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-rw-r--r--java/examples/groups/CMakeLists.txt144
-rw-r--r--java/examples/groups/H5Ex_G_Compact.java261
-rw-r--r--java/examples/groups/H5Ex_G_Corder.java118
-rw-r--r--java/examples/groups/H5Ex_G_Create.java88
-rw-r--r--java/examples/groups/H5Ex_G_Intermediate.java126
-rw-r--r--java/examples/groups/H5Ex_G_Iterate.java111
-rw-r--r--java/examples/groups/H5Ex_G_Phase.java235
-rw-r--r--java/examples/groups/H5Ex_G_Traverse.java167
-rw-r--r--java/examples/groups/H5Ex_G_Visit.java154
-rw-r--r--java/examples/groups/JavaGroupExample.sh.in381
-rw-r--r--java/examples/groups/Makefile.am65
-rw-r--r--java/examples/groups/h5ex_g_iterate.h5bin2928 -> 0 bytes
-rw-r--r--java/examples/groups/h5ex_g_visit.h5bin6312 -> 0 bytes
13 files changed, 0 insertions, 1850 deletions
diff --git a/java/examples/groups/CMakeLists.txt b/java/examples/groups/CMakeLists.txt
deleted file mode 100644
index fc9eb94..0000000
--- a/java/examples/groups/CMakeLists.txt
+++ /dev/null
@@ -1,144 +0,0 @@
-cmake_minimum_required (VERSION 3.18)
-project (HDFJAVA_EXAMPLES_GROUPS Java)
-
-set (CMAKE_VERBOSE_MAKEFILE 1)
-
-set (HDF_JAVA_EXAMPLES
- H5Ex_G_Create
- H5Ex_G_Iterate
- H5Ex_G_Compact
- H5Ex_G_Corder
- H5Ex_G_Intermediate
- H5Ex_G_Phase
- H5Ex_G_Visit
-)
-
-if (WIN32)
- set (CMAKE_JAVA_INCLUDE_FLAG_SEP ";")
-else ()
- set (CMAKE_JAVA_INCLUDE_FLAG_SEP ":")
-endif ()
-
-set (CMAKE_JAVA_INCLUDE_PATH "${HDF5_JAVA_JARS}")
-
-set (CMAKE_JAVA_CLASSPATH ".")
-foreach (CMAKE_INCLUDE_PATH ${CMAKE_JAVA_INCLUDE_PATH})
- set (CMAKE_JAVA_CLASSPATH "${CMAKE_JAVA_CLASSPATH}${CMAKE_JAVA_INCLUDE_FLAG_SEP}${CMAKE_INCLUDE_PATH}")
-endforeach ()
-
-foreach (example ${HDF_JAVA_EXAMPLES})
- file (WRITE ${PROJECT_BINARY_DIR}/${example}_Manifest.txt
- "Main-Class: examples.groups.${example}
-"
- )
- add_jar (${example} MANIFEST ${PROJECT_BINARY_DIR}/${example}_Manifest.txt ${example}.java)
- get_target_property (${example}_JAR_FILE ${example} JAR_FILE)
-# install_jar (${example} ${HJAVA_INSTALL_DATA_DIR}/examples examples)
- get_target_property (${example}_CLASSPATH ${example} CLASSDIR)
- add_dependencies (${example} ${HDF5_JAVA_HDF5_LIB_TARGET})
-
- #-----------------------------------------------------------------------------
- # Add Target to clang-format
- #-----------------------------------------------------------------------------
- if (HDF5_ENABLE_FORMATTERS)
- clang_format (HDF5_JAVA_${example}_SRC_FORMAT ${example}.java)
- endif ()
-endforeach ()
-
-set (CMAKE_JAVA_INCLUDE_PATH "${HDF5_JAVA_JARS};${HDF5_JAVA_LOGGING_JAR};${HDF5_JAVA_LOGGING_NOP_JAR}")
-
-set (CMAKE_JAVA_CLASSPATH ".")
-foreach (HDFJAVA_JAR ${CMAKE_JAVA_INCLUDE_PATH})
- set (CMAKE_JAVA_CLASSPATH "${CMAKE_JAVA_CLASSPATH}${CMAKE_JAVA_INCLUDE_FLAG_SEP}${HDFJAVA_JAR}")
-endforeach ()
-
-set (HDF_JAVA_TEST_FILES
- h5ex_g_iterate.h5
- h5ex_g_visit.h5
-)
-
-foreach (h5_file ${HDF_JAVA_TEST_FILES})
- HDFTEST_COPY_FILE("${PROJECT_SOURCE_DIR}/${h5_file}" "${PROJECT_BINARY_DIR}/${h5_file}" "H5Ex_G_Visit_files")
-endforeach ()
-add_custom_target(H5Ex_G_Visit_files ALL COMMENT "Copying files needed by H5Ex_G_Visit tests" DEPENDS ${H5Ex_G_Visit_files_list})
-
-if (BUILD_TESTING AND HDF5_TEST_EXAMPLES AND HDF5_TEST_SERIAL)
- get_property (target_name TARGET ${HDF5_JAVA_JNI_LIB_TARGET} PROPERTY OUTPUT_NAME)
- set (CMD_ARGS "-Dhdf.hdf5lib.H5.loadLibraryName=${target_name}$<$<OR:$<CONFIG:Debug>,$<CONFIG:Developer>>:${CMAKE_DEBUG_POSTFIX}>;")
-
- set (last_test "")
- foreach (example ${HDF_JAVA_EXAMPLES})
- if (NOT example STREQUAL "H5Ex_G_Iterate" AND NOT example STREQUAL "H5Ex_G_Visit")
- if (example STREQUAL "H5Ex_G_Compact")
- add_test (
- NAME JAVA_groups-${example}-clear-objects
- COMMAND ${CMAKE_COMMAND} -E remove
- ${HDFJAVA_EXAMPLES_BINARY_DIR}/${example}1.h5
- ${HDFJAVA_EXAMPLES_BINARY_DIR}/${example}2.h5
- )
- else ()
- add_test (
- NAME JAVA_groups-${example}-clear-objects
- COMMAND ${CMAKE_COMMAND} -E remove
- ${HDFJAVA_EXAMPLES_BINARY_DIR}/${example}.h5
- )
- endif ()
- else ()
- add_test (
- NAME JAVA_groups-${example}-clear-objects
- COMMAND ${CMAKE_COMMAND} -E echo "${HDFJAVA_EXAMPLES_BINARY_DIR}/${example}.h5 exists"
- )
- endif ()
- if (last_test)
- set_tests_properties (JAVA_groups-${example}-clear-objects PROPERTIES DEPENDS ${last_test})
- endif ()
-
- add_test (
- NAME JAVA_groups-${example}-copy-objects
- COMMAND ${CMAKE_COMMAND} -E copy_if_different
- ${HDFJAVA_EXAMPLES_SOURCE_DIR}/testfiles/examples.groups.${example}.txt
- ${HDFJAVA_EXAMPLES_GROUPS_BINARY_DIR}/${example}.txt
- )
- set_tests_properties (JAVA_groups-${example}-copy-objects PROPERTIES DEPENDS JAVA_groups-${example}-clear-objects)
- add_test (
- NAME JAVA_groups-${example}
- COMMAND "${CMAKE_COMMAND}"
- -D "TEST_TESTER=${CMAKE_Java_RUNTIME};${CMAKE_Java_RUNTIME_FLAGS}"
- -D "TEST_PROGRAM=examples.groups.${example}"
- -D "TEST_ARGS:STRING=${CMD_ARGS}"
- -D "TEST_CLASSPATH:STRING=${CMAKE_JAVA_CLASSPATH}${CMAKE_JAVA_INCLUDE_FLAG_SEP}${${example}_JAR_FILE}"
- -D "TEST_LIBRARY_DIRECTORY=${CMAKE_TEST_OUTPUT_DIRECTORY}"
- -D "TEST_FOLDER=${HDFJAVA_EXAMPLES_BINARY_DIR}"
- -D "TEST_OUTPUT=groups/${example}.out"
- -D "TEST_EXPECT=0"
- -D "TEST_REFERENCE=groups/${example}.txt"
- -P "${HDF_RESOURCES_DIR}/jrunTest.cmake"
- )
- set_tests_properties (JAVA_groups-${example} PROPERTIES
- DEPENDS JAVA_groups-${example}-copy-objects
- )
-
- if (NOT example STREQUAL "H5Ex_G_Iterate" AND NOT example STREQUAL "H5Ex_G_Visit")
- if (example STREQUAL "H5Ex_G_Compact")
- add_test (
- NAME JAVA_groups-${example}-clean-objects
- COMMAND ${CMAKE_COMMAND} -E remove
- ${HDFJAVA_EXAMPLES_BINARY_DIR}/${example}1.h5
- ${HDFJAVA_EXAMPLES_BINARY_DIR}/${example}2.h5
- )
- else ()
- add_test (
- NAME JAVA_groups-${example}-clean-objects
- COMMAND ${CMAKE_COMMAND} -E remove
- ${HDFJAVA_EXAMPLES_BINARY_DIR}/${example}.h5
- )
- endif ()
- set_tests_properties (JAVA_groups-${example}-clean-objects PROPERTIES
- DEPENDS JAVA_groups-${example}
- )
- set (last_test "JAVA_groups-${example}-clean-objects")
- else ()
- set (last_test "JAVA_groups-${example}")
- endif ()
- endforeach ()
-endif ()
diff --git a/java/examples/groups/H5Ex_G_Compact.java b/java/examples/groups/H5Ex_G_Compact.java
deleted file mode 100644
index 2c6535a..0000000
--- a/java/examples/groups/H5Ex_G_Compact.java
+++ /dev/null
@@ -1,261 +0,0 @@
-/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- * Copyright by The HDF Group. *
- * All rights reserved. *
- * *
- * This file is part of HDF5. The full HDF5 copyright notice, including *
- * terms governing use, modification, and redistribution, is contained in *
- * the COPYING file, which can be found at the root of the source code *
- * distribution tree, or in https://www.hdfgroup.org/licenses. *
- * If you do not have access to either file, you may request a copy from *
- * help@hdfgroup.org. *
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-
-/************************************************************
- Creating a file and print the storage layout.
