j;
- hid_t PRESERVE;
- size_t size_native;
-
- /* Create xfer properties to preserve initialized data */
- if ((PRESERVE = H5Pcreate (H5P_DATASET_XFER)) < 0)
- return -1;
- if (H5Pset_preserve (PRESERVE, 1) < 0)
- return -1;
-
- /* Open the dataset. */
- if((did = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
- goto out;
-
- /* Get the datatype */
- if((tid = H5Dget_type( did )) < 0)
- goto out;
-
- /* Create a write id */
- if(( write_type_id = H5Tcreate( H5T_COMPOUND, type_size )) < 0)
- goto out;
-
- /* Iterate tru the members */
- for ( i = 0; i < nfields; i++)
- {
-
- j = field_index[i];
-
- /* Get the member name */
- member_name = H5Tget_member_name( tid, (unsigned) j );
-
- /* Get the member type */
- if(( member_type_id = H5Tget_member_type( tid, (unsigned) j )) < 0)
- goto out;
-
- /* Convert to native type */
- if ((nmtype_id=H5Tget_native_type(member_type_id,H5T_DIR_DEFAULT)) < 0)
- goto out;
-
- size_native=H5Tget_size(nmtype_id);
-
- if (field_sizes[i]!=size_native)
- {
- if (H5Tset_size(nmtype_id, field_sizes[i]) < 0)
- goto out;
- }
-
- /* The field in the file is found by its name */
- if(field_offset )
- {
- if(H5Tinsert( write_type_id, member_name, field_offset[ i ], nmtype_id ) < 0)
- goto out;
- }
- /* Only one field */
- else
- {
- if(H5Tinsert( write_type_id, member_name, (size_t)0, nmtype_id ) < 0)
- goto out;
- }
- /* Close */
- if(H5Tclose( member_type_id ) < 0)
- goto out;
- if(H5Tclose( nmtype_id ) < 0)
- goto out;
-
- free( member_name );
-
- }
-
- /* Get the dataspace handles */
- if((file_space_id = H5Dget_space( did )) < 0)
- goto out;
- if((mem_space_id = H5Screate_simple(1, &nrecords, NULL)) < 0)
- goto out;
-
- /* Define a hyperslab in the dataset */
- offset[0] = start;
- count[0] = nrecords;
- if(H5Sselect_hyperslab( file_space_id, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
- goto out;
-
- /* Write */
- if(H5Dwrite( did, write_type_id, mem_space_id, file_space_id, PRESERVE, data ) < 0)
- goto out;
-
- /* close */
- if(H5Tclose( write_type_id ) )
- goto out;
- if(H5Tclose( tid ) < 0)
- return -1;
- if(H5Dclose( did ) < 0)
- return -1;
- if(H5Pclose( PRESERVE ) < 0)
- return -1;
- if(H5Sclose( file_space_id ) < 0)
- return -1;
- if(H5Sclose( mem_space_id ) < 0)
- return -1;
-
-return 0;
-
- /* error zone, gracefully close */
+ hid_t did;
+ hid_t tid=-1;
+ hid_t write_type_id=-1;
+ hid_t member_type_id;
+ hid_t nmtype_id;
+ hsize_t count[1];
+ hsize_t offset[1];
+ hid_t m_sid=-1;
+ hid_t file_space_id=-1;
+ char *member_name;
+ hsize_t i, j;
+ hid_t preserve_id;
+ size_t size_native;
+
+ /* create xfer properties to preserve initialized data */
+ if ((preserve_id = H5Pcreate (H5P_DATASET_XFER)) < 0)
+ return -1;
+ if (H5Pset_preserve (preserve_id, 1) < 0)
+ return -1;
+
+ /* open the dataset. */
+ if ((did = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
+ goto out;
+
+ /* get the datatype */
+ if ((tid = H5Dget_type( did )) < 0)
+ goto out;
+
+ /* create a write id */
+ if (( write_type_id = H5Tcreate( H5T_COMPOUND, type_size )) < 0)
+ goto out;
+
+ /* iterate tru the members */
+ for ( i = 0; i < nfields; i++)
+ {
+
+ j = field_index[i];
+
+ /* get the member name */
+ member_name = H5Tget_member_name( tid, (unsigned) j );
+
+ /* get the member type */
+ if (( member_type_id = H5Tget_member_type( tid, (unsigned) j )) < 0)
+ goto out;
+
+ /* convert to native type */
+ if ((nmtype_id = H5Tget_native_type(member_type_id,H5T_DIR_DEFAULT)) < 0)
+ goto out;
+
+ size_native = H5Tget_size(nmtype_id);
+
+ if (field_sizes[i]!=size_native)
+ {
+ if (H5Tset_size(nmtype_id, field_sizes[i]) < 0)
+ goto out;
+ }
+
+ /* the field in the file is found by its name */
+ if ( field_offset )
+ {
+ if (H5Tinsert( write_type_id, member_name, field_offset[ i ], nmtype_id ) < 0)
+ goto out;
+ }
+ /* only one field */
+ else
+ {
+ if (H5Tinsert( write_type_id, member_name, (size_t)0, nmtype_id ) < 0)
+ goto out;
+ }
+ /* close */
+ if(H5Tclose( member_type_id ) < 0)
+ goto out;
+ if(H5Tclose( nmtype_id ) < 0)
+ goto out;
+
+ free( member_name );
+
+ }
+
+ /* get the dataspace handles */
+ if ((file_space_id = H5Dget_space( did )) < 0)
+ goto out;
+ if ((m_sid = H5Screate_simple(1, &nrecords, NULL)) < 0)
+ goto out;
+
+ /* define a hyperslab in the dataset */
+ offset[0] = start;
+ count[0] = nrecords;
+ if (H5Sselect_hyperslab( file_space_id, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
+ goto out;
+
+ /* write */
+ if (H5Dwrite( did, write_type_id, m_sid, file_space_id, preserve_id, buf ) < 0)
+ goto out;
+
+ /* close */
+ if (H5Tclose( write_type_id ) )
+ goto out;
+ if (H5Tclose( tid ) < 0)
+ return -1;
+ if (H5Dclose( did ) < 0)
+ return -1;
+ if (H5Pclose( preserve_id ) < 0)
+ return -1;
+ if (H5Sclose( file_space_id ) < 0)
+ return -1;
+ if (H5Sclose( m_sid ) < 0)
+ return -1;
+
+ return 0;
+
+ /* error zone */
out:
- H5E_BEGIN_TRY {
- H5Pclose(PRESERVE);
- H5Dclose(did);
- H5Sclose(file_space_id);
- H5Sclose(mem_space_id);
- H5Tclose(write_type_id);
- H5Tclose(tid);
- } H5E_END_TRY;
- return -1;
+ H5E_BEGIN_TRY
+ {
+ H5Pclose(preserve_id);
+ H5Dclose(did);
+ H5Sclose(file_space_id);
+ H5Sclose(m_sid);
+ H5Tclose(write_type_id);
+ H5Tclose(tid);
+ } H5E_END_TRY;
+ return -1;
}
@@ -821,56 +813,57 @@ herr_t H5TBread_table( hid_t loc_id,
const size_t *field_sizes,
void *dst_buf )
{
- hid_t did;
- hid_t ftype_id=-1;
- hid_t mem_type_id=-1;
- hid_t sid;
- hsize_t dims[1];
-
- /* open the dataset. */
- if((did = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
- return -1;
-
- /* get the dataspace handle */
- if((sid = H5Dget_space( did )) < 0)
- goto out;
-
- /* get dimensions */
- if(H5Sget_simple_extent_dims( sid, dims, NULL) < 0)
- goto out;
-
- /* get the datatypes */
- if ((ftype_id=H5Dget_type (did)) < 0)
- goto out;
-
- if ((mem_type_id=H5TB_create_type(loc_id,dset_name,type_size,field_offset,field_sizes,ftype_id)) < 0)
- goto out;
-
- /* read */
- if(H5Dread( did, mem_type_id, H5S_ALL, H5S_ALL, H5P_DEFAULT, dst_buf) < 0)
- goto out;
-
- /* close */
- if(H5Tclose( ftype_id ) < 0)
- goto out;
- if(H5Tclose( mem_type_id ) < 0)
- goto out;
- if(H5Sclose( sid ) < 0)
- goto out;
- if(H5Dclose( did ) < 0)
- return -1;
-
- return 0;
-
- /* error zone, gracefully close */
+ hid_t did;
+ hid_t ftype_id=-1;
+ hid_t mem_type_id=-1;
+ hid_t sid;
+ hsize_t dims[1];
+
+ /* open the dataset. */
+ if ((did = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
+ return -1;
+
+ /* get the dataspace handle */
+ if ((sid = H5Dget_space( did )) < 0)
+ goto out;
+
+ /* get dimensions */
+ if (H5Sget_simple_extent_dims( sid, dims, NULL) < 0)
+ goto out;
+
+ /* get the datatypes */
+ if ((ftype_id=H5Dget_type (did)) < 0)
+ goto out;
+
+ if ((mem_type_id=H5TB_create_type(loc_id,dset_name,type_size,field_offset,field_sizes,ftype_id)) < 0)
+ goto out;
+
+ /* read */
+ if (H5Dread( did, mem_type_id, H5S_ALL, H5S_ALL, H5P_DEFAULT, dst_buf) < 0)
+ goto out;
+
+ /* close */
+ if (H5Tclose( ftype_id ) < 0)
+ goto out;
+ if (H5Tclose( mem_type_id ) < 0)
+ goto out;
+ if (H5Sclose( sid ) < 0)
+ goto out;
+ if (H5Dclose( did ) < 0)
+ return -1;
+
+ return 0;
+
+ /* error zone */
out:
- H5E_BEGIN_TRY {
- H5Dclose(did);
- H5Tclose(mem_type_id);
- H5Tclose(ftype_id);
- H5Sclose(sid);
- } H5E_END_TRY;
- return -1;
+ H5E_BEGIN_TRY
+ {
+ H5Dclose(did);
+ H5Tclose(mem_type_id);
+ H5Tclose(ftype_id);
+ H5Sclose(sid);
+ } H5E_END_TRY;
+ return -1;
}
/*-------------------------------------------------------------------------
@@ -887,7 +880,7 @@ out:
* Comments:
*
* Modifications: April 1, 2004
- * the DST_SIZES parameter is used to define the memory type ID
+ * the FIELD_SIZES parameter is used to define the memory type ID
* returned by H5TB_create_type
*
*-------------------------------------------------------------------------
@@ -901,91 +894,57 @@ herr_t H5TBread_records( hid_t loc_id,
size_t type_size,
const size_t *field_offset,
const size_t *field_sizes,
- void *data )
+ void *buf )
{
-
- hid_t did;
- hid_t ftype_id;
- hid_t mem_type_id=-1;
- hsize_t count[1];
- hsize_t offset[1];
- hid_t sid=-1;
- hsize_t dims[1];
- hid_t mem_space_id=-1;
- hsize_t mem_size[1];
- hsize_t nrecords_orig;
- hsize_t nfields;
-
- /* get the number of records and fields */
- if(H5TBget_table_info ( loc_id, dset_name, &nfields, &nrecords_orig ) < 0)
- return -1;
-
- /* open the dataset */
- if((did = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
- return -1;
-
- /* get the datatypes */
- if((ftype_id = H5Dget_type( did )) < 0)
- goto out;
-
- if ((mem_type_id=H5TB_create_type(loc_id,dset_name,type_size,field_offset,field_sizes,ftype_id)) < 0)
- goto out;
-
- /* Read the records */
- if ((H5TB_common_read_records(did, mem_type_id, start, (size_t)nrecords, nrecords_orig, data)) < 0)
- goto out;
-
- /* get the dataspace handle */
- if((sid = H5Dget_space( did )) < 0)
- goto out;
-
- /* get records */
- if(H5Sget_simple_extent_dims( sid, dims, NULL) < 0)
- goto out;
-
- if(start + nrecords > dims[0] )
- goto out;
-
- /* define a hyperslab in the dataset of the size of the records */
- offset[0] = start;
- count[0] = nrecords;
- if(H5Sselect_hyperslab( sid, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
- goto out;
-
- /* create a memory dataspace handle */
- mem_size[0] = count[0];
- if((mem_space_id = H5Screate_simple( 1, mem_size, NULL )) < 0)
- goto out;
-
- /* read */
- if(H5Dread( did, mem_type_id, mem_space_id, sid, H5P_DEFAULT, data ) < 0)
- goto out;
-
- /* close */
- if(H5Sclose( mem_space_id ) < 0)
- goto out;
- if(H5Sclose( sid ) < 0)
- goto out;
- if(H5Tclose( ftype_id ) < 0)
- return -1;
- if(H5Tclose( mem_type_id ) < 0)
- return -1;
- if(H5Dclose( did ) < 0)
- return -1;
-
- return 0;
-
- /* error zone, gracefully close */
+
+ hid_t did;
+ hid_t ftype_id;
+ hid_t mem_type_id=-1;
+ hid_t sid=-1;
+ hid_t m_sid=-1;
+ hsize_t nrecords_orig;
+ hsize_t nfields;
+
+ /* get the number of records and fields */
+ if (H5TBget_table_info ( loc_id, dset_name, &nfields, &nrecords_orig ) < 0)
+ return -1;
+
+ /* open the dataset */
+ if ((did = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
+ return -1;
+
+ /* get the datatypes */
+ if ((ftype_id = H5Dget_type( did )) < 0)
+ goto out;
+
+ if ((mem_type_id=H5TB_create_type(loc_id,dset_name,type_size,field_offset,field_sizes,ftype_id)) < 0)
+ goto out;
+
+ /* read the records */
+ if ((H5TB_common_read_records(did, mem_type_id, start, (size_t)nrecords, nrecords_orig, buf)) < 0)
+ goto out;
+
+ /* close */
+ if (H5Tclose( ftype_id ) < 0)
+ return -1;
+ if (H5Tclose( mem_type_id ) < 0)
+ return -1;
+ if (H5Dclose( did ) < 0)
+ return -1;
+
+ return 0;
+
+ /* error zone */
out:
- H5E_BEGIN_TRY {
- H5Dclose(did);
- H5Tclose(mem_type_id);
- H5Tclose(ftype_id);
- H5Sclose(mem_space_id);
- H5Sclose(sid);
- } H5E_END_TRY;
- return -1;
-
+ H5E_BEGIN_TRY {
+ H5Dclose(did);
+ H5Tclose(mem_type_id);
+ H5Tclose(ftype_id);
+ H5Sclose(m_sid);
+ H5Sclose(sid);
+ } H5E_END_TRY;
+ return -1;
+
}
@@ -1003,7 +962,7 @@ out:
* Comments:
*
* Modifications: April 1, 2004
- * the DST_SIZES parameter is used to define the memory type ID
+ * the FIELD_SIZES parameter is used to define the memory type ID
* returned by H5TB_create_type
*
*-------------------------------------------------------------------------
@@ -1018,129 +977,130 @@ herr_t H5TBread_fields_name( hid_t loc_id,
size_t type_size,
const size_t *field_offset,
const size_t *field_sizes,
- void *data )
+ void *buf )
{
- hid_t did;
- hid_t ftype_id=-1;
- hid_t mem_type_id=-1;
- hid_t mtype_id;
- hid_t nmtype_id;
- char *member_name;
- hssize_t nfields;
- hsize_t count[1];
- hsize_t offset[1];
- hid_t sid=-1;
- hid_t mem_space_id=-1;
- hsize_t mem_size[1];
- size_t size_native;
- hssize_t i, j;
-
- /* open the dataset */
- if((did = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
- goto out;
-
- /* get the datatype */
- if((ftype_id = H5Dget_type( did )) < 0)
- goto out;
-
- /* get the number of fields */
- if(( nfields = H5Tget_nmembers( ftype_id )) < 0)
- goto out;
-
- /* create a memory read id */
- if(( mem_type_id = H5Tcreate( H5T_COMPOUND, type_size )) < 0)
- goto out;
-
- /* iterate tru the members */
- for ( i=0,j=0; i<nfields; i++)
- {
- /* get the member name */
- member_name = H5Tget_member_name( ftype_id, (unsigned)i );
-
- if(H5TB_find_field( member_name, field_names ) > 0 )
- {
- /* get the member type */
- if(( mtype_id = H5Tget_member_type( ftype_id, (unsigned) i )) < 0)
- goto out;
-
- /* convert to native type */
- if ((nmtype_id=H5Tget_native_type(mtype_id,H5T_DIR_DEFAULT)) < 0)
- goto out;
-
- size_native=H5Tget_size(nmtype_id);
-
- if (field_sizes[j]!=size_native)
- {
- if (H5Tset_size(nmtype_id, field_sizes[j]) < 0)
- goto out;
- }
- /* the field in the file is found by its name */
- if(field_offset )
- {
- if(H5Tinsert( mem_type_id, member_name, field_offset[j], nmtype_id ) < 0)
- goto out;
- }
- else
- {
- if(H5Tinsert( mem_type_id, member_name, (size_t)0, nmtype_id ) < 0)
- goto out;
- }
-
- /* close */
- if(H5Tclose( mtype_id ) < 0)
- goto out;
- if(H5Tclose( nmtype_id ) < 0)
- goto out;
- j++;
- }
- free( member_name );
- }
-
- /* get the dataspace handle */
- if((sid = H5Dget_space( did )) < 0)
- goto out;
-
- /* define a hyperslab in the dataset */
- offset[0] = start;
- count[0] = nrecords;
- if(H5Sselect_hyperslab( sid, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
- goto out;
-
- /* create a memory dataspace handle */
- mem_size[0] = count[0];
- if((mem_space_id = H5Screate_simple( 1, mem_size, NULL )) < 0)
- goto out;
-
- /* read */
- if(H5Dread( did, mem_type_id, mem_space_id, sid, H5P_DEFAULT, data ) < 0)
- goto out;
-
- /* close */
- if(H5Tclose( mem_type_id ) )
- goto out;
- if(H5Tclose( ftype_id ) < 0)
- return -1;
- if(H5Sclose( sid ) < 0)
- goto out;
- if(H5Sclose( mem_space_id ) < 0)
- goto out;
- if(H5Dclose( did ) < 0)
- return -1;
-
- return 0;
-
-/* error zone, gracefully close */
+ hid_t did;
+ hid_t ftype_id=-1;
+ hid_t mem_type_id=-1;
+ hid_t mtype_id;
+ hid_t nmtype_id;
+ char *member_name;
+ hssize_t nfields;
+ hsize_t count[1];
+ hsize_t offset[1];
+ hid_t sid=-1;
+ hid_t m_sid=-1;
+ hsize_t mem_size[1];
+ size_t size_native;
+ hssize_t i, j;
+
+ /* open the dataset */
+ if ((did = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
+ goto out;
+
+ /* get the datatype */
+ if ((ftype_id = H5Dget_type( did )) < 0)
+ goto out;
+
+ /* get the number of fields */
+ if (( nfields = H5Tget_nmembers( ftype_id )) < 0)
+ goto out;
+
+ /* create a memory read id */
+ if (( mem_type_id = H5Tcreate( H5T_COMPOUND, type_size )) < 0)
+ goto out;
+
+ /* iterate tru the members */
+ for ( i=0,j=0; i<nfields; i++)
+ {
+ /* get the member name */
+ member_name = H5Tget_member_name( ftype_id, (unsigned)i );
+
+ if(H5TB_find_field( member_name, field_names ) > 0 )
+ {
+ /* get the member type */
+ if (( mtype_id = H5Tget_member_type( ftype_id, (unsigned) i )) < 0)
+ goto out;
+
+ /* convert to native type */
+ if ((nmtype_id=H5Tget_native_type(mtype_id,H5T_DIR_DEFAULT)) < 0)
+ goto out;
+
+ size_native=H5Tget_size(nmtype_id);
+
+ if (field_sizes[j]!=size_native)
+ {
+ if (H5Tset_size(nmtype_id, field_sizes[j]) < 0)
+ goto out;
+ }
+ /* the field in the file is found by its name */
+ if(field_offset )
+ {
+ if(H5Tinsert( mem_type_id, member_name, field_offset[j], nmtype_id ) < 0)
+ goto out;
+ }
+ else
+ {
+ if(H5Tinsert( mem_type_id, member_name, (size_t)0, nmtype_id ) < 0)
