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-rw-r--r--java/src/hdf/hdf5lib/CMakeLists.txt2
-rw-r--r--java/src/hdf/hdf5lib/H5.java3202
-rw-r--r--java/src/hdf/hdf5lib/HDF5Constants.java957
-rw-r--r--java/src/hdf/hdf5lib/HDF5GroupInfo.java21
-rw-r--r--java/src/hdf/hdf5lib/HDFArray.java681
-rw-r--r--java/src/hdf/hdf5lib/callbacks/Callbacks.java1
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5A_iterate_cb.java26
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java5
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5D_append_cb.java23
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5D_append_t.java5
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5D_iterate_cb.java25
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java5
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java23
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java5
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java5
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java26
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java5
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java26
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_cb.java22
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java5
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_cb.java23
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java5
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_cb.java22
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_t.java5
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_iterate_cb.java23
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java5
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_prp_close_func_cb.java23
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_prp_compare_func_cb.java23
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_prp_copy_func_cb.java23
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_prp_create_func_cb.java23
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_prp_delete_func_cb.java24
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_prp_get_func_cb.java24
-rw-r--r--java/src/hdf/hdf5lib/callbacks/H5P_prp_set_func_cb.java24
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5Exception.java3
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5IdException.java (renamed from java/src/hdf/hdf5lib/exceptions/HDF5AtomException.java)12
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5LibraryException.java8
-rw-r--r--java/src/hdf/hdf5lib/exceptions/HDF5ReferenceException.java6
-rw-r--r--java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java249
-rw-r--r--java/src/hdf/hdf5lib/structs/H5A_info_t.java18
-rw-r--r--java/src/hdf/hdf5lib/structs/H5E_error2_t.java28
-rw-r--r--java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java20
-rw-r--r--java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java7
-rw-r--r--java/src/hdf/hdf5lib/structs/H5F_info2_t.java45
-rw-r--r--java/src/hdf/hdf5lib/structs/H5G_info_t.java18
-rw-r--r--java/src/hdf/hdf5lib/structs/H5L_info_t.java16
-rw-r--r--java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java56
-rw-r--r--java/src/hdf/hdf5lib/structs/H5O_info_t.java45
-rw-r--r--java/src/hdf/hdf5lib/structs/H5O_native_info_t.java18
-rw-r--r--java/src/hdf/hdf5lib/structs/H5O_token_t.java15
-rw-r--r--java/src/hdf/hdf5lib/structs/H5_ih_info_t.java14
50 files changed, 5039 insertions, 856 deletions
diff --git a/java/src/hdf/hdf5lib/CMakeLists.txt b/java/src/hdf/hdf5lib/CMakeLists.txt
index f3d9b8d..5651031 100644
--- a/java/src/hdf/hdf5lib/CMakeLists.txt
+++ b/java/src/hdf/hdf5lib/CMakeLists.txt
@@ -42,7 +42,7 @@ set (HDF5_JAVA_HDF_HDF5_CALLBACKS_SOURCES
set (HDF5_JAVA_HDF_HDF5_EXCEPTIONS_SOURCES
exceptions/HDF5Exception.java
- exceptions/HDF5AtomException.java
+ exceptions/HDF5IdException.java
exceptions/HDF5AttributeException.java
exceptions/HDF5BtreeException.java
exceptions/HDF5DataFiltersException.java
diff --git a/java/src/hdf/hdf5lib/H5.java b/java/src/hdf/hdf5lib/H5.java
index 3d0b308..aef0ba1 100644
--- a/java/src/hdf/hdf5lib/H5.java
+++ b/java/src/hdf/hdf5lib/H5.java
@@ -241,10 +241,14 @@ public class H5 implements java.io.Serializable {
*/
public final static int LIB_VERSION[] = { 1, 13, 0 };
+ /**
+ * add system property to load library by path
+ */
public final static String H5PATH_PROPERTY_KEY = "hdf.hdf5lib.H5.hdf5lib";
- // add system property to load library by name from library path, via
- // System.loadLibrary()
+ /**
+ * add system property to load library by name from library path, via System.loadLibrary()
+ */
public final static String H5_LIBRARY_NAME_PROPERTY_KEY = "hdf.hdf5lib.H5.loadLibraryName";
private static String s_libraryName;
private static boolean isLibraryLoaded = false;
@@ -257,6 +261,9 @@ public class H5 implements java.io.Serializable {
loadH5Lib();
}
+ /**
+ * load native library
+ */
public static void loadH5Lib() {
// Make sure that the library is loaded only once
if (isLibraryLoaded)
@@ -468,6 +475,35 @@ public class H5 implements java.io.Serializable {
**/
public synchronized static native int H5get_libversion(int[] libversion) throws HDF5LibraryException;
+ /**
+ * H5set_free_list_limits
+ * Sets limits on the different kinds of free lists. Setting a value
+ * of -1 for a limit means no limit of that type. These limits are global
+ * for the entire library. Each "global" limit only applies to free lists
+ * of that type, so if an application sets a limit of 1 MB on each of the
+ * global lists, up to 3 MB of total storage might be allocated (1MB on
+ * each of regular, array and block type lists).
+ *
+ * The settings for block free lists are duplicated to factory free lists.
+ * Factory free list limits cannot be set independently currently.
+ *
+ * @param reg_global_lim
+ * The limit on all "regular" free list memory used
+ * @param reg_list_lim
+ * The limit on memory used in each "regular" free list
+ * @param arr_global_lim
+ * The limit on all "array" free list memory used
+ * @param arr_list_lim
+ * The limit on memory used in each "array" free list
+ * @param blk_global_lim
+ * The limit on all "block" free list memory used
+ * @param blk_list_lim
+ * The limit on memory used in each "block" free list
+ * @return a non-negative value if successful, along with the version information.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ */
public synchronized static native int H5set_free_list_limits(int reg_global_lim, int reg_list_lim,
int arr_global_lim, int arr_list_lim, int blk_global_lim, int blk_list_lim) throws HDF5LibraryException;
@@ -476,8 +512,8 @@ public class H5 implements java.io.Serializable {
*
* @param file_export_name
* The file name to export data into.
- * @param file_name
- * The name of the HDF5 file containing the dataset.
+ * @param file_id
+ * The identifier of the HDF5 file containing the dataset.
* @param object_path
* The full path of the dataset to be exported.
* @param binary_order
@@ -489,10 +525,31 @@ public class H5 implements java.io.Serializable {
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
**/
- public synchronized static native void H5export_dataset(String file_export_name, String file_name,
+ public synchronized static native void H5export_dataset(String file_export_name, long file_id,
String object_path, int binary_order) throws HDF5LibraryException;
/**
+ * H5export_attribute is a utility function to save data in a file.
+ *
+ * @param file_export_name
+ * The file name to export data into.
+ * @param dataset_id
+ * The identifier of the dataset containing the attribute.
+ * @param attribute_name
+ * The attribute to be exported.
+ * @param binary_order
+ * 99 - export data as text.
+ * 1 - export data as binary Native Order.
+ * 2 - export data as binary Little Endian.
+ * 3 - export data as binary Big Endian.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native void H5export_attribute(String file_export_name, long dataset_id,
+ String attribute_name, int binary_order) throws HDF5LibraryException;
+
+ /**
* H5is_library_threadsafe Checks to see if the library was built with thread-safety enabled.
*
* @return true if hdf5 library implements threadsafe
@@ -1016,7 +1073,7 @@ public class H5 implements java.io.Serializable {
/**
* H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
- * mem_type_id. The entire attribute is read into buf from the file.
+ * mem_type_id. The entire attribute is read into buffer from the file.
*
* @param attr_id
* IN: Identifier of an attribute to read.
@@ -1037,11 +1094,47 @@ public class H5 implements java.io.Serializable {
public synchronized static native int H5Aread(long attr_id, long mem_type_id, byte[] obj, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static int H5Aread(long attr_id, long mem_type_id, byte[] buf) throws HDF5LibraryException, NullPointerException
{
return H5Aread(attr_id, mem_type_id, buf, true);
}
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param obj
+ * Buffer to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static int H5Aread(long attr_id, long mem_type_id, Object obj) throws HDF5Exception, HDF5LibraryException, NullPointerException
{
return H5Aread(attr_id, mem_type_id, obj, true);
@@ -1141,63 +1234,343 @@ public class H5 implements java.io.Serializable {
return status;
}
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of double from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of double to store data read from the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Aread_double(long attr_id, long mem_type_id, double[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of double from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of double to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static int H5Aread_double(long attr_id, long mem_type_id, double[] buf)
throws HDF5LibraryException, NullPointerException
{
return H5Aread_double(attr_id, mem_type_id, buf, true);
}
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of float from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of float to store data read from the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Aread_float(long attr_id, long mem_type_id, float[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of float from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of float to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static int H5Aread_float(long attr_id, long mem_type_id, float[] buf)
throws HDF5LibraryException, NullPointerException
{
return H5Aread_float(attr_id, mem_type_id, buf, true);
}
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of int from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of int to store data read from the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Aread_int(long attr_id, long mem_type_id, int[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of int from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of int to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static int H5Aread_int(long attr_id, long mem_type_id, int[] buf)
throws HDF5LibraryException, NullPointerException
{
return H5Aread_int(attr_id, mem_type_id, buf, true);
}
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of long from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of long to store data read from the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Aread_long(long attr_id, long mem_type_id, long[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of long from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of long to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static int H5Aread_long(long attr_id, long mem_type_id, long[] buf)
throws HDF5LibraryException, NullPointerException
{
return H5Aread_long(attr_id, mem_type_id, buf, true);
}
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of String from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of String to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Aread_reg_ref(long attr_id, long mem_type_id, String[] buf)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of short from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of short to store data read from the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Aread_short(long attr_id, long mem_type_id, short[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of shortfrom the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of short to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static int H5Aread_short(long attr_id, long mem_type_id, short[] buf)
throws HDF5LibraryException, NullPointerException
{
return H5Aread_short(attr_id, mem_type_id, buf, true);
}
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of variable-lenght from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of variable-lenght to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5AreadVL(long attr_id, long mem_type_id, Object[] buf)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of String from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of String to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Aread_string(long attr_id, long mem_type_id, String[] buf)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of variable-lenght strings from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of variable-lenght strings to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Aread_VLStrings(long attr_id, long mem_type_id, Object[] buf)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is read into buffer of string from the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to read.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * Buffer of string to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5AreadComplex(long attr_id, long mem_type_id, String[] buf)
throws HDF5LibraryException, NullPointerException;
@@ -1270,12 +1643,48 @@ public class H5 implements java.io.Serializable {
public synchronized static native int H5Awrite(long attr_id, long mem_type_id, byte[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is written from buf to the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to write.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * IN: Buffer with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data is null.
+ **/
public synchronized static int H5Awrite(long attr_id, long mem_type_id, byte[] buf)
throws HDF5LibraryException, NullPointerException
{
return H5Awrite(attr_id, mem_type_id, buf, true);
}
+ /**
+ * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is written from buf to the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to write.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param obj
+ * IN: Buffer with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data is null.
+ **/
public synchronized static int H5Awrite(long attr_id, long mem_type_id, Object obj)
throws HDF5Exception, HDF5LibraryException, NullPointerException
{
@@ -1353,60 +1762,286 @@ public class H5 implements java.io.Serializable {
return status;
}
+ /**
+ * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is written from buffer of double to the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to write.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * IN: Buffer of double with data to be written to the file.
+ * @param isCriticalPinning
+ * IN: request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data is null.
+ **/
public synchronized static native int H5Awrite_double(long attr_id, long mem_type_id, double[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is written from buffer of double to the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to write.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * IN: Buffer of double with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data is null.
+ **/
public synchronized static int H5Awrite_double(long attr_id, long mem_type_id, double[] buf)
throws HDF5LibraryException, NullPointerException
{
return H5Awrite_double(attr_id, mem_type_id, buf, true);
}
+ /**
+ * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is written from buffer of float to the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to write.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * IN: Buffer of float with data to be written to the file.
+ * @param isCriticalPinning
+ * IN: request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data is null.