- ************************************************************/
-
-package examples.groups;
-
-import java.util.EnumSet;
-import java.util.HashMap;
-import java.util.Map;
-
-import hdf.hdf5lib.H5;
-import hdf.hdf5lib.HDF5Constants;
-import hdf.hdf5lib.structs.H5G_info_t;
-
-public class H5Ex_G_Compact {
-
- private static final String FILE1 = "H5Ex_G_Compact1.h5";
- private static final String FILE2 = "H5Ex_G_Compact2.h5";
- private static final String GROUP = "G1";
-
- enum H5G_storage {
- H5G_STORAGE_TYPE_UNKNOWN(-1),
- H5G_STORAGE_TYPE_SYMBOL_TABLE(0),
- H5G_STORAGE_TYPE_COMPACT(1),
- H5G_STORAGE_TYPE_DENSE(2);
-
- private static final Map<Integer, H5G_storage> lookup = new HashMap<Integer, H5G_storage>();
-
- static
- {
- for (H5G_storage s : EnumSet.allOf(H5G_storage.class))
- lookup.put(s.getCode(), s);
- }
-
- private int code;
-
- H5G_storage(int layout_type) { this.code = layout_type; }
-
- public int getCode() { return this.code; }
-
- public static H5G_storage get(int code) { return lookup.get(code); }
- }
-
- public static void CreateGroup()
- {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long group_id = HDF5Constants.H5I_INVALID_HID;
- long fapl_id = HDF5Constants.H5I_INVALID_HID;
- H5G_info_t ginfo;
- long size;
-
- // Create file 1. This file will use original format groups.
- try {
- file_id = H5.H5Fcreate(FILE1, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
- // Create a group in the file1.
- try {
- if (file_id >= 0)
- group_id = H5.H5Gcreate(file_id, GROUP, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Obtain the group info and print the group storage type.
- try {
- if (group_id >= 0) {
- ginfo = H5.H5Gget_info(group_id);
- System.out.print("Group storage type for " + FILE1 + " is: ");
- switch (H5G_storage.get(ginfo.storage_type)) {
- case H5G_STORAGE_TYPE_COMPACT:
- System.out.println("H5G_STORAGE_TYPE_COMPACT"); // New compact format
- break;
- case H5G_STORAGE_TYPE_DENSE:
- System.out.println("H5G_STORAGE_TYPE_DENSE"); // New dense (indexed) format
- break;
- case H5G_STORAGE_TYPE_SYMBOL_TABLE:
- System.out.println("H5G_STORAGE_TYPE_SYMBOL_TABLE"); // Original format
- break;
- case H5G_STORAGE_TYPE_UNKNOWN:
- System.out.println("H5G_STORAGE_TYPE_UNKNOWN");
- break;
- default:
- System.out.println("Storage Type Invalid");
- break;
- }
- }
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Close the group.
- try {
- if (group_id >= 0)
- H5.H5Gclose(group_id);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // close the file 1.
- try {
- if (file_id >= 0)
- H5.H5Fclose(file_id);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Re-open file 1. Need to get the correct file size.
- try {
- file_id = H5.H5Fopen(FILE1, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Obtain and print the file size.
- try {
- if (file_id >= 0) {
- size = H5.H5Fget_filesize(file_id);
- System.out.println("File size for " + FILE1 + " is: " + size + " bytes");
- }
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Close FILE1.
- try {
- if (file_id >= 0)
- H5.H5Fclose(file_id);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Set file access property list to allow the latest file format.
- // This will allow the library to create new compact format groups.
- try {
- fapl_id = H5.H5Pcreate(HDF5Constants.H5P_FILE_ACCESS);
- if (fapl_id >= 0)
- H5.H5Pset_libver_bounds(fapl_id, HDF5Constants.H5F_LIBVER_LATEST,
- HDF5Constants.H5F_LIBVER_LATEST);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
- System.out.println();
- // Create file 2 using the new file access property list.
- try {
- file_id = H5.H5Fcreate(FILE2, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, fapl_id);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
- // Create group in file2.
- try {
- if (file_id >= 0)
- group_id = H5.H5Gcreate(file_id, GROUP, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Obtain the group info and print the group storage type.
- try {
- if (group_id >= 0) {
- ginfo = H5.H5Gget_info(group_id);
- System.out.print("Group storage type for " + FILE2 + " is: ");
- switch (H5G_storage.get(ginfo.storage_type)) {
- case H5G_STORAGE_TYPE_COMPACT:
- System.out.println("H5G_STORAGE_TYPE_COMPACT"); // New compact format
- break;
- case H5G_STORAGE_TYPE_DENSE:
- System.out.println("H5G_STORAGE_TYPE_DENSE"); // New dense (indexed) format
- break;
- case H5G_STORAGE_TYPE_SYMBOL_TABLE:
- System.out.println("H5G_STORAGE_TYPE_SYMBOL_TABLE"); // Original format
- break;
- case H5G_STORAGE_TYPE_UNKNOWN:
- System.out.println("H5G_STORAGE_TYPE_UNKNOWN");
- break;
- default:
- System.out.println("Storage Type Invalid");
- break;
- }
- }
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Close the group.
- try {
- if (group_id >= 0)
- H5.H5Gclose(group_id);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // close the file 2.
- try {
- if (file_id >= 0)
- H5.H5Fclose(file_id);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Re-open file 2. Needed to get the correct file size.
- try {
- file_id = H5.H5Fopen(FILE2, HDF5Constants.H5F_ACC_RDONLY, fapl_id);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Obtain and print the file size.
- try {
- if (file_id >= 0) {
- size = H5.H5Fget_filesize(file_id);
- System.out.println("File size for " + FILE2 + " is: " + size + " bytes");
- }
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Close FILE2.
- try {
- if (file_id >= 0)
- H5.H5Fclose(file_id);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
- }
-
- public static void main(String[] args) { H5Ex_G_Compact.CreateGroup(); }
-}
diff --git a/java/examples/groups/H5Ex_G_Corder.java b/java/examples/groups/H5Ex_G_Corder.java
deleted file mode 100644
index 79bbad6..0000000
--- a/java/examples/groups/H5Ex_G_Corder.java
+++ /dev/null
@@ -1,118 +0,0 @@
-/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- * Copyright by The HDF Group. *
- * All rights reserved. *
- * *
- * This file is part of HDF5. The full HDF5 copyright notice, including *
- * terms governing use, modification, and redistribution, is contained in *
- * the COPYING file, which can be found at the root of the source code *
- * distribution tree, or in https://www.hdfgroup.org/licenses. *
- * If you do not have access to either file, you may request a copy from *
- * help@hdfgroup.org. *
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-/************************************************************
- Creating a file with creation properties and traverse the
- groups in alphabetical and creation order.