+ goto out;
+ }
+
+ /* close */
+ if(H5Tclose( mtype_id ) < 0)
+ goto out;
+ if(H5Tclose( nmtype_id ) < 0)
+ goto out;
+ j++;
+ }
+ free( member_name );
+ }
+
+ /* get the dataspace handle */
+ if ((sid = H5Dget_space( did )) < 0)
+ goto out;
+
+ /* define a hyperslab in the dataset */
+ offset[0] = start;
+ count[0] = nrecords;
+ if (H5Sselect_hyperslab( sid, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
+ goto out;
+
+ /* create a memory dataspace handle */
+ mem_size[0] = count[0];
+ if ((m_sid = H5Screate_simple( 1, mem_size, NULL )) < 0)
+ goto out;
+
+ /* read */
+ if (H5Dread( did, mem_type_id, m_sid, sid, H5P_DEFAULT, buf ) < 0)
+ goto out;
+
+ /* close */
+ if (H5Tclose( mem_type_id ) )
+ goto out;
+ if (H5Tclose( ftype_id ) < 0)
+ return -1;
+ if (H5Sclose( sid ) < 0)
+ goto out;
+ if (H5Sclose( m_sid ) < 0)
+ goto out;
+ if (H5Dclose( did ) < 0)
+ return -1;
+
+ return 0;
+
+ /* error zone */
out:
- H5E_BEGIN_TRY {
- H5Dclose(did);
- H5Tclose(mem_type_id);
- H5Tclose(ftype_id);
- H5Sclose(mem_space_id);
- H5Sclose(sid);
- } H5E_END_TRY;
- return -1;
-
+ H5E_BEGIN_TRY
+ {
+ H5Dclose(did);
+ H5Tclose(mem_type_id);
+ H5Tclose(ftype_id);
+ H5Sclose(m_sid);
+ H5Sclose(sid);
+ } H5E_END_TRY;
+ return -1;
+
}
@@ -1158,7 +1118,7 @@ out:
* Comments:
*
* Modifications: April 1, 2004
- * the DST_SIZES parameter is used to define the memory type ID
+ * the FIELD_SIZES parameter is used to define the memory type ID
* returned by H5TB_create_type
*
*-------------------------------------------------------------------------
@@ -1174,136 +1134,129 @@ herr_t H5TBread_fields_index( hid_t loc_id,
size_t type_size,
const size_t *field_offset,
const size_t *field_sizes,
- void *data )
+ void *buf )
{
-
- hid_t did;
- hid_t tid=-1;
- hid_t read_type_id=-1;
- hid_t member_type_id;
- hid_t nmtype_id;
- char *member_name;
- hsize_t count[1];
- hsize_t offset[1];
- hid_t sid=-1;
- hid_t mem_space_id=-1;
- hsize_t mem_size[1];
- size_t size_native;
- hsize_t i, j;
-
- /* Open the dataset. */
- if((did = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
- goto out;
-
- /* Get the datatype */
- if((tid = H5Dget_type( did )) < 0)
- goto out;
-
- /* Create a read id */
- if(( read_type_id = H5Tcreate( H5T_COMPOUND, type_size )) < 0)
- goto out;
-
- /* Iterate tru the members */
- for ( i = 0; i < nfields; i++)
- {
- j = field_index[i];
-
- /* Get the member name */
- member_name = H5Tget_member_name( tid, (unsigned) j );
-
- /* Get the member type */
- if(( member_type_id = H5Tget_member_type( tid, (unsigned) j )) < 0)
- goto out;
-
- /* Get the member size */
- if(H5Tget_size( member_type_id ) == 0 )
- goto out;
-
- /* Convert to native type */
- if ((nmtype_id=H5Tget_native_type(member_type_id,H5T_DIR_DEFAULT)) < 0)
- goto out;
-
- size_native=H5Tget_size(nmtype_id);
-
- if (field_sizes[i]!=size_native)
- {
- if (H5Tset_size(nmtype_id, field_sizes[i]) < 0)
- goto out;
- }
-
- /* The field in the file is found by its name */
- if(field_offset )
- {
- if(H5Tinsert( read_type_id, member_name, field_offset[i], nmtype_id ) < 0)
- goto out;
- }
- else
- {
- if(H5Tinsert( read_type_id, member_name, (size_t)0, nmtype_id ) < 0)
- goto out;
- }
-
- /* Close the member type */
- if(H5Tclose( member_type_id ) < 0)
- goto out;
- if(H5Tclose( nmtype_id ) < 0)
- goto out;
-
- free( member_name );
- }
-
- /* Get the dataspace handle */
- if((sid = H5Dget_space( did )) < 0)
- goto out;
-
- /* Define a hyperslab in the dataset */
- offset[0] = start;
- count[0] = nrecords;
- if(H5Sselect_hyperslab( sid, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
- goto out;
-
- /* Create a memory dataspace handle */
- mem_size[0] = count[0];
- if((mem_space_id = H5Screate_simple( 1, mem_size, NULL )) < 0)
- goto out;
-
- /* Read */
- if(H5Dread( did, read_type_id, mem_space_id, sid, H5P_DEFAULT, data ) < 0)
- goto out;
-
- /* Terminate access to the dataspace */
- if(H5Sclose( sid ) < 0)
- goto out;
-
- /* Terminate access to the memory dataspace */
- if(H5Sclose( mem_space_id ) < 0)
- goto out;
-
- /* End access to the read id */
- if(H5Tclose( read_type_id ) )
- goto out;
-
- /* Release the datatype. */
- if(H5Tclose( tid ) < 0)
- return -1;
-
- /* End access to the dataset */
- if(H5Dclose( did ) < 0)
- return -1;
-
-return 0;
-
-/* error zone, gracefully close */
+
+ hid_t did;
+ hid_t tid=-1;
+ hid_t read_type_id=-1;
+ hid_t member_type_id;
+ hid_t nmtype_id;
+ char *member_name;
+ hsize_t count[1];
+ hsize_t offset[1];
+ hid_t sid=-1;
+ hid_t m_sid=-1;
+ hsize_t mem_size[1];
+ size_t size_native;
+ hsize_t i, j;
+
+ /* open the dataset. */
+ if ((did = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
+ goto out;
+
+ /* get the datatype */
+ if ((tid = H5Dget_type( did )) < 0)
+ goto out;
+
+ /* create a read id */
+ if (( read_type_id = H5Tcreate( H5T_COMPOUND, type_size )) < 0)
+ goto out;
+
+ /* iterate tru the members */
+ for ( i = 0; i < nfields; i++)
+ {
+ j = field_index[i];
+
+ /* get the member name */
+ member_name = H5Tget_member_name( tid, (unsigned) j );
+
+ /* get the member type */
+ if (( member_type_id = H5Tget_member_type( tid, (unsigned) j )) < 0)
+ goto out;
+
+ /* get the member size */
+ if (H5Tget_size( member_type_id ) == 0 )
+ goto out;
+
+ /* convert to native type */
+ if ((nmtype_id=H5Tget_native_type(member_type_id,H5T_DIR_DEFAULT)) < 0)
+ goto out;
+
+ size_native=H5Tget_size(nmtype_id);
+
+ if (field_sizes[i]!=size_native)
+ {
+ if (H5Tset_size(nmtype_id, field_sizes[i]) < 0)
+ goto out;
+ }
+
+ /* the field in the file is found by its name */
+ if (field_offset )
+ {
+ if(H5Tinsert( read_type_id, member_name, field_offset[i], nmtype_id ) < 0)
+ goto out;
+ }
+ else
+ {
+ if(H5Tinsert( read_type_id, member_name, (size_t)0, nmtype_id ) < 0)
+ goto out;
+ }
+
+ /* close the member type */
+ if (H5Tclose( member_type_id ) < 0)
+ goto out;
+ if (H5Tclose( nmtype_id ) < 0)
+ goto out;
+
+ free( member_name );
+ }
+
+ /* get the dataspace handle */
+ if ((sid = H5Dget_space( did )) < 0)
+ goto out;
+
+ /* define a hyperslab in the dataset */
+ offset[0] = start;
+ count[0] = nrecords;
+ if (H5Sselect_hyperslab( sid, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
+ goto out;
+
+ /* create a memory dataspace handle */
+ mem_size[0] = count[0];
+ if ((m_sid = H5Screate_simple( 1, mem_size, NULL )) < 0)
+ goto out;
+
+ /* read */
+ if (H5Dread( did, read_type_id, m_sid, sid, H5P_DEFAULT, buf ) < 0)
+ goto out;
+
+ /* close */
+ if (H5Sclose( sid ) < 0)
+ goto out;
+ if (H5Sclose( m_sid ) < 0)
+ goto out;
+ if (H5Tclose( read_type_id ) )
+ goto out;
+ if (H5Tclose( tid ) < 0)
+ return -1;
+ if (H5Dclose( did ) < 0)
+ return -1;
+
+ return 0;
+
+ /* error zone */
out:
- H5E_BEGIN_TRY {
- H5Dclose(did);
- H5Tclose(read_type_id);
- H5Tclose(tid);
- H5Sclose(mem_space_id);
- H5Sclose(sid);
- } H5E_END_TRY;
- return -1;
-
+ H5E_BEGIN_TRY
+ {
+ H5Dclose(did);
+ H5Tclose(read_type_id);
+ H5Tclose(tid);
+ H5Sclose(m_sid);
+ H5Sclose(sid);
+ } H5E_END_TRY;
+ return -1;
+
}
@@ -1336,141 +1289,122 @@ herr_t H5TBdelete_record( hid_t loc_id,
hsize_t start,
hsize_t nrecords )
{
-
- hsize_t nfields;
- hsize_t ntotal_records;
- hsize_t read_start;
- hsize_t read_nrecords;
- hid_t did;
- hid_t tid;
- hsize_t count[1];
- hsize_t offset[1];
- hid_t sid;
- hid_t mem_space_id;
- hsize_t mem_size[1];
- unsigned char *tmp_buf;
- size_t src_size;
- size_t *src_offset;
- size_t *src_sizes;
- hsize_t nrows;
- hsize_t dims[1];
-
-
-/*-------------------------------------------------------------------------
- * First we get information about type size and offsets on disk
- *-------------------------------------------------------------------------
- */
-
- /* Get the number of records and fields */
- if(H5TBget_table_info ( loc_id, dset_name, &nfields, &ntotal_records ) < 0)
- return -1;
-
- src_offset = (size_t *)malloc((size_t)nfields * sizeof(size_t));
- src_sizes = (size_t *)malloc((size_t)nfields * sizeof(size_t));
-
- if(src_offset == NULL )
- return -1;
-
- /* Get field info */
- if(H5TBget_field_info( loc_id, dset_name, NULL, src_sizes, src_offset, &src_size ) < 0)
- return -1;
-
-/*-------------------------------------------------------------------------
- * Read the records after the deleted one(s)
- *-------------------------------------------------------------------------
- */
-
- read_start = start + nrecords;
- read_nrecords = ntotal_records - read_start;
- tmp_buf = (unsigned char *)calloc((size_t) read_nrecords, src_size );
-
- if(tmp_buf == NULL )
- return -1;
-
- /* Read the records after the deleted one(s) */
- if(H5TBread_records( loc_id, dset_name, read_start, read_nrecords, src_size,
- src_offset, src_sizes, tmp_buf ) < 0)
- return -1;
-
-
-/*-------------------------------------------------------------------------
- * Write the records in another position
- *-------------------------------------------------------------------------
- */
-
- /* Open the dataset. */
- if((did = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
- return -1;
-
- /* Get the datatype */
- if((tid = H5Dget_type( did )) < 0)
- goto out;
-
- /* Get the dataspace handle */
- if((sid = H5Dget_space( did )) < 0)
- goto out;
-
- /* Define a hyperslab in the dataset of the size of the records */
- offset[0] = start;
- count[0] = read_nrecords;
- if(H5Sselect_hyperslab( sid, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
- goto out;
-
- /* Create a memory dataspace handle */
- mem_size[0] = count[0];
- if((mem_space_id = H5Screate_simple( 1, mem_size, NULL )) < 0)
- goto out;
-
- if(H5Dwrite( did, tid, mem_space_id, sid, H5P_DEFAULT, tmp_buf ) < 0)
- goto out;
-
- /* Terminate access to the memory dataspace */
- if(H5Sclose( mem_space_id ) < 0)
- goto out;
-
- /* Terminate access to the dataspace */
- if(H5Sclose( sid ) < 0)
- goto out;
-
- /* Release the datatype. */
- if(H5Tclose( tid ) < 0)
- goto out;
-
-
-/*-------------------------------------------------------------------------
- * Change the table dimension
- *-------------------------------------------------------------------------
- */
- dims[0] = ntotal_records - nrecords;
- if(H5Dset_extent( did, dims ) < 0)
- goto out;
-
- /* End access to the dataset */
- if(H5Dclose( did ) < 0)
- return -1;
-
- free( tmp_buf );
- free( src_offset );
- free( src_sizes );
-
-
-/*-------------------------------------------------------------------------
- * Store the new dimension as an attribute
- *-------------------------------------------------------------------------
- */
-
- nrows = ntotal_records - nrecords;
- /* Set the attribute */
- if (H5LT_set_attribute_numerical(loc_id,dset_name,"NROWS",(size_t)1,
- H5T_NATIVE_LLONG,&nrows) < 0)
- return -1;
-
-
- return 0;
-
+
+ hsize_t nfields;
+ hsize_t ntotal_records;
+ hsize_t read_start;
+ hsize_t read_nrecords;
+ hid_t did;
+ hid_t tid;
+ hsize_t count[1];
+ hsize_t offset[1];
+ hid_t sid;
+ hid_t m_sid;
+ hsize_t mem_size[1];
+ unsigned char *tmp_buf;
+ size_t src_size;
+ size_t *src_offset;
+ size_t *src_sizes;
+ hsize_t dims[1];
+
+
+ /*-------------------------------------------------------------------------
+ * first we get information about type size and offsets on disk
+ *-------------------------------------------------------------------------
+ */
+
+ /* get the number of records and fields */
+ if (H5TBget_table_info ( loc_id, dset_name, &nfields, &ntotal_records ) < 0)
+ return -1;
+
+ src_offset = (size_t *)malloc((size_t)nfields * sizeof(size_t));
+ src_sizes = (size_t *)malloc((size_t)nfields * sizeof(size_t));
+
+ if (src_offset == NULL )
+ return -1;
+
+ /* get field info */
+ if (H5TBget_field_info( loc_id, dset_name, NULL, src_sizes, src_offset, &src_size ) < 0)
+ return -1;
+
+ /*-------------------------------------------------------------------------
+ * read the records after the deleted one(s)
+ *-------------------------------------------------------------------------
+ */
+
+ read_start = start + nrecords;
+ read_nrecords = ntotal_records - read_start;
+ tmp_buf = (unsigned char *)calloc((size_t) read_nrecords, src_size );
+
+ if (tmp_buf == NULL )
+ return -1;
+
+ /* read the records after the deleted one(s) */
+ if (H5TBread_records( loc_id, dset_name, read_start, read_nrecords, src_size, src_offset, src_sizes, tmp_buf ) < 0)
+ return -1;
+
+ /*-------------------------------------------------------------------------
+ * write the records in another position
+ *-------------------------------------------------------------------------
+ */
+
+ /* open the dataset. */
+ if ((did = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
+ return -1;
+
+ /* get the datatype */
+ if ((tid = H5Dget_type( did )) < 0)
+ goto out;
+
+ /* get the dataspace handle */
+ if ((sid = H5Dget_space( did )) < 0)
+ goto out;
+
+ /* define a hyperslab in the dataset of the size of the records */
+ offset[0] = start;
+ count[0] = read_nrecords;
+ if (H5Sselect_hyperslab( sid, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
+ goto out;
+
+ /* create a memory dataspace handle */
+ mem_size[0] = count[0];
+ if ((m_sid = H5Screate_simple( 1, mem_size, NULL )) < 0)
+ goto out;
+
+ if (H5Dwrite( did, tid, m_sid, sid, H5P_DEFAULT, tmp_buf ) < 0)
+ goto out;
+
+ /* close */
+ if (H5Sclose( m_sid ) < 0)
+ goto out;
+ if (H5Sclose( sid ) < 0)
+ goto out;
+ if (H5Tclose( tid ) < 0)
+ goto out;
+
+
+ /*-------------------------------------------------------------------------
+ * change the dataset dimension
+ *-------------------------------------------------------------------------
+ */
+ dims[0] = ntotal_records - nrecords;
+ if (H5Dset_extent( did, dims ) < 0)
+ goto out;
+
+ /* close dataset */
+ if (H5Dclose( did ) < 0)
+ return -1;
+
+ free( tmp_buf );
+ free( src_offset );
+ free( src_sizes );
+
+
+ return 0;
+
out:
- H5Dclose( did );
- return -1;
+ H5Dclose( did );
+ return -1;
}
/*-------------------------------------------------------------------------
@@ -1487,7 +1421,7 @@ out:
* Comments: Uses memory offsets
*
* Modifications: April 1, 2004
- * the DST_SIZES parameter is used to define the memory type ID
+ * the FIELD_SIZES parameter is used to define the memory type ID
* returned by H5TB_create_type
*
*-------------------------------------------------------------------------
@@ -1501,143 +1435,136 @@ herr_t H5TBinsert_record( hid_t loc_id,
size_t type_size,
const size_t *field_offset,
const size_t *field_sizes,
- void *data )
+ void *buf )
{
-
- hsize_t nfields;
- hsize_t ntotal_records;
- hsize_t read_nrecords;
- hid_t did;
- hid_t tid=-1;
- hid_t mem_type_id=-1;
- hsize_t count[1];
- hsize_t offset[1];
- hid_t sid=-1;
- hid_t mem_space_id=-1;
- hsize_t dims[1];
- hsize_t mem_dims[1];
- unsigned char *tmp_buf;
-
-/*-------------------------------------------------------------------------
- * Read the records after the inserted one(s)
- *-------------------------------------------------------------------------
- */
-
- /* Get the dimensions */
- if(H5TBget_table_info ( loc_id, dset_name, &nfields, &ntotal_records ) < 0)
- return -1;
-
- /* Open the dataset. */
- if((did = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
- goto out;
-
- /* Get the datatype */
- if((tid = H5Dget_type( did )) < 0)
- goto out;
-
- /* Create the memory data type. */
- if ((mem_type_id=H5TB_create_type(loc_id,dset_name,type_size,field_offset,field_sizes,tid)) < 0)
- goto out;
-
- read_nrecords = ntotal_records - start;