+ **/
public synchronized static native int H5Awrite_float(long attr_id, long mem_type_id, float[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is written from buffer of float to the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to write.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * IN: Buffer of float with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data is null.
+ **/
public synchronized static int H5Awrite_float(long attr_id, long mem_type_id, float[] buf)
throws HDF5LibraryException, NullPointerException
{
return H5Awrite_float(attr_id, mem_type_id, buf, true);
}
+ /**
+ * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is written from buffer of int to the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to write.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * IN: Buffer of int with data to be written to the file.
+ * @param isCriticalPinning
+ * IN: request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data is null.
+ **/
public synchronized static native int H5Awrite_int(long attr_id, long mem_type_id, int[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is written from buffer of int to the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to write.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * IN: Buffer of int with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data is null.
+ **/
public synchronized static int H5Awrite_int(long attr_id, long mem_type_id, int[] buf)
throws HDF5LibraryException, NullPointerException
{
return H5Awrite_int(attr_id, mem_type_id, buf, true);
}
+ /**
+ * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is written from buffer of long to the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to write.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * IN: Buffer of long with data to be written to the file.
+ * @param isCriticalPinning
+ * IN: request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data is null.
+ **/
public synchronized static native int H5Awrite_long(long attr_id, long mem_type_id, long[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is written from buffer of long to the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to write.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * IN: Buffer of long with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data is null.
+ **/
public synchronized static int H5Awrite_long(long attr_id, long mem_type_id, long[] buf)
throws HDF5LibraryException, NullPointerException
{
return H5Awrite_long(attr_id, mem_type_id, buf, true);
}
+ /**
+ * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is written from buffer of short to the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to write.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * IN: Buffer of short with data to be written to the file.
+ * @param isCriticalPinning
+ * IN: request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data is null.
+ **/
public synchronized static native int H5Awrite_short(long attr_id, long mem_type_id, short[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is written from buffer of short to the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to write.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * IN: Buffer of short with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data is null.
+ **/
public synchronized static int H5Awrite_short(long attr_id, long mem_type_id, short[] buf)
throws HDF5LibraryException, NullPointerException
{
return H5Awrite_short(attr_id, mem_type_id, buf, true);
}
+ /**
+ * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is written from buffer of string to the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to write.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * IN: Buffer of string with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data is null.
+ **/
public synchronized static native int H5Awrite_string(long attr_id, long mem_type_id, String[] buf)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with
+ * mem_type_id. The entire attribute is written from buffer of variable-lenght to the file.
+ *
+ * @param attr_id
+ * IN: Identifier of an attribute to write.
+ * @param mem_type_id
+ * IN: Identifier of the attribute datatype (in memory).
+ * @param buf
+ * IN: Buffer of variable-lenght with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data is null.
+ **/
public synchronized static native int H5AwriteVL(long attr_id, long mem_type_id, Object[] buf)
throws HDF5LibraryException, NullPointerException;
/**
* H5Awrite_VLStrings writes a variable length String dataset, specified by its identifier attr_id, from
- * the application memory buffer buf into the file.
+ * the application memory buffer buffer of variable-lenght strings into the file.
*
* ---- contributed by Rosetta Biosoftware
*
@@ -1415,7 +2050,7 @@ public class H5 implements java.io.Serializable {
* @param mem_type_id
* Identifier of the memory datatype.
* @param buf
- * Buffer with data to be written to the file.
+ * Buffer of variable-lenght strings with data to be written to the file.
*
* @return a non-negative value if successful
*
@@ -1922,12 +2557,60 @@ public class H5 implements java.io.Serializable {
long file_space_id, long xfer_plist_id, byte[] obj, boolean isCriticalPinning) throws HDF5LibraryException,
NullPointerException;
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer buf.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static int H5Dread(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id,
long xfer_plist_id, byte[] buf) throws HDF5LibraryException, NullPointerException
{
return H5Dread(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer buf.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param obj
+ * Buffer to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static int H5Dread(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id,
long xfer_plist_id, Object obj) throws HDF5Exception, HDF5LibraryException, NullPointerException
{
@@ -2043,65 +2726,411 @@ public class H5 implements java.io.Serializable {
return status;
}
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer of type double.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of type double to store data read from the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Dread_double(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, double[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer of type double.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of double to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static int H5Dread_double(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, double[] buf) throws HDF5LibraryException, NullPointerException
{
return H5Dread_double(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer of float.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of float to store data read from the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Dread_float(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, float[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer of float.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of float to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static int H5Dread_float(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, float[] buf) throws HDF5LibraryException, NullPointerException
{
return H5Dread_float(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer of int.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of int to store data read from the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Dread_int(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, int[] buf, boolean isCriticalPinning) throws HDF5LibraryException,
NullPointerException;
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer of int.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of int to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static int H5Dread_int(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, int[] buf) throws HDF5LibraryException, NullPointerException
{
return H5Dread_int(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer of long.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of long to store data read from the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Dread_long(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, long[] buf, boolean isCriticalPinning) throws HDF5LibraryException,
NullPointerException;
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer of long.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of long to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static int H5Dread_long(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, long[] buf) throws HDF5LibraryException, NullPointerException
{
return H5Dread_long(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer of string.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of string to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Dread_reg_ref(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, String[] buf) throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer of short.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of short to store data read from the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Dread_short(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, short[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer of short.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of short to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static int H5Dread_short(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, short[] buf) throws HDF5LibraryException, NullPointerException
{
return H5Dread_short(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer of variable-lenght.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of variable-lenght to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5DreadVL(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, Object[] buf) throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer of string.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of string to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Dread_string(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, String[] buf) throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application
+ * memory buffer of variable-lenght strings.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of variable-lenght strings to store data read from the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - data buffer is null.
+ **/
public synchronized static native int H5Dread_VLStrings(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, Object[] buf) throws HDF5LibraryException, NullPointerException;
@@ -2170,7 +3199,7 @@ public class H5 implements java.io.Serializable {
/**
* H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
- * buf into the file.
+ * into the file.
*
* @param dataset_id
* Identifier of the dataset read from.
@@ -2198,12 +3227,60 @@ public class H5 implements java.io.Serializable {
long file_space_id, long xfer_plist_id, byte[] buf, boolean isCriticalPinning) throws HDF5LibraryException,
NullPointerException;
+ /**
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
+ * into the file.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public synchronized static int H5Dwrite(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id,
long xfer_plist_id, byte[] buf) throws HDF5LibraryException, NullPointerException
{
return H5Dwrite(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
+ /**
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
+ * into the file.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param obj
+ * Buffer with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public synchronized static int H5Dwrite(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id,
long xfer_plist_id, Object obj) throws HDF5Exception, HDF5LibraryException, NullPointerException
{
@@ -2299,59 +3376,357 @@ public class H5 implements java.io.Serializable {
return status;
}
+ /**
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
+ * into the file.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of double with data to be written to the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public synchronized static native int H5Dwrite_double(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, double[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
+ * into the file.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of double with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public synchronized static int H5Dwrite_double(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, double[] buf) throws HDF5LibraryException, NullPointerException
{
return H5Dwrite_double(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
+ /**
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
+ * into the file.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of float with data to be written to the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public synchronized static native int H5Dwrite_float(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, float[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
+ * into the file.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of float with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public synchronized static int H5Dwrite_float(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, float[] buf) throws HDF5LibraryException, NullPointerException
{
return H5Dwrite_float(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
+ /**
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
+ * into the file.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of int with data to be written to the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public synchronized static native int H5Dwrite_int(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, int[] buf, boolean isCriticalPinning) throws HDF5LibraryException,
NullPointerException;
+ /**
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
+ * into the file.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of int with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public synchronized static int H5Dwrite_int(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, int[] buf) throws HDF5LibraryException, NullPointerException
{
return H5Dwrite_int(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
+ /**
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
+ * into the file.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of long with data to be written to the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public synchronized static native int H5Dwrite_long(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, long[] buf, boolean isCriticalPinning) throws HDF5LibraryException,
NullPointerException;
+ /**
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
+ * into the file.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of long with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public synchronized static int H5Dwrite_long(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, long[] buf) throws HDF5LibraryException, NullPointerException
{
return H5Dwrite_long(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
+ /**
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
+ * into the file.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of short with data to be written to the file.
+ * @param isCriticalPinning
+ * request lock on data reference.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public synchronized static native int H5Dwrite_short(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, short[] buf, boolean isCriticalPinning)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
+ * into the file.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of short with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public synchronized static int H5Dwrite_short(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, short[] buf) throws HDF5LibraryException, NullPointerException
{
return H5Dwrite_short(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true);
}
+ /**
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
+ * into the file.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of string with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public synchronized static native int H5Dwrite_string(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, String[] buf) throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer
+ * into the file.
+ *
+ * @param dataset_id
+ * Identifier of the dataset read from.
+ * @param mem_type_id
+ * Identifier of the memory datatype.
+ * @param mem_space_id
+ * Identifier of the memory dataspace.
+ * @param file_space_id
+ * Identifier of the dataset's dataspace in the file.
+ * @param xfer_plist_id
+ * Identifier of a transfer property list for this I/O operation.
+ * @param buf
+ * Buffer of variable-length with data to be written to the file.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public synchronized static native int H5DwriteVL(long dataset_id, long mem_type_id, long mem_space_id,
long file_space_id, long xfer_plist_id, Object[] buf) throws HDF5LibraryException, NullPointerException;
@@ -2628,7 +4003,7 @@ public class H5 implements java.io.Serializable {
/**
- * H5Epush2 pushes a new error record onto the error stack specified by estack_id.
+ * H5Epush pushes a new error record onto the error stack specified by estack_id.
*
* @param stack_id
* IN: Error stack identifier.
@@ -2657,6 +4032,31 @@ public class H5 implements java.io.Serializable {
{
H5Epush2(stack_id, file, func, line, cls_id, maj_id, min_id, msg);
}
+ /**
+ * H5Epush2 pushes a new error record onto the error stack specified by estack_id.
+ *
+ * @param stack_id
+ * IN: Error stack identifier.
+ * @param file
+ * IN: Name of the file in which the error was detected.
+ * @param func
+ * IN: Name of the function in which the error was detected.
+ * @param line
+ * IN: Line number within the file at which the error was detected.
+ * @param cls_id
+ * IN: Error class identifier.
+ * @param maj_id
+ * IN: Major error identifier.
+ * @param min_id
+ * IN: Minor error identifier.
+ * @param msg
+ * IN: Error description string.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - file, func, or msg is null.
+ **/
public synchronized static native void H5Epush2(long stack_id, String file, String func, int line,
long cls_id, long maj_id, long min_id, String msg) throws HDF5LibraryException, NullPointerException;
@@ -2714,6 +4114,24 @@ public class H5 implements java.io.Serializable {
{
H5Ewalk2(stack_id, direction, func, client_data);
}
+ /**
+ * H5Ewalk2 walks the error stack specified by estack_id for the current thread and calls the
+ * function specified in func for each error along the way.
+ *
+ * @param stack_id
+ * IN: Error stack identifier.
+ * @param direction
+ * IN: Direction in which the error stack is to be walked.
+ * @param func
+ * IN: Function to be called for each error encountered.
+ * @param client_data
+ * IN: Data to be passed with func.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - func is null.
+ **/
public synchronized static native void H5Ewalk2(long stack_id, long direction, H5E_walk_cb func, H5E_walk_t client_data)
throws HDF5LibraryException, NullPointerException;
@@ -2950,6 +4368,19 @@ public class H5 implements java.io.Serializable {
private synchronized static native long _H5Fget_create_plist(long file_id) throws HDF5LibraryException;
+ /**
+ * H5Fget_filesize retrieves the file size of the HDF5 file. This function
+ * is called after an existing file is opened in order
+ * to learn the true size of the underlying file.
+ *
+ * @param file_id
+ * IN: File identifier for a currently-open HDF5 file
+ *
+ * @return the file size of the HDF5 file
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native long H5Fget_filesize(long file_id) throws HDF5LibraryException;
/**
@@ -3598,37 +5029,118 @@ public class H5 implements java.io.Serializable {
return H5Gget_obj_info_all(loc_id, name, objNames, objTypes, null, null, tokens, HDF5Constants.H5_INDEX_NAME);
}
- public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] oname, int[] otype,
+ /**
+ * retrieves information of all objects under the group (name) located in the file or group specified by loc_id.