- ************************************************************/
-
-package examples.groups;
-
-import hdf.hdf5lib.H5;
-import hdf.hdf5lib.HDF5Constants;
-import hdf.hdf5lib.structs.H5G_info_t;
-
-public class H5Ex_G_Corder {
- private static String FILE = "H5Ex_G_Corder.h5";
-
- private static void CreateGroup() throws Exception
- {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long group_id = HDF5Constants.H5I_INVALID_HID;
- long subgroup_id = HDF5Constants.H5I_INVALID_HID;
- long gcpl_id = HDF5Constants.H5I_INVALID_HID;
- int status;
- H5G_info_t ginfo;
- int i;
- String name;
-
- try {
- // Create a new file using default properties.
- file_id = H5.H5Fcreate(FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
-
- // Create group creation property list and enable link creation order tracking.
- gcpl_id = H5.H5Pcreate(HDF5Constants.H5P_GROUP_CREATE);
- status = H5.H5Pset_link_creation_order(gcpl_id, HDF5Constants.H5P_CRT_ORDER_TRACKED +
- HDF5Constants.H5P_CRT_ORDER_INDEXED);
-
- // Create primary group using the property list.
- if (status >= 0)
- group_id = H5.H5Gcreate(file_id, "index_group", HDF5Constants.H5P_DEFAULT, gcpl_id,
- HDF5Constants.H5P_DEFAULT);
-
- try {
- /*
- * Create subgroups in the primary group. These will be tracked by creation order. Note that
- * these groups do not have to have the creation order tracking property set.
- */
- subgroup_id = H5.H5Gcreate(group_id, "H", HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
- status = H5.H5Gclose(subgroup_id);
- subgroup_id = H5.H5Gcreate(group_id, "D", HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
- status = H5.H5Gclose(subgroup_id);
- subgroup_id = H5.H5Gcreate(group_id, "F", HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
- status = H5.H5Gclose(subgroup_id);
- subgroup_id = H5.H5Gcreate(group_id, "5", HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
- status = H5.H5Gclose(subgroup_id);
-
- // Get group info.
- ginfo = H5.H5Gget_info(group_id);
-
- // Traverse links in the primary group using alphabetical indices (H5_INDEX_NAME).
- System.out.println("Traversing group using alphabetical indices:");
- for (i = 0; i < ginfo.nlinks; i++) {
- // Retrieve the name of the ith link in a group
- name = H5.H5Lget_name_by_idx(group_id, ".", HDF5Constants.H5_INDEX_NAME,
- HDF5Constants.H5_ITER_INC, i, HDF5Constants.H5P_DEFAULT);
- System.out.println("Index " + i + ": " + name);
- }
-
- // Traverse links in the primary group by creation order (H5_INDEX_CRT_ORDER).
- System.out.println("Traversing group using creation order indices:");
- for (i = 0; i < ginfo.nlinks; i++) {
- // Retrieve the name of the ith link in a group
- name = H5.H5Lget_name_by_idx(group_id, ".", HDF5Constants.H5_INDEX_CRT_ORDER,
- HDF5Constants.H5_ITER_INC, i, HDF5Constants.H5P_DEFAULT);
- System.out.println("Index " + i + ": " + name);
- }
- }
- catch (Exception e) {
- e.printStackTrace();
- }
- }
- catch (Exception e) {
- e.printStackTrace();
- }
- finally {
- // Close and release resources.
- if (gcpl_id >= 0)
- H5.H5Pclose(gcpl_id);
- if (group_id >= 0)
- H5.H5Gclose(group_id);
- if (file_id >= 0)
- H5.H5Fclose(file_id);
- }
- }
-
- public static void main(String[] args)
- {
- try {
- H5Ex_G_Corder.CreateGroup();
- }
- catch (Exception ex) {
- ex.printStackTrace();
- }
- }
-}
diff --git a/java/examples/groups/H5Ex_G_Create.java b/java/examples/groups/H5Ex_G_Create.java
deleted file mode 100644
index 51804b9..0000000
--- a/java/examples/groups/H5Ex_G_Create.java
+++ /dev/null
@@ -1,88 +0,0 @@
-/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- * Copyright by The HDF Group. *
- * All rights reserved. *
- * *
- * This file is part of HDF5. The full HDF5 copyright notice, including *
- * terms governing use, modification, and redistribution, is contained in *
- * the COPYING file, which can be found at the root of the source code *
- * distribution tree, or in https://www.hdfgroup.org/licenses. *
- * If you do not have access to either file, you may request a copy from *
- * help@hdfgroup.org. *
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-
-/************************************************************
- This example shows how to create, open, and close a group.
- ************************************************************/
-
-package examples.groups;
-
-import hdf.hdf5lib.H5;
-import hdf.hdf5lib.HDF5Constants;
-
-public class H5Ex_G_Create {
- private static String FILENAME = "H5Ex_G_Create.h5";
- private static String GROUPNAME = "G1";
-
- private static void CreateGroup()
- {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long group_id = HDF5Constants.H5I_INVALID_HID;
-
- // Create a new file using default properties.
- try {
- file_id = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Create a group in the file.
- try {
- if (file_id >= 0)
- group_id = H5.H5Gcreate(file_id, "/" + GROUPNAME, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Close the group. The handle "group" can no longer be used.
- try {
- if (group_id >= 0)
- H5.H5Gclose(group_id);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Re-open the group, obtaining a new handle.
- try {
- if (file_id >= 0)
- group_id = H5.H5Gopen(file_id, "/" + GROUPNAME, HDF5Constants.H5P_DEFAULT);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Close the group.
- try {
- if (group_id >= 0)
- H5.H5Gclose(group_id);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Close the file.
- try {
- if (file_id >= 0)
- H5.H5Fclose(file_id);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
- }
-
- public static void main(String[] args) { H5Ex_G_Create.CreateGroup(); }
-}
diff --git a/java/examples/groups/H5Ex_G_Intermediate.java b/java/examples/groups/H5Ex_G_Intermediate.java
deleted file mode 100644
index e638fd0..0000000
--- a/java/examples/groups/H5Ex_G_Intermediate.java
+++ /dev/null
@@ -1,126 +0,0 @@
-/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- * Copyright by The HDF Group. *
- * All rights reserved. *
- * *
- * This file is part of HDF5. The full HDF5 copyright notice, including *
- * terms governing use, modification, and redistribution, is contained in *
- * the COPYING file, which can be found at the root of the source code *
- * distribution tree, or in https://www.hdfgroup.org/licenses. *
- * If you do not have access to either file, you may request a copy from *
- * help@hdfgroup.org. *
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-
-/************************************************************
- This example shows how to create intermediate groups with
- a single call to H5Gcreate.
- ************************************************************/
-package examples.groups;
-
-import java.util.ArrayList;
-
-import hdf.hdf5lib.H5;
-import hdf.hdf5lib.HDF5Constants;
-import hdf.hdf5lib.callbacks.H5O_iterate_opdata_t;
-import hdf.hdf5lib.callbacks.H5O_iterate_t;
-import hdf.hdf5lib.structs.H5O_info_t;
-
-public class H5Ex_G_Intermediate {
-
- private static String FILE = "H5Ex_G_Intermediate.h5";
-
- private void CreateGroup() throws Exception
- {
-
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long group_id = HDF5Constants.H5I_INVALID_HID;
- long gcpl_id = HDF5Constants.H5I_INVALID_HID;
-
- try {
- // Create a new file_id using the default properties.
- file_id = H5.H5Fcreate(FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
-
- // Create group_id creation property list and set it to allow creation of intermediate group_ids.
- gcpl_id = H5.H5Pcreate(HDF5Constants.H5P_LINK_CREATE);
- H5.H5Pset_create_intermediate_group(gcpl_id, true);
-
- /*
- * Create the group_id /G1/G2/G3. Note that /G1 and /G1/G2 do not exist yet. This call would cause
- * an error if we did not use the previously created property list.
- */
- group_id = H5.H5Gcreate(file_id, "/G1/G2/G3", gcpl_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
- // Print all the objects in the file_ids to show that intermediate group_ids have been created.
- System.out.println("Objects in the file_id:");
-
- // H5O_iterate_opdata_t iter_data = null;
- H5O_iterate_opdata_t iter_data = new H5O_iter_data();
- H5O_iterate_t iter_cb = new H5O_iter_callback();
-
- H5.H5Ovisit(file_id, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_NATIVE, iter_cb,
- iter_data);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
- finally {
- // Close and release resources.