- tmp_buf = (unsigned char *)calloc((size_t) read_nrecords, type_size);
-
- /* Read the records after the inserted one(s) */
- if(H5TBread_records( loc_id, dset_name, start, read_nrecords, type_size, field_offset,
- field_sizes, tmp_buf ) < 0)
- return -1;
-
- /* Extend the dataset */
- dims[0] = ntotal_records + nrecords;
-
- if(H5Dset_extent(did, dims) < 0)
- goto out;
-
-/*-------------------------------------------------------------------------
- * Write the inserted records
- *-------------------------------------------------------------------------
- */
-
- /* Create a simple memory data space */
- mem_dims[0] = nrecords;
- if((mem_space_id = H5Screate_simple(1, mem_dims, NULL)) < 0)
- return -1;
-
- /* Get the file data space */
- if((sid = H5Dget_space( did )) < 0)
- return -1;
-
- /* Define a hyperslab in the dataset to write the new data */
- offset[0] = start;
- count[0] = nrecords;
- if(H5Sselect_hyperslab( sid, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
- goto out;
-
- if(H5Dwrite( did, mem_type_id, mem_space_id, sid, H5P_DEFAULT, data ) < 0)
- goto out;
-
- /* Terminate access to the dataspace */
- if(H5Sclose( mem_space_id ) < 0)
- goto out;
- if(H5Sclose( sid ) < 0)
- goto out;
-
-/*-------------------------------------------------------------------------
- * Write the "pushed down" records
- *-------------------------------------------------------------------------
- */
-
- /* Create a simple memory data space */
- mem_dims[0]=read_nrecords;
- if((mem_space_id = H5Screate_simple( 1, mem_dims, NULL )) < 0)
- return -1;
-
- /* Get the file data space */
- if((sid = H5Dget_space( did )) < 0)
- return -1;
-
- /* Define a hyperslab in the dataset to write the new data */
- offset[0] = start + nrecords;
- count[0] = read_nrecords;
- if(H5Sselect_hyperslab( sid, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
- goto out;
-
- if(H5Dwrite( did, mem_type_id, mem_space_id, sid, H5P_DEFAULT, tmp_buf ) < 0)
- goto out;
-
- /* Terminate access to the dataspace */
- if(H5Sclose( mem_space_id ) < 0)
- goto out;
-
- if(H5Sclose( sid ) < 0)
- goto out;
-
- /* Release the datatype. */
- if(H5Tclose( tid ) < 0)
- return -1;
-
- /* Release the datatype. */
- if(H5Tclose( mem_type_id ) < 0)
- return -1;
-
- /* End access to the dataset */
- if(H5Dclose( did ) < 0)
- return -1;
-
- free( tmp_buf );
-
- return 0;
-
- /* error zone, gracefully close */
+
+ hsize_t nfields;
+ hsize_t ntotal_records;
+ hsize_t read_nrecords;
+ hid_t did;
+ hid_t tid=-1;
+ hid_t mem_type_id=-1;
+ hsize_t count[1];
+ hsize_t offset[1];
+ hid_t sid=-1;
+ hid_t m_sid=-1;
+ hsize_t dims[1];
+ hsize_t mem_dims[1];
+ unsigned char *tmp_buf;
+
+ /*-------------------------------------------------------------------------
+ * read the records after the inserted one(s)
+ *-------------------------------------------------------------------------
+ */
+
+ /* get the dimensions */
+ if (H5TBget_table_info ( loc_id, dset_name, &nfields, &ntotal_records ) < 0)
+ return -1;
+
+ /* open the dataset. */
+ if ((did = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
+ goto out;
+
+ /* get the datatype */
+ if ((tid = H5Dget_type( did )) < 0)
+ goto out;
+
+ /* create the memory data type. */
+ if ((mem_type_id=H5TB_create_type(loc_id,dset_name,type_size,field_offset,field_sizes,tid)) < 0)
+ goto out;
+
+ read_nrecords = ntotal_records - start;
+ tmp_buf = (unsigned char *)calloc((size_t) read_nrecords, type_size);
+
+ /* read the records after the inserted one(s) */
+ if (H5TBread_records( loc_id, dset_name, start, read_nrecords, type_size, field_offset, field_sizes, tmp_buf ) < 0)
+ return -1;
+
+ /* extend the dataset */
+ dims[0] = ntotal_records + nrecords;
+
+ if (H5Dset_extent(did, dims) < 0)
+ goto out;
+
+ /*-------------------------------------------------------------------------
+ * write the inserted records
+ *-------------------------------------------------------------------------
+ */
+
+ /* create a simple memory data space */
+ mem_dims[0] = nrecords;
+ if ((m_sid = H5Screate_simple(1, mem_dims, NULL)) < 0)
+ return -1;
+
+ /* get the file data space */
+ if ((sid = H5Dget_space( did )) < 0)
+ return -1;
+
+ /* define a hyperslab in the dataset to write the new data */
+ offset[0] = start;
+ count[0] = nrecords;
+ if (H5Sselect_hyperslab( sid, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
+ goto out;
+
+ if (H5Dwrite( did, mem_type_id, m_sid, sid, H5P_DEFAULT, buf ) < 0)
+ goto out;
+
+ /* terminate access to the dataspace */
+ if (H5Sclose( m_sid ) < 0)
+ goto out;
+ if (H5Sclose( sid ) < 0)
+ goto out;
+
+ /*-------------------------------------------------------------------------
+ * write the "pushed down" records
+ *-------------------------------------------------------------------------
+ */
+
+ /* create a simple memory data space */
+ mem_dims[0]=read_nrecords;
+ if ((m_sid = H5Screate_simple( 1, mem_dims, NULL )) < 0)
+ return -1;
+
+ /* get the file data space */
+ if ((sid = H5Dget_space( did )) < 0)
+ return -1;
+
+ /* define a hyperslab in the dataset to write the new data */
+ offset[0] = start + nrecords;
+ count[0] = read_nrecords;
+ if (H5Sselect_hyperslab( sid, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
+ goto out;
+
+ if (H5Dwrite( did, mem_type_id, m_sid, sid, H5P_DEFAULT, tmp_buf ) < 0)
+ goto out;
+
+ /* close */
+ if (H5Sclose( m_sid ) < 0)
+ goto out;
+ if (H5Sclose( sid ) < 0)
+ goto out;
+ if (H5Tclose( tid ) < 0)
+ return -1;
+ if (H5Tclose( mem_type_id ) < 0)
+ return -1;
+ if (H5Dclose( did ) < 0)
+ return -1;
+
+ free( tmp_buf );
+
+ return 0;
+
+ /* error zone */
out:
- H5E_BEGIN_TRY {
- H5Dclose(did);
- H5Sclose(sid);
- H5Sclose(mem_space_id);
- H5Tclose(mem_type_id);
- H5Tclose(tid);
- } H5E_END_TRY;
- return -1;
+ H5E_BEGIN_TRY
+ {
+ H5Dclose(did);
+ H5Sclose(sid);
+ H5Sclose(m_sid);
+ H5Tclose(mem_type_id);
+ H5Tclose(tid);
+ } H5E_END_TRY;
+ return -1;
}
/*-------------------------------------------------------------------------
@@ -1666,124 +1593,115 @@ herr_t H5TBadd_records_from( hid_t loc_id,
const char *dset_name2,
hsize_t start2 )
{
-
- /* Identifiers for the 1st dataset. */
- hid_t dataset_id1;
- hid_t type_id1;
- hid_t space_id1=-1;
- hid_t mem_space_id1=-1;
- size_t type_size1;
-
- hsize_t count[1];
- hsize_t offset[1];
- hsize_t mem_size[1];
- hsize_t nfields;
- hsize_t ntotal_records;
- unsigned char *tmp_buf;
- size_t src_size;
- size_t *src_offset;
- size_t *src_sizes;
-
-/*-------------------------------------------------------------------------
- * First we get information about type size and offsets on disk
- *-------------------------------------------------------------------------
- */
-
- /* Get the number of records and fields */
- if(H5TBget_table_info ( loc_id, dset_name1, &nfields, &ntotal_records ) < 0)
- return -1;
-
- src_offset = (size_t *)malloc((size_t)nfields * sizeof(size_t));
- src_sizes = (size_t *)malloc((size_t)nfields * sizeof(size_t));
-
- if(src_offset == NULL )
- return -1;
-
- /* Get field info */
- if(H5TBget_field_info( loc_id, dset_name1, NULL, src_sizes, src_offset, &src_size ) < 0)
- return -1;
-
-/*-------------------------------------------------------------------------
- * Get information about the first table and read it
- *-------------------------------------------------------------------------
- */
-
- /* Open the 1st dataset. */
- if((dataset_id1 = H5Dopen2(loc_id, dset_name1, H5P_DEFAULT)) < 0)
- return -1;
-
- /* Get the datatype */
- if((type_id1 = H5Dget_type( dataset_id1 )) < 0)
- goto out;
-
- /* Get the dataspace handle */
- if((space_id1 = H5Dget_space( dataset_id1 )) < 0)
- goto out;
-
- /* Get the size of the datatype */
- if(( type_size1 = H5Tget_size( type_id1 )) == 0 )
- goto out;
-
- tmp_buf = (unsigned char *)calloc((size_t)nrecords, type_size1 );
-
- /* Define a hyperslab in the dataset of the size of the records */
- offset[0] = start1;
- count[0] = nrecords;
- if(H5Sselect_hyperslab( space_id1, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
- goto out;
-
- /* Create a memory dataspace handle */
- mem_size[0] = count[0];
- if((mem_space_id1 = H5Screate_simple( 1, mem_size, NULL )) < 0)
- goto out;
-
- if(H5Dread( dataset_id1, type_id1, mem_space_id1, space_id1, H5P_DEFAULT, tmp_buf ) < 0)
- goto out;
-
-/*-------------------------------------------------------------------------
- * Add to the second table
- *-------------------------------------------------------------------------
- */
- if(H5TBinsert_record(loc_id,dset_name2,start2,nrecords,src_size,src_offset,src_sizes,tmp_buf ) < 0)
- goto out;
-
-/*-------------------------------------------------------------------------
- * Close resources for table 1
- *-------------------------------------------------------------------------
- */
-
- /* Terminate access to the memory dataspace */
- if(H5Sclose( mem_space_id1 ) < 0)
- goto out;
-
- /* Terminate access to the dataspace */
- if(H5Sclose( space_id1 ) < 0)
- goto out;
-
- /* Release the datatype. */
- if(H5Tclose( type_id1 ) < 0)
- return -1;
-
- /* End access to the dataset */
- if(H5Dclose( dataset_id1 ) < 0)
- return -1;
-
- free( tmp_buf );
- free( src_offset );
- free( src_sizes );
-
-return 0;
-
- /* error zone, gracefully close */
+ hid_t did_1;
+ hid_t tid_1;
+ hid_t sid_1=-1;
+ hid_t msid_1=-1;
+ size_t type_size1;
+ hsize_t count[1];
+ hsize_t offset[1];
+ hsize_t mem_size[1];
+ hsize_t nfields;
+ hsize_t ntotal_records;
+ unsigned char *tmp_buf;
+ size_t src_size;
+ size_t *src_offset;
+ size_t *src_sizes;
+
+ /*-------------------------------------------------------------------------
+ * first we get information about type size and offsets on disk
+ *-------------------------------------------------------------------------
+ */
+
+ /* get the number of records and fields */
+ if (H5TBget_table_info ( loc_id, dset_name1, &nfields, &ntotal_records ) < 0)
+ return -1;
+
+ src_offset = (size_t *)malloc((size_t)nfields * sizeof(size_t));
+ src_sizes = (size_t *)malloc((size_t)nfields * sizeof(size_t));
+
+ if (src_offset == NULL )
+ return -1;
+
+ /* get field info */
+ if (H5TBget_field_info( loc_id, dset_name1, NULL, src_sizes, src_offset, &src_size ) < 0)
+ return -1;
+
+ /*-------------------------------------------------------------------------
+ * Get information about the first table and read it
+ *-------------------------------------------------------------------------
+ */
+
+ /* open the 1st dataset. */
+ if ((did_1 = H5Dopen2(loc_id, dset_name1, H5P_DEFAULT)) < 0)
+ return -1;
+
+ /* get the datatype */
+ if ((tid_1 = H5Dget_type( did_1 )) < 0)
+ goto out;
+
+ /* get the dataspace handle */
+ if ((sid_1 = H5Dget_space( did_1 )) < 0)
+ goto out;
+
+ /* get the size of the datatype */
+ if (( type_size1 = H5Tget_size( tid_1 )) == 0 )
+ goto out;
+
+ tmp_buf = (unsigned char *)calloc((size_t)nrecords, type_size1 );
+
+ /* define a hyperslab in the dataset of the size of the records */
+ offset[0] = start1;
+ count[0] = nrecords;
+ if (H5Sselect_hyperslab( sid_1, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
+ goto out;
+
+ /* create a memory dataspace handle */
+ mem_size[0] = count[0];
+ if ((msid_1 = H5Screate_simple( 1, mem_size, NULL )) < 0)
+ goto out;
+
+ if (H5Dread( did_1, tid_1, msid_1, sid_1, H5P_DEFAULT, tmp_buf ) < 0)
+ goto out;
+
+ /*-------------------------------------------------------------------------
+ * add to the second table
+ *-------------------------------------------------------------------------
+ */
+ if (H5TBinsert_record(loc_id,dset_name2,start2,nrecords,src_size,src_offset,src_sizes,tmp_buf ) < 0)
+ goto out;
+
+ /*-------------------------------------------------------------------------
+ * close resources for table 1
+ *-------------------------------------------------------------------------
+ */
+
+ if (H5Sclose( msid_1 ) < 0)
+ goto out;
+ if (H5Sclose( sid_1 ) < 0)
+ goto out;
+ if (H5Tclose( tid_1 ) < 0)
+ return -1;
+ if (H5Dclose( did_1 ) < 0)
+ return -1;
+
+ free( tmp_buf );
+ free( src_offset );
+ free( src_sizes );
+
+ return 0;
+
+ /* error zone */
out:
- H5E_BEGIN_TRY {
- H5Dclose(dataset_id1);
- H5Sclose(space_id1);
- H5Sclose(mem_space_id1);
- H5Tclose(type_id1);
- } H5E_END_TRY;
- return -1;
-
+ H5E_BEGIN_TRY
+ {
+ H5Dclose(did_1);
+ H5Sclose(sid_1);
+ H5Sclose(msid_1);
+ H5Tclose(tid_1);
+ } H5E_END_TRY;
+ return -1;
+
}
/*-------------------------------------------------------------------------
@@ -1810,363 +1728,344 @@ herr_t H5TBcombine_tables( hid_t loc_id1,
const char *dset_name2,
const char *dset_name3 )
{
-
- /* Identifiers for the 1st dataset. */
- hid_t dataset_id1;
- hid_t type_id1;
- hid_t space_id1;
- hid_t plist_id1;
-
- /* Identifiers for the 2nd dataset. */
- hid_t dataset_id2;
- hid_t type_id2;
- hid_t space_id2;
- hid_t plist_id2;
-
- /* Identifiers for the 3rd dataset. */
- hid_t dataset_id3;
- hid_t type_id3;
- hid_t space_id3;
- hid_t plist_id3;
-
- hsize_t count[1];
- hsize_t offset[1];
- hid_t mem_space_id;
- hsize_t mem_size[1];
- hsize_t nfields;
- hsize_t nrecords;
- hsize_t dims[1];
- hsize_t maxdims[1] = { H5S_UNLIMITED };
-
-
- size_t type_size;
- hid_t sid;
- hid_t member_type_id;
- size_t member_offset;
- char attr_name[255];
- hid_t attr_id;
- char aux[255];
- unsigned char *tmp_buf;
- unsigned char *tmp_fill_buf;
- hsize_t i;
- size_t src_size;
- size_t *src_offset;
- size_t *src_sizes;
- int has_fill=0;
-
-/*-------------------------------------------------------------------------
- * First we get information about type size and offsets on disk
- *-------------------------------------------------------------------------
- */
-
- /* Get the number of records and fields */
- if(H5TBget_table_info ( loc_id1, dset_name1, &nfields, &nrecords ) < 0)
- return -1;
-
- src_offset = (size_t *)malloc((size_t)nfields * sizeof(size_t));
- src_sizes = (size_t *)malloc((size_t)nfields * sizeof(size_t));
-
-
- if(src_offset == NULL )
- return -1;
-
- /* Get field info */
- if(H5TBget_field_info( loc_id1, dset_name1, NULL, src_sizes, src_offset, &src_size ) < 0)
- return -1;
-
-/*-------------------------------------------------------------------------
- * Get information about the first table
- *-------------------------------------------------------------------------
- */
-
- /* Open the 1st dataset. */
- if((dataset_id1 = H5Dopen2(loc_id1, dset_name1, H5P_DEFAULT)) < 0)
- goto out;
-
- /* Get the datatype */
- if((type_id1 = H5Dget_type( dataset_id1 )) < 0)
- goto out;
-
- /* Get the dataspace handle */
- if((space_id1 = H5Dget_space( dataset_id1 )) < 0)
- goto out;
-
- /* Get creation properties list */
- if((plist_id1 = H5Dget_create_plist( dataset_id1 )) < 0)
- goto out;
-
- /* Get the dimensions */
- if(H5TBget_table_info ( loc_id1, dset_name1, &nfields, &nrecords ) < 0)
- return -1;
-
-/*-------------------------------------------------------------------------
- * Make the merged table with no data originally
- *-------------------------------------------------------------------------
- */
-
- /* Clone the property list */
- if((plist_id3 = H5Pcopy(plist_id1)) < 0)
- goto out;
-
- /* Clone the type id */
- if((type_id3 = H5Tcopy(type_id1)) < 0)
- goto out;
-
-/*-------------------------------------------------------------------------
- * Here we do not clone the file space from the 1st dataset, because we want to create
- * an empty table. Instead we create a new dataspace with zero records and expandable.