+ *
+ * @param loc_id
+ * IN: File or group identifier
+ * @param name
+ * IN: Name of group for which information is to be retrieved
+ * @param objNames
+ * OUT: Names of all objects under the group, name.
+ * @param objTypes
+ * OUT: Types of all objects under the group, name.
+ * @param ltype
+ * OUT: Link type
+ * @param tokens
+ * OUT: Object token of all objects under the group, name.
+ * @param indx_type
+ * IN: Index type for iterate
+ *
+ * @return the number of items found
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ */
+ public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] objNames, int[] objTypes,
int[] ltype, H5O_token_t[] tokens, int indx_type) throws HDF5LibraryException, NullPointerException {
- return H5Gget_obj_info_full(loc_id, name, oname, otype, ltype, null, tokens, indx_type, -1);
+ return H5Gget_obj_info_full(loc_id, name, objNames, objTypes, ltype, null, tokens, indx_type, -1);
}
- public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] oname, int[] otype,
+ /**
+ * retrieves information of all objects under the group (name) located in the file or group specified by loc_id.
+ *
+ * @param loc_id
+ * IN: File or group identifier
+ * @param name
+ * IN: Name of group for which information is to be retrieved
+ * @param objNames
+ * OUT: Names of all objects under the group, name.
+ * @param objTypes
+ * OUT: Types of all objects under the group, name.
+ * @param ltype
+ * OUT: Link type
+ * @param fno
+ * OUT: File number
+ * @param tokens
+ * OUT: Object token of all objects under the group, name.
+ * @param indx_type
+ * IN: Index type for iterate
+ *
+ * @return the number of items found
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ */
+ public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] objNames, int[] objTypes,
int[] ltype, long[] fno, H5O_token_t[] tokens, int indx_type) throws HDF5LibraryException, NullPointerException {
- return H5Gget_obj_info_full(loc_id, name, oname, otype, ltype, fno, tokens, indx_type, -1);
+ return H5Gget_obj_info_full(loc_id, name, objNames, objTypes, ltype, fno, tokens, indx_type, -1);
}
- public synchronized static int H5Gget_obj_info_full(long loc_id, String name, String[] oname, int[] otype,
+ /**
+ * retrieves information of all objects under the group (name) located in the file or group specified by loc_id.
+ *
+ * @param loc_id
+ * IN: File or group identifier
+ * @param name
+ * IN: Name of group for which information is to be retrieved
+ * @param objNames
+ * OUT: Names of all objects under the group, name.
+ * @param objTypes
+ * OUT: Types of all objects under the group, name.
+ * @param ltype
+ * OUT: Link type
+ * @param fno
+ * OUT: File number
+ * @param tokens
+ * OUT: Object token of all objects under the group, name.
+ * @param indx_type
+ * IN: Index type for iterate
+ * @param indx_order
+ * IN: Index order for iterate
+ *
+ * @return the number of items found
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ */
+ public synchronized static int H5Gget_obj_info_full(long loc_id, String name, String[] objNames, int[] objTypes,
int[] ltype, long[] fno, H5O_token_t[] tokens, int indx_type, int indx_order) throws HDF5LibraryException,
NullPointerException {
- if (oname == null) {
+ if (objNames == null) {
throw new NullPointerException("H5Gget_obj_info_full(): name array is null");
}
- if (otype == null) {
+ if (objTypes == null) {
throw new NullPointerException("H5Gget_obj_info_full(): object type array is null");
}
- if (oname.length == 0) {
+ if (objNames.length == 0) {
throw new HDF5LibraryException("H5Gget_obj_info_full(): array size is zero");
}
- if (oname.length != otype.length) {
+ if (objNames.length != objTypes.length) {
throw new HDF5LibraryException("H5Gget_obj_info_full(): name and type array sizes are different");
}
if (ltype == null)
- ltype = new int[otype.length];
+ ltype = new int[objTypes.length];
if (fno == null)
fno = new long[tokens.length];
@@ -3639,15 +5151,15 @@ public class H5 implements java.io.Serializable {
if (indx_order < 0)
indx_order = HDF5Constants.H5_ITER_INC;
- log.trace("H5Gget_obj_info_full: oname_len={}", oname.length);
- int status = H5Gget_obj_info_full(loc_id, name, oname, otype, ltype, fno, tokens, oname.length, indx_type,
+ log.trace("H5Gget_obj_info_full: objNames_len={}", objNames.length);
+ int status = H5Gget_obj_info_full(loc_id, name, objNames, objTypes, ltype, fno, tokens, objNames.length, indx_type,
indx_order);
- for (int indx = 0; indx < oname.length; indx++)
- log.trace("H5Gget_obj_info_full: oname={}", oname[indx]);
+ for (int indx = 0; indx < objNames.length; indx++)
+ log.trace("H5Gget_obj_info_full: objNames={}", objNames[indx]);
return status;
}
- private synchronized static native int H5Gget_obj_info_full(long loc_id, String name, String[] oname, int[] otype,
+ private synchronized static native int H5Gget_obj_info_full(long loc_id, String name, String[] objNames, int[] objTypes,
int[] ltype, long[] fno, H5O_token_t[] tokens, int n, int indx_type, int indx_order) throws HDF5LibraryException,
NullPointerException;
@@ -3663,9 +5175,9 @@ public class H5 implements java.io.Serializable {
* @param idx
* IN: the index of the object to iterate.
* @param oname
- * the name of the object [OUT]
+ * OUT: the name of the object
* @param type
- * the type of the object [OUT]
+ * OUT: the type of the object
*
* @return non-negative if successful, -1 if not.
*
@@ -3866,13 +5378,40 @@ public class H5 implements java.io.Serializable {
// //
// ////////////////////////////////////////////////////////////
+ /**
+ * H5Iget_file_id obtains the file ID specified by the identifier, obj_id.
+ *
+ * @param obj_id
+ * IN: Identifier of the object.
+ *
+ * @return the file ID.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native long H5Iget_file_id(long obj_id) throws HDF5LibraryException;
+ /**
+ * H5Iget_name_long retrieves the name of an object specified by the identifier, obj_id.
+ * @deprecated
+ *
+ * @param obj_id
+ * IN: Identifier of the object.
+ * @param name
+ * OUT: Attribute name buffer.
+ * @param size
+ * IN: Maximum length of the name to retrieve.
+ *
+ * @return the length of the name retrieved.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
@Deprecated
public synchronized static native long H5Iget_name_long(long obj_id, String[] name, long size)
throws HDF5LibraryException, NullPointerException;
/**
- * H5Iget_name_str retrieves the name of an object specified by the identifier, obj_id.
+ * H5Iget_name retrieves the name of an object specified by the identifier, obj_id.
*
* @param obj_id
* IN: Identifier of the object.
@@ -3885,10 +5424,44 @@ public class H5 implements java.io.Serializable {
public synchronized static native String H5Iget_name(long obj_id)
throws HDF5LibraryException;
+ /**
+ * H5Iget_ref obtains the number of references outstanding specified by the identifier, obj_id.
+ *
+ * @param obj_id
+ * IN: Identifier of the object.
+ *
+ * @return the reference count.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native int H5Iget_ref(long obj_id) throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Idec_ref decrements the reference count specified by the identifier, obj_id.
+ * If the reference count for an ID reaches zero, the object will be closed.
+ *
+ * @param obj_id
+ * IN: Identifier of the object.
+ *
+ * @return the reference count.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native int H5Idec_ref(long obj_id) throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Iinc_ref increments the reference count specified by the identifier, obj_id.
+ *
+ * @param obj_id
+ * IN: Identifier of the object.
+ *
+ * @return the reference count.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native int H5Iinc_ref(long obj_id) throws HDF5LibraryException, NullPointerException;
/**
@@ -5179,7 +6752,7 @@ public class H5 implements java.io.Serializable {
return id;
}
- public synchronized static native long _H5Oopen_by_idx(long loc_id, String group_name,
+ private synchronized static native long _H5Oopen_by_idx(long loc_id, String group_name,
int idx_type, int order, long n, long lapl_id) throws HDF5LibraryException, NullPointerException;
/**
@@ -5210,8 +6783,30 @@ public class H5 implements java.io.Serializable {
**/
public synchronized static native void H5Orefresh(long object_id) throws HDF5LibraryException;
+ /**
+ * H5Odisable_mdc_flushes corks an object, keeping dirty entries associated with the object in the metadata cache.
+ *
+ * @param object_id
+ * IN: Identifier of the object to be corked.
+ **/
public synchronized static native void H5Odisable_mdc_flushes(long object_id);
+ /**
+ * H5Oenable_mdc_flushes uncorks an object, keeping dirty entries associated with the object in the metadata cache.
+ *
+ * @param object_id
+ * IN: Identifier of the object to be uncorked.
+ **/
public synchronized static native void H5Oenable_mdc_flushes(long object_id);
+ /**
+ * H5Oare_mdc_flushes_disabled retrieve the object's "cork" status.
+ *
+ * @param object_id
+ * IN: Identifier of the object to be flushed.
+ *
+ * @return the cork status
+ * TRUE if mdc flushes for the object is disabled
+ * FALSE if mdc flushes for the object is not disabled
+ **/
public synchronized static native boolean H5Oare_mdc_flushes_disabled(long object_id);
// /////// unimplemented ////////
@@ -5364,6 +6959,7 @@ public class H5 implements java.io.Serializable {
* IN: First property object to be compared
* @param plid2
* IN: Second property object to be compared
+ *
* @return positive value if equal; zero if unequal, a negative value if failed
*
* @exception HDF5LibraryException
@@ -5371,6 +6967,19 @@ public class H5 implements java.io.Serializable {
*/
public synchronized static native int H5Pequal(long plid1, long plid2) throws HDF5LibraryException;
+ /**
+ * H5Pequal determines if two property lists or classes are equal
+ *
+ * @param plid1
+ * IN: First property object to be compared
+ * @param plid2
+ * IN: Second property object to be compared
+ *
+ * @return TRUE if equal, FALSE if unequal
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ */
public static boolean H5P_equal(long plid1, long plid2) throws HDF5LibraryException {
if (H5Pequal(plid1, plid2) == 1)
return true;
@@ -5456,7 +7065,7 @@ public class H5 implements java.io.Serializable {
return _H5Pclose_class(plid);
}
- public synchronized static native int _H5Pclose_class(long plid) throws HDF5LibraryException;
+ private synchronized static native int _H5Pclose_class(long plid) throws HDF5LibraryException;
/**
* H5Pclose terminates access to a property list.
@@ -5524,6 +7133,19 @@ public class H5 implements java.io.Serializable {
// Define property list iteration function type
// typedef herr_t (*H5P_iterate_t)(hid_t id, const char *name, void *iter_data);
+ /**
+ * H5Pcreate_class_nocb creates an new property class with no callback functions.
+ *
+ * @param parent_class
+ * IN: Identifier of the parent property class.
+ * @param name
+ * IN: Name of the property class.
+ *
+ * @return a property list identifier if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public static long H5Pcreate_class_nocb(long parent_class, String name) throws HDF5LibraryException {
long id = _H5Pcreate_class_nocb(parent_class, name);
if (id > 0) {
@@ -5550,17 +7172,69 @@ public class H5 implements java.io.Serializable {
// private synchronized static native long _H5Pcreate_class(long parent_class, String name, H5P_cls_create_func_cb create_op, H5P_cls_create_func_t create_data,
// H5P_cls_copy_func_cb copy_op, H5P_cls_copy_func_t copy_data, H5P_cls_close_func_cb close_op, H5P_cls_close_func_t close_data) throws HDF5LibraryException;
+ /**
+ * H5Pregister2_nocb registers a property list with no callback functions.
+ *
+ * @param plist_class
+ * IN: Identifier of the property list.
+ * @param name
+ * IN: Name of the property.
+ * @param size
+ * IN: Size the property value.