- if (gcpl_id >= 0)
- H5.H5Pclose(gcpl_id);
- if (group_id >= 0)
- H5.H5Gclose(group_id);
- if (file_id >= 0)
- H5.H5Fclose(file_id);
- }
- }
-
- public static void main(String[] args)
- {
- try {
- (new H5Ex_G_Intermediate()).CreateGroup();
- }
- catch (Exception ex) {
- ex.printStackTrace();
- }
- }
-
- private class idata {
- public String link_name = null;
- public int link_type = -1;
-
- idata(String name, int type)
- {
- this.link_name = name;
- this.link_type = type;
- }
- }
-
- private class H5O_iter_data implements H5O_iterate_opdata_t {
- public ArrayList<idata> iterdata = new ArrayList<idata>();
- }
-
- private class H5O_iter_callback implements H5O_iterate_t {
- public int callback(long group, String name, H5O_info_t info, H5O_iterate_opdata_t op_data)
- {
- idata id = new idata(name, info.type);
- ((H5O_iter_data)op_data).iterdata.add(id);
-
- System.out.print("/"); /* Print root group in object path */
-
- // Check if the current object is the root group, and if not print the full path name and type.
-
- if (name.charAt(0) == '.') /* Root group, do not print '.' */
- System.out.println(" (Group)");
- else if (info.type == HDF5Constants.H5O_TYPE_GROUP)
- System.out.println(name + " (Group)");
- else if (info.type == HDF5Constants.H5O_TYPE_DATASET)
- System.out.println(name + " (Dataset)");
- else if (info.type == HDF5Constants.H5O_TYPE_NAMED_DATATYPE)
- System.out.println(name + " (Datatype)");
- else
- System.out.println(name + " (Unknown)");
-
- return 0;
- }
- }
-}
diff --git a/java/examples/groups/H5Ex_G_Iterate.java b/java/examples/groups/H5Ex_G_Iterate.java
deleted file mode 100644
index 24cbb0a..0000000
--- a/java/examples/groups/H5Ex_G_Iterate.java
+++ /dev/null
@@ -1,111 +0,0 @@
-/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- * Copyright by The HDF Group. *
- * All rights reserved. *
- * *
- * This file is part of HDF5. The full HDF5 copyright notice, including *
- * terms governing use, modification, and redistribution, is contained in *
- * the COPYING file, which can be found at the root of the source code *
- * distribution tree, or in https://www.hdfgroup.org/licenses. *
- * If you do not have access to either file, you may request a copy from *
- * help@hdfgroup.org. *
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-
-/************************************************************
- This example shows how to iterate over group members using
- H5Gget_obj_info_all.
- ************************************************************/
-package examples.groups;
-
-import java.util.EnumSet;
-import java.util.HashMap;
-import java.util.Map;
-
-import hdf.hdf5lib.H5;
-import hdf.hdf5lib.HDF5Constants;
-import hdf.hdf5lib.structs.H5O_token_t;
-
-public class H5Ex_G_Iterate {
- private static String FILENAME = "groups/h5ex_g_iterate.h5";
- private static String DATASETNAME = "/";
-
- enum H5O_type {
- H5O_TYPE_UNKNOWN(-1), // Unknown object type
- H5O_TYPE_GROUP(0), // Object is a group
- H5O_TYPE_DATASET(1), // Object is a dataset
- H5O_TYPE_NAMED_DATATYPE(2), // Object is a named data type
- H5O_TYPE_NTYPES(3); // Number of different object types
- private static final Map<Integer, H5O_type> lookup = new HashMap<Integer, H5O_type>();
-
- static
- {
- for (H5O_type s : EnumSet.allOf(H5O_type.class))
- lookup.put(s.getCode(), s);
- }
-
- private int code;
-
- H5O_type(int layout_type) { this.code = layout_type; }
-
- public int getCode() { return this.code; }
-
- public static H5O_type get(int code) { return lookup.get(code); }
- }
-
- private static void do_iterate()
- {
- long file_id = HDF5Constants.H5I_INVALID_HID;
-
- // Open a file using default properties.
- try {
- file_id = H5.H5Fopen(FILENAME, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Begin iteration.
- System.out.println("Objects in root group:");
- try {
- if (file_id >= 0) {
- int count = (int)H5.H5Gn_members(file_id, DATASETNAME);
- String[] oname = new String[count];
- int[] otype = new int[count];
- int[] ltype = new int[count];
- H5O_token_t[] otokens = new H5O_token_t[count];
- H5.H5Gget_obj_info_all(file_id, DATASETNAME, oname, otype, ltype, otokens,
- HDF5Constants.H5_INDEX_NAME);
-
- // Get type of the object and display its name and type.
- for (int indx = 0; indx < otype.length; indx++) {
- switch (H5O_type.get(otype[indx])) {
- case H5O_TYPE_GROUP:
- System.out.println(" Group: " + oname[indx]);
- break;
- case H5O_TYPE_DATASET:
- System.out.println(" Dataset: " + oname[indx]);
- break;
- case H5O_TYPE_NAMED_DATATYPE:
- System.out.println(" Datatype: " + oname[indx]);
- break;
- default:
- System.out.println(" Unknown: " + oname[indx]);
- }
- }
- }
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Close the file.
- try {
- if (file_id >= 0)
- H5.H5Fclose(file_id);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
- }
-
- public static void main(String[] args) { H5Ex_G_Iterate.do_iterate(); }
-}
diff --git a/java/examples/groups/H5Ex_G_Phase.java b/java/examples/groups/H5Ex_G_Phase.java
deleted file mode 100644
index 7a3fba3..0000000
--- a/java/examples/groups/H5Ex_G_Phase.java
+++ /dev/null
@@ -1,235 +0,0 @@
-/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- * Copyright by The HDF Group. *
- * All rights reserved. *
- * *
- * This file is part of HDF5. The full HDF5 copyright notice, including *
- * terms governing use, modification, and redistribution, is contained in *
- * the COPYING file, which can be found at the root of the source code *
- * distribution tree, or in https://www.hdfgroup.org/licenses. *
- * If you do not have access to either file, you may request a copy from *
- * help@hdfgroup.org. *
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-
-/************************************************************
- This example shows how to set the conditions for
- conversion between compact and dense (indexed) groups.
- ************************************************************/
-package examples.groups;
-
-import java.util.EnumSet;
-import java.util.HashMap;
-import java.util.Map;
-
-import hdf.hdf5lib.H5;
-import hdf.hdf5lib.HDF5Constants;
-import hdf.hdf5lib.structs.H5G_info_t;
-
-public class H5Ex_G_Phase {
- private static String FILE = "H5Ex_G_Phase.h5";
- private static int MAX_GROUPS = 7;
- private static int MAX_COMPACT = 5;
- private static int MIN_DENSE = 3;
-
- enum H5G_storage {
- H5G_STORAGE_TYPE_UNKNOWN(-1),
- H5G_STORAGE_TYPE_SYMBOL_TABLE(0),
- H5G_STORAGE_TYPE_COMPACT(1),
- H5G_STORAGE_TYPE_DENSE(2);
-
- private static final Map<Integer, H5G_storage> lookup = new HashMap<Integer, H5G_storage>();
-
- static
- {
- for (H5G_storage s : EnumSet.allOf(H5G_storage.class))
- lookup.put(s.getCode(), s);
- }
-
- private int code;
-
- H5G_storage(int layout_type) { this.code = layout_type; }
-
- public int getCode() { return this.code; }
-
- public static H5G_storage get(int code) { return lookup.get(code); }
- }
-
- private static void CreateGroup()
- {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- long group_id = HDF5Constants.H5I_INVALID_HID;
- long subgroup_id = HDF5Constants.H5I_INVALID_HID;
- long fapl_id = HDF5Constants.H5I_INVALID_HID;
- long gcpl_id = HDF5Constants.H5I_INVALID_HID;
- H5G_info_t ginfo;
- String name = "G0"; // Name of subgroup_id
- int i;
-
- // Set file access property list to allow the latest file format.This will allow the library to create
- // new format groups.
- try {
- fapl_id = H5.H5Pcreate(HDF5Constants.H5P_FILE_ACCESS);
- if (fapl_id >= 0)
- H5.H5Pset_libver_bounds(fapl_id, HDF5Constants.H5F_LIBVER_LATEST,
- HDF5Constants.H5F_LIBVER_LATEST);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Create group access property list and set the phase change conditions.