- *-------------------------------------------------------------------------
- */
- dims[0] = 0;
-
-/* Create a simple data space with unlimited size */
- if((space_id3 = H5Screate_simple(1, dims, maxdims)) < 0)
- return -1;
-
- /* Create the dataset */
- if((dataset_id3 = H5Dcreate2(loc_id1, dset_name3, type_id3, space_id3, H5P_DEFAULT, plist_id3, H5P_DEFAULT)) < 0)
- goto out;
-
-/*-------------------------------------------------------------------------
- * Attach the conforming table attributes
- *-------------------------------------------------------------------------
- */
- if(H5TB_attach_attributes("Merge table", loc_id1, dset_name3, nfields, type_id3) < 0)
- goto out;
-
-/*-------------------------------------------------------------------------
- * Get attributes
- *-------------------------------------------------------------------------
- */
-
- type_size = H5Tget_size(type_id3);
-
- /* alloc fill value attribute buffer */
- tmp_fill_buf = (unsigned char *)malloc(type_size);
-
- /* Get the fill value attributes */
- has_fill = H5TBAget_fill(loc_id1, dset_name1, dataset_id1, tmp_fill_buf);
-
-/*-------------------------------------------------------------------------
- * Attach the fill attributes from previous table
- *-------------------------------------------------------------------------
- */
- if(has_fill == 1 )
- {
-
- if (( sid = H5Screate(H5S_SCALAR)) < 0)
- goto out;
-
- for ( i = 0; i < nfields; i++)
- {
-
- /* Get the member type */
- if(( member_type_id = H5Tget_member_type( type_id3, (unsigned) i )) < 0)
- goto out;
-
- /* Get the member offset */
- member_offset = H5Tget_member_offset(type_id3, (unsigned)i);
-
- strcpy(attr_name, "FIELD_");
- sprintf(aux, "%d", (int)i);
- strcat(attr_name, aux);
- sprintf(aux, "%s", "_FILL");
- strcat(attr_name, aux);
-
- if((attr_id = H5Acreate2(dataset_id3, attr_name, member_type_id, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
-
- if(H5Awrite(attr_id, member_type_id, tmp_fill_buf+member_offset) < 0)
- goto out;
-
- if(H5Aclose(attr_id) < 0)
- goto out;
-
- if(H5Tclose(member_type_id) < 0)
- goto out;
- }
-
- /* Close data space. */
- if(H5Sclose( sid ) < 0)
- goto out;
- }
-
-/*-------------------------------------------------------------------------
- * Read data from 1st table
- *-------------------------------------------------------------------------
- */
-
- tmp_buf = (unsigned char *)calloc((size_t) nrecords, type_size );
-
- /* Define a hyperslab in the dataset of the size of the records */
- offset[0] = 0;
- count[0] = nrecords;
- if(H5Sselect_hyperslab( space_id1, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
- goto out;
-
- /* Create a memory dataspace handle */
- mem_size[0] = count[0];
- if((mem_space_id = H5Screate_simple( 1, mem_size, NULL )) < 0)
- goto out;
-
- if(H5Dread( dataset_id1, type_id1, mem_space_id, space_id1, H5P_DEFAULT, tmp_buf ) < 0)
- goto out;
-
-/*-------------------------------------------------------------------------
- * Save data from 1st table into new table
- *-------------------------------------------------------------------------
- */
-
- /* Append the records to the new table */
- if(H5TBappend_records( loc_id1, dset_name3, nrecords, src_size, src_offset, src_sizes, tmp_buf ) < 0)
- goto out;
-
-/*-------------------------------------------------------------------------
- * Release resources from 1st table
- *-------------------------------------------------------------------------
- */
-
- /* Terminate access to the memory dataspace */
- if(H5Sclose( mem_space_id ) < 0)
- goto out;
-
- /* Terminate access to the dataspace */
- if(H5Sclose( space_id1 ) < 0)
- goto out;
-
- /* Release the datatype. */
- if(H5Tclose( type_id1 ) < 0)
- goto out;
-
- /* Terminate access to a property list */
- if(H5Pclose( plist_id1 ) < 0)
- goto out;
-
- /* End access to the dataset */
- if(H5Dclose( dataset_id1 ) < 0)
- goto out;
-
- /* Release resources. */
- free( tmp_buf );
-
-/*-------------------------------------------------------------------------
- * Get information about the 2nd table
- *-------------------------------------------------------------------------
- */
-
- /* Open the dataset. */
- if((dataset_id2 = H5Dopen2(loc_id2, dset_name2, H5P_DEFAULT)) < 0)
- goto out;
-
- /* Get the datatype */
- if((type_id2 = H5Dget_type( dataset_id2 )) < 0)
- goto out;
-
- /* Get the dataspace handle */
- if((space_id2 = H5Dget_space( dataset_id2 )) < 0)
- goto out;
-
- /* Get the property list handle */
- if((plist_id2 = H5Dget_create_plist( dataset_id2 )) < 0)
- goto out;
-
- /* Get the dimensions */
- if(H5TBget_table_info ( loc_id2, dset_name2, &nfields, &nrecords ) < 0)
- return -1;
-
-/*-------------------------------------------------------------------------
- * Read data from 2nd table
- *-------------------------------------------------------------------------
- */
-
- tmp_buf = (unsigned char *)calloc((size_t) nrecords, type_size );
-
- /* Define a hyperslab in the dataset of the size of the records */
- offset[0] = 0;
- count[0] = nrecords;
- if(H5Sselect_hyperslab( space_id2, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
- goto out;
-
- /* Create a memory dataspace handle */
- mem_size[0] = count[0];
- if((mem_space_id = H5Screate_simple( 1, mem_size, NULL )) < 0)
- goto out;
-
- if(H5Dread( dataset_id2, type_id2, mem_space_id, space_id2, H5P_DEFAULT, tmp_buf ) < 0)
- goto out;
-
-
-/*-------------------------------------------------------------------------
- * Save data from 2nd table into new table
- *-------------------------------------------------------------------------
- */
-
- /* append the records to the new table */
- if(H5TBappend_records( loc_id1, dset_name3, nrecords, src_size, src_offset, src_sizes, tmp_buf ) < 0)
- goto out;
-
-/*-------------------------------------------------------------------------
- * Release resources from 2nd table
- *-------------------------------------------------------------------------
- */
-
- /* Terminate access to the memory dataspace */
- if(H5Sclose( mem_space_id ) < 0)
- goto out;
-
- /* Terminate access to the dataspace */
- if(H5Sclose( space_id2 ) < 0)
- goto out;
-
- /* Release the datatype. */
- if(H5Tclose( type_id2 ) < 0)
- return -1;
-
- /* Terminate access to a property list */
- if(H5Pclose( plist_id2 ) < 0)
- goto out;
-
- /* End access to the dataset */
- if(H5Dclose( dataset_id2 ) < 0)
- return -1;
-
-/*-------------------------------------------------------------------------
- * Release resources from 3rd table
- *-------------------------------------------------------------------------
- */
-
- /* Terminate access to the dataspace */
- if(H5Sclose( space_id3 ) < 0)
- return -1;
-
- /* Release the datatype. */
- if(H5Tclose( type_id3 ) < 0)
- return -1;
-
- /* Terminate access to a property list */
- if(H5Pclose( plist_id3 ) < 0)
- return -1;
-
- /* End access to the dataset */
- if(H5Dclose( dataset_id3 ) < 0)
- return -1;
-
- /* Release resources. */
- free( tmp_buf );
- free( tmp_fill_buf );
- free( src_offset );
- free( src_sizes );
-
-return 0;
-
+
+ /* identifiers for the 1st dataset. */
+ hid_t did_1=-1;
+ hid_t tid_1=-1;
+ hid_t sid_1=-1;
+ hid_t pid_1=-1;
+ /* identifiers for the 2nd dataset. */
+ hid_t did_2=-1;
+ hid_t tid_2=-1;
+ hid_t sid_2=-1;
+ hid_t pid_2=-1;
+ /* identifiers for the 3rd dataset. */
+ hid_t did_3=-1;
+ hid_t tid_3=-1;
+ hid_t sid_3=-1;
+ hid_t pid_3=-1;
+ hsize_t count[1];
+ hsize_t offset[1];
+ hid_t m_sid;
+ hsize_t mem_size[1];
+ hsize_t nfields;
+ hsize_t nrecords;
+ hsize_t dims[1];
+ hsize_t maxdims[1] = { H5S_UNLIMITED };
+ size_t type_size;
+ hid_t sid;
+ hid_t member_type_id;
+ size_t member_offset;
+ char attr_name[255];
+ hid_t attr_id;
+ char aux[255];
+ unsigned char *tmp_buf;
+ unsigned char *tmp_fill_buf;
+ hsize_t i;
+ size_t src_size;
+ size_t *src_offset;
+ size_t *src_sizes;
+ int has_fill=0;
+
+ /*-------------------------------------------------------------------------
+ * first we get information about type size and offsets on disk
+ *-------------------------------------------------------------------------
+ */
+
+ /* get the number of records and fields */
+ if (H5TBget_table_info ( loc_id1, dset_name1, &nfields, &nrecords ) < 0)
+ return -1;
+
+ src_offset = (size_t *)malloc((size_t)nfields * sizeof(size_t));
+ src_sizes = (size_t *)malloc((size_t)nfields * sizeof(size_t));
+
+ if (src_offset == NULL )
+ return -1;
+
+ /* get field info */
+ if (H5TBget_field_info( loc_id1, dset_name1, NULL, src_sizes, src_offset, &src_size ) < 0)
+ return -1;
+
+ /*-------------------------------------------------------------------------
+ * get information about the first table
+ *-------------------------------------------------------------------------
+ */
+
+ /* open the 1st dataset. */
+ if ((did_1 = H5Dopen2(loc_id1, dset_name1, H5P_DEFAULT)) < 0)
+ goto out;
+
+ /* get the datatype */
+ if ((tid_1 = H5Dget_type( did_1 )) < 0)
+ goto out;
+
+ /* get the dataspace handle */
+ if ((sid_1 = H5Dget_space( did_1 )) < 0)
+ goto out;
+
+ /* get creation properties list */
+ if ((pid_1 = H5Dget_create_plist( did_1 )) < 0)
+ goto out;
+
+ /* get the dimensions */
+ if (H5TBget_table_info ( loc_id1, dset_name1, &nfields, &nrecords ) < 0)
+ return -1;
+
+ /*-------------------------------------------------------------------------
+ * make the merged table with no data originally
+ *-------------------------------------------------------------------------
+ */
+
+ /* clone the property list */
+ if ((pid_3 = H5Pcopy(pid_1)) < 0)
+ goto out;
+
+ /* clone the type id */
+ if ((tid_3 = H5Tcopy(tid_1)) < 0)
+ goto out;
+
+ /*-------------------------------------------------------------------------
+ * here we do not clone the file space from the 1st dataset, because we want to create
+ * an empty table. Instead we create a new dataspace with zero records and expandable.
+ *-------------------------------------------------------------------------
+ */
+ dims[0] = 0;
+
+ /* create a simple data space with unlimited size */
+ if ((sid_3 = H5Screate_simple(1, dims, maxdims)) < 0)
+ return -1;
+
+ /* create the dataset */
+ if ((did_3 = H5Dcreate2(loc_id1, dset_name3, tid_3, sid_3, H5P_DEFAULT, pid_3, H5P_DEFAULT)) < 0)
+ goto out;
+
+ /*-------------------------------------------------------------------------
+ * attach the conforming table attributes
+ *-------------------------------------------------------------------------
+ */
+ if (H5TB_attach_attributes("Merge table", loc_id1, dset_name3, nfields, tid_3) < 0)
+ goto out;
+
+ /*-------------------------------------------------------------------------
+ * get attributes
+ *-------------------------------------------------------------------------
+ */
+
+ type_size = H5Tget_size(tid_3);
+
+ /* alloc fill value attribute buffer */
+ tmp_fill_buf = (unsigned char *)malloc(type_size);
+
+ /* get the fill value attributes */
+ has_fill = H5TBAget_fill(loc_id1, dset_name1, did_1, tmp_fill_buf);
+
+ /*-------------------------------------------------------------------------
+ * attach the fill attributes from previous table
+ *-------------------------------------------------------------------------
+ */
+ if (has_fill == 1 )
+ {
+
+ if (( sid = H5Screate(H5S_SCALAR)) < 0)
+ goto out;
+
+ for ( i = 0; i < nfields; i++)
+ {
+
+ /* get the member type */
+ if (( member_type_id = H5Tget_member_type( tid_3, (unsigned) i )) < 0)
+ goto out;
+
+ /* get the member offset */
+ member_offset = H5Tget_member_offset(tid_3, (unsigned)i);
+
+ strcpy(attr_name, "FIELD_");
+ sprintf(aux, "%d", (int)i);
+ strcat(attr_name, aux);
+ sprintf(aux, "%s", "_FILL");
+ strcat(attr_name, aux);
+
+ if ((attr_id = H5Acreate2(did_3, attr_name, member_type_id, sid, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ goto out;
+
+ if (H5Awrite(attr_id, member_type_id, tmp_fill_buf+member_offset) < 0)
+ goto out;
+
+ if (H5Aclose(attr_id) < 0)
+ goto out;
+
+ if (H5Tclose(member_type_id) < 0)
+ goto out;
+ }
+
+ /* close data space. */
+ if (H5Sclose( sid ) < 0)
+ goto out;
+ }
+
+ /*-------------------------------------------------------------------------
+ * read data from 1st table
+ *-------------------------------------------------------------------------
+ */
+
+ tmp_buf = (unsigned char *)calloc((size_t) nrecords, type_size );
+
+ /* define a hyperslab in the dataset of the size of the records */
+ offset[0] = 0;
+ count[0] = nrecords;
+ if (H5Sselect_hyperslab( sid_1, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
+ goto out;
+
+ /* create a memory dataspace handle */
+ mem_size[0] = count[0];
+ if ((m_sid = H5Screate_simple( 1, mem_size, NULL )) < 0)
+ goto out;
+
+ if (H5Dread( did_1, tid_1, m_sid, sid_1, H5P_DEFAULT, tmp_buf ) < 0)
+ goto out;
+
+ /*-------------------------------------------------------------------------
+ * save data from 1st table into new table
+ *-------------------------------------------------------------------------
+ */
+
+ /* append the records to the new table */
+ if (H5TBappend_records( loc_id1, dset_name3, nrecords, src_size, src_offset, src_sizes, tmp_buf ) < 0)
+ goto out;
+
+ /*-------------------------------------------------------------------------
+ * release resources from 1st table
+ *-------------------------------------------------------------------------
+ */
+
+ if (H5Sclose( m_sid ) < 0)
+ goto out;
+ if(H5Sclose( sid_1 ) < 0)
+ goto out;
+ if(H5Tclose( tid_1 ) < 0)
+ goto out;
+ if(H5Pclose( pid_1 ) < 0)
+ goto out;
+ if(H5Dclose( did_1 ) < 0)
+ goto out;
+
+ /* Release resources. */
+ free( tmp_buf );
+
+ /*-------------------------------------------------------------------------
+ * get information about the 2nd table
+ *-------------------------------------------------------------------------
+ */
+
+ /* open the dataset. */
+ if ((did_2 = H5Dopen2(loc_id2, dset_name2, H5P_DEFAULT)) < 0)
+ goto out;
+
+ /* get the datatype */
+ if ((tid_2 = H5Dget_type( did_2 )) < 0)
+ goto out;
+
+ /* get the dataspace handle */
+ if ((sid_2 = H5Dget_space( did_2 )) < 0)
+ goto out;
+
+ /* get the property list handle */
+ if ((pid_2 = H5Dget_create_plist( did_2 )) < 0)
+ goto out;
+
+ /* get the dimensions */
+ if (H5TBget_table_info ( loc_id2, dset_name2, &nfields, &nrecords ) < 0)
+ return -1;
+
+ /*-------------------------------------------------------------------------
+ * read data from 2nd table
+ *-------------------------------------------------------------------------
+ */
+
+ tmp_buf = (unsigned char *)calloc((size_t) nrecords, type_size );
+
+ /* define a hyperslab in the dataset of the size of the records */
+ offset[0] = 0;
+ count[0] = nrecords;
+ if (H5Sselect_hyperslab( sid_2, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
+ goto out;
+
+ /* create a memory dataspace handle */
+ mem_size[0] = count[0];
+ if ((m_sid = H5Screate_simple( 1, mem_size, NULL )) < 0)
+ goto out;
+
+ if (H5Dread( did_2, tid_2, m_sid, sid_2, H5P_DEFAULT, tmp_buf ) < 0)
+ goto out;
+
+ /*-------------------------------------------------------------------------
+ * save data from 2nd table into new table
+ *-------------------------------------------------------------------------
+ */
+
+ /* append the records to the new table */
+ if (H5TBappend_records( loc_id1, dset_name3, nrecords, src_size, src_offset, src_sizes, tmp_buf ) < 0)
+ goto out;
+
+ /*-------------------------------------------------------------------------
+ * release resources from 2nd table
+ *-------------------------------------------------------------------------
+ */
+
+ if (H5Sclose( m_sid ) < 0)
+ goto out;
+ if (H5Sclose( sid_2 ) < 0)
+ goto out;
+ if (H5Tclose( tid_2 ) < 0)
+ return -1;
+ if (H5Pclose( pid_2 ) < 0)
+ goto out;
+ if (H5Dclose( did_2 ) < 0)
+ return -1;
+
+ /*-------------------------------------------------------------------------
+ * release resources from 3rd table
+ *-------------------------------------------------------------------------
+ */
+
+ if (H5Sclose( sid_3 ) < 0)
+ return -1;
+ if (H5Tclose( tid_3 ) < 0)
+ return -1;
+ if (H5Pclose( pid_3 ) < 0)
+ return -1;
+ if (H5Dclose( did_3 ) < 0)
+ return -1;
+
+ /* Release resources. */
+ free( tmp_buf );
+ free( tmp_fill_buf );
+ free( src_offset );
+ free( src_sizes );
+
+ return 0;
+
+ /* error zone */
out:
- H5Dclose( dataset_id1 );
- return -1;
-
+ H5E_BEGIN_TRY
+ {
+ H5Dclose(did_1);
+ H5Sclose(sid_1);
+ H5Tclose(tid_1);
+ H5Pclose(pid_1);
+ H5Dclose(did_2);
+ H5Sclose(sid_2);
+ H5Tclose(tid_2);
+ H5Pclose(pid_2);
+ H5Dclose(did_3);
+ H5Sclose(sid_3);
+ H5Tclose(tid_3);
+ H5Pclose(pid_3);
+ } H5E_END_TRY;
+ return -1;
+
}
-
-
/*-------------------------------------------------------------------------
* Function: H5TBinsert_field
*
@@ -2191,430 +2090,415 @@ herr_t H5TBinsert_field( hid_t loc_id,
hid_t field_type,
hsize_t position,
const void *fill_data,
- const void *data )
+ const void *buf )
{
-
- /* Identifiers for the 1st, original dataset */
- hid_t dataset_id1;
- hid_t type_id1;
- hid_t space_id1;
- hid_t plist_id1;
- hid_t mem_space_id1;
-
- /* Identifiers for the 2nd, new dataset */