+ * @param def_value
+ * IN: Defaul value of the property
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native void H5Pregister2_nocb(long plist_class, String name, long size, byte[] def_value) throws HDF5LibraryException;
// public synchronized static native void H5Pregister2(long plist_class, String name, long size, byte[] def_value, H5P_prp_create_func_cb prp_create, H5P_prp_set_func_cb prp_set,
// H5P_prp_get_func_cb prp_get, H5P_prp_delete_func_cb prp_delete, H5P_prp_copy_func_cb prp_copy, H5P_prp_compare_func_cb prp_cmp, H5P_prp_close_func_cb prp_close) throws HDF5LibraryException;
+ /**
+ * H5Pinsert2_nocb inserts a property list with no callback functions.
+ *
+ * @param plist
+ * IN: Identifier of the property list.
+ * @param name
+ * IN: Name of the property.
+ * @param size
+ * IN: Size the property value.
+ * @param value
+ * IN: Defaul value of the property
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native void H5Pinsert2_nocb(long plist, String name, long size, byte[] value) throws HDF5LibraryException;
// public synchronized static native void H5Pinsert2(long plist, String name, long size, byte[] value, H5P_prp_set_func_cb prp_set, H5P_prp_get_func_cb prp_get,
// H5P_prp_delete_func_cb prp_delete, H5P_prp_copy_func_cb prp_copy, H5P_prp_compare_func_cb prp_cmp, H5P_prp_close_func_cb prp_close) throws HDF5LibraryException;
+ /**
+ * H5Piterate iterates over the properties in a property list or class
+ *
+ * @param plist
+ * IN: ID of property object to iterate over
+ * @param idx
+ * IN/OUT: index of the property to begin with
+ * @param op
+ * IN: function to be called with each property iterated over.
+ * @param op_data
+ * IN: iteration data from user
+ *
+ * @return
+ * the return value of the last call to op if it was non-zero,
+ * zero if all properties have been processed
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - size is null.
+ *
+ **/
public synchronized static native int H5Piterate(long plist, int[] idx, H5P_iterate_cb op, H5P_iterate_t op_data) throws HDF5LibraryException;
// /////// Object creation property list (OCPL) routines ///////
@@ -5573,7 +7247,7 @@ public class H5 implements java.io.Serializable {
* @param attributes
* The maximun and minimum no. of attributes to be stored.
*
- * <pre>
+ * <pre>
* attributes[0] = The maximum number of attributes to be stored in compact storage
* attributes[1] = The minimum number of attributes to be stored in dense storage
* </pre>
@@ -5673,6 +7347,51 @@ public class H5 implements java.io.Serializable {
public synchronized static native void H5Pset_obj_track_times(long ocpl_id, boolean track_times)
throws HDF5LibraryException;
+ /**
+ * H5Pmodify_filter modifies the specified FILTER in the transient or permanent output filter pipeline
+ * depending on whether PLIST is a dataset creation or dataset
+ * transfer property list. The FLAGS argument specifies certain
+ * general properties of the filter and is documented below.
+ * The CD_VALUES is an array of CD_NELMTS integers which are
+ * auxiliary data for the filter. The integer vlues will be
+ * stored in the dataset object header as part of the filter
+ * information.
+ *<p>
+ * The FLAGS argument is a bit vector of the following fields:
+ *<p>
+ * H5Z_FLAG_OPTIONAL(0x0001)
+ * If this bit is set then the filter is optional. If the
+ * filter fails during an H5Dwrite() operation then the filter
+ * is just excluded from the pipeline for the chunk for which it
+ * failed; the filter will not participate in the pipeline
+ * during an H5Dread() of the chunk. If this bit is clear and
+ * the filter fails then the entire I/O operation fails.
+ * If this bit is set but encoding is disabled for a filter,
+ * attempting to write will generate an error.
+ *<p>
+ * Note: This function currently supports only the permanent filter
+ * pipeline. That is, PLIST_ID must be a dataset creation
+ * property list.
+ *
+ * @param plist
+ * IN: Property list identifier.
+ * @param filter
+ * IN: Filter to be modified to the pipeline.
+ * @param flags
+ * IN: Bit vector specifying certain general properties of the filter.
+ * @param cd_nelmts
+ * IN: Number of elements in cd_values
+ * @param cd_values
+ * IN: Auxiliary data for the filter.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name or an array is null.
+ *
+ **/
public synchronized static native int H5Pmodify_filter(long plist, long filter, int flags, long cd_nelmts,
int[] cd_values) throws HDF5LibraryException, NullPointerException;
@@ -5844,9 +7563,37 @@ public class H5 implements java.io.Serializable {
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pall_filters_avail query to verify that all the filters set
+ * in the dataset creation property list are available currently.
+ *
+ * @param dcpl_id
+ * IN: Property list identifier.
+ *
+ * @return
+ * TRUE if all filters available
+ * FALSE if one or more filters not currently available.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native boolean H5Pall_filters_avail(long dcpl_id) throws HDF5LibraryException,
NullPointerException;
+ /**
+ * H5Premove_filter deletes a filter from the dataset creation property list;
+ * deletes all filters if filter is H5Z_FILTER_NONE
+ *
+ * @param obj_id
+ * IN: Property list identifier.
+ * @param filter
+ * IN: Filter identifier.
+ *
+ * @return a non-negative value and the size of the user block; if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native int H5Premove_filter(long obj_id, long filter) throws HDF5LibraryException;
/**
@@ -5864,6 +7611,18 @@ public class H5 implements java.io.Serializable {
**/
public synchronized static native int H5Pset_deflate(long plist, int level) throws HDF5LibraryException;
+ /**
+ * H5Pset_fletcher32 sets Fletcher32 checksum of EDC for a dataset creation
+ * property list or group creation property list.
+ *
+ * @param plist
+ * IN: Property list identifier.
+ *
+ * @return a non-negative value and the size of the user block; if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native int H5Pset_fletcher32(long plist) throws HDF5LibraryException,
NullPointerException;
@@ -6334,11 +8093,35 @@ public class H5 implements java.io.Serializable {
*/
public synchronized static native long H5Pget_driver(long plid) throws HDF5LibraryException;
- public synchronized static native long H5Pget_family_offset(long fapl_id) throws HDF5LibraryException,
- NullPointerException;
+ /**
+ * H5Pget_family_offset gets offset for family driver.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ *
+ * @return the offset.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
+ public synchronized static native long H5Pget_family_offset(long fapl_id) throws HDF5LibraryException;
- public synchronized static native int H5Pset_family_offset(long fapl_id, long offset) throws HDF5LibraryException,
- NullPointerException;
+ /**
+ * H5Pset_family_offset sets the offset for family driver.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ * @param offset
+ * IN: the offset value
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
+ public synchronized static native int H5Pset_family_offset(long fapl_id, long offset) throws HDF5LibraryException;
/**
* Retrieves the maximum possible number of elements in the meta data cache and the maximum possible number of bytes
@@ -6389,9 +8172,8 @@ public class H5 implements java.io.Serializable {
double rdcc_w0) throws HDF5LibraryException;
/**
- * H5Pget_mdc_config gets the initial metadata cache configuration contained in a file access property list and
- * loads it into the instance of H5AC_cache_config_t pointed to by the config_ptr parameter. This configuration is
- * used when the file is opened.
+ * H5Pget_mdc_config gets the initial metadata cache configuration contained in a file access property list.
+ * This configuration is used when the file is opened.
*
* @param plist_id
* IN: Identifier of the file access property list.
@@ -6403,6 +8185,19 @@ public class H5 implements java.io.Serializable {
**/
public synchronized static native H5AC_cache_config_t H5Pget_mdc_config(long plist_id) throws HDF5LibraryException;
+ /**
+ * H5Pset_mdc_config sets the initial metadata cache configuration contained in a file access property list and
+ * loads it into the instance of H5AC_cache_config_t pointed to by the config_ptr parameter. This configuration is
+ * used when the file is opened.
+ *
+ * @param plist_id
+ * IN: Identifier of the file access property list.
+ * @param config_ptr
+ * IN: H5AC_cache_config_t, the initial metadata cache configuration.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native void H5Pset_mdc_config(long plist_id, H5AC_cache_config_t config_ptr)
throws HDF5LibraryException;
@@ -6437,10 +8232,35 @@ public class H5 implements java.io.Serializable {
public synchronized static native int H5Pset_gc_references(long fapl_id, boolean gc_ref)
throws HDF5LibraryException;
- public synchronized static native int H5Pget_fclose_degree(long plist_id) throws HDF5LibraryException,
+ /**
+ * H5Pget_fclose_degree returns the degree for the file close behavior for a file access
+ * property list.
+ *
+ * @param fapl_id
+ * IN File access property list
+ *
+ * @return the degree for the file close behavior
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native int H5Pget_fclose_degree(long fapl_id) throws HDF5LibraryException,
NullPointerException;
- public synchronized static native int H5Pset_fclose_degree(long plist, int degree) throws HDF5LibraryException,
+ /**
+ * H5Pset_fclose_degree sets the degree for the file close behavior.
+ *
+ * @param fapl_id
+ * IN File access property list
+ * @param degree
+ * IN the degree for the file close behavior
+ *
+ * @return non-negative if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native int H5Pset_fclose_degree(long fapl_id, int degree) throws HDF5LibraryException,
NullPointerException;
/**
@@ -6471,8 +8291,40 @@ public class H5 implements java.io.Serializable {
**/
public synchronized static native void H5Pset_meta_block_size(long fapl_id, long size) throws HDF5LibraryException;
+ /**
+ * H5Pget_sieve_buf_size retrieves the current settings for the data sieve buffer size
+ * property from a file access property list.
+ *
+ * @param fapl_id
+ * IN: Identifier for property list to query.
+ *
+ * @return a non-negative value and the size of the user block; if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native long H5Pget_sieve_buf_size(long fapl_id) throws HDF5LibraryException;
+ /**
+ * H5Pset_sieve_buf_size Sets the maximum size of the data seive buffer used for file
+ * drivers which are capable of using data sieving. The data sieve
+ * buffer is used when performing I/O on datasets in the file. Using a
+ * buffer which is large anough to hold several pieces of the dataset
+ * being read in for hyperslab selections boosts performance by quite a
+ * bit.
+ * <p>
+ * The default value is set to 64KB, indicating that file I/O for raw data
+ * reads and writes will occur in at least 64KB blocks. Setting the value to 0
+ * with this function will turn off the data sieving
+ *
+ * @param fapl_id
+ * IN: Identifier of property list to modify.
+ * @param size
+ * IN: maximum size of the data seive buffer.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native void H5Pset_sieve_buf_size(long fapl_id, long size) throws HDF5LibraryException;
/**
@@ -6687,6 +8539,55 @@ public class H5 implements java.io.Serializable {
public synchronized static native void H5Pset_evict_on_close(long fapl_id, boolean evict_on_close)
throws HDF5LibraryException;
+ /**
+ * H5Pget_use_file_locking retrieves whether we are using file locking.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ *
+ * @return indication if file locking is used.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
+ public synchronized static native boolean H5Pget_use_file_locking(long fapl_id)
+ throws HDF5LibraryException;
+
+ /**
+ * H5Pget_use_file_locking retrieves whether we ignore file locks when they are disabled.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ *
+ * @return indication if file locking is ignored.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
+ public synchronized static native boolean H5Pget_ignore_disabled_file_locking(long fapl_id)
+ throws HDF5LibraryException;
+
+ /**
+ * H5Pset_file_locking sets parameters related to file locking.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ *
+ * @param use_file_locking
+ * IN: Whether the library will use file locking when opening files (mainly for SWMR semantics).
+ *
+ * @param ignore_when_disabled
+ * IN: Whether file locking will be ignored when disabled on a file system (useful for Lustre).
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
+ public synchronized static native void H5Pset_file_locking(long fapl_id, boolean use_file_locking, boolean ignore_when_disabled)
+ throws HDF5LibraryException;
+
// ///// unimplemented /////
// herr_t H5Pset_vol(hid_t plist_id, hid_t new_vol_id, const void *new_vol_info);
// herr_t H5Pget_vol_id(hid_t plist_id, hid_t *vol_id);
@@ -6767,6 +8668,25 @@ public class H5 implements java.io.Serializable {
public synchronized static native int H5Pset_chunk(long plist, int ndims, byte[] dim) throws HDF5LibraryException,
NullPointerException, IllegalArgumentException;
+ /**
+ * H5Pset_chunk sets the size of the chunks used to store a chunked layout dataset.