- try {
- gcpl_id = H5.H5Pcreate(HDF5Constants.H5P_GROUP_CREATE);
- if (gcpl_id >= 0)
- H5.H5Pset_link_phase_change(gcpl_id, MAX_COMPACT, MIN_DENSE);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Create a new file using the default properties.
- try {
- if (fapl_id >= 0)
- file_id = H5.H5Fcreate(FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, fapl_id);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Create primary group.
- try {
- if ((file_id >= 0) && (gcpl_id >= 0))
- group_id = H5.H5Gcreate(file_id, name, HDF5Constants.H5P_DEFAULT, gcpl_id,
- HDF5Constants.H5P_DEFAULT);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Add subgroups to "group" one at a time, print the storage type for "group" after each subgroup is
- // created.
- for (i = 1; i <= MAX_GROUPS; i++) {
- // Define the subgroup name and create the subgroup.
- char append = (char)(((char)i) + '0');
- name = name + append; /* G1, G2, G3 etc. */
- try {
- if (group_id >= 0) {
- subgroup_id = H5.H5Gcreate(group_id, name, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
- H5.H5Gclose(subgroup_id);
- }
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Obtain the group info and print the group storage type
- try {
- if (group_id >= 0) {
- ginfo = H5.H5Gget_info(group_id);
- System.out.print(ginfo.nlinks + " Group" + (ginfo.nlinks == 1 ? " " : "s") +
- ": Storage type is ");
- switch (H5G_storage.get(ginfo.storage_type)) {
- case H5G_STORAGE_TYPE_COMPACT:
- System.out.println("H5G_STORAGE_TYPE_COMPACT"); // New compact format
- break;
- case H5G_STORAGE_TYPE_DENSE:
- System.out.println("H5G_STORAGE_TYPE_DENSE"); // New dense (indexed) format
- break;
- case H5G_STORAGE_TYPE_SYMBOL_TABLE:
- System.out.println("H5G_STORAGE_TYPE_SYMBOL_TABLE"); // Original format
- break;
- case H5G_STORAGE_TYPE_UNKNOWN:
- System.out.println("H5G_STORAGE_TYPE_UNKNOWN");
- break;
- default:
- System.out.println("Storage Type Invalid");
- break;
- }
- }
- }
- catch (Exception e) {
- e.printStackTrace();
- }
- }
-
- System.out.println();
-
- // Delete subgroups one at a time, print the storage type for "group" after each subgroup is deleted.
- for (i = MAX_GROUPS; i >= 1; i--) {
- // Define the subgroup name and delete the subgroup.
- try {
- H5.H5Ldelete(group_id, name, HDF5Constants.H5P_DEFAULT);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
- name = name.substring(0, i + 1);
-
- // Obtain the group info and print the group storage type
- try {
- if (group_id >= 0) {
- ginfo = H5.H5Gget_info(group_id);
- System.out.print(ginfo.nlinks + " Group" + (ginfo.nlinks == 1 ? " " : "s") +
- ": Storage type is ");
- switch (H5G_storage.get(ginfo.storage_type)) {
- case H5G_STORAGE_TYPE_COMPACT:
- System.out.println("H5G_STORAGE_TYPE_COMPACT"); // New compact format
- break;
- case H5G_STORAGE_TYPE_DENSE:
- System.out.println("H5G_STORAGE_TYPE_DENSE"); // New dense (indexed) format
- break;
- case H5G_STORAGE_TYPE_SYMBOL_TABLE:
- System.out.println("H5G_STORAGE_TYPE_SYMBOL_TABLE"); // Original format
- break;
- case H5G_STORAGE_TYPE_UNKNOWN:
- System.out.println("H5G_STORAGE_TYPE_UNKNOWN");
- break;
- default:
- System.out.println("Storage Type Invalid");
- break;
- }
- }
- }
- catch (Exception e) {
- e.printStackTrace();
- }
- }
-
- // Close and release resources
- try {
- if (fapl_id >= 0)
- H5.H5Pclose(fapl_id);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- try {
- if (gcpl_id >= 0)
- H5.H5Pclose(gcpl_id);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Close the group
- try {
- if (group_id >= 0)
- H5.H5Gclose(group_id);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Close the file
- try {
- if (file_id >= 0)
- H5.H5Fclose(file_id);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
- }
-
- public static void main(String[] args) { H5Ex_G_Phase.CreateGroup(); }
-}
diff --git a/java/examples/groups/H5Ex_G_Traverse.java b/java/examples/groups/H5Ex_G_Traverse.java
deleted file mode 100644
index 61a269c..0000000
--- a/java/examples/groups/H5Ex_G_Traverse.java
+++ /dev/null
@@ -1,167 +0,0 @@
-/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- * Copyright by The HDF Group. *
- * All rights reserved. *
- * *
- * This file is part of HDF5. The full HDF5 copyright notice, including *
- * terms governing use, modification, and redistribution, is contained in *
- * the COPYING file, which can be found at the root of the source code *
- * distribution tree, or in https://www.hdfgroup.org/licenses. *
- * If you do not have access to either file, you may request a copy from *
- * help@hdfgroup.org. *
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-
-/************************************************************
-This example shows a way to recursively traverse the file
-using H5Literate. The method shown here guarantees that
-the recursion will not enter an infinite loop, but does
-not prevent objects from being visited more than once.
-The program prints the directory structure of the file
-specified in FILE. The default file used by this example
-implements the structure described in the User's Guide,
-chapter 4, figure 26.
- ************************************************************/
-package examples.groups;
-
-import hdf.hdf5lib.H5;
-import hdf.hdf5lib.HDF5Constants;
-import hdf.hdf5lib.callbacks.H5L_iterate_opdata_t;
-import hdf.hdf5lib.callbacks.H5L_iterate_t;
-import hdf.hdf5lib.structs.H5L_info_t;
-import hdf.hdf5lib.structs.H5O_info_t;
-
-import examples.groups.H5Ex_G_Iterate.H5O_type;
-
-class opdata implements H5L_iterate_opdata_t {
- int recurs;
- opdata prev;
- H5O_token_t obj_token;
-}
-
-public class H5Ex_G_Traverse {
-
- private static String FILE = "h5ex_g_traverse.h5";
- public static H5L_iterate_t iter_cb = new H5L_iter_callbackT();
-
- private static void OpenGroup()
- {
- long file_id = HDF5Constants.H5I_INVALID_HID;
- H5O_info_t infobuf;
- opdata od = new opdata();
-
- // Open file and initialize the operator data structure.
- try {
- file_id = H5.H5Fopen(FILE, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
- if (file_id >= 0) {
- infobuf = H5.H5Oget_info(file_id);
- od.recurs = 0;
- od.prev = null;
- od.obj_token = infobuf.token;
- }
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Print the root group and formatting, begin iteration.
- try {
- System.out.println("/ {");
- // H5L_iterate_t iter_cb = new H5L_iter_callbackT();
- H5.H5Literate(file_id, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_NATIVE, 0L, iter_cb,
- od);
- System.out.println("}");
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- // Close and release resources.
- try {
- if (file_id >= 0)
- H5.H5Fclose(file_id);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
- }
-
- public static void main(String[] args) { H5Ex_G_Traverse.OpenGroup(); }
-}
-
-class H5L_iter_callbackT implements H5L_iterate_t {
- public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data)
- {
-
- H5O_info_t infobuf;
- int return_val = 0;
- opdata od = (opdata)op_data; // Type conversion
- int spaces = 2 * (od.recurs + 1); // Number of white spaces to prepend to output.
-
- // Get type of the object and display its name and type.
- // The name of the object is passed to this function by the Library.
- try {
- infobuf = H5.H5Oget_info_by_name(group, name, HDF5Constants.H5P_DEFAULT);
-
- for (int i = 0; i < spaces; i++)
- System.out.print(" "); // Format output.
- switch (H5O_type.get(infobuf.type)) {
- case H5O_TYPE_GROUP:
- System.out.println("Group: " + name + " { ");
- // Check group object token against linked list of operator
- // data structures. We will always run the check, as the
- // reference count cannot be relied upon if there are
- // symbolic links, and H5Oget_info_by_name always follows
- // symbolic links. Alternatively we could use H5Lget_info
- // and never recurse on groups discovered by symbolic
- // links, however it could still fail if an object's
- // reference count was manually manipulated with
- // H5Odecr_refcount.