- hid_t dataset_id2;
- hid_t type_id2;
- hid_t space_id2;
- hid_t plist_id2;
- hid_t mem_space_id2;
-
- hid_t member_type_id;
- size_t member_size;
- size_t new_member_size = 0;
- char *member_name;
- size_t total_size;
- hsize_t nfields;
- hsize_t nrecords;
- hsize_t dims_chunk[1];
- hsize_t dims[1];
- hsize_t maxdims[1] = { H5S_UNLIMITED };
- hsize_t count[1];
- hsize_t offset[1];
- hsize_t mem_size[1];
- hid_t write_type_id;
- hid_t PRESERVE;
- size_t curr_offset;
- int inserted;
- hsize_t idx;
- char table_title[255];
- size_t member_offset;
- char attr_name[255];
- hid_t attr_id;
- char aux[255];
- unsigned char *tmp_buf;
- unsigned char *tmp_fill_buf;
- hsize_t i;
-
- /* Get the number of records and fields */
- if(H5TBget_table_info ( loc_id, dset_name, &nfields, &nrecords ) < 0)
- return -1;
-
-/*-------------------------------------------------------------------------
- * Get information about the old data type
- *-------------------------------------------------------------------------
- */
-
- /* Open the dataset. */
- if((dataset_id1 = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
- return -1;
-
- /* Get creation properties list */
- if((plist_id1 = H5Dget_create_plist( dataset_id1 )) < 0)
- goto out;
-
- /* Get the datatype */
- if((type_id1 = H5Dget_type( dataset_id1 )) < 0)
- goto out;
-
- /* Get the size of the datatype */
- if(( total_size = H5Tget_size( type_id1 )) == 0 )
- goto out;
-
- /* Get the dataspace handle */
- if((space_id1 = H5Dget_space( dataset_id1 )) < 0)
- goto out;
-
- /* Get dimension */
- if(H5Sget_simple_extent_dims( space_id1, dims, NULL) < 0)
- goto out;
-
-/*-------------------------------------------------------------------------
- * Get attributes
- *-------------------------------------------------------------------------
- */
-
- /* Get the table title */
- if((H5TBAget_title( dataset_id1, table_title )) < 0)
- goto out;
-
- /* alloc fill value attribute buffer */
- tmp_fill_buf = (unsigned char *)malloc(total_size );
-
- /* Get the fill value attributes */
- if((H5TBAget_fill( loc_id, dset_name, dataset_id1, tmp_fill_buf )) < 0)
- goto out;
-
-/*-------------------------------------------------------------------------
- * Create a new data type
- *-------------------------------------------------------------------------
- */
-
- /* Get the new member size */
- member_size = H5Tget_size( field_type );
-
- /* Create the data type. */
- if (( type_id2 = H5Tcreate (H5T_COMPOUND,(size_t)(total_size + member_size) )) < 0)
- goto out;
-
- curr_offset = 0;
- inserted = 0;
-
- /* Insert the old fields, counting with the new one */
- for ( i = 0; i < nfields + 1; i++)
- {
- idx = i;
- if(inserted )
- idx = i - 1;
-
- if(i == position ) {
- /* Get the new member size */
- new_member_size = H5Tget_size( field_type );
-
- /* Insert the new field type */
- if(H5Tinsert( type_id2, field_name, curr_offset, field_type ) < 0)
- goto out;
-
- curr_offset += new_member_size;
-
- inserted = 1;
-
- continue;
- }
-
- /* Get the member name */
- member_name = H5Tget_member_name( type_id1, (unsigned)idx );
-
- /* Get the member type */
- if(( member_type_id = H5Tget_member_type( type_id1,(unsigned)idx )) < 0)
- goto out;
-
- /* Get the member size */
- member_size = H5Tget_size( member_type_id );
-
- /* Insert it into the new type */
- if(H5Tinsert( type_id2, member_name, curr_offset, member_type_id ) < 0)
- goto out;
-
- curr_offset += member_size;
-
- free( member_name );
-
- /* Close the member type */
- if(H5Tclose( member_type_id ) < 0)
- goto out;
- } /* i */
-
-/*-------------------------------------------------------------------------
- * Create a new temporary dataset
- *-------------------------------------------------------------------------
- */
-
- /* Retrieve the size of chunk */
- if(H5Pget_chunk(plist_id1, 1, dims_chunk) < 0)
- goto out;
-
- /* Create a new simple data space with unlimited size, using the dimension */
- if((space_id2 = H5Screate_simple( 1, dims, maxdims)) < 0)
- return -1;
-
- /* Modify dataset creation properties, i.e. enable chunking */
- plist_id2 = H5Pcreate(H5P_DATASET_CREATE);
- if(H5Pset_chunk(plist_id2, 1, dims_chunk) < 0)
- return -1;
-
- /* Create the dataset. */
- if((dataset_id2 = H5Dcreate2(loc_id, "new", type_id2, space_id2, H5P_DEFAULT, plist_id2, H5P_DEFAULT)) < 0)
- goto out;
-
-
-/*-------------------------------------------------------------------------
- * Read data from 1st table
- *-------------------------------------------------------------------------
- */
-
- tmp_buf = (unsigned char *)calloc((size_t)nrecords, (size_t)total_size);
-
- /* Define a hyperslab in the dataset of the size of the records */
- offset[0] = 0;
- count[0] = nrecords;
- if(H5Sselect_hyperslab(space_id1, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
- goto out;
-
- /* Create a memory dataspace handle */
- mem_size[0] = count[0];
- if((mem_space_id1 = H5Screate_simple(1, mem_size, NULL)) < 0)
- goto out;
-
- if(H5Dread(dataset_id1, type_id1, mem_space_id1, H5S_ALL, H5P_DEFAULT, tmp_buf) < 0)
- goto out;
-
-
-/*-------------------------------------------------------------------------
- * Save data from 1st table into new table, using the 1st type id
- *-------------------------------------------------------------------------
- */
-
- /* Write */
- if(H5Dwrite( dataset_id2, type_id1, mem_space_id1, H5S_ALL, H5P_DEFAULT, tmp_buf ) < 0)
- goto out;
-
-
-/*-------------------------------------------------------------------------
- * Save the function supplied data of the new field
- *-------------------------------------------------------------------------
- */
-
-
- /* Create a write id */
- if(( write_type_id = H5Tcreate( H5T_COMPOUND, (size_t)new_member_size )) < 0)
- goto out;
-
- /* The field in the file is found by its name */
- if(H5Tinsert( write_type_id, field_name, (size_t)0, field_type ) < 0)
- goto out;
-
- /* Create xfer properties to preserve initialized data */
- if ((PRESERVE = H5Pcreate (H5P_DATASET_XFER)) < 0)
- goto out;
- if (H5Pset_preserve (PRESERVE, 1) < 0)
- goto out;
-
- /* Only write if there is something to write */
- if(data )
- {
-
- /* Create a memory dataspace handle */
- if((mem_space_id2 = H5Screate_simple( 1, mem_size, NULL )) < 0)
- goto out;
-
- /* Write */
- if(H5Dwrite( dataset_id2, write_type_id, mem_space_id2, space_id2, PRESERVE, data ) < 0)
- goto out;
-
- /* Terminate access to the memory dataspace */
- if(H5Sclose( mem_space_id2 ) < 0)
- goto out;
- }
-
- /* End access to the property list */
- if(H5Pclose( PRESERVE ) < 0)
- goto out;
-
-
-
-/*-------------------------------------------------------------------------
- * Release resources from 1st table
- *-------------------------------------------------------------------------
- */
-
- /* Terminate access to the memory dataspace */
- if(H5Sclose( mem_space_id1 ) < 0)
- goto out;
-
- /* Release the datatype. */
- if(H5Tclose( type_id1 ) < 0)
- goto out;
-
- /* Terminate access to a property list */
- if(H5Pclose( plist_id1 ) < 0)
- goto out;
-
- /* Terminate access to the data space */
- if(H5Sclose( space_id1 ) < 0)
- goto out;
-
- /* End access to the dataset */
- if(H5Dclose( dataset_id1 ) < 0)
- goto out;
-
-
-/*-------------------------------------------------------------------------
- * Release resources from 2nd table
- *-------------------------------------------------------------------------
- */
-
- /* Terminate access to the dataspace */
- if(H5Sclose( space_id2 ) < 0)
- goto out;
-
- /* Release the datatype. */
- if(H5Tclose( type_id2 ) < 0)
- return -1;
-
- /* Terminate access to a property list */
- if(H5Pclose( plist_id2 ) < 0)
- goto out;
-
- /* End access to the dataset */
- if(H5Dclose( dataset_id2 ) < 0)
- return -1;
-/*-------------------------------------------------------------------------
- * Delete 1st table
- *-------------------------------------------------------------------------
- */
- if(H5Ldelete( loc_id, dset_name, H5P_DEFAULT ) < 0)
- return -1;
-
-/*-------------------------------------------------------------------------
- * Rename 2nd table
- *-------------------------------------------------------------------------
- */
-
- if(H5Lmove( loc_id, "new", H5L_SAME_LOC, dset_name, H5P_DEFAULT, H5P_DEFAULT ) < 0)
- return -1;
-
-/*-------------------------------------------------------------------------
- * Attach the conforming table attributes
- *-------------------------------------------------------------------------
- */
-
- /* Get the number of records and fields */
- if(H5TBget_table_info ( loc_id, dset_name, &nfields, &nrecords ) < 0)
- return -1;
-
- /* Open the dataset. */
- if((dataset_id1 = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
- return -1;
-
- /* Get the datatype */
- if((type_id1 = H5Dget_type( dataset_id1 )) < 0)
- goto out;
-
- /* Set the attributes */
- if(H5TB_attach_attributes( table_title, loc_id, dset_name,(hsize_t) nfields, type_id1 ) < 0)
- return -1;
-/*-------------------------------------------------------------------------
- * Attach the fill attributes from previous table
- *-------------------------------------------------------------------------
- */
-
- if (( space_id1 = H5Screate(H5S_SCALAR)) < 0)
- goto out;
-
- for ( i = 0; i < nfields-1; i++)
- {
- /* Get the member type */
- if(( member_type_id = H5Tget_member_type( type_id1, (unsigned) i )) < 0)
- goto out;
-
- /* Get the member offset */
- member_offset = H5Tget_member_offset(type_id1, (unsigned)i);
-
- strcpy(attr_name, "FIELD_");
- sprintf(aux, "%d", (int)i);
- strcat(attr_name, aux);
- sprintf(aux, "%s", "_FILL");
- strcat(attr_name, aux);
-
- if((attr_id = H5Acreate2(dataset_id1, attr_name, member_type_id, space_id1, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
-
- if(H5Awrite(attr_id, member_type_id, tmp_fill_buf+member_offset) < 0)
- goto out;
-
- if(H5Aclose(attr_id) < 0)
- goto out;
-
- /* Close the member type */
- if(H5Tclose(member_type_id) < 0)
- goto out;
- }
-
-/*-------------------------------------------------------------------------
- * Attach the fill attribute from the new field, if present
- *-------------------------------------------------------------------------
- */
- if(fill_data)
- {
-
- strcpy(attr_name, "FIELD_");
- sprintf(aux, "%d",(int)(nfields - 1));
- strcat(attr_name, aux);
- sprintf(aux, "%s", "_FILL");
- strcat(attr_name, aux);
-
- /* Get the member type */
- if((member_type_id = H5Tget_member_type(type_id1, (unsigned)nfields - 1)) < 0)
- goto out;
-
- if((attr_id = H5Acreate2(dataset_id1, attr_name, member_type_id, space_id1, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
-
- if(H5Awrite(attr_id, member_type_id, fill_data) < 0)
- goto out;
-
- if(H5Aclose(attr_id) < 0)
- goto out;
-
- if(H5Tclose(member_type_id) < 0)
- goto out;
-
- }
-
- /* Close data space. */
- if(H5Sclose( space_id1 ) < 0)
- goto out;
-
- /* Release the datatype. */
- if(H5Tclose( type_id1 ) < 0)
- goto out;
-
- /* End access to the dataset */
- if(H5Dclose( dataset_id1 ) < 0)
- goto out;
-
- /* Release resources. */
- free ( tmp_buf );
- free ( tmp_fill_buf );
-
-
-return 0;
-
+ /* identifiers for the 1st, original dataset */
+ hid_t did_1;
+ hid_t tid_1;
+ hid_t sid_1;
+ hid_t pid_1;
+ hid_t msid_1;
+ /* identifiers for the 2nd, new dataset */
+ hid_t did_2;
+ hid_t tid_2;
+ hid_t sid_2;
+ hid_t pid_2;
+ hid_t msid_2;
+ hid_t member_type_id;
+ size_t member_size;
+ size_t new_member_size = 0;
+ char *member_name;
+ size_t total_size;
+ hsize_t nfields;
+ hsize_t nrecords;
+ hsize_t dims_chunk[1];
+ hsize_t dims[1];
+ hsize_t maxdims[1] = { H5S_UNLIMITED };
+ hsize_t count[1];
+ hsize_t offset[1];
+ hsize_t mem_size[1];
+ hid_t write_type_id;
+ hid_t preserve_id;
+ size_t curr_offset;
+ int inserted;
+ hsize_t idx;
+ char table_title[255];
+ size_t member_offset;
+ char attr_name[255];
+ hid_t attr_id;
+ char aux[255];
+ unsigned char *tmp_buf;
+ unsigned char *tmp_fill_buf;
+ hsize_t i;
+
+ /* get the number of records and fields */
+ if (H5TBget_table_info ( loc_id, dset_name, &nfields, &nrecords ) < 0)
+ return -1;
+
+ /*-------------------------------------------------------------------------
+ * get information about the old data type
+ *-------------------------------------------------------------------------
+ */
+
+ /* open the dataset. */
+ if ((did_1 = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
+ return -1;
+
+ /* get creation properties list */
+ if ((pid_1 = H5Dget_create_plist( did_1 )) < 0)
+ goto out;
+
+ /* get the datatype */
+ if ((tid_1 = H5Dget_type( did_1 )) < 0)
+ goto out;
+
+ /* get the size of the datatype */
+ if (( total_size = H5Tget_size( tid_1 )) == 0 )
+ goto out;
+
+ /* get the dataspace handle */
+ if ((sid_1 = H5Dget_space( did_1 )) < 0)
+ goto out;
+
+ /* get dimension */
+ if (H5Sget_simple_extent_dims( sid_1, dims, NULL) < 0)
+ goto out;
+
+ /*-------------------------------------------------------------------------
+ * get attributes
+ *-------------------------------------------------------------------------
+ */
+
+ /* get the table title */
+ if ((H5TBAget_title( did_1, table_title )) < 0)
+ goto out;
+
+ /* alloc fill value attribute buffer */
+ tmp_fill_buf = (unsigned char *)malloc(total_size );
+
+ /* get the fill value attributes */
+ if ((H5TBAget_fill( loc_id, dset_name, did_1, tmp_fill_buf )) < 0)
+ goto out;
+
+ /*-------------------------------------------------------------------------
+ * create a new data type
+ *-------------------------------------------------------------------------
+ */
+
+ /* get the new member size */
+ member_size = H5Tget_size( field_type );
+
+ /* create the data type. */
+ if (( tid_2 = H5Tcreate (H5T_COMPOUND,(size_t)(total_size + member_size) )) < 0)
+ goto out;
+
+ curr_offset = 0;
+ inserted = 0;
+
+ /* insert the old fields, counting with the new one */
+ for ( i = 0; i < nfields + 1; i++)
+ {
+ idx = i;
+ if (inserted )
+ idx = i - 1;
+
+ if (i == position )
+ {
+ /* get the new member size */
+ new_member_size = H5Tget_size( field_type );
+
+ /* insert the new field type */
+ if (H5Tinsert( tid_2, field_name, curr_offset, field_type ) < 0)
+ goto out;
+
+ curr_offset += new_member_size;
+
+ inserted = 1;
+
+ continue;
+ }
+
+ /* get the member name */
+ member_name = H5Tget_member_name( tid_1, (unsigned)idx );
+
+ /* get the member type */
+ if (( member_type_id = H5Tget_member_type( tid_1,(unsigned)idx )) < 0)
+ goto out;
+
+ /* get the member size */
+ member_size = H5Tget_size( member_type_id );
+
+ /* insert it into the new type */
+ if (H5Tinsert( tid_2, member_name, curr_offset, member_type_id ) < 0)
+ goto out;
+
+ curr_offset += member_size;
+
+ free( member_name );
+
+ /* close the member type */
+ if(H5Tclose( member_type_id ) < 0)
+ goto out;
+
+ } /* i */
+
+ /*-------------------------------------------------------------------------
+ * create a new temporary dataset
+ *-------------------------------------------------------------------------
+ */
+
+ /* retrieve the size of chunk */
+ if (H5Pget_chunk(pid_1, 1, dims_chunk) < 0)
+ goto out;
+
+ /* create a new simple data space with unlimited size, using the dimension */
+ if ((sid_2 = H5Screate_simple( 1, dims, maxdims)) < 0)
+ return -1;
+
+ /* modify dataset creation properties, i.e. enable chunking */
+ pid_2 = H5Pcreate(H5P_DATASET_CREATE);
+ if (H5Pset_chunk(pid_2, 1, dims_chunk) < 0)
+ return -1;
+
+ /* create the dataset. */
+ if ((did_2 = H5Dcreate2(loc_id, "new", tid_2, sid_2, H5P_DEFAULT, pid_2, H5P_DEFAULT)) < 0)
+ goto out;
+
+ /*-------------------------------------------------------------------------
+ * read data from 1st table
+ *-------------------------------------------------------------------------
+ */
+
+ tmp_buf = (unsigned char *)calloc((size_t)nrecords, (size_t)total_size);
+
+ /* define a hyperslab in the dataset of the size of the records */
+ offset[0] = 0;
+ count[0] = nrecords;
+ if (H5Sselect_hyperslab(sid_1, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
+ goto out;
+
+ /* create a memory dataspace handle */
+ mem_size[0] = count[0];
+ if ((msid_1 = H5Screate_simple(1, mem_size, NULL)) < 0)
+ goto out;
+
+ if (H5Dread(did_1, tid_1, msid_1, H5S_ALL, H5P_DEFAULT, tmp_buf) < 0)
+ goto out;
+
+ /*-------------------------------------------------------------------------
+ * save data from 1st table into new table, using the 1st type id
+ *-------------------------------------------------------------------------
+ */
+
+ /* write */
+ if (H5Dwrite( did_2, tid_1, msid_1, H5S_ALL, H5P_DEFAULT, tmp_buf ) < 0)
+ goto out;
+
+ /*-------------------------------------------------------------------------
+ * save the function supplied data of the new field
+ *-------------------------------------------------------------------------
+ */
+
+ /* create a write id */
+ if (( write_type_id = H5Tcreate( H5T_COMPOUND, (size_t)new_member_size )) < 0)
+ goto out;
+
+ /* the field in the file is found by its name */
+ if (H5Tinsert( write_type_id, field_name, (size_t)0, field_type ) < 0)
+ goto out;
+
+ /* create xfer properties to preserve initialized data */