+ *
+ * @param plist
+ * IN: Identifier for property list to query.
+ * @param ndims
+ * IN: The number of dimensions of each chunk.
+ * @param dim
+ * IN: An array containing the size of each chunk.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5Exception
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - dims array is null.
+ * @exception IllegalArgumentException
+ * - dims &lt;=0
+ **/
public synchronized static int H5Pset_chunk(long plist, int ndims, long[] dim) throws HDF5Exception,
NullPointerException, IllegalArgumentException {
if (dim == null) {
@@ -7002,9 +8922,37 @@ public class H5 implements java.io.Serializable {
**/
public synchronized static native int H5Pget_external_count(long plist) throws HDF5LibraryException;
+ /**
+ * H5Pset_szip Sets up the use of the szip filter.
+ *
+ * @param plist
+ * IN: Dataset creation property list identifier.
+ * @param options_mask
+ * IN: Bit vector specifying certain general properties of the filter.
+ * @param pixels_per_block
+ * IN: Number of pixels in blocks
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pset_szip(long plist, int options_mask, int pixels_per_block)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pset_shuffle Sets up the use of the shuffle filter.
+ *
+ * @param plist_id
+ * IN: Dataset creation property list identifier.
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pset_shuffle(long plist_id) throws HDF5LibraryException,
NullPointerException;
@@ -7132,20 +9080,91 @@ public class H5 implements java.io.Serializable {
return retVal;
}
+ /**
+ * H5Pset_fill_value checks if the fill value is defined for a dataset creation property list.
+ *
+ * @param plist_id
+ * IN: Property list identifier.
+ * @param status
+ * IN: The fill value setting:
+ * H5D_FILL_VALUE_UNDEFINED
+ * H5D_FILL_VALUE_DEFAULT
+ * H5D_FILL_VALUE_USER_DEFINED
+ * H5D_FILL_VALUE_ERROR
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5Exception
+ * - Error converting data array
+ **/
public synchronized static native int H5Pfill_value_defined(long plist_id, int[] status)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pset_alloc_time Gets space allocation time for dataset during creation.
+ *
+ * @param plist_id
+ * IN: Dataset creation property list identifier.
+ * @param alloc_time
+ * OUT: allocation time.
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pget_alloc_time(long plist_id, int[] alloc_time)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pset_alloc_time Sets space allocation time for dataset during creation.
+ *
+ * @param plist_id
+ * IN: Dataset creation property list identifier.
+ * @param alloc_time
+ * IN: allocation time.
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pset_alloc_time(long plist_id, int alloc_time) throws HDF5LibraryException,
NullPointerException;
- public synchronized static native int H5Pget_fill_time(long plist_id, int[] fill_time) throws HDF5LibraryException,
- NullPointerException;
+ /**
+ * H5Pset_fill_time Gets fill value writing time.
+ *
+ * @param plist_id
+ * IN: Dataset creation property list identifier.
+ * @param fill_time
+ * OUT: fill time.
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
+ public synchronized static native int H5Pget_fill_time(long plist_id, int[] fill_time) throws HDF5LibraryException;
- public synchronized static native int H5Pset_fill_time(long plist_id, int fill_time) throws HDF5LibraryException,
- NullPointerException;
+ /**
+ * H5Pset_fill_time Sets the fill value writing time.
+ *
+ * @param plist_id
+ * IN: Dataset creation property list identifier.
+ * @param fill_time
+ * IN: fill time.
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
+ public synchronized static native int H5Pset_fill_time(long plist_id, int fill_time) throws HDF5LibraryException;
/**
* H5Pset_chunk_opts Sets the edge chunk option in a dataset creation property list.
@@ -7445,6 +9464,20 @@ public class H5 implements java.io.Serializable {
public synchronized static native int H5Pget_buffer(long plist, byte[] tconv, byte[] bkg)
throws HDF5LibraryException, IllegalArgumentException;
+ /**
+ * H5Pget_buffer_size gets type conversion and background buffer size, in bytes, if successful;
+ * otherwise 0 on failure.
+ *
+ * @param plist
+ * Identifier for the dataset transfer property list.
+ *
+ * @return buffer size, in bytes, if successful; otherwise 0 on failure
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception IllegalArgumentException
+ * - plist is invalid.
+ **/
public synchronized static native long H5Pget_buffer_size(long plist)
throws HDF5LibraryException, IllegalArgumentException;
@@ -7475,11 +9508,33 @@ public class H5 implements java.io.Serializable {
public synchronized static native void H5Pset_buffer_size(long plist, long size) throws HDF5LibraryException,
IllegalArgumentException;
- public synchronized static native int H5Pget_edc_check(long plist) throws HDF5LibraryException,
- NullPointerException;
+ /**
+ * H5Pget_edc_check gets the error-detecting algorithm in use.
+ *
+ * @param plist
+ * Identifier for the dataset transfer property list.
+ *
+ * @return the error-detecting algorithm
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native int H5Pget_edc_check(long plist) throws HDF5LibraryException;
- public synchronized static native int H5Pset_edc_check(long plist, int check) throws HDF5LibraryException,
- NullPointerException;
+ /**
+ * H5Pset_edc_check sets the error-detecting algorithm.
+ *
+ * @param plist
+ * Identifier for the dataset transfer property list.
+ * @param check
+ * the error-detecting algorithm to use.
+ *
+ * @return non-negative if succeed
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native int H5Pset_edc_check(long plist, int check) throws HDF5LibraryException;
/**
* H5Pget_btree_ratio Get the B-tree split ratios for a dataset transfer property list.
@@ -7524,9 +9579,46 @@ public class H5 implements java.io.Serializable {
public synchronized static native int H5Pset_btree_ratios(long plist_id, double left, double middle, double right)
throws HDF5LibraryException;
+ /**
+ * H5Pget_hyper_vector_size reads values previously set with H5Pset_hyper_vector_size.
+ *
+ * @param dxpl_id
+ * IN: Dataset transfer property list identifier.
+ * @param vector_size
+ * OUT: hyper vector size.
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pget_hyper_vector_size(long dxpl_id, long[] vector_size)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pset_hyper_vector_size sets the number of
+ * "I/O vectors" (offset and length pairs) which are to be
+ * accumulated in memory before being issued to the lower levels
+ * of the library for reading or writing the actual data.
+ * Increasing the number should give better performance, but use
+ * more memory during hyperslab I/O. The vector size must be
+ * greater than 1.
+ *,p.
+ * The default is to use 1024 vectors for I/O during hyperslab
+ * reading/writing.
+ *
+ * @param dxpl_id
+ * IN: Dataset transfer property list identifier.
+ * @param vector_size
+ * IN: hyper vestor size.
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pset_hyper_vector_size(long dxpl_id, long vector_size)
throws HDF5LibraryException, NullPointerException;
@@ -7724,8 +9816,32 @@ public class H5 implements java.io.Serializable {
// /////// String creation property list (STRCPL) routines ///////
+ /**
+ * H5Pget_char_encoding gets the character encoding of the string.
+ *
+ * @param plist_id
+ * IN: the property list identifier
+ *
+ * @return Returns the character encoding of the string.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pget_char_encoding(long plist_id) throws HDF5LibraryException;
+ /**
+ * H5Pset_char_encoding sets the character encoding of the string.
+ *
+ * @param plist_id
+ * IN: the property list identifier
+ * @param encoding
+ * IN: the character encoding of the string
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native void H5Pset_char_encoding(long plist_id, int encoding)
throws HDF5LibraryException;
@@ -7915,20 +10031,51 @@ public class H5 implements java.io.Serializable {
// /////// file drivers property list routines ///////
+ /**
+ * H5Pget_fapl_core retrieve H5FD_CORE I/O settings.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ * @param increment
+ * OUT: how much to grow the memory each time
+ * @param backing_store
+ * OUT: write to file name on flush setting
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native void H5Pget_fapl_core(long fapl_id, long[] increment, boolean[] backing_store)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pset_fapl_core modifies the file access property list to use the H5FD_CORE driver.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ * @param increment
+ * IN: how much to grow the memory each time
+ * @param backing_store
+ * IN: write to file name on flush setting
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pset_fapl_core(long fapl_id, long increment, boolean backing_store)
throws HDF5LibraryException, NullPointerException;
/**
- * H5Pget_fapl_direct Retrieve direct I/O settings.
+ * H5Pget_fapl_direct queries properties set by the H5Pset_fapl_direct.
*
* @param fapl_id
* IN: File access property list identifier
* @param info
- * OUT: Returned property list information info[0] = alignment Required memory alignment boundary info[1]
- * = block_size File system block size info[2] = cbuf_size Copy buffer size
+ * OUT: Returned property list information
+ * info[0] = increment -how much to grow the memory each time
+ * info[1] = backing_store - write to file name on flush setting
*
* @return a non-negative value if successful; otherwise returns a negative value.
*
@@ -7959,14 +10106,72 @@ public class H5 implements java.io.Serializable {
public synchronized static native int H5Pset_fapl_direct(long fapl_id, long alignment, long block_size,
long cbuf_size) throws HDF5LibraryException;
+ /**
+ * H5Pget_fapl_family Returns information about the family file access property list.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ * @param memb_size
+ * OUT: the size in bytes of each file member (used only when creating a new file)
+ * @param memb_fapl_id
+ * OUT: the file access property list to be used for each family member
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pget_fapl_family(long fapl_id, long[] memb_size, long[] memb_fapl_id)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pset_fapl_family Sets up use of the direct I/O driver.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ * @param memb_size
+ * IN: the size in bytes of each file member (used only when creating a new file)
+ * @param memb_fapl_id
+ * IN: the file access property list to be used for each family member
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pset_fapl_family(long fapl_id, long memb_size, long memb_fapl_id)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pset_fapl_hdfs Modify the file access property list to use the H5FD_HDFS driver.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ * @param fapl_conf
+ * IN: the properties of the hdfs driver
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pset_fapl_hdfs(long fapl_id, H5FD_hdfs_fapl_t fapl_conf) throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pget_fapl_hdfs gets the properties hdfs I/O driver.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ *
+ * @return the properties of the hdfs driver.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native H5FD_hdfs_fapl_t H5Pget_fapl_hdfs(long fapl_id) throws HDF5LibraryException, NullPointerException;
/**
@@ -8044,17 +10249,99 @@ public class H5 implements java.io.Serializable {
public synchronized static native void H5Pset_fapl_log(long fapl_id, String logfile, long flags, long buf_size)
throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pset_fapl_sec2 Sets up use of the sec2 I/O driver.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pset_fapl_sec2(long fapl_id) throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pset_fapl_split Sets up use of the split I/O driver. Makes the multi driver act like the
+ * old split driver which stored meta data in one file and raw
+ * data in another file
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ * @param meta_ext
+ * IN: meta filename extension
+ * @param meta_plist_id
+ * IN: File access property list identifier for metadata
+ * @param raw_ext
+ * IN: raw data filename extension
+ * @param raw_plist_id
+ * IN: File access property list identifier raw data
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native void H5Pset_fapl_split(long fapl_id, String meta_ext, long meta_plist_id,
String raw_ext, long raw_plist_id) throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pset_fapl_stdio Sets up use of the stdio I/O driver.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pset_fapl_stdio(long fapl_id) throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pset_fapl_windows Sets up use of the windows I/O driver.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pset_fapl_windows(long fapl_id) throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pset_fapl_ros3 Modify the file access property list to use the H5FD_ROS3 driver.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ * @param fapl_conf
+ * IN: the properties of the ros3 driver
+ *
+ * @return a non-negative value if successful; otherwise returns a negative value.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native int H5Pset_fapl_ros3(long fapl_id, H5FD_ros3_fapl_t fapl_conf) throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Pget_fapl_ros3 gets the properties of the ros3 I/O driver.