- if (group_check(od, infobuf.token)) {
- for (int i = 0; i < spaces; i++)
- System.out.print(" ");
- System.out.println(" Warning: Loop detected!");
- }
- else {
- // Initialize new object of type opdata and begin
- // recursive iteration on the discovered
- // group. The new opdata is given a pointer to the
- // current one.
- opdata nextod = new opdata();
- nextod.recurs = od.recurs + 1;
- nextod.prev = od;
- nextod.obj_token = infobuf.token;
- H5L_iterate_t iter_cb2 = new H5L_iter_callbackT();
- return_val = H5.H5Literate_by_name(group, name, HDF5Constants.H5_INDEX_NAME,
- HDF5Constants.H5_ITER_NATIVE, 0L, iter_cb2, nextod,
- HDF5Constants.H5P_DEFAULT);
- }
- for (int i = 0; i < spaces; i++)
- System.out.print(" ");
- System.out.println("}");
- break;
- case H5O_TYPE_DATASET:
- System.out.println("Dataset: " + name);
- break;
- case H5O_TYPE_NAMED_DATATYPE:
- System.out.println("Datatype: " + name);
- break;
- default:
- System.out.println("Unknown: " + name);
- }
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- return return_val;
- }
-
- public boolean group_check(opdata od, H5O_token_t target_token)
- {
- if (od.obj_token.equals(target_token))
- return true; // Object tokens match
- else if (od.recurs == 0)
- return false; // Root group reached with no matches
- else
- return group_check(od.prev, target_token); // Recursively examine the next node
- }
-}
diff --git a/java/examples/groups/H5Ex_G_Visit.java b/java/examples/groups/H5Ex_G_Visit.java
deleted file mode 100644
index 1f2f9a1..0000000
--- a/java/examples/groups/H5Ex_G_Visit.java
+++ /dev/null
@@ -1,154 +0,0 @@
-/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- * Copyright by The HDF Group. *
- * All rights reserved. *
- * *
- * This file is part of HDF5. The full HDF5 copyright notice, including *
- * terms governing use, modification, and redistribution, is contained in *
- * the COPYING file, which can be found at the root of the source code *
- * distribution tree, or in https://www.hdfgroup.org/licenses. *
- * If you do not have access to either file, you may request a copy from *
- * help@hdfgroup.org. *
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-
-/************************************************************
- This example shows how to recursively traverse a file
- using H5Ovisit and H5Lvisit. The program prints all of
- the objects in the file specified in FILE, then prints all
- of the links in that file. The default file used by this
- example implements the structure described in the User
- Guide, chapter 4, figure 26.
- ************************************************************/
-package examples.groups;
-
-import java.util.ArrayList;
-
-import hdf.hdf5lib.H5;
-import hdf.hdf5lib.HDF5Constants;
-import hdf.hdf5lib.callbacks.H5L_iterate_opdata_t;
-import hdf.hdf5lib.callbacks.H5L_iterate_t;
-import hdf.hdf5lib.callbacks.H5O_iterate_opdata_t;
-import hdf.hdf5lib.callbacks.H5O_iterate_t;
-import hdf.hdf5lib.structs.H5L_info_t;
-import hdf.hdf5lib.structs.H5O_info_t;
-
-public class H5Ex_G_Visit {
-
- private static String FILE = "groups/h5ex_g_visit.h5";
-
- public static void main(String[] args)
- {
- try {
- (new H5Ex_G_Visit()).VisitGroup();
- }
- catch (Exception ex) {
- ex.printStackTrace();
- }
- }
-
- private void VisitGroup() throws Exception
- {
-
- long file_id = HDF5Constants.H5I_INVALID_HID;
-
- try {
- // Open file
- file_id = H5.H5Fopen(FILE, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
-
- // Begin iteration using H5Ovisit
- System.out.println("Objects in the file:");
- H5O_iterate_opdata_t iter_data = new H5O_iter_data();
- H5O_iterate_t iter_cb = new H5O_iter_callback();
- H5.H5Ovisit(file_id, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_NATIVE, iter_cb,
- iter_data);
- System.out.println();
- // Repeat the same process using H5Lvisit
- H5L_iterate_opdata_t iter_data2 = new H5L_iter_data();
- H5L_iterate_t iter_cb2 = new H5L_iter_callback();
- System.out.println("Links in the file:");
- H5.H5Lvisit(file_id, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_NATIVE, iter_cb2,
- iter_data2);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
- finally {
- // Close and release resources.
- if (file_id >= 0)
- H5.H5Fclose(file_id);
- }
- }
-
- /************************************************************
- * Operator function for H5Lvisit. This function simply retrieves the info for the object the current link
- *points to, and calls the operator function for H5Ovisit.
- ************************************************************/
-
- private class idata {
- public String link_name = null;
- public int link_type = -1;
-
- idata(String name, int type)
- {
- this.link_name = name;
- this.link_type = type;
- }
- }
-
- private class H5L_iter_data implements H5L_iterate_opdata_t {
- public ArrayList<idata> iterdata = new ArrayList<idata>();
- }
-
- private class H5L_iter_callback implements H5L_iterate_t {
- public int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data)
- {
-
- idata id = new idata(name, info.type);
- ((H5L_iter_data)op_data).iterdata.add(id);
-
- H5O_info_t infobuf;
- int ret = 0;
- try {
- // Get type of the object and display its name and type. The name of the object is passed to
- // this function by the Library.
- infobuf = H5.H5Oget_info_by_name(group, name, HDF5Constants.H5P_DEFAULT);
- H5O_iterate_t iter_cbO = new H5O_iter_callback();
- H5O_iterate_opdata_t iter_dataO = new H5O_iter_data();
- ret = iter_cbO.callback(group, name, infobuf, iter_dataO);
- }
- catch (Exception e) {
- e.printStackTrace();
- }
-
- return ret;
- }
- }
-
- private class H5O_iter_data implements H5O_iterate_opdata_t {
- public ArrayList<idata> iterdata = new ArrayList<idata>();
- }
-
- private class H5O_iter_callback implements H5O_iterate_t {
- public int callback(long group, String name, H5O_info_t info, H5O_iterate_opdata_t op_data)
- {
- idata id = new idata(name, info.type);
- ((H5O_iter_data)op_data).iterdata.add(id);
-
- System.out.print("/"); /* Print root group in object path */
-
- // Check if the current object is the root group, and if not print the full path name and type.
-
- if (name.charAt(0) == '.') /* Root group, do not print '.' */
- System.out.println(" (Group)");
- else if (info.type == HDF5Constants.H5O_TYPE_GROUP)
- System.out.println(name + " (Group)");
- else if (info.type == HDF5Constants.H5O_TYPE_DATASET)
- System.out.println(name + " (Dataset)");
- else if (info.type == HDF5Constants.H5O_TYPE_NAMED_DATATYPE)
- System.out.println(name + " (Datatype)");
- else
- System.out.println(name + " (Unknown)");
-
- return 0;
- }
- }
-}
diff --git a/java/examples/groups/JavaGroupExample.sh.in b/java/examples/groups/JavaGroupExample.sh.in
deleted file mode 100644
index 4773579..0000000
--- a/java/examples/groups/JavaGroupExample.sh.in
+++ /dev/null
@@ -1,381 +0,0 @@
-#! /bin/sh
-#
-# Copyright by The HDF Group.
-# All rights reserved.
-#
-# This file is part of HDF5. The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://www.hdfgroup.org/licenses.
-# If you do not have access to either file, you may request a copy from
-# help@hdfgroup.org.
-#
-
-top_builddir=@top_builddir@
-top_srcdir=@top_srcdir@
-srcdir=@srcdir@
-IS_DARWIN="@H5_IS_DARWIN@"
-
-TESTNAME=EX_Groups
-EXIT_SUCCESS=0
-EXIT_FAILURE=1
-
-# Set up default variable values if not supplied by the user.
-RM='rm -rf'
-CMP='cmp'
-DIFF='diff -c'
-CP='cp'
-DIRNAME='dirname'
-BASENAME='basename'
-LS='ls'
-AWK='awk'
-
-nerrors=0
-
-# where the libs exist
-HDFLIB_HOME="$top_srcdir/java/lib"
-BLDDIR="."