+ if ((preserve_id = H5Pcreate (H5P_DATASET_XFER)) < 0)
+ goto out;
+ if (H5Pset_preserve (preserve_id, 1) < 0)
+ goto out;
+
+ /* only write if there is something to write */
+ if ( buf )
+ {
+ /* create a memory dataspace handle */
+ if ((msid_2 = H5Screate_simple( 1, mem_size, NULL )) < 0)
+ goto out;
+
+ /* write */
+ if (H5Dwrite( did_2, write_type_id, msid_2, sid_2, preserve_id, buf ) < 0)
+ goto out;
+
+ /* terminate access to the memory dataspace */
+ if (H5Sclose( msid_2 ) < 0)
+ goto out;
+ }
+
+ /* end access to the property list */
+ if (H5Pclose( preserve_id ) < 0)
+ goto out;
+
+ /*-------------------------------------------------------------------------
+ * release resources from 1st table
+ *-------------------------------------------------------------------------
+ */
+
+ if (H5Sclose( msid_1 ) < 0)
+ goto out;
+ if (H5Tclose( tid_1 ) < 0)
+ goto out;
+ if (H5Pclose( pid_1 ) < 0)
+ goto out;
+ if (H5Sclose( sid_1 ) < 0)
+ goto out;
+ if (H5Dclose( did_1 ) < 0)
+ goto out;
+
+
+ /*-------------------------------------------------------------------------
+ * release resources from 2nd table
+ *-------------------------------------------------------------------------
+ */
+
+ if (H5Sclose( sid_2 ) < 0)
+ goto out;
+ if (H5Tclose( tid_2 ) < 0)
+ goto out;
+ if (H5Pclose( pid_2 ) < 0)
+ goto out;
+ if (H5Dclose( did_2 ) < 0)
+ goto out;
+
+ /*-------------------------------------------------------------------------
+ * delete 1st table
+ *-------------------------------------------------------------------------
+ */
+ if (H5Ldelete( loc_id, dset_name, H5P_DEFAULT ) < 0)
+ return -1;
+
+ /*-------------------------------------------------------------------------
+ * rename 2nd table
+ *-------------------------------------------------------------------------
+ */
+
+ if (H5Lmove( loc_id, "new", H5L_SAME_LOC, dset_name, H5P_DEFAULT, H5P_DEFAULT ) < 0)
+ return -1;
+
+ /*-------------------------------------------------------------------------
+ * attach the conforming table attributes
+ *-------------------------------------------------------------------------
+ */
+
+ /* get the number of records and fields */
+ if (H5TBget_table_info ( loc_id, dset_name, &nfields, &nrecords ) < 0)
+ return -1;
+
+ /* open the dataset. */
+ if ((did_1 = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
+ return -1;
+
+ /* get the datatype */
+ if ((tid_1 = H5Dget_type( did_1 )) < 0)
+ goto out;
+
+ /* set the attributes */
+ if (H5TB_attach_attributes( table_title, loc_id, dset_name,(hsize_t) nfields, tid_1 ) < 0)
+ return -1;
+
+ /*-------------------------------------------------------------------------
+ * attach the fill attributes from previous table
+ *-------------------------------------------------------------------------
+ */
+
+ if (( sid_1 = H5Screate(H5S_SCALAR)) < 0)
+ goto out;
+
+ for ( i = 0; i < nfields-1; i++)
+ {
+ /* get the member type */
+ if(( member_type_id = H5Tget_member_type( tid_1, (unsigned) i )) < 0)
+ goto out;
+
+ /* get the member offset */
+ member_offset = H5Tget_member_offset(tid_1, (unsigned)i);
+
+ strcpy(attr_name, "FIELD_");
+ sprintf(aux, "%d", (int)i);
+ strcat(attr_name, aux);
+ sprintf(aux, "%s", "_FILL");
+ strcat(attr_name, aux);
+
+ if ((attr_id = H5Acreate2(did_1, attr_name, member_type_id, sid_1, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ goto out;
+
+ if (H5Awrite(attr_id, member_type_id, tmp_fill_buf+member_offset) < 0)
+ goto out;
+
+ if (H5Aclose(attr_id) < 0)
+ goto out;
+
+ /* close the member type */
+ if (H5Tclose(member_type_id) < 0)
+ goto out;
+ }
+
+ /*-------------------------------------------------------------------------
+ * attach the fill attribute from the new field, if present
+ *-------------------------------------------------------------------------
+ */
+ if (fill_data)
+ {
+
+ strcpy(attr_name, "FIELD_");
+ sprintf(aux, "%d",(int)(nfields - 1));
+ strcat(attr_name, aux);
+ sprintf(aux, "%s", "_FILL");
+ strcat(attr_name, aux);
+
+ /* get the member type */
+ if ((member_type_id = H5Tget_member_type(tid_1, (unsigned)nfields - 1)) < 0)
+ goto out;
+
+ if ((attr_id = H5Acreate2(did_1, attr_name, member_type_id, sid_1, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ goto out;
+
+ if (H5Awrite(attr_id, member_type_id, fill_data) < 0)
+ goto out;
+
+ if (H5Aclose(attr_id) < 0)
+ goto out;
+
+ if (H5Tclose(member_type_id) < 0)
+ goto out;
+
+ }
+
+ /* close */
+ if (H5Sclose( sid_1 ) < 0)
+ goto out;
+ if (H5Tclose( tid_1 ) < 0)
+ goto out;
+ if (H5Dclose( did_1 ) < 0)
+ goto out;
+
+ /* release resources. */
+ free ( tmp_buf );
+ free ( tmp_fill_buf );
+
+ return 0;
+
+ /* error zone */
out:
- H5Dclose( dataset_id1 );
- return -1;
+ H5E_BEGIN_TRY
+ {
+ H5Dclose(did_1);
+ H5Sclose(sid_1);
+ H5Tclose(tid_1);
+ H5Pclose(pid_1);
+ H5Dclose(did_2);
+ H5Sclose(sid_2);
+ H5Tclose(tid_2);
+ H5Pclose(pid_2);
+
+ } H5E_END_TRY;
+ return -1;
+
}
-
/*-------------------------------------------------------------------------
* Function: H5TBdelete_field
*
@@ -2638,437 +2522,432 @@ herr_t H5TBdelete_field( hid_t loc_id,
const char *dset_name,
const char *field_name )
{
-
- /* Identifiers for the 1st original dataset */
- hid_t dataset_id1;
- hid_t type_id1;
- hid_t space_id1;
- hid_t plist_id1;
-
- /* Identifiers for the 2nd new dataset */
- hid_t dataset_id2;
- hid_t type_id2;
- hid_t space_id2;
- hid_t plist_id2;
-
- hid_t member_type_id;
- size_t member_size;
- char *member_name;
- size_t type_size1;
- size_t type_size2;
- hsize_t nfields;
- hsize_t nrecords;
- hsize_t dims_chunk[1];
- hsize_t dims[1];
- hsize_t maxdims[1] = { H5S_UNLIMITED };
- hid_t PRESERVE;
- size_t curr_offset;
- size_t delete_member_size = 0;
- hid_t read_type_id;
- hid_t write_type_id;
- unsigned char *tmp_buf;
- unsigned char *tmp_fill_buf;
- char attr_name[255];
- char aux[255];
- char table_title[255];
- size_t member_offset;
- hid_t attr_id;
- hsize_t i;
- int has_fill=0;
-
- /* Get the number of records and fields */
- if(H5TBget_table_info ( loc_id, dset_name, &nfields, &nrecords ) < 0)
- return -1;
-
-/*-------------------------------------------------------------------------
- * Get information about the old data type
- *-------------------------------------------------------------------------
- */
-
- /* Open the dataset. */
- if((dataset_id1 = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
- return -1;
-
- /* Get creation properties list */
- if((plist_id1 = H5Dget_create_plist( dataset_id1 )) < 0)
- goto out;
-
- /* Get the datatype */
- if((type_id1 = H5Dget_type( dataset_id1 )) < 0)
- goto out;
-
- /* Get the size of the datatype */
- type_size1 = H5Tget_size( type_id1 );
-
- /* Get the dataspace handle */
- if((space_id1 = H5Dget_space( dataset_id1 )) < 0)
- goto out;
-
- /* Get dimension */
- if(H5Sget_simple_extent_dims( space_id1, dims, NULL) < 0)
- goto out;
-
-/*-------------------------------------------------------------------------
- * Create a new data type; first we find the size of the datatype to delete
- *-------------------------------------------------------------------------
- */
-
- /* Check out the field */
- for ( i = 0; i < nfields; i++)
- {
-
- /* Get the member name */
- member_name = H5Tget_member_name( type_id1,(unsigned) i );
-
- /* We want to find the field to delete */
- if(H5TB_find_field( member_name, field_name ) > 0 )
- {
- /* Get the member type */
- if(( member_type_id = H5Tget_member_type( type_id1,(unsigned) i )) < 0)
- goto out;
-
- /* Get the member size */
- delete_member_size = H5Tget_size( member_type_id );
-
- /* Close the member type */
- if(H5Tclose( member_type_id ) < 0)
- goto out;
-
- free( member_name );
-
- break;
-
- }
-
- free( member_name );
-
- } /* i */
-
- /* No field to delete was found */
- if(delete_member_size == 0 )
- goto out;
-
-/*-------------------------------------------------------------------------
- * Create a new data type; we now insert all the fields into the new type
- *-------------------------------------------------------------------------
- */
-
- type_size2 = type_size1 - delete_member_size;
-
- /* Create the data type. */
- if (( type_id2 = H5Tcreate (H5T_COMPOUND, type_size2 )) < 0)
- goto out;
-
- curr_offset = 0;
-
- /* alloc fill value attribute buffer */
- tmp_fill_buf = (unsigned char *)malloc((size_t) type_size2 );
-
-/*-------------------------------------------------------------------------
- * Get attributes from previous table in the process
- *-------------------------------------------------------------------------
- */
-
- /* Get the table title */
- if((H5TBAget_title( dataset_id1, table_title )) < 0)
- goto out;
-
- /* Insert the old fields except the one to delete */
- for ( i = 0; i < nfields; i++)
- {
-
- /* Get the member name */
- member_name = H5Tget_member_name( type_id1, (unsigned) i );
-
- /* We want to skip the field to delete */
- if(H5TB_find_field( member_name, field_name ) > 0 )
- {
- free( member_name );
- continue;
- }
-
- /* Get the member type */
- if(( member_type_id = H5Tget_member_type( type_id1, (unsigned)i )) < 0)
- goto out;
-
- /* Get the member size */
- member_size = H5Tget_size( member_type_id );
-
- /* Insert it into the new type */
- if(H5Tinsert( type_id2, member_name, curr_offset, member_type_id ) < 0)
- goto out;
-
- /*-------------------------------------------------------------------------
- * Get the fill value information
- *-------------------------------------------------------------------------
- */
-
- strcpy( attr_name, "FIELD_" );
- sprintf( aux, "%d", (int)i );
- strcat( attr_name, aux );
- sprintf( aux, "%s", "_FILL" );
- strcat( attr_name, aux );
-
- /* Check if we have the _FILL attribute */
- has_fill = H5LT_find_attribute( dataset_id1, attr_name );
-
- /* Get it */
- if(has_fill == 1 )
- {
- if(H5LT_get_attribute_disk( dataset_id1, attr_name, tmp_fill_buf+curr_offset ) < 0)
- goto out;
- }
-
- curr_offset += member_size;
-
- free(member_name);
-
- /* Close the member type */
- if(H5Tclose(member_type_id) < 0)
- goto out;
- } /* i */
-
-/*-------------------------------------------------------------------------
- * Create a new temporary dataset
- *-------------------------------------------------------------------------
- */
-
- /* Retrieve the size of chunk */
- if(H5Pget_chunk(plist_id1, 1, dims_chunk) < 0)
- goto out;
-
- /* Create a new simple data space with unlimited size, using the dimension */
- if((space_id2 = H5Screate_simple(1, dims, maxdims)) < 0)
- return -1;
-
- /* Modify dataset creation properties, i.e. enable chunking */
- plist_id2 = H5Pcreate(H5P_DATASET_CREATE);
- if(H5Pset_chunk(plist_id2, 1, dims_chunk) < 0)
- return -1;
-
- /* Create the dataset. */
- if((dataset_id2 = H5Dcreate2(loc_id, "new", type_id2, space_id2, H5P_DEFAULT, plist_id2, H5P_DEFAULT)) < 0)
- goto out;
-
-/*-------------------------------------------------------------------------
- * We have to read field by field of the old dataset and save it into the new one
- *-------------------------------------------------------------------------
- */
- for ( i = 0; i < nfields; i++) {
- /* Get the member name */
- member_name = H5Tget_member_name(type_id1, (unsigned)i);
-
- /* Skip the field to delete */
- if(H5TB_find_field(member_name, field_name) > 0) {
- free(member_name);
- continue;
- }
-
- /* Get the member type */
- if((member_type_id = H5Tget_member_type(type_id1, (unsigned)i)) < 0)
- goto out;
-
- /* Get the member size */
- member_size = H5Tget_size(member_type_id);
-
- /* Create a read id */
- if((read_type_id = H5Tcreate(H5T_COMPOUND, member_size)) < 0)
- goto out;
-
- /* Insert it into the new type */
- if(H5Tinsert( read_type_id, member_name, (size_t)0, member_type_id ) < 0)
- goto out;
-
- tmp_buf = (unsigned char *)calloc((size_t) nrecords, member_size );
-
- /* Read */
- if(H5Dread( dataset_id1, read_type_id, H5S_ALL, H5S_ALL, H5P_DEFAULT, tmp_buf ) < 0)
- goto out;
-
- /* Create a write id */
- if(( write_type_id = H5Tcreate( H5T_COMPOUND, member_size )) < 0)
- goto out;
-
- /* The field in the file is found by its name */
- if(H5Tinsert( write_type_id, member_name, (size_t)0, member_type_id ) < 0)
- goto out;
-
- /* Create xfer properties to preserve initialized data */
- if ((PRESERVE = H5Pcreate (H5P_DATASET_XFER)) < 0)
- goto out;
- if (H5Pset_preserve (PRESERVE, 1) < 0)
- goto out;
-
- /* Write */
- if(H5Dwrite( dataset_id2, write_type_id, H5S_ALL, H5S_ALL, PRESERVE, tmp_buf ) < 0)
- goto out;
-
- /* End access to the property list */
- if(H5Pclose( PRESERVE ) < 0)
- goto out;
-
- /* Close the member type */
- if(H5Tclose( member_type_id ) < 0)
- goto out;
-
- /* Close the read type */
- if(H5Tclose( read_type_id ) < 0)
- goto out;
-
- /* Close the write type */
- if(H5Tclose( write_type_id ) < 0)
- goto out;
-
- /* Release resources. */
- free( member_name );
- free ( tmp_buf );
-
- } /* i */
-
-/*-------------------------------------------------------------------------
- * Release resources from 1st table
- *-------------------------------------------------------------------------
- */
-
- /* Release the datatype. */
- if(H5Tclose( type_id1 ) < 0)
- goto out;
-
- /* Terminate access to a property list */
- if(H5Pclose( plist_id1 ) < 0)
- goto out;
-
- /* Terminate access to the data space */
- if(H5Sclose( space_id1 ) < 0)
- goto out;
-
- /* End access to the dataset */
- if(H5Dclose( dataset_id1 ) < 0)
- goto out;
-
-
-/*-------------------------------------------------------------------------
- * Release resources from 2nd table
- *-------------------------------------------------------------------------
- */
-
- /* Terminate access to the dataspace */
- if(H5Sclose( space_id2 ) < 0)
- goto out;
-
- /* Release the datatype. */
- if(H5Tclose( type_id2 ) < 0)
- return -1;
-
- /* Terminate access to a property list */
- if(H5Pclose( plist_id2 ) < 0)
- goto out;
-
- /* End access to the dataset */
- if(H5Dclose( dataset_id2 ) < 0)
- return -1;
-
-/*-------------------------------------------------------------------------
- * Delete 1st table
- *-------------------------------------------------------------------------
- */
-
- if(H5Ldelete( loc_id, dset_name, H5P_DEFAULT ) < 0)
- return -1;
-
-/*-------------------------------------------------------------------------
- * Rename 2nd table
- *-------------------------------------------------------------------------
- */
-
- if(H5Lmove( loc_id, "new", H5L_SAME_LOC, dset_name, H5P_DEFAULT, H5P_DEFAULT ) < 0)
- return -1;
-
-/*-------------------------------------------------------------------------
- * Attach the conforming table attributes
- *-------------------------------------------------------------------------
- */
-
- /* Get the number of records and fields */
- if(H5TBget_table_info ( loc_id, dset_name, &nfields, &nrecords ) < 0)
- return -1;
-
- /* Open the dataset. */
- if((dataset_id1 = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
- return -1;
-
- /* Get the datatype */
- if((type_id1 = H5Dget_type( dataset_id1 )) < 0)
- goto out;
-
- /* Set the attributes */
- if(H5TB_attach_attributes( table_title, loc_id, dset_name, nfields, type_id1 ) < 0)
- return -1;
-
-/*-------------------------------------------------------------------------
- * Attach the fill attributes from previous table
- *-------------------------------------------------------------------------
- */
-
- if(has_fill == 1)
- {
- if((space_id1 = H5Screate(H5S_SCALAR)) < 0)
- goto out;
-
- for(i = 0; i < nfields; i++)
- {
-
- /* Get the member type */
- if(( member_type_id = H5Tget_member_type( type_id1, (unsigned)i )) < 0)
- goto out;
-
- /* Get the member offset */
- member_offset = H5Tget_member_offset(type_id1, (unsigned)i);
-
- strcpy(attr_name, "FIELD_");
- sprintf(aux, "%d", (int)i);
- strcat(attr_name, aux);
- sprintf(aux, "%s", "_FILL");
- strcat(attr_name, aux);
-
- if((attr_id = H5Acreate2(dataset_id1, attr_name, member_type_id, space_id1, H5P_DEFAULT, H5P_DEFAULT)) < 0)
- goto out;
-
- if(H5Awrite(attr_id, member_type_id, tmp_fill_buf+member_offset) < 0)
- goto out;
-
- if(H5Aclose(attr_id) < 0)
- goto out;
-
- /* Close the member type */
- if(H5Tclose(member_type_id) < 0)
- goto out;
- }
-
- /* Close data space. */
- if(H5Sclose(space_id1) < 0)
- goto out;
-
- } /*has_fill*/
-
- /* Release the datatype. */
- if(H5Tclose( type_id1 ) < 0)
- goto out;
-
- /* End access to the dataset */
- if(H5Dclose( dataset_id1 ) < 0)
- goto out;
-
- /* Release resources. */
- free ( tmp_fill_buf );
-
-return 0;
-
+ /* identifiers for the 1st original dataset */
+ hid_t did_1;
+ hid_t tid_1;
+ hid_t sid_1;
+ hid_t pid_1;
+ /* identifiers for the 2nd new dataset */
+ hid_t did_2;
+ hid_t tid_2;
+ hid_t sid_2;
+ hid_t pid_2;
+ hid_t member_type_id;
+ size_t member_size;
+ char *member_name;
+ size_t type_size1;
+ size_t type_size2;
+ hsize_t nfields;
+ hsize_t nrecords;
+ hsize_t dims_chunk[1];
+ hsize_t dims[1];
+ hsize_t maxdims[1] = { H5S_UNLIMITED };
+ hid_t preserve_id;
+ size_t curr_offset;
+ size_t delete_member_size = 0;
+ hid_t read_type_id;
+ hid_t write_type_id;