+ *
+ * @param fapl_id
+ * IN: File access property list identifier
+ *
+ * @return the properties of the ros3 driver.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ *
+ **/
public synchronized static native H5FD_ros3_fapl_t H5Pget_fapl_ros3(long fapl_id) throws HDF5LibraryException, NullPointerException;
// /////// unimplemented ////////
@@ -8762,50 +11049,7 @@ public class H5 implements java.io.Serializable {
// //
// ////////////////////////////////////////////////////////////
- /**
- * H5Sclose releases a dataspace.
- *
- * @param space_id
- * Identifier of dataspace to release.
- *
- * @return a non-negative value if successful
- *
- * @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
- **/
- public static int H5Sclose(long space_id) throws HDF5LibraryException {
- if (space_id < 0)
- return 0; // throw new HDF5LibraryException("Negative ID");;
-
- log.trace("OPEN_IDS: H5Sclose remove {}", space_id);
- OPEN_IDS.remove(space_id);
- log.trace("OPEN_IDS: {}", OPEN_IDS.size());
- return _H5Sclose(space_id);
- }
-
- private synchronized static native int _H5Sclose(long space_id) throws HDF5LibraryException;
-
- /**
- * H5Scopy creates a new dataspace which is an exact copy of the dataspace identified by space_id.
- *
- * @param space_id
- * Identifier of dataspace to copy.
- * @return a dataspace identifier if successful
- *
- * @exception HDF5LibraryException
- * - Error from the HDF-5 Library.
- **/
- public static long H5Scopy(long space_id) throws HDF5LibraryException {
- long id = _H5Scopy(space_id);
- if (id > 0) {
- log.trace("OPEN_IDS: H5Scopy add {}", id);
- OPEN_IDS.add(id);
- log.trace("OPEN_IDS: {}", OPEN_IDS.size());
- }
- return id;
- }
-
- private synchronized static native long _H5Scopy(long space_id) throws HDF5LibraryException;
+ /**************** Operations on dataspaces ********************/
/**
* H5Screate creates a new dataspace of a particular type.
@@ -8862,19 +11106,96 @@ public class H5 implements java.io.Serializable {
throws HDF5Exception, NullPointerException;
/**
- * H5Sdecode reconstructs the HDF5 data space object and returns a new object handle for it.
+ * H5Sset_extent_simple sets or resets the size of an existing dataspace.
*
- * @param buf
- * IN: Buffer for the data space object to be decoded.
+ * @param space_id
+ * Dataspace identifier.
+ * @param rank
+ * Rank, or dimensionality, of the dataspace.
+ * @param current_size
+ * Array containing current size of dataspace.
+ * @param maximum_size
+ * Array containing maximum size of dataspace.
*
- * @return a new object handle
+ * @return a dataspace identifier if successful
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
- * @exception NullPointerException
- * - buf is null.
**/
- public synchronized static native long H5Sdecode(byte[] buf) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native long H5Sset_extent_simple(long space_id, int rank, long[] current_size,
+ long[] maximum_size) throws HDF5LibraryException, NullPointerException;
+
+ /**
+ * H5Sset_extent_simple sets or resets the size of an existing dataspace.
+ *
+ * @param space_id
+ * Dataspace identifier.
+ * @param rank
+ * Rank, or dimensionality, of the dataspace.
+ * @param current_size
+ * Array containing current size of dataspace.
+ * @param maximum_size
+ * Array containing maximum size of dataspace.
+ *
+ * @return a dataspace identifier if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static long H5Sset_extent_simple(long space_id, int rank, byte[] current_size,
+ byte[] maximum_size) throws HDF5LibraryException, NullPointerException {
+ ByteBuffer csbb = ByteBuffer.wrap(current_size);
+ long[] lacs = (csbb.asLongBuffer()).array();
+ ByteBuffer maxsbb = ByteBuffer.wrap(maximum_size);
+ long[] lamaxs = (maxsbb.asLongBuffer()).array();
+
+ return H5Sset_extent_simple(space_id, rank, lacs, lamaxs);
+ }
+
+ /**
+ * H5Scopy creates a new dataspace which is an exact copy of the dataspace identified by space_id.
+ *
+ * @param space_id
+ * Identifier of dataspace to copy.
+ * @return a dataspace identifier if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public static long H5Scopy(long space_id) throws HDF5LibraryException {
+ long id = _H5Scopy(space_id);
+ if (id > 0) {
+ log.trace("OPEN_IDS: H5Scopy add {}", id);
+ OPEN_IDS.add(id);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ }
+ return id;
+ }
+
+ private synchronized static native long _H5Scopy(long space_id) throws HDF5LibraryException;
+
+ /**
+ * H5Sclose releases a dataspace.
+ *
+ * @param space_id
+ * Identifier of dataspace to release.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public static int H5Sclose(long space_id) throws HDF5LibraryException {
+ if (space_id < 0)
+ return 0; // throw new HDF5LibraryException("Negative ID");;
+
+ log.trace("OPEN_IDS: H5Sclose remove {}", space_id);
+ OPEN_IDS.remove(space_id);
+ log.trace("OPEN_IDS: {}", OPEN_IDS.size());
+ return _H5Sclose(space_id);
+ }
+
+ private synchronized static native int _H5Sclose(long space_id) throws HDF5LibraryException;
/**
* H5Sencode converts a data space description into binary form in a buffer.
@@ -8890,154 +11211,139 @@ public class H5 implements java.io.Serializable {
public synchronized static native byte[] H5Sencode(long obj_id) throws HDF5LibraryException, NullPointerException;
/**
- * H5Sextent_copy copies the extent from source_space_id to dest_space_id. This action may change the type of the
- * dataspace.
+ * H5Sdecode reconstructs the HDF5 data space object and returns a new object handle for it.
*
- * @param dest_space_id
- * IN: The identifier for the dataspace from which the extent is copied.
- * @param source_space_id
- * IN: The identifier for the dataspace to which the extent is copied.
+ * @param buf
+ * IN: Buffer for the data space object to be decoded.
*
- * @return a non-negative value if successful
+ * @return a new object handle
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - buf is null.
**/
- public synchronized static native int H5Sextent_copy(long dest_space_id, long source_space_id)
- throws HDF5LibraryException;
+ public synchronized static native long H5Sdecode(byte[] buf) throws HDF5LibraryException, NullPointerException;
/**
- * H5Sextent_equal determines whether the dataspace extents of two dataspaces, space1_id and space2_id, are equal.
+ * H5Sget_simple_extent_npoints determines the number of elements in a dataspace.
*
- * @param first_space_id
- * IN: The identifier for the first dataspace.
- * @param second_space_id
- * IN: The identifier for the seconddataspace.
+ * @param space_id
+ * ID of the dataspace object to query
+ * @return the number of elements in the dataspace if successful
*
- * @return true if successful, else false
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native long H5Sget_simple_extent_npoints(long space_id) throws HDF5LibraryException;
+
+ /**
+ * H5Sget_simple_extent_ndims determines the dimensionality (or rank) of a dataspace.
+ *
+ * @param space_id
+ * IN: Identifier of the dataspace
+ *
+ * @return the number of dimensions in the dataspace if successful
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
**/
- public synchronized static native boolean H5Sextent_equal(long first_space_id, long second_space_id)
- throws HDF5LibraryException;
+ public synchronized static native int H5Sget_simple_extent_ndims(long space_id) throws HDF5LibraryException;
/**
- * H5Sget_select_bounds retrieves the coordinates of the bounding box containing the current selection and places
- * them into user-supplied buffers.
- * <P>
- * The start and end buffers must be large enough to hold the dataspace rank number of coordinates.
+ * H5Sget_simple_extent_dims returns the size and maximum sizes of each dimension of a dataspace through the dims
+ * and maxdims parameters.
*
- * @param spaceid
- * Identifier of dataspace to release.
- * @param start
- * coordinates of lowest corner of bounding box.
- * @param end
- * coordinates of highest corner of bounding box.
+ * @param space_id
+ * IN: Identifier of the dataspace object to query
+ * @param dims
+ * OUT: Pointer to array to store the size of each dimension.
+ * @param maxdims
+ * OUT: Pointer to array to store the maximum size of each dimension.
*
- * @return a non-negative value if successful,with start and end initialized.
+ * @return the number of dimensions in the dataspace if successful
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
* @exception NullPointerException
- * - start or end is null.
+ * - dims or maxdims is null.
**/
- public synchronized static native int H5Sget_select_bounds(long spaceid, long[] start, long[] end)
+ public synchronized static native int H5Sget_simple_extent_dims(long space_id, long[] dims, long[] maxdims)
throws HDF5LibraryException, NullPointerException;
/**
- * H5Sget_select_elem_npoints returns the number of element points in the current dataspace selection.
+ * H5Sis_simple determines whether a dataspace is a simple dataspace.
*
- * @param spaceid
- * Identifier of dataspace to release.
+ * @param space_id
+ * Identifier of the dataspace to query
*
- * @return a non-negative value if successful
+ * @return true if is a simple dataspace
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
**/
- public synchronized static native long H5Sget_select_elem_npoints(long spaceid) throws HDF5LibraryException;
+ public synchronized static native boolean H5Sis_simple(long space_id) throws HDF5LibraryException;
/**
- * H5Sget_select_elem_pointlist returns an array of of element points in the current dataspace selection. The point
- * coordinates have the same dimensionality (rank) as the dataspace they are located within, one coordinate per
- * point.
+ * H5Sget_simple_extent_type queries a dataspace to determine the current class of a dataspace.
*
- * @param spaceid
- * Identifier of dataspace to release.
- * @param startpoint
- * first point to retrieve
- * @param numpoints
- * number of points to retrieve
- * @param buf
- * returns points startblock to startblock+num-1, each points is <i>rank</i> longs.
+ * @param space_id
+ * Dataspace identifier.
*
- * @return a non-negative value if successful
+ * @return a dataspace class name if successful
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
- * @exception NullPointerException
- * - buf is null.
**/
- public synchronized static native int H5Sget_select_elem_pointlist(long spaceid, long startpoint, long numpoints,
- long[] buf) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Sget_simple_extent_type(long space_id) throws HDF5LibraryException;
/**
- * H5Sget_select_hyper_blocklist returns an array of hyperslab blocks. The block coordinates have the same
- * dimensionality (rank) as the dataspace they are located within. The list of blocks is formatted as follows:
- *
- * <pre>
- * &lt;"start" coordinate&gt;, immediately followed by
- * &lt;"opposite" corner coordinate&gt;, followed by
- * the next "start" and "opposite" coordinates,
- * etc.
- * until all of the selected blocks have been listed.
- * </pre>
+ * H5Sset_extent_none removes the extent from a dataspace and sets the type to H5S_NONE.
*
- * @param spaceid
- * Identifier of dataspace to release.
- * @param startblock
- * first block to retrieve
- * @param numblocks
- * number of blocks to retrieve
- * @param buf
- * returns blocks startblock to startblock+num-1, each block is <i>rank</i> * 2 (corners) longs.
+ * @param space_id
+ * The identifier for the dataspace from which the extent is to be removed.
*
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
- * @exception NullPointerException
- * - buf is null.
**/
- public synchronized static native int H5Sget_select_hyper_blocklist(long spaceid, long startblock, long numblocks,
- long[] buf) throws HDF5LibraryException, NullPointerException;
+ public synchronized static native int H5Sset_extent_none(long space_id) throws HDF5LibraryException;
/**
- * H5Sget_select_hyper_nblocks returns the number of hyperslab blocks in the current dataspace selection.
+ * H5Sextent_copy copies the extent from source_space_id to dest_space_id. This action may change the type of the
+ * dataspace.
*
- * @param spaceid
- * Identifier of dataspace to release.
+ * @param dest_space_id
+ * IN: The identifier for the dataspace from which the extent is copied.
+ * @param source_space_id
+ * IN: The identifier for the dataspace to which the extent is copied.
*
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
**/
- public synchronized static native long H5Sget_select_hyper_nblocks(long spaceid) throws HDF5LibraryException;
+ public synchronized static native int H5Sextent_copy(long dest_space_id, long source_space_id)
+ throws HDF5LibraryException;
/**
- * H5Sget_select_npoints determines the number of elements in the current selection of a dataspace.