-BLDLIBDIR="$BLDDIR/testlibs"
-BLDITERDIR="./groups"
-HDFTEST_HOME="$top_srcdir/java/examples/groups"
-JARFILE=jar@PACKAGE_TARNAME@-@PACKAGE_VERSION@.jar
-TESTJARFILE=jar@PACKAGE_TARNAME@groups.jar
-test -d $BLDLIBDIR || mkdir -p $BLDLIBDIR
-test -d $BLDITERDIR || mkdir -p $BLDITERDIR
-
-######################################################################
-# library files
-# --------------------------------------------------------------------
-# All the library files copy from source directory to test directory
-# NOTE: Keep this framework to add/remove test files.
-# This list are also used for checking exist.
-# Comment '#' without space can be used.
-# --------------------------------------------------------------------
-LIST_LIBRARY_FILES="
-$top_builddir/src/.libs/libhdf5.*
-$top_builddir/java/src/jni/.libs/libhdf5_java.*
-$top_builddir/java/src/$JARFILE
-"
-LIST_JAR_TESTFILES="
-$HDFLIB_HOME/slf4j-api-2.0.6.jar
-$HDFLIB_HOME/ext/slf4j-simple-2.0.6.jar
-"
-LIST_ITER_FILES="
-$HDFTEST_HOME/h5ex_g_iterate.h5
-$HDFTEST_HOME/h5ex_g_visit.h5
-"
-LIST_DATA_FILES="
-$HDFTEST_HOME/../testfiles/examples.groups.H5Ex_G_Create.txt
-$HDFTEST_HOME/../testfiles/examples.groups.H5Ex_G_Iterate.txt
-$HDFTEST_HOME/../testfiles/examples.groups.H5Ex_G_Compact.txt
-$HDFTEST_HOME/../testfiles/examples.groups.H5Ex_G_Corder.txt
-$HDFTEST_HOME/../testfiles/examples.groups.H5Ex_G_Intermediate.txt
-$HDFTEST_HOME/../testfiles/examples.groups.H5Ex_G_Phase.txt
-$HDFTEST_HOME/../testfiles/examples.groups.H5Ex_G_Visit.txt
-"
-
-#
-# copy files from source dirs to test dir
-#
-COPY_LIBFILES="$LIST_LIBRARY_FILES"
-COPY_JARTESTFILES="$LIST_JAR_TESTFILES"
-
-COPY_LIBFILES_TO_BLDLIBDIR()
-{
- # copy test files. Used -f to make sure get a new copy
- for tstfile in $COPY_LIBFILES
- do
- # ignore '#' comment
- echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
- RET=$?
- if [ $RET -eq 1 ]; then
- # skip cp if srcdir is same as destdir
- # this occurs when build/test performed in source dir and
- # make cp fail
- SDIR=`$DIRNAME $tstfile`
- INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
- INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
- if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
- $CP -fR $tstfile $BLDLIBDIR
- if [ $? -ne 0 ]; then
- echo "Error: FAILED to copy $tstfile ."
-
- # Comment out this to CREATE expected file
- exit $EXIT_FAILURE
- fi
- BNAME=`$BASENAME $tstfile`
- if [ "$BNAME" = "libhdf5_java.dylib" ]; then
- COPIED_LIBHDF5_JAVA=1
- fi
- fi
- fi
- done
- if [[ "$IS_DARWIN" = "yes" ]] && [[ $COPIED_LIBHDF5_JAVA -eq 1 ]]; then
- (cd $BLDLIBDIR; \
- install_name_tool -add_rpath @loader_path libhdf5_java.dylib; \
- exist_path=` otool -l libhdf5_java.dylib | grep libhdf5 | grep -v java | awk '{print $2}'`; \
- echo $exist_path; \
- install_name_tool -change $exist_path @rpath/libhdf5.dylib libhdf5_java.dylib)
- fi
- # copy jar files. Used -f to make sure get a new copy
- for tstfile in $COPY_JARTESTFILES
- do
- # ignore '#' comment
- echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
- RET=$?
- if [ $RET -eq 1 ]; then
- # skip cp if srcdir is same as destdir
- # this occurs when build/test performed in source dir and
- # make cp fail
- SDIR=`$DIRNAME $tstfile`
- INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
- INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
- if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
- $CP -fR $tstfile $BLDLIBDIR
- if [ $? -ne 0 ]; then
- echo "Error: FAILED to copy $tstfile ."
-
- # Comment out this to CREATE expected file
- exit $EXIT_FAILURE
- fi
- fi
- fi
- done
-}
-
-CLEAN_LIBFILES_AND_BLDLIBDIR()
-{
- # skip rm if srcdir is same as destdir
- # this occurs when build/test performed in source dir and
- # make cp fail
- SDIR=$HDFLIB_HOME
- INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
- INODE_DDIR=`$LS -i -d $BLDLIBDIR | $AWK -F' ' '{print $1}'`
- if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
- $RM -rf $BLDLIBDIR
- fi
-}
-
-COPY_DATAFILES="$LIST_DATA_FILES"
-
-COPY_DATAFILES_TO_BLDDIR()
-{
- # copy test files. Used -f to make sure get a new copy
- for tstfile in $COPY_DATAFILES
- do
- # ignore '#' comment
- echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
- RET=$?
- if [ $RET -eq 1 ]; then
- # skip cp if srcdir is same as destdir
- # this occurs when build/test performed in source dir and
- # make cp fail
- SDIR=`$DIRNAME $tstfile`
- INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
- INODE_DDIR=`$LS -i -d $BLDDIR | $AWK -F' ' '{print $1}'`
- if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
- $CP -f $tstfile $BLDDIR
- if [ $? -ne 0 ]; then
- echo "Error: FAILED to copy $tstfile ."
-
- # Comment out this to CREATE expected file
- exit $EXIT_FAILURE
- fi
- fi
- fi
- done
-}
-
-CLEAN_DATAFILES_AND_BLDDIR()
-{
- $RM $BLDDIR/examples.groups.H5Ex_G_*.txt
- $RM $BLDDIR/H5Ex_G_*.out
- $RM $BLDDIR/H5Ex_G_*.h5
-}
-
-COPY_ITERFILES="$LIST_ITER_FILES"
-
-COPY_ITERFILES_TO_BLDITERDIR()
-{
- # copy test files. Used -f to make sure get a new copy
- for tstfile in $COPY_ITERFILES
- do
- # ignore '#' comment
- echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
- RET=$?
- if [ $RET -eq 1 ]; then
- # skip cp if srcdir is same as destdir
- # this occurs when build/test performed in source dir and
- # make cp fail
- SDIR=`$DIRNAME $tstfile`
- INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
- INODE_DDIR=`$LS -i -d $BLDITERDIR | $AWK -F' ' '{print $1}'`
- if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
- $CP -f $tstfile $BLDITERDIR
- if [ $? -ne 0 ]; then
- echo "Error: FAILED to copy $tstfile ."
-
- # Comment out this to CREATE expected file
- exit $EXIT_FAILURE
- fi
- fi
- fi
- done
-}
-
-CLEAN_ITERFILES_AND_BLDITERDIR()
-{
- # skip rm if srcdir is same as destdir
- # this occurs when build/test performed in source dir and
- # make cp fail
- SDIR=`$DIRNAME $HDFTEST_HOME/h5ex_g_iterate.h5`
- INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
- INODE_DDIR=`$LS -i -d $BLDITERDIR | $AWK -F' ' '{print $1}'`
- if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
- $RM $BLDITERDIR
- fi
-}
-
-# Print a line-line message left justified in a field of 70 characters
-# beginning with the word "Testing".
-#
-TESTING() {
- SPACES=" "
- echo "Testing $* $SPACES" | cut -c1-70 | tr -d '\012'
-}
-
-# where Java is installed (requires jdk1.7.x)
-JAVAEXE=@JAVA@
-JAVAEXEFLAGS=@H5_JAVAFLAGS@
-
-###############################################################################
-# DO NOT MODIFY BELOW THIS LINE
-###############################################################################
-
-# prepare for test
-COPY_LIBFILES_TO_BLDLIBDIR
-COPY_DATAFILES_TO_BLDDIR
-COPY_ITERFILES_TO_BLDITERDIR
-
-CPATH=".:"$BLDLIBDIR"/"$JARFILE":"$BLDLIBDIR"/slf4j-api-2.0.6.jar:"$BLDLIBDIR"/slf4j-simple-2.0.6.jar:"$TESTJARFILE""
-
-TEST=/usr/bin/test
-if [ ! -x /usr/bin/test ]
-then
-TEST=`which test`
-fi
-
-if $TEST -z "$CLASSPATH"; then
- CLASSPATH=""
-fi
-CLASSPATH=$CPATH":"$CLASSPATH
-export CLASSPATH
-
-if $TEST -n "$JAVAPATH" ; then
- PATH=$JAVAPATH":"$PATH
- export PATH
-fi
-
-if $TEST -e /bin/uname; then
- os_name=`/bin/uname -s`
-elif $TEST -e /usr/bin/uname; then
- os_name=`/usr/bin/uname -s`
-else
- os_name=unknown
-fi
-
-if $TEST -z "$LD_LIBRARY_PATH" ; then
- LD_LIBRARY_PATH=""
-fi
-
-case $os_name in
- *)
- LD_LIBRARY_PATH=$BLDLIBDIR:$LD_LIBRARY_PATH
- ;;
-esac
-
-export LD_LIBRARY_PATH
-
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH examples.groups.H5Ex_G_Create"
-TESTING examples.groups.H5Ex_G_Create
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH examples.groups.H5Ex_G_Create > H5Ex_G_Create.out)
-if diff H5Ex_G_Create.out examples.groups.H5Ex_G_Create.txt > /dev/null; then
- echo " PASSED groups.H5Ex_G_Create"
-else
- echo "**FAILED** groups.H5Ex_G_Create"
- nerrors="`expr $nerrors + 1`"
-fi
-
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH examples.groups.H5Ex_G_Iterate"
-TESTING examples.groups.H5Ex_G_Iterate
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH examples.groups.H5Ex_G_Iterate > H5Ex_G_Iterate.out)
-if diff H5Ex_G_Iterate.out examples.groups.H5Ex_G_Iterate.txt > /dev/null; then
- echo " PASSED groups.H5Ex_G_Iterate"
-else
- echo "**FAILED** groups.H5Ex_G_Iterate"
- nerrors="`expr $nerrors + 1`"
-fi
-
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH examples.groups.H5Ex_G_Compact"
-TESTING examples.groups.H5Ex_G_Compact
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH examples.groups.H5Ex_G_Compact > H5Ex_G_Compact.out)
-if diff H5Ex_G_Compact.out examples.groups.H5Ex_G_Compact.txt > /dev/null; then
- echo " PASSED groups.H5Ex_G_Compact"
-else
- echo "**FAILED** groups.H5Ex_G_Compact"
- nerrors="`expr $nerrors + 1`"
-fi
-
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH examples.groups.H5Ex_G_Corder"
-TESTING examples.groups.H5Ex_G_Corder
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH examples.groups.H5Ex_G_Corder > H5Ex_G_Corder.out)
-if diff H5Ex_G_Corder.out examples.groups.H5Ex_G_Corder.txt > /dev/null; then
- echo " PASSED groups.H5Ex_G_Corder"
-else
- echo "**FAILED** groups.H5Ex_G_Corder"
- nerrors="`expr $nerrors + 1`"
-fi
-
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH examples.groups.H5Ex_G_Intermediate"
-TESTING examples.groups.H5Ex_G_Intermediate
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH examples.groups.H5Ex_G_Intermediate > H5Ex_G_Intermediate.out)
-if diff H5Ex_G_Intermediate.out examples.groups.H5Ex_G_Intermediate.txt > /dev/null; then
- echo " PASSED groups.H5Ex_G_Intermediate"
-else
- echo "**FAILED** groups.H5Ex_G_Intermediate"
- nerrors="`expr $nerrors + 1`"
-fi
-
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH examples.groups.H5Ex_G_Phase"
-TESTING examples.groups.H5Ex_G_Phase
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH examples.groups.H5Ex_G_Phase > H5Ex_G_Phase.out)
-if diff H5Ex_G_Phase.out examples.groups.H5Ex_G_Phase.txt > /dev/null; then
- echo " PASSED groups.H5Ex_G_Phase"
-else
- echo "**FAILED** groups.H5Ex_G_Phase"
- nerrors="`expr $nerrors + 1`"
-fi
-
-echo "$JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH examples.groups.H5Ex_G_Visit"
-TESTING examples.groups.H5Ex_G_Visit
-($RUNSERIAL $JAVAEXE $JAVAEXEFLAGS -Xmx1024M -Dorg.slf4j.simpleLogger.defaultLog=trace -Djava.library.path=$BLDLIBDIR -cp $CLASSPATH examples.groups.H5Ex_G_Visit > H5Ex_G_Visit.out)
-if diff H5Ex_G_Visit.out examples.groups.H5Ex_G_Visit.txt > /dev/null; then
- echo " PASSED groups.H5Ex_G_Visit"
-else
- echo "**FAILED** groups.H5Ex_G_Visit"
- nerrors="`expr $nerrors + 1`"
-fi
-
-# Clean up temporary files/directories
-CLEAN_ITERFILES_AND_BLDITERDIR
-CLEAN_LIBFILES_AND_BLDLIBDIR
-CLEAN_DATAFILES_AND_BLDDIR
-
-# Report test results and exit
-if test $nerrors -eq 0 ; then
- echo "All $TESTNAME tests passed."
- exit $EXIT_SUCCESS
-else
- echo "$TESTNAME tests failed with $nerrors errors."
- exit $EXIT_FAILURE
-fi
diff --git a/java/examples/groups/Makefile.am b/java/examples/groups/Makefile.am
deleted file mode 100644
index a3fb774..0000000
--- a/java/examples/groups/Makefile.am
+++ /dev/null
@@ -1,65 +0,0 @@
-#
-# Copyright by The HDF Group.
-# All rights reserved.
-#
-# This file is part of HDF5. The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://www.hdfgroup.org/licenses.
-# If you do not have access to either file, you may request a copy from
-# help@hdfgroup.org.
-##
-## Makefile.am
-## Run automake to generate a Makefile.in from this file.
-##
-#
-# HDF5 Java Library Examples Makefile(.in)
-
-include $(top_srcdir)/config/commence.am
-
-# Mark this directory as part of the JNI API
-JAVA_API=yes
-
-JAVAROOT = .classes
-
-classes:
- test -d $(@D)/$(JAVAROOT) || $(MKDIR_P) $(@D)/$(JAVAROOT)
-
-pkgpath = examples/groups
-hdfjarfile = jar$(PACKAGE_TARNAME)-$(PACKAGE_VERSION).jar
-CLASSPATH_ENV=CLASSPATH=.:$(JAVAROOT):$(top_builddir)/java/src/$(hdfjarfile):$(top_srcdir)/java/lib/slf4j-api-2.0.6.jar:$(top_srcdir)/java/lib/ext/slf4j-simple-2.0.6.jar:$$CLASSPATH
-
-jarfile = jar$(PACKAGE_TARNAME)groups.jar
-
-AM_JAVACFLAGS = $(H5_JAVACFLAGS) -deprecation
-
-TESTPACKAGE =
-
-noinst_JAVA = \
- H5Ex_G_Create.java \
- H5Ex_G_Iterate.java \
- H5Ex_G_Compact.java \
- H5Ex_G_Corder.java \
- H5Ex_G_Intermediate.java \
- H5Ex_G_Phase.java \
- H5Ex_G_Visit.java
-
-
-$(jarfile): classnoinst.stamp classes
- $(JAR) cvf $@ -C $(JAVAROOT)/ $(pkgpath)
-
-noinst_DATA = $(jarfile)
-
-.PHONY: classes
-
-check_SCRIPTS = JavaGroupExample.sh
-TEST_SCRIPT = $(check_SCRIPTS)
-
-CLEANFILES = classnoinst.stamp $(jarfile) $(JAVAROOT)/$(pkgpath)/*.class JavaGroupExample.sh
-
-clean:
- rm -rf $(JAVAROOT)/*
- rm -f $(jarfile)
- rm -f classnoinst.stamp
-
-include $(top_srcdir)/config/conclude.am
diff --git a/java/examples/groups/h5ex_g_iterate.h5 b/java/examples/groups/h5ex_g_iterate.h5
deleted file mode 100644
index e462703..0000000
--- a/java/examples/groups/h5ex_g_iterate.h5
+++ /dev/null
Binary files differ
diff --git a/java/examples/groups/h5ex_g_visit.h5 b/java/examples/groups/h5ex_g_visit.h5
deleted file mode 100644
index d8267b1..0000000
--- a/java/examples/groups/h5ex_g_visit.h5
+++ /dev/null
Binary files differ
generated by cgit v0.12 at 2024-07-01 09:20:35 (GMT)