+ unsigned char *tmp_buf;
+ unsigned char *tmp_fill_buf;
+ char attr_name[255];
+ char aux[255];
+ char table_title[255];
+ size_t member_offset;
+ hid_t attr_id;
+ hsize_t i;
+ int has_fill=0;
+
+ /* get the number of records and fields */
+ if (H5TBget_table_info ( loc_id, dset_name, &nfields, &nrecords ) < 0)
+ return -1;
+
+ /*-------------------------------------------------------------------------
+ * get information about the old data type
+ *-------------------------------------------------------------------------
+ */
+
+ /* open the dataset. */
+ if ((did_1 = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
+ return -1;
+
+ /* get creation properties list */
+ if ((pid_1 = H5Dget_create_plist( did_1 )) < 0)
+ goto out;
+
+ /* get the datatype */
+ if ((tid_1 = H5Dget_type( did_1 )) < 0)
+ goto out;
+
+ /* get the size of the datatype */
+ type_size1 = H5Tget_size( tid_1 );
+
+ /* get the dataspace handle */
+ if ((sid_1 = H5Dget_space( did_1 )) < 0)
+ goto out;
+
+ /* get dimension */
+ if (H5Sget_simple_extent_dims( sid_1, dims, NULL) < 0)
+ goto out;
+
+ /*-------------------------------------------------------------------------
+ * create a new data type; first we find the size of the datatype to delete
+ *-------------------------------------------------------------------------
+ */
+
+ /* check out the field */
+ for ( i = 0; i < nfields; i++)
+ {
+ /* get the member name */
+ member_name = H5Tget_member_name( tid_1,(unsigned) i );
+
+ /* we want to find the field to delete */
+ if (H5TB_find_field( member_name, field_name ) > 0 )
+ {
+ /* get the member type */
+ if (( member_type_id = H5Tget_member_type( tid_1,(unsigned) i )) < 0)
+ goto out;
+
+ /* get the member size */
+ delete_member_size = H5Tget_size( member_type_id );
+
+ /* close the member type */
+ if (H5Tclose( member_type_id ) < 0)
+ goto out;
+
+ free( member_name );
+
+ break;
+
+ }
+
+ free( member_name );
+
+ } /* i */
+
+ /* no field to delete was found */
+ if (delete_member_size == 0 )
+ goto out;
+
+ /*-------------------------------------------------------------------------
+ * create a new data type; we now insert all the fields into the new type
+ *-------------------------------------------------------------------------
+ */
+
+ type_size2 = type_size1 - delete_member_size;
+
+ /* create the data type. */
+ if (( tid_2 = H5Tcreate (H5T_COMPOUND, type_size2 )) < 0)
+ goto out;
+
+ curr_offset = 0;
+
+ /* alloc fill value attribute buffer */
+ tmp_fill_buf = (unsigned char *)malloc((size_t) type_size2 );
+
+ /*-------------------------------------------------------------------------
+ * get attributes from previous table in the process
+ *-------------------------------------------------------------------------
+ */
+
+ /* get the table title */
+ if ((H5TBAget_title( did_1, table_title )) < 0)
+ goto out;
+
+ /* insert the old fields except the one to delete */
+ for ( i = 0; i < nfields; i++)
+ {
+ /* get the member name */
+ member_name = H5Tget_member_name( tid_1, (unsigned) i );
+
+ /* we want to skip the field to delete */
+ if (H5TB_find_field( member_name, field_name ) > 0 )
+ {
+ free( member_name );
+ continue;
+ }
+
+ /* get the member type */
+ if (( member_type_id = H5Tget_member_type( tid_1, (unsigned)i )) < 0)
+ goto out;
+
+ /* get the member size */
+ member_size = H5Tget_size( member_type_id );
+
+ /* insert it into the new type */
+ if (H5Tinsert( tid_2, member_name, curr_offset, member_type_id ) < 0)
+ goto out;
+
+ /*-------------------------------------------------------------------------
+ * get the fill value information
+ *-------------------------------------------------------------------------
+ */
+
+ strcpy( attr_name, "FIELD_" );
+ sprintf( aux, "%d", (int)i );
+ strcat( attr_name, aux );
+ sprintf( aux, "%s", "_FILL" );
+ strcat( attr_name, aux );
+
+ /* check if we have the _FILL attribute */
+ has_fill = H5LT_find_attribute( did_1, attr_name );
+
+ /* get it */
+ if (has_fill == 1 )
+ {
+ if(H5LT_get_attribute_disk( did_1, attr_name, tmp_fill_buf+curr_offset ) < 0)
+ goto out;
+ }
+
+ curr_offset += member_size;
+
+ free(member_name);
+
+ /* close the member type */
+ if (H5Tclose(member_type_id) < 0)
+ goto out;
+ } /* i */
+
+ /*-------------------------------------------------------------------------
+ * create a new temporary dataset
+ *-------------------------------------------------------------------------
+ */
+
+ /* retrieve the size of chunk */
+ if (H5Pget_chunk(pid_1, 1, dims_chunk) < 0)
+ goto out;
+
+ /* create a new simple data space with unlimited size, using the dimension */
+ if ((sid_2 = H5Screate_simple(1, dims, maxdims)) < 0)
+ return -1;
+
+ /* modify dataset creation properties, i.e. enable chunking */
+ pid_2 = H5Pcreate(H5P_DATASET_CREATE);
+ if (H5Pset_chunk(pid_2, 1, dims_chunk) < 0)
+ return -1;
+
+ /* create the dataset. */
+ if ((did_2 = H5Dcreate2(loc_id, "new", tid_2, sid_2, H5P_DEFAULT, pid_2, H5P_DEFAULT)) < 0)
+ goto out;
+
+ /*-------------------------------------------------------------------------
+ * we have to read field by field of the old dataset and save it into the new one
+ *-------------------------------------------------------------------------
+ */
+ for ( i = 0; i < nfields; i++)
+ {
+ /* get the member name */
+ member_name = H5Tget_member_name(tid_1, (unsigned)i);
+
+ /* skip the field to delete */
+ if (H5TB_find_field(member_name, field_name) > 0)
+ {
+ free(member_name);
+ continue;
+ }
+
+ /* get the member type */
+ if ((member_type_id = H5Tget_member_type(tid_1, (unsigned)i)) < 0)
+ goto out;
+
+ /* get the member size */
+ member_size = H5Tget_size(member_type_id);
+
+ /* create a read id */
+ if ((read_type_id = H5Tcreate(H5T_COMPOUND, member_size)) < 0)
+ goto out;
+
+ /* insert it into the new type */
+ if (H5Tinsert( read_type_id, member_name, (size_t)0, member_type_id ) < 0)
+ goto out;
+
+ tmp_buf = (unsigned char *)calloc((size_t) nrecords, member_size );
+
+ /* read */
+ if (H5Dread( did_1, read_type_id, H5S_ALL, H5S_ALL, H5P_DEFAULT, tmp_buf ) < 0)
+ goto out;
+
+ /* create a write id */
+ if (( write_type_id = H5Tcreate( H5T_COMPOUND, member_size )) < 0)
+ goto out;
+
+ /* the field in the file is found by its name */
+ if (H5Tinsert( write_type_id, member_name, (size_t)0, member_type_id ) < 0)
+ goto out;
+
+ /* create xfer properties to preserve initialized data */
+ if ((preserve_id = H5Pcreate (H5P_DATASET_XFER)) < 0)
+ goto out;
+ if (H5Pset_preserve (preserve_id, 1) < 0)
+ goto out;
+
+ /* write */
+ if(H5Dwrite( did_2, write_type_id, H5S_ALL, H5S_ALL, preserve_id, tmp_buf ) < 0)
+ goto out;
+
+ /* end access to the property list */
+ if (H5Pclose( preserve_id ) < 0)
+ goto out;
+
+ /* close the member type */
+ if (H5Tclose( member_type_id ) < 0)
+ goto out;
+
+ /* close the read type */
+ if (H5Tclose( read_type_id ) < 0)
+ goto out;
+
+ /* close the write type */
+ if (H5Tclose( write_type_id ) < 0)
+ goto out;
+
+ /* release resources. */
+ free( member_name );
+ free ( tmp_buf );
+
+ } /* i */
+
+ /*-------------------------------------------------------------------------
+ * release resources from 1st table
+ *-------------------------------------------------------------------------
+ */
+
+ if (H5Tclose( tid_1 ) < 0)
+ goto out;
+ if (H5Pclose( pid_1 ) < 0)
+ goto out;
+ if (H5Sclose( sid_1 ) < 0)
+ goto out;
+ if (H5Dclose( did_1 ) < 0)
+ goto out;
+
+
+ /*-------------------------------------------------------------------------
+ * release resources from 2nd table
+ *-------------------------------------------------------------------------
+ */
+
+ if (H5Sclose( sid_2 ) < 0)
+ goto out;
+ if (H5Tclose( tid_2 ) < 0)
+ goto out;
+ if (H5Pclose( pid_2 ) < 0)
+ goto out;
+ if (H5Dclose( did_2 ) < 0)
+ goto out;
+
+ /*-------------------------------------------------------------------------
+ * delete 1st table
+ *-------------------------------------------------------------------------
+ */
+
+ if (H5Ldelete( loc_id, dset_name, H5P_DEFAULT ) < 0)
+ return -1;
+
+ /*-------------------------------------------------------------------------
+ * rename 2nd table
+ *-------------------------------------------------------------------------
+ */
+
+ if (H5Lmove( loc_id, "new", H5L_SAME_LOC, dset_name, H5P_DEFAULT, H5P_DEFAULT ) < 0)
+ return -1;
+
+ /*-------------------------------------------------------------------------
+ * attach the conforming table attributes
+ *-------------------------------------------------------------------------
+ */
+
+ /* get the number of records and fields */
+ if (H5TBget_table_info ( loc_id, dset_name, &nfields, &nrecords ) < 0)
+ return -1;
+
+ /* open the dataset. */
+ if ((did_1 = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
+ return -1;
+
+ /* get the datatype */
+ if ((tid_1 = H5Dget_type( did_1 )) < 0)
+ goto out;
+
+ /* set the attributes */
+ if (H5TB_attach_attributes( table_title, loc_id, dset_name, nfields, tid_1 ) < 0)
+ return -1;
+
+ /*-------------------------------------------------------------------------
+ * attach the fill attributes from previous table
+ *-------------------------------------------------------------------------
+ */
+
+ if (has_fill == 1)
+ {
+ if((sid_1 = H5Screate(H5S_SCALAR)) < 0)
+ goto out;
+
+ for(i = 0; i < nfields; i++)
+ {
+
+ /* get the member type */
+ if (( member_type_id = H5Tget_member_type( tid_1, (unsigned)i )) < 0)
+ goto out;
+
+ /* get the member offset */
+ member_offset = H5Tget_member_offset(tid_1, (unsigned)i);
+
+ strcpy(attr_name, "FIELD_");
+ sprintf(aux, "%d", (int)i);
+ strcat(attr_name, aux);
+ sprintf(aux, "%s", "_FILL");
+ strcat(attr_name, aux);
+
+ if ((attr_id = H5Acreate2(did_1, attr_name, member_type_id, sid_1, H5P_DEFAULT, H5P_DEFAULT)) < 0)
+ goto out;
+
+ if (H5Awrite(attr_id, member_type_id, tmp_fill_buf+member_offset) < 0)
+ goto out;
+
+ if (H5Aclose(attr_id) < 0)
+ goto out;
+
+ /* close the member type */
+ if (H5Tclose(member_type_id) < 0)
+ goto out;
+ }
+
+ /* close data space. */
+ if (H5Sclose(sid_1) < 0)
+ goto out;
+
+ } /*has_fill*/
+
+ /* release the datatype. */
+ if (H5Tclose( tid_1 ) < 0)
+ goto out;
+
+ /* end access to the dataset */
+ if (H5Dclose( did_1 ) < 0)
+ goto out;
+
+ /* Release resources. */
+ free ( tmp_fill_buf );
+
+ return 0;
+
+/* error zone */
out:
- H5Dclose( dataset_id1 );
- return -1;
+ H5E_BEGIN_TRY
+ {
+ H5Dclose(did_1);
+ H5Sclose(sid_1);
+ H5Tclose(tid_1);
+ H5Pclose(pid_1);
+ H5Dclose(did_2);
+ H5Sclose(sid_2);
+ H5Tclose(tid_2);
+ H5Pclose(pid_2);
+
+ } H5E_END_TRY;
+ return -1;
+
}
-
/*-------------------------------------------------------------------------
*
* Table attribute functions
@@ -3097,14 +2976,14 @@ out:
herr_t H5TBAget_title( hid_t loc_id,
char *table_title )
{
-
- /* Get the TITLE attribute */
- if(H5LT_get_attribute_disk( loc_id, "TITLE", table_title ) < 0)
- return -1;
-
-
- return 0;
-
+
+ /* Get the TITLE attribute */
+ if(H5LT_get_attribute_disk( loc_id, "TITLE", table_title ) < 0)
+ return -1;
+
+
+ return 0;
+
}
/*-------------------------------------------------------------------------
@@ -3131,56 +3010,56 @@ herr_t H5TBAget_fill( hid_t loc_id,
hid_t dset_id,
unsigned char *dst_buf )
{
-
- hsize_t nfields;
- hsize_t nrecords;
- char attr_name[255];
- char aux[255];
- hsize_t i;
- size_t *src_offset;
- int has_fill=0;
-
- /* Get the number of records and fields */
- if(H5TBget_table_info ( loc_id, dset_name, &nfields, &nrecords ) < 0)
- return -1;
-
- src_offset = (size_t *)malloc((size_t)nfields * sizeof(size_t));
-
- if (src_offset == NULL )
- return -1;
-
- /* Get field info */
- if(H5TBget_field_info( loc_id, dset_name, NULL, NULL, src_offset, NULL ) < 0)
- goto out;
-
- for ( i = 0; i < nfields; i++)
- {
- strcpy( attr_name, "FIELD_" );
- sprintf( aux, "%d", (int)i );
- strcat( attr_name, aux );
- sprintf( aux, "%s", "_FILL" );
- strcat( attr_name, aux );
-
- /* Check if we have the _FILL attribute */
- has_fill = H5LT_find_attribute( dset_id, attr_name );
-
- /* Get it */
- if(has_fill == 1 )
- {
- if(H5LT_get_attribute_disk( dset_id, attr_name, dst_buf+src_offset[i] ) < 0)
- goto out;
- }
-
- }
-
- free( src_offset );
-
- return has_fill;
-
+
+ hsize_t nfields;
+ hsize_t nrecords;
+ char attr_name[255];
+ char aux[255];
+ hsize_t i;
+ size_t *src_offset;
+ int has_fill=0;
+
+ /* get the number of records and fields */
+ if (H5TBget_table_info ( loc_id, dset_name, &nfields, &nrecords ) < 0)
+ return -1;
+
+ src_offset = (size_t *)malloc((size_t)nfields * sizeof(size_t));
+
+ if (src_offset == NULL )
+ return -1;
+
+ /* get field info */
+ if (H5TBget_field_info( loc_id, dset_name, NULL, NULL, src_offset, NULL ) < 0)
+ goto out;
+
+ for ( i = 0; i < nfields; i++)
+ {
+ strcpy( attr_name, "FIELD_" );
+ sprintf( aux, "%d", (int)i );
+ strcat( attr_name, aux );
+ sprintf( aux, "%s", "_FILL" );
+ strcat( attr_name, aux );
+
+ /* check if we have the _FILL attribute */
+ has_fill = H5LT_find_attribute( dset_id, attr_name );
+
+ /* get it */
+ if (has_fill == 1 )
+ {
+ if(H5LT_get_attribute_disk( dset_id, attr_name, dst_buf+src_offset[i] ) < 0)
+ goto out;
+ }
+
+ }
+
+ free( src_offset );
+
+ return has_fill;
+
out:
- free( src_offset );
- return -1;
-
+ free( src_offset );
+ return -1;
+
}
@@ -3204,9 +3083,12 @@ out:
*
* Comments:
*
- * Modifications: May 08, 2003
+ * Modifications:
+ * May 08, 2003
* In version 2.0 of Table, the number of records is stored as an
* attribute "NROWS"
+ * November 24, 2008
+ * In version 3.0 of Table, "NROWS" was deprecated
*
*
*-------------------------------------------------------------------------
@@ -3217,85 +3099,75 @@ herr_t H5TBget_table_info ( hid_t loc_id,
hsize_t *nfields,
hsize_t *nrecords )
{
- hid_t tid;
- hid_t sid=-1;
- hid_t did;
- int num_members;
- hsize_t dims[1];
- int has_attr;
- hsize_t n[1];
-
- /* Open the dataset. */
- if((did = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
- return -1;
-
- /* Get the datatype */
- if((tid = H5Dget_type( did )) < 0)
- goto out;
-
- /* Get the number of members */
- if((num_members = H5Tget_nmembers( tid )) < 0)
- goto out;
-
- if (nfields)
- *nfields = num_members;
-
-
-/*-------------------------------------------------------------------------
- * Get number of records
- *-------------------------------------------------------------------------
- */
-
- if (nrecords)
- {
- /* Try to find the attribute "NROWS" */
- has_attr = H5LT_find_attribute( did, "NROWS" );
-
- /* It exists, get it */
- if(has_attr == 1 )
- {
- /* Get the attribute */
- if(H5LTget_attribute(loc_id,dset_name,"NROWS",H5T_NATIVE_LLONG,n) < 0)
- return -1;
-
- /**nrecords = *n;*/
- *nrecords = n[0];
- }
- else
- {
- /* Get the dataspace handle */
- if((sid = H5Dget_space( did )) < 0)
- goto out;
-
- /* Get records */
- if(H5Sget_simple_extent_dims( sid, dims, NULL) < 0)
- goto out;
-
- /* Terminate access to the dataspace */
- if(H5Sclose( sid ) < 0)
- goto out;
-
- *nrecords = dims[0];
- }
- }/*nrecords*/
-
- /* close */
- if(H5Tclose( tid ) < 0)
- goto out;
- if(H5Dclose( did ) < 0)
- return -1;
-
-return 0;
-
-/* error zone, gracefully close */
+ hid_t tid=-1;
+ hid_t sid=-1;
+ hid_t did=-1;
+ int num_members;
+ hsize_t dims[1];
+
+ /* open the dataset. */
+ if ((did = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
+ return -1;
+
+ /* get the datatype */
+ if ((tid = H5Dget_type( did )) < 0)
+ goto out;
+
+ /* get the number of members */
+ if ((num_members = H5Tget_nmembers( tid )) < 0)
+ goto out;
+
+ /*-------------------------------------------------------------------------
+ * get number of nfields
+ *-------------------------------------------------------------------------
+ */
+
+ if (nfields)
+ {
+ *nfields = num_members;
+ }
+
+
+ /*-------------------------------------------------------------------------
+ * get number of records
+ *-------------------------------------------------------------------------
+ */
+
+ if (nrecords)
+ {
+ /* get the dataspace handle */
+ if ((sid = H5Dget_space( did )) < 0)
+ goto out;
+
+ /* get dimension */
+ if (H5Sget_simple_extent_dims( sid, dims, NULL) < 0)
+ goto out;
+
+ /* terminate access to the dataspace */
+ if (H5Sclose( sid ) < 0)
+ goto out;
+
+ *nrecords = dims[0];
+ }
+
+ /* close */
+ if (H5Tclose( tid ) < 0)
+ goto out;
+ if (H5Dclose( did ) < 0)
+ return -1;
+
+ return 0;
+
+ /* error zone */
out:
- H5E_BEGIN_TRY {
- H5Dclose(did);
- H5Sclose(sid);
- H5Tclose(tid);
- } H5E_END_TRY;
- return -1;
-
+ H5E_BEGIN_TRY
+ {
+ H5Dclose(did);
+ H5Sclose(sid);
+ H5Tclose(tid);
+ } H5E_END_TRY;
+ return -1;
+
}
/*-------------------------------------------------------------------------
@@ -3323,92 +3195,104 @@ herr_t H5TBget_field_info( hid_t loc_id,
size_t *field_offsets,
size_t *type_size )
{
- hid_t did;
- hid_t ftype_id;
- hid_t native_type_id;
- hssize_t nfields;
- char *member_name;
- hid_t member_type_id;
- hid_t nativem_type_id;
- size_t member_size;
- size_t member_offset;
- size_t size;
- hssize_t i;
-
- /* Open the dataset. */
- if((did = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
- goto out;