+ * H5Sextent_equal determines whether the dataspace extents of two dataspaces, space1_id and space2_id, are equal.
*
- * @param space_id
- * IN: Identifier of the dataspace object to query
+ * @param first_space_id
+ * IN: The identifier for the first dataspace.
+ * @param second_space_id
+ * IN: The identifier for the seconddataspace.
*
- * @return the number of elements in the selection if successful
+ * @return true if successful, else false
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
**/
- public synchronized static native long H5Sget_select_npoints(long space_id) throws HDF5LibraryException;
+ public synchronized static native boolean H5Sextent_equal(long first_space_id, long second_space_id)
+ throws HDF5LibraryException;
+
+ /***************** Operations on dataspace selections *****************/
/**
* H5Sget_select_type retrieves the type of selection currently defined for the dataspace space_id.
@@ -9053,76 +11359,118 @@ public class H5 implements java.io.Serializable {
public synchronized static native int H5Sget_select_type(long space_id) throws HDF5LibraryException;
/**
- * H5Sget_simple_extent_dims returns the size and maximum sizes of each dimension of a dataspace through the dims
- * and maxdims parameters.
+ * H5Sget_select_npoints determines the number of elements in the current selection of a dataspace.
*
* @param space_id
* IN: Identifier of the dataspace object to query
- * @param dims
- * OUT: Pointer to array to store the size of each dimension.
- * @param maxdims
- * OUT: Pointer to array to store the maximum size of each dimension.
*
- * @return the number of dimensions in the dataspace if successful
+ * @return the number of elements in the selection if successful
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
- * @exception NullPointerException
- * - dims or maxdims is null.
**/
- public synchronized static native int H5Sget_simple_extent_dims(long space_id, long[] dims, long[] maxdims)
- throws HDF5LibraryException, NullPointerException;
+ public synchronized static native long H5Sget_select_npoints(long space_id) throws HDF5LibraryException;
/**
- * H5Sget_simple_extent_ndims determines the dimensionality (or rank) of a dataspace.
+ * H5Sselect_copy copies all the selection information (including offset) from the source
+ * dataspace to the destination dataspace.
+ * @param dst_id ID of the destination dataspace
+ * @param src_id ID of the source dataspace
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native void H5Sselect_copy(long dst_id, long src_id) throws HDF5LibraryException;
+
+ /**
+ * H5Sselect_valid verifies that the selection for the dataspace.
*
* @param space_id
- * IN: Identifier of the dataspace
+ * The identifier for the dataspace in which the selection is being reset.
*
- * @return the number of dimensions in the dataspace if successful
+ * @return true if the selection is contained within the extent and FALSE if it is not or is an error.
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
**/
- public synchronized static native int H5Sget_simple_extent_ndims(long space_id) throws HDF5LibraryException;
+ public synchronized static native boolean H5Sselect_valid(long space_id) throws HDF5LibraryException;
/**
- * H5Sget_simple_extent_npoints determines the number of elements in a dataspace.
+ * H5Sselect_adjust moves a selection by subtracting an offset from it.
*
* @param space_id
- * ID of the dataspace object to query
- * @return the number of elements in the dataspace if successful
+ * ID of dataspace to adjust
+ * @param offset
+ * Offset to subtract
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - offset is null.
**/
- public synchronized static native long H5Sget_simple_extent_npoints(long space_id) throws HDF5LibraryException;
+ public synchronized static native void H5Sselect_adjust(long space_id, long[][] offset)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Sget_simple_extent_type queries a dataspace to determine the current class of a dataspace.
+ * H5Sget_select_bounds retrieves the coordinates of the bounding box containing the current selection and places
+ * them into user-supplied buffers.
+ * <P>
+ * The start and end buffers must be large enough to hold the dataspace rank number of coordinates.
*
* @param space_id
- * Dataspace identifier.
+ * Identifier of dataspace to release.
+ * @param start
+ * coordinates of lowest corner of bounding box.
+ * @param end
+ * coordinates of highest corner of bounding box.
*
- * @return a dataspace class name if successful
+ * @return a non-negative value if successful,with start and end initialized.
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - start or end is null.
**/
- public synchronized static native int H5Sget_simple_extent_type(long space_id) throws HDF5LibraryException;
+ public synchronized static native int H5Sget_select_bounds(long space_id, long[] start, long[] end)
+ throws HDF5LibraryException, NullPointerException;
/**
- * H5Sis_simple determines whether a dataspace is a simple dataspace.
+ * H5Sselect_shape_same checks to see if the current selection in the dataspaces are the same
+ * dimensionality and shape.
+ * This is primarily used for reading the entire selection in one swoop.
+ *
+ * @param space1_id ID of 1st Dataspace pointer to compare
+ * @param space2_id ID of 2nd Dataspace pointer to compare
+ *
+ * @return true if the selection is the same dimensionality and shape;
+ * false otherwise
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native boolean H5Sselect_shape_same(long space1_id, long space2_id) throws HDF5LibraryException;
+
+ /**
+ * H5Sselect_intersect_block checks to see if the current selection in the
+ * dataspace intersects with the block given.
*
* @param space_id
- * Identifier of the dataspace to query
+ * ID of dataspace pointer to compare
+ * @param start
+ * Starting coordinate of block
+ * @param end
+ * Opposite ("ending") coordinate of block
*
- * @return true if is a simple dataspace
+ * @return a TRUE if the current selection in the dataspace intersects with the block given
+ * FALSE otherwise
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - offset is null.
**/
- public synchronized static native boolean H5Sis_simple(long space_id) throws HDF5LibraryException;
+ public synchronized static native boolean H5Sselect_intersect_block(long space_id, long[] start, long[] end)
+ throws HDF5LibraryException, NullPointerException;
/**
* H5Soffset_simple sets the offset of a simple dataspace space_id.
@@ -9142,6 +11490,21 @@ public class H5 implements java.io.Serializable {
public synchronized static native int H5Soffset_simple(long space_id, byte[] offset) throws HDF5LibraryException,
NullPointerException;
+ /**
+ * H5Soffset_simple sets the offset of a simple dataspace space_id.
+ *
+ * @param space_id
+ * IN: The identifier for the dataspace object to reset.
+ * @param offset
+ * IN: The offset at which to position the selection.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - offset array is null.
+ **/
public synchronized static int H5Soffset_simple(long space_id, long[] offset) throws HDF5Exception,
NullPointerException {
if (offset == null) {
@@ -9172,6 +11535,18 @@ public class H5 implements java.io.Serializable {
public synchronized static native int H5Sselect_all(long space_id) throws HDF5LibraryException;
/**
+ * H5Sselect_none resets the selection region for the dataspace space_id to include no elements.
+ *
+ * @param space_id
+ * IN: The identifier of the dataspace to be reset.
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native int H5Sselect_none(long space_id) throws HDF5LibraryException;
+
+ /**
* H5Sselect_elements selects array elements to be included in the selection for the space_id dataspace.
*
* @param space_id
@@ -9229,6 +11604,43 @@ public class H5 implements java.io.Serializable {
}
/**
+ * H5Sget_select_elem_npoints returns the number of element points in the current dataspace selection.
+ *
+ * @param spaceid
+ * Identifier of dataspace to release.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native long H5Sget_select_elem_npoints(long spaceid) throws HDF5LibraryException;
+
+ /**
+ * H5Sget_select_elem_pointlist returns an array of of element points in the current dataspace selection. The point
+ * coordinates have the same dimensionality (rank) as the dataspace they are located within, one coordinate per
+ * point.
+ *
+ * @param spaceid
+ * Identifier of dataspace to release.
+ * @param startpoint
+ * first point to retrieve
+ * @param numpoints
+ * number of points to retrieve
+ * @param buf
+ * returns points startblock to startblock+num-1, each points is <i>rank</i> longs.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - buf is null.
+ **/
+ public synchronized static native int H5Sget_select_elem_pointlist(long spaceid, long startpoint, long numpoints,
+ long[] buf) throws HDF5LibraryException, NullPointerException;
+
+ /**
* H5Sselect_hyperslab selects a hyperslab region to add to the current selected region for the dataspace specified
* by space_id. The start, stride, count, and block arrays must be the same size as the rank of the dataspace.
*
@@ -9268,76 +11680,118 @@ public class H5 implements java.io.Serializable {
return H5Sselect_hyperslab(space_id, op, lastart, lastride, lacount, lablock);
}
- public synchronized static native int H5Sselect_hyperslab(long space_id, int op, long[] start, long[] stride,
- long[] count, long[] block) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
-
/**
- * H5Sselect_none resets the selection region for the dataspace space_id to include no elements.
+ * H5Sselect_hyperslab selects a hyperslab region to add to the current selected region for the dataspace specified
+ * by space_id. The start, stride, count, and block arrays must be the same size as the rank of the dataspace.
*
* @param space_id
- * IN: The identifier of the dataspace to be reset.
+ * IN: Identifier of dataspace selection to modify
+ * @param op
+ * IN: Operation to perform on current selection.
+ * @param start
+ * IN: Offset of start of hyperslab
+ * @param stride
+ * IN: Hyperslab stride.
+ * @param count
+ * IN: Number of blocks included in hyperslab.
+ * @param block
+ * IN: Size of block in hyperslab.
+ *
* @return a non-negative value if successful
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - an input array is null.
+ * @exception IllegalArgumentException
+ * - an input array is invalid.
**/
- public synchronized static native int H5Sselect_none(long space_id) throws HDF5LibraryException;
+ public synchronized static native int H5Sselect_hyperslab(long space_id, int op, long[] start, long[] stride,
+ long[] count, long[] block) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+
/**
- * H5Sselect_valid verifies that the selection for the dataspace.
+ * H5Scombine_hyperslab combines a hyperslab selection with the current selection for a dataspace,
+ * creating a new dataspace to return the generated selection.
+ * If the current selection is not a hyperslab, it is freed and the hyperslab
+ * parameters passed in are combined with the H5S_SEL_ALL hyperslab (ie. a
+ * selection composing the entire current extent). If STRIDE or BLOCK is
+ * NULL, they are assumed to be set to all '1'.
*
* @param space_id
- * The identifier for the dataspace in which the selection is being reset.
+ * IN: Dataspace ID of selection to use
+ * @param op
+ * IN: Operation to perform on current selection.
+ * @param start
+ * IN: Offset of start of hyperslab
+ * @param stride
+ * IN: Hyperslab stride.
+ * @param count
+ * IN: Number of blocks included in hyperslab.
+ * @param block
+ * IN: Size of block in hyperslab.
*
- * @return true if the selection is contained within the extent and FALSE if it is not or is an error.
+ * @return a dataspace ID on success / H5I_INVALID_HID on failure
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - an input array is null.
+ * @exception IllegalArgumentException
+ * - an input array is invalid.
+ **/
+ public synchronized static native long H5Scombine_hyperslab(long space_id, int op, long[] start, long[] stride,
+ long[] count, long[] block) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+
+ /**
+ * H5Smodify_select refine an existing hyperslab selection with an operation, using a second
+ * hyperslab. The first selection is modified to contain the result of
+ * space1 operated on by space2.
+ *
+ * @param space1_id
+ * ID of the destination dataspace
+ * @param op
+ * Operation to perform on current selection.
+ * @param space2_id
+ * ID of the source dataspace
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
**/
- public synchronized static native boolean H5Sselect_valid(long space_id) throws HDF5LibraryException;
+ public synchronized static native void H5Smodify_select(long space1_id, int op, long space2_id) throws HDF5LibraryException;
/**
- * H5Sset_extent_none removes the extent from a dataspace and sets the type to H5S_NONE.
+ * H5Scombine_select combines two existing hyperslab selections with an operation, returning
+ * a new dataspace with the resulting selection. The dataspace extent from
+ * space1 is copied for the dataspace extent of the newly created dataspace.
*
- * @param space_id
- * The identifier for the dataspace from which the extent is to be removed.
+ * @param space1_id
+ * ID of the first dataspace
+ * @param op
+ * Operation to perform on current selection.
+ * @param space2_id
+ * ID of the second dataspace
*
- * @return a non-negative value if successful
+ * @return a dataspace ID on success / H5I_INVALID_HID on failure
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
**/
- public synchronized static native int H5Sset_extent_none(long space_id) throws HDF5LibraryException;
+ public synchronized static native long H5Scombine_select(long space1_id, int op, long space2_id) throws HDF5LibraryException;
/**
- * H5Sset_extent_simple sets or resets the size of an existing dataspace.
+ * H5Sis_regular_hyperslab retrieves a regular hyperslab selection for the dataspace specified
+ * by space_id.
*
* @param space_id
- * Dataspace identifier.
- * @param rank
- * Rank, or dimensionality, of the dataspace.
- * @param current_size
- * Array containing current size of dataspace.
- * @param maximum_size
- * Array containing maximum size of dataspace.
+ * IN: Identifier of dataspace selection to query
*
- * @return a dataspace identifier if successful
+ * @return a TRUE/FALSE for hyperslab selection if successful
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
**/
- public synchronized static native long H5Sset_extent_simple(long space_id, int rank, long[] current_size,
- long[] maximum_size) throws HDF5LibraryException, NullPointerException;
-
- public synchronized static long H5Sset_extent_simple(long space_id, int rank, byte[] current_size,
- byte[] maximum_size) throws HDF5LibraryException, NullPointerException {
- ByteBuffer csbb = ByteBuffer.wrap(current_size);
- long[] lacs = (csbb.asLongBuffer()).array();
- ByteBuffer maxsbb = ByteBuffer.wrap(maximum_size);
- long[] lamaxs = (maxsbb.asLongBuffer()).array();
-
- return H5Sset_extent_simple(space_id, rank, lacs, lamaxs);
- }
+ public synchronized static native boolean H5Sis_regular_hyperslab(long space_id) throws HDF5LibraryException;
/**
* H5Sget_regular_hyperslab determines if a hyperslab selection is regular for the dataspace specified
@@ -9363,33 +11817,82 @@ public class H5 implements java.io.Serializable {
**/
public synchronized static native void H5Sget_regular_hyperslab(long space_id, long[] start, long[] stride, long[] count, long[] block) throws HDF5LibraryException, NullPointerException, IllegalArgumentException;
+ /**
+ * H5Sget_select_hyper_nblocks returns the number of hyperslab blocks in the current dataspace selection.
+ *
+ * @param spaceid
+ * Identifier of dataspace to release.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native long H5Sget_select_hyper_nblocks(long spaceid) throws HDF5LibraryException;
+
/**
- * H5Sis_regular_hyperslab retrieves a regular hyperslab selection for the dataspace specified
- * by space_id.
+ * H5Sget_select_hyper_blocklist returns an array of hyperslab blocks. The block coordinates have the same
+ * dimensionality (rank) as the dataspace they are located within. The list of blocks is formatted as follows:
*
- * @param space_id
- * IN: Identifier of dataspace selection to query
+ * <pre>
+ * &lt;"start" coordinate&gt;, immediately followed by
+ * &lt;"opposite" corner coordinate&gt;, followed by
+ * the next "start" and "opposite" coordinates,
+ * etc.
+ * until all of the selected blocks have been listed.
+ * </pre>
*
- * @return a TRUE/FALSE for hyperslab selection if successful
+ * @param spaceid
+ * Identifier of dataspace to release.
+ * @param startblock
+ * first block to retrieve
+ * @param numblocks
+ * number of blocks to retrieve
+ * @param buf
+ * returns blocks startblock to startblock+num-1, each block is <i>rank</i> * 2 (corners) longs.
+ *
+ * @return a non-negative value if successful
*
* @exception HDF5LibraryException
* - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - buf is null.
**/
- public synchronized static native boolean H5Sis_regular_hyperslab(long space_id) throws HDF5LibraryException;
+ public synchronized static native int H5Sget_select_hyper_blocklist(long spaceid, long startblock, long numblocks,
+ long[] buf) throws HDF5LibraryException, NullPointerException;
- // /////// unimplemented ////////
- // #ifdef NEW_HYPERSLAB_API
- // hid_t H5Scombine_hyperslab(hid_t space_id, H5S_seloper_t op,
- // const hsize_t start[],
- // const hsize_t _stride[],
- // const hsize_t count[],
- // const hsize_t _block[]);
- // herr_t H5Sselect_select(hid_t space1_id, H5S_seloper_t op,
- // hid_t space2_id);
- // hid_t H5Scombine_select(hid_t space1_id, H5S_seloper_t op,
- // hid_t space2_id);
- // #endif /* NEW_HYPERSLAB_API */
- // herr_t H5Sselect_copy(hid_t dst_id, hid_t src_id);
+ /**
+ * H5Sselect_project_intersection projects the intersection of the selections of src_space_id and
+ * src_intersect_space_id within the selection of src_space_id as a
+ * selection within the selection of dst_space_id.
+ *
+ * @param src_space_id
+ * Selection that is mapped to dst_space_id, and intersected with src_intersect_space_id
+ * @param dst_space_id
+ * Selection that is mapped to src_space_id
+ * @param src_intersect_space_id
+ * Selection whose intersection with src_space_id is projected to dst_space_id to obtain the result
+ *
+ * @return a dataspace with a selection equal to the intersection of
+ * src_intersect_space_id and src_space_id projected from src_space to dst_space on success
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native long H5Sselect_project_intersection(long src_space_id, long dst_space_id,
+ long src_intersect_space_id) throws HDF5LibraryException;
+
+
+ // /////// unimplemented ////////
+ ///// Operations on dataspace selections /////
+
+ //
+ ///// Operations on dataspace selection iterators /////
+ //public synchronized static native H5Ssel_iter_create(hid_t spaceid, size_t elmt_size, unsigned flags);
+ //public synchronized static native H5Ssel_iter_get_seq_list(hid_t sel_iter_id, size_t maxseq, size_t maxbytes, size_t *nseq,
+ // size_t *nbytes, hsize_t *off, size_t *len);
+ //public synchronized static native H5Ssel_iter_reset(hid_t sel_iter_id, hid_t space_id);
+ //public synchronized static native H5Ssel_iter_close(hid_t sel_iter_id);
@@ -9737,6 +12240,23 @@ public class H5 implements java.io.Serializable {
return H5Tenum_insert_int(type, name, value);
}
+ /**
+ * H5Tenum_insert inserts a new enumeration datatype member into an enumeration datatype.
+ *
+ * @param type
+ * IN: Identifier of datatype.
+ * @param name
+ * IN: The name of the member
+ * @param value
+ * IN: The value of the member, data of the correct type
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ * @exception NullPointerException
+ * - name is null.
+ **/
public static int H5Tenum_insert(long type, String name, int value) throws HDF5LibraryException,
NullPointerException {
int[] val = { value };
@@ -10893,15 +13413,128 @@ public class H5 implements java.io.Serializable {
// ////////////////////////////////////////////////////////////
/// VOL Connector Functionality
+ /**
+ * H5VLregister_connector_by_name registers a new VOL connector as a member of the virtual object layer class.
+ *
+ * @param connector_name
+ * IN: name of the connector.
+ * @param vipl_id
+ * IN: VOL initialization property list which must be
+ * created with H5Pcreate(H5P_VOL_INITIALIZE) (or H5P_DEFAULT).
+ *
+ * @return a VOL connector ID
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native long H5VLregister_connector_by_name(String connector_name, long vipl_id);
+ /**
+ * H5VLregister_connector_by_value registers a new VOL connector as a member of the virtual object layer class.
+ *
+ * @param connector_value
+ * IN: value of the connector.
+ * @param vipl_id
+ * IN: VOL initialization property list which must be
+ * created with H5Pcreate(H5P_VOL_INITIALIZE) (or H5P_DEFAULT).
+ *
+ * @return a VOL connector ID
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native long H5VLregister_connector_by_value(int connector_value, long vipl_id);
+ /**
+ * H5VLis_connector_registered_by_name tests whether a VOL class has been registered.
+ *
+ * @param name
+ * IN: name of the connector.
+ *
+ * @return true if a VOL connector with that name has been registered
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native boolean H5VLis_connector_registered_by_name(String name);
+ /**
+ * H5VLis_connector_registered_by_value tests whether a VOL class has been registered.
+ *
+ * @param connector_value
+ * IN: value of the connector.
+ *
+ * @return true if a VOL connector with that value has been registered
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native boolean H5VLis_connector_registered_by_value(int connector_value);
+ /**
+ * H5VLget_connector_id retrieves the ID for a registered VOL connector for a given object.
+ *
+ * @param object_id
+ * IN: Identifier of the object.
+ *
+ * @return a VOL connector ID
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native long H5VLget_connector_id(long object_id);
+ /**
+ * H5VLget_connector_id_by_name retrieves the ID for a registered VOL connector.
+ *
+ * @param name
+ * IN: name of the connector.
+ *
+ * @return a VOL connector ID
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native long H5VLget_connector_id_by_name(String name);
+ /**
+ * H5VLget_connector_id_by_value retrieves the ID for a registered VOL connector.
+ *
+ * @param connector_value
+ * IN: value of the connector.
+ *
+ * @return a VOL connector ID
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native long H5VLget_connector_id_by_value(int connector_value);
+ /**
+ * H5VLget_connector_name returns the connector name for the VOL associated with the
+ * object or file ID.
+ *
+ * @param object_id
+ * IN: Identifier of the object.
+ *
+ * @return the connector name
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native String H5VLget_connector_name(long object_id);
+ /**
+ * H5VLclose closes a VOL connector ID.
+ *
+ * @param connector_id
+ * IN: Identifier of the connector.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native void H5VLclose(long connector_id);
+ /**
+ * H5VLunregister_connector removes a VOL connector ID from the library.
+ *
+ * @param connector_id
+ * IN: Identifier of the connector.
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native void H5VLunregister_connector(long connector_id);
// /////// unimplemented ////////
@@ -10914,11 +13547,44 @@ public class H5 implements java.io.Serializable {
// //
// ////////////////////////////////////////////////////////////
- public synchronized static native int H5Zfilter_avail(int filter) throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Zfilter_avail checks if a filter is available.
+ *
+ * @param filter
+ * IN: filter number.
+ *
+ * @return a non-negative(TRUE/FALSE) value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native int H5Zfilter_avail(int filter) throws HDF5LibraryException;
+ /**
+ * H5Zget_filter_info gets information about a pipeline data filter.
+ *
+ * @param filter
+ * IN: filter number.
+ *
+ * @return the filter information flags
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
public synchronized static native int H5Zget_filter_info(int filter) throws HDF5LibraryException;
- public synchronized static native int H5Zunregister(int filter) throws HDF5LibraryException, NullPointerException;
+ /**
+ * H5Zunregister unregisters a filter.
+ *
+ * @param filter
+ * IN: filter number.
+ *
+ * @return a non-negative value if successful
+ *
+ * @exception HDF5LibraryException
+ * - Error from the HDF-5 Library.
+ **/
+ public synchronized static native int H5Zunregister(int filter) throws HDF5LibraryException;
// /////// unimplemented ////////
diff --git a/java/src/hdf/hdf5lib/HDF5Constants.java b/java/src/hdf/hdf5lib/HDF5Constants.java
index 5801655..4125907 100644
--- a/java/src/hdf/hdf5lib/HDF5Constants.java
+++ b/java/src/hdf/hdf5lib/HDF5Constants.java
@@ -35,260 +35,650 @@ public class HDF5Constants {
// Get the HDF5 constants from the library //
// /////////////////////////////////////////////////////////////////////////
- public static final long H5_QUARTER_HADDR_MAX = H5_QUARTER_HADDR_MAX();
+ //public static final long H5_QUARTER_HADDR_MAX = H5_QUARTER_HADDR_MAX();
+ /** Special parameters for szip compression */
public static final int H5_SZIP_MAX_PIXELS_PER_BLOCK = H5_SZIP_MAX_PIXELS_PER_BLOCK();
+ /** Special parameters for szip compression */
public static final int H5_SZIP_NN_OPTION