-
- /* Get the datatype */
- if(( ftype_id = H5Dget_type( did )) < 0)
- goto out;
-
- if ((native_type_id = H5Tget_native_type(ftype_id,H5T_DIR_DEFAULT)) < 0)
- goto out;
-
- /* Get the type size */
- size = H5Tget_size( native_type_id );
-
- if(type_size )
- *type_size = size;
-
- /* Get the number of members */
- if(( nfields = H5Tget_nmembers( ftype_id )) < 0)
- goto out;
-
- /* Iterate tru the members */
- for ( i = 0; i < nfields; i++)
- {
- /* Get the member name */
- member_name = H5Tget_member_name( ftype_id, (unsigned)i );
-
- if(field_names )
- strcpy( field_names[i], member_name );
-
- /* Get the member type */
- if(( member_type_id = H5Tget_member_type( ftype_id,(unsigned) i )) < 0)
- goto out;
- if ((nativem_type_id = H5Tget_native_type(member_type_id,H5T_DIR_DEFAULT)) < 0)
- goto out;
-
- /* Get the member size */
- member_size = H5Tget_size( nativem_type_id );
-
- if(field_sizes )
- field_sizes[i] = member_size;
-
- /* Get the member offset */
- member_offset = H5Tget_member_offset( native_type_id,(unsigned) i );
-
- if(field_offsets )
- field_offsets[i] = member_offset;
-
- /* Close the member type */
- if(H5Tclose( member_type_id ) < 0)
- goto out;
- if(H5Tclose( nativem_type_id ) < 0)
- goto out;
-
- free( member_name );
-
- } /* i */
-
- /* Release the datatype. */
- if(H5Tclose( ftype_id ) < 0)
- return -1;
- if(H5Tclose( native_type_id ) < 0)
- return -1;
-
- /* End access to the dataset */
- if(H5Dclose( did ) < 0)
- return -1;
-
-return 0;
-
+ hid_t did; /* dataset ID */
+ hid_t tid; /* file type ID */
+ hid_t n_tid; /* native type ID */
+ hid_t m_tid; /* member type ID */
+ hid_t nm_tid; /* native member ID */
+ hssize_t nfields;
+ char *member_name;
+ size_t member_size;
+ size_t member_offset;
+ size_t size;
+ hssize_t i;
+
+ /* open the dataset. */
+ if ((did = H5Dopen2(loc_id, dset_name, H5P_DEFAULT)) < 0)
+ goto out;
+
+ /* get the datatype */
+ if (( tid = H5Dget_type( did )) < 0)
+ goto out;
+
+ if ((n_tid = H5Tget_native_type(tid,H5T_DIR_DEFAULT)) < 0)
+ goto out;
+
+ /* get the type size */
+ size = H5Tget_size( n_tid );
+
+ if ( type_size )
+ {
+ *type_size = size;
+ }
+
+ /* get the number of members */
+ if (( nfields = H5Tget_nmembers( tid )) < 0)
+ goto out;
+
+ /* iterate tru the members */
+ for ( i = 0; i < nfields; i++)
+ {
+ /* get the member name */
+ member_name = H5Tget_member_name( tid, (unsigned)i );
+
+ if (field_names )
+ {
+ strcpy( field_names[i], member_name );
+ }
+
+ /* get the member type */
+ if (( m_tid = H5Tget_member_type( tid,(unsigned) i )) < 0)
+ goto out;
+ if ((nm_tid = H5Tget_native_type(m_tid,H5T_DIR_DEFAULT)) < 0)
+ goto out;
+
+ /* get the member size */
+ member_size = H5Tget_size( nm_tid );
+
+ if(field_sizes )
+ {
+ field_sizes[i] = member_size;
+ }
+
+ /* get the member offset */
+ member_offset = H5Tget_member_offset( n_tid,(unsigned) i );
+
+ if(field_offsets )
+ {
+ field_offsets[i] = member_offset;
+ }
+
+ /* close the member types */
+ if (H5Tclose( m_tid ) < 0)
+ goto out;
+ if (H5Tclose( nm_tid ) < 0)
+ goto out;
+
+ free( member_name );
+
+ } /* i */
+
+ /* close */
+ if (H5Tclose( tid ) < 0)
+ goto out;
+ if (H5Tclose( n_tid ) < 0)
+ goto out;
+ if (H5Dclose( did ) < 0)
+ return -1;
+
+ return 0;
+
+ /* error zone */
out:
- H5Dclose( did );
- return -1;
-
+ H5E_BEGIN_TRY
+ {
+ H5Dclose(did);
+ H5Tclose(tid);
+ H5Tclose(n_tid);
+ } H5E_END_TRY;
+ return -1;
+
}
/*-------------------------------------------------------------------------
@@ -3437,7 +3321,7 @@ int H5TB_find_field( const char *field, const char *field_list )
{
const char *start = field_list;
const char *end;
-
+
while ( (end = strstr( start, "," )) != 0 )
{
size_t count = end - start;
@@ -3445,12 +3329,12 @@ int H5TB_find_field( const char *field, const char *field_list )
return 1;
start = end + 1;
}
-
+
if(strcmp( start, field ) == 0 )
return 1;
-
+
return -1;
-
+
}
@@ -3481,50 +3365,50 @@ herr_t H5TB_attach_attributes( const char *table_title,
hsize_t nfields,
hid_t tid )
{
-
- char attr_name[255];
- char *member_name;
- char aux[255];
- hsize_t i;
-
- /* Attach the CLASS attribute */
- if(H5LTset_attribute_string( loc_id, dset_name, "CLASS", TABLE_CLASS ) < 0)
- goto out;
-
- /* Attach the VERSION attribute */
- if(H5LTset_attribute_string( loc_id, dset_name, "VERSION", "2.0" ) < 0)
- goto out;
-
- /* Attach the TITLE attribute */
- if(H5LTset_attribute_string( loc_id, dset_name, "TITLE", table_title ) < 0)
- goto out;
-
- /* Attach the FIELD_ name attribute */
- for ( i = 0; i < nfields; i++)
- {
-
- /* Get the member name */
- member_name = H5Tget_member_name( tid, (unsigned)i );
-
- strcpy( attr_name, "FIELD_" );
- sprintf( aux, "%d", (int)i );
- strcat( attr_name, aux );
- sprintf( aux, "%s", "_NAME" );
- strcat( attr_name, aux );
-
- /* Attach the attribute */
- if(H5LTset_attribute_string( loc_id, dset_name, attr_name, member_name ) < 0)
- goto out;
-
- free( member_name );
-
- }
-
- return 0;
-
+
+ char attr_name[255];
+ char *member_name;
+ char aux[255];
+ hsize_t i;
+
+ /* attach the CLASS attribute */
+ if (H5LTset_attribute_string( loc_id, dset_name, "CLASS", TABLE_CLASS ) < 0)
+ goto out;
+
+ /* attach the VERSION attribute */
+ if (H5LTset_attribute_string( loc_id, dset_name, "VERSION", TABLE_VERSION ) < 0)
+ goto out;
+
+ /* attach the TITLE attribute */
+ if (H5LTset_attribute_string( loc_id, dset_name, "TITLE", table_title ) < 0)
+ goto out;
+
+ /* attach the FIELD_ name attribute */
+ for ( i = 0; i < nfields; i++)
+ {
+
+ /* get the member name */
+ member_name = H5Tget_member_name( tid, (unsigned)i );
+
+ strcpy( attr_name, "FIELD_" );
+ sprintf( aux, "%d", (int)i );
+ strcat( attr_name, aux );
+ sprintf( aux, "%s", "_NAME" );
+ strcat( attr_name, aux );
+
+ /* attach the attribute */
+ if (H5LTset_attribute_string( loc_id, dset_name, attr_name, member_name ) < 0)
+ goto out;
+
+ free( member_name );
+
+ }
+
+ return 0;
+
out:
- return -1;
-
+ return -1;
+
}
/*-------------------------------------------------------------------------
@@ -3553,81 +3437,83 @@ hid_t H5TB_create_type(hid_t loc_id,
const size_t *field_sizes,
hid_t ftype_id)
{
- hid_t mem_type_id;
- hid_t mtype_id=-1;
- hid_t nmtype_id=-1;
- size_t size_native;
- hsize_t nfields;
- char **fnames;
- unsigned i;
-
- /* get the number of fields */
- if (H5TBget_table_info(loc_id,dset_name,&nfields,NULL) < 0)
- return -1;
-
- if ((fnames=malloc(sizeof(char*)*(size_t)nfields))==NULL)
- return -1;
-
- for ( i=0; i<nfields; i++)
- {
- if ((fnames[i]=malloc(sizeof(char)*HLTB_MAX_FIELD_LEN))==NULL) {
- free(fnames);
- return -1;
- }
- }
-
- /* get field info */
- if(H5TBget_field_info(loc_id,dset_name,fnames,NULL,NULL,NULL) < 0)
- goto out;
-
- /* create the memory data type */
- if ((mem_type_id=H5Tcreate(H5T_COMPOUND,type_size)) < 0)
- goto out;
-
- /* get each field ID and adjust its size, if necessary */
- for ( i=0; i<nfields; i++)
- {
- if ((mtype_id=H5Tget_member_type(ftype_id,i)) < 0)
- goto out;
- if ((nmtype_id=H5Tget_native_type(mtype_id,H5T_DIR_DEFAULT)) < 0)
- goto out;
- size_native=H5Tget_size(nmtype_id);
- if (field_sizes[i]!=size_native)
- {
- if (H5Tset_size(nmtype_id,field_sizes[i]) < 0)
- goto out;
- }
- if (H5Tinsert(mem_type_id,fnames[i],field_offset[i],nmtype_id) < 0)
- goto out;
- if (H5Tclose(mtype_id) < 0)
- goto out;
- if (H5Tclose(nmtype_id) < 0)
- goto out;
- }
-
- for ( i=0; i<nfields; i++)
- {
- free (fnames[i]);
- }
- free (fnames);
-
- return mem_type_id;
-
- /* error zone, gracefully close and free */
+ hid_t mem_type_id;
+ hid_t mtype_id=-1;
+ hid_t nmtype_id=-1;
+ size_t size_native;
+ hsize_t nfields;
+ char **fnames;
+ unsigned i;
+
+ /* get the number of fields */
+ if (H5TBget_table_info(loc_id,dset_name,&nfields,NULL) < 0)
+ return -1;
+
+ if ((fnames=malloc(sizeof(char*)*(size_t)nfields))==NULL)
+ return -1;
+
+ for ( i = 0; i < nfields; i++)
+ {
+ if ((fnames[i]=malloc(sizeof(char)*HLTB_MAX_FIELD_LEN))==NULL)
+ {
+ free(fnames);
+ return -1;
+ }
+ }
+
+ /* get field info */
+ if (H5TBget_field_info(loc_id,dset_name,fnames,NULL,NULL,NULL) < 0)
+ goto out;
+
+ /* create the memory data type */
+ if ((mem_type_id=H5Tcreate(H5T_COMPOUND,type_size)) < 0)
+ goto out;
+
+ /* get each field ID and adjust its size, if necessary */
+ for ( i = 0; i < nfields; i++)
+ {
+ if ((mtype_id = H5Tget_member_type(ftype_id,i)) < 0)
+ goto out;
+ if ((nmtype_id = H5Tget_native_type(mtype_id,H5T_DIR_DEFAULT)) < 0)
+ goto out;
+ size_native = H5Tget_size(nmtype_id);
+ if (field_sizes[i]!=size_native)
+ {
+ if (H5Tset_size(nmtype_id,field_sizes[i]) < 0)
+ goto out;
+ }
+ if (H5Tinsert(mem_type_id,fnames[i],field_offset[i],nmtype_id) < 0)
+ goto out;
+ if (H5Tclose(mtype_id) < 0)
+ goto out;
+ if (H5Tclose(nmtype_id) < 0)
+ goto out;
+ }
+
+ for ( i=0; i<nfields; i++)
+ {
+ free (fnames[i]);
+ }
+ free (fnames);
+
+ return mem_type_id;
+
+ /* error zone */
out:
- H5E_BEGIN_TRY {
- H5Tclose(mtype_id);
- H5Tclose(nmtype_id);
- } H5E_END_TRY;
- for ( i=0; i<nfields; i++)
- {
- if (fnames[i])
- free (fnames[i]);
- }
- if (fnames)
- free (fnames);
- return -1;
-
+ H5E_BEGIN_TRY
+ {
+ H5Tclose(mtype_id);
+ H5Tclose(nmtype_id);
+ } H5E_END_TRY;
+ for ( i=0; i<nfields; i++)
+ {
+ if (fnames[i])
+ free (fnames[i]);
+ }
+ if (fnames)
+ free (fnames);
+ return -1;
+
}
@@ -3657,57 +3543,58 @@ out:
*-------------------------------------------------------------------------
*/
herr_t H5TB_common_append_records( hid_t dataset_id,
- hid_t mem_type_id,
- size_t nrecords,
- hsize_t orig_table_size,
- const void * data)
+ hid_t mem_type_id,
+ size_t nrecords,
+ hsize_t orig_table_size,
+ const void * buf)
{
- hsize_t count[1];
- hsize_t offset[1];
- hid_t space_id = H5I_BADID;
- hid_t mem_space_id = H5I_BADID;
- hsize_t dims[1];
- hsize_t mem_dims[1];
-
- /* Extend the dataset */
- dims[0] = nrecords + orig_table_size;
- if(H5Dset_extent(dataset_id, dims) < 0)
- goto out;
-
- /* Create a simple memory data space */
- mem_dims[0] = nrecords;
- if((mem_space_id = H5Screate_simple(1, mem_dims, NULL)) < 0)
- goto out;
-
- /* Get a copy of the new file data space for writing */
- if((space_id = H5Dget_space(dataset_id)) < 0)
- goto out;
-
- /* Define a hyperslab in the dataset */
- offset[0] = orig_table_size;
- count[0] = nrecords;
- if(H5Sselect_hyperslab( space_id, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
- goto out;
-
- /* Write the records */
- if(H5Dwrite( dataset_id, mem_type_id, mem_space_id, space_id, H5P_DEFAULT, data ) < 0)
- goto out;
-
- /* Terminate access to the dataspace */
- if(H5Sclose( mem_space_id ) < 0)
- goto out;
-
- if(H5Sclose( space_id ) < 0)
- goto out;
-
- return 0;
-
+ hsize_t count[1];
+ hsize_t offset[1];
+ hid_t sid = H5I_BADID;
+ hid_t m_sid = H5I_BADID;
+ hsize_t dims[1];
+ hsize_t mem_dims[1];
+
+ /* extend the dataset */
+ dims[0] = nrecords + orig_table_size;
+ if (H5Dset_extent(dataset_id, dims) < 0)
+ goto out;
+
+ /* create a simple memory data space */
+ mem_dims[0] = nrecords;
+ if((m_sid = H5Screate_simple(1, mem_dims, NULL)) < 0)
+ goto out;
+
+ /* get a copy of the new file data space for writing */
+ if ((sid = H5Dget_space(dataset_id)) < 0)
+ goto out;
+
+ /* define a hyperslab in the dataset */
+ offset[0] = orig_table_size;
+ count[0] = nrecords;
+ if (H5Sselect_hyperslab( sid, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
+ goto out;
+
+ /* write the records */
+ if (H5Dwrite( dataset_id, mem_type_id, m_sid, sid, H5P_DEFAULT, buf ) < 0)
+ goto out;
+
+ /* close */
+ if (H5Sclose( m_sid ) < 0)
+ goto out;
+ if (H5Sclose( sid ) < 0)
+ goto out;
+
+ return 0;
+
out:
- H5E_BEGIN_TRY
- H5Sclose(mem_space_id);
- H5Sclose(space_id);
- H5E_END_TRY
- return -1;
+ H5E_BEGIN_TRY
+ {
+ H5Sclose(m_sid);
+ H5Sclose(sid);
+ }
+ H5E_END_TRY;
+ return -1;
}
@@ -3731,54 +3618,54 @@ out:
*-------------------------------------------------------------------------
*/
herr_t H5TB_common_read_records( hid_t dataset_id,
- hid_t mem_type_id,
- hsize_t start,
- size_t nrecords,
- hsize_t table_size,
- void *data)
+ hid_t mem_type_id,
+ hsize_t start,
+ size_t nrecords,
+ hsize_t table_size,
+ void *buf)
{
- hsize_t count[1];
- hsize_t offset[1];
- hid_t space_id = H5I_BADID;
- hid_t mem_space_id = H5I_BADID;
- hsize_t mem_size[1];
-
- /* Make sure the read request is in bounds */
- if(start + nrecords > table_size )
- goto out;
-
- /* Get the dataspace handle */
- if((space_id = H5Dget_space( dataset_id )) < 0)
- goto out;
-
- /* Define a hyperslab in the dataset of the size of the records */
- offset[0] = start;
- count[0] = nrecords;
- if(H5Sselect_hyperslab( space_id, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
- goto out;
-
- /* Create a memory dataspace handle */
- mem_size[0] = count[0];
- if ((mem_space_id = H5Screate_simple( 1, mem_size, NULL )) < 0)
- goto out;
- if ((H5Dread( dataset_id, mem_type_id, mem_space_id, space_id, H5P_DEFAULT, data)) < 0)
- goto out;
-
- /* Terminate access to the memory dataspace */
- if(H5Sclose( mem_space_id ) < 0)
- goto out;
-
- /* Terminate access to the dataspace */
- if(H5Sclose( space_id ) < 0)
- goto out;
-
- return 0;
-
+ hsize_t count[1];
+ hsize_t offset[1];
+ hid_t sid = H5I_BADID;
+ hid_t m_sid = H5I_BADID;
+ hsize_t mem_size[1];
+
+ /* make sure the read request is in bounds */
+ if (start + nrecords > table_size )
+ goto out;
+
+ /* get the dataspace handle */
+ if ((sid = H5Dget_space( dataset_id )) < 0)
+ goto out;
+
+ /* define a hyperslab in the dataset of the size of the records */
+ offset[0] = start;
+ count[0] = nrecords;
+ if (H5Sselect_hyperslab( sid, H5S_SELECT_SET, offset, NULL, count, NULL) < 0)
+ goto out;
+
+ /* create a memory dataspace handle */
+ mem_size[0] = count[0];
+ if ((m_sid = H5Screate_simple( 1, mem_size, NULL )) < 0)
+ goto out;
+ if ((H5Dread( dataset_id, mem_type_id, m_sid, sid, H5P_DEFAULT, buf)) < 0)
+ goto out;
+
+ /* close */
+ if (H5Sclose( m_sid ) < 0)
+ goto out;
+ if (H5Sclose( sid ) < 0)
+ goto out;
+
+ return 0;
+
out:
- H5E_BEGIN_TRY
- H5Sclose(space_id);
- H5Sclose(mem_space_id);
- H5E_END_TRY
- return -1;
+ H5E_BEGIN_TRY
+ {
+ H5Sclose(sid);
+ H5Sclose(m_sid);
+ }
+ H5E_END_TRY;
+ return -1;
}
diff --git a/hl/src/H5TBprivate.h b/hl/src/H5TBprivate.h
index d4e5635..e2b668d 100644
--- a/hl/src/H5TBprivate.h
+++ b/hl/src/H5TBprivate.h
@@ -24,6 +24,7 @@
#define TABLE_CLASS "TABLE"
+#define TABLE_VERSION "3.0"
#define HLTB_MAX_FIELD_LEN 255
/*-------------------------------------------------------------------------
diff --git a/hl/src/H5TBpublic.h b/hl/src/H5TBpublic.h
index 143ceeb..4dd17bb 100644
--- a/hl/src/H5TBpublic.h
+++ b/hl/src/H5TBpublic.h
@@ -41,7 +41,7 @@ H5_HLDLL herr_t H5TBmake_table( const char *table_title,
hsize_t chunk_size,
void *fill_data,
int compress,
- const void *data );
+ const void *buf );
/*-------------------------------------------------------------------------
@@ -57,7 +57,7 @@ H5_HLDLL herr_t H5TBappend_records( hid_t loc_id,
size_t type_size,
const size_t *field_offset,
const size_t *dst_sizes,
- const void *data );
+ const void *buf );
H5_HLDLL herr_t H5TBwrite_records( hid_t loc_id,
const char *dset_name,
@@ -66,7 +66,7 @@ H5_HLDLL herr_t H5TBwrite_records( hid_t loc_id,
size_t type_size,
const size_t *field_offset,
const size_t *dst_sizes,
- const void *data );
+ const void *buf );
H5_HLDLL herr_t H5TBwrite_fields_name( hid_t loc_id,
@@ -77,7 +77,7 @@ H5_HLDLL herr_t H5TBwrite_fields_name( hid_t loc_id,
size_t type_size,
const size_t *field_offset,
const size_t *dst_sizes,
- const void *data );
+ const void *buf );
H5_HLDLL herr_t H5TBwrite_fields_index( hid_t loc_id,
const char *dset_name,
@@ -88,7 +88,7 @@ H5_HLDLL herr_t H5TBwrite_fields_index( hid_t loc_id,
size_t type_size,
const size_t *field_offset,
const size_t *dst_sizes,
- const void *data );
+ const void *buf );
/*-------------------------------------------------------------------------
@@ -116,7 +116,7 @@ H5_HLDLL herr_t H5TBread_fields_name( hid_t loc_id,
size_t type_size,
const size_t *field_offset,
const size_t *dst_sizes,
- void *data );
+ void *buf );
H5_HLDLL herr_t H5TBread_fields_index( hid_t loc_id,
const char *dset_name,
@@ -127,7 +127,7 @@ H5_HLDLL herr_t H5TBread_fields_index( hid_t loc_id,
size_t type_size,
const size_t *field_offset,
const size_t *dst_sizes,
- void *data );
+ void *buf );
H5_HLDLL herr_t H5TBread_records( hid_t loc_id,
@@ -137,7 +137,7 @@ H5_HLDLL herr_t H5TBread_records( hid_t loc_id,
size_t type_size,
const size_t *dst_offset,
const size_t *dst_sizes,
- void *data );
+ void *buf );
/*-------------------------------------------------------------------------
*
@@ -181,7 +181,7 @@ H5_HLDLL herr_t H5TBinsert_record( hid_t loc_id,
size_t dst_size,
const size_t *dst_offset,
const size_t *dst_sizes,
- void *data );
+ void *buf );
H5_HLDLL herr_t H5TBadd_records_from( hid_t loc_id,
const char *dset_name1,
@@ -202,7 +202,7 @@ H5_HLDLL herr_t H5TBinsert_field( hid_t loc_id,
hid_t field_type,
hsize_t position,
const void *fill_data,
- const void *data );
+ const void *buf );
H5_HLDLL herr_t H5TBdelete_field( hid_t loc_id,
const char *dset_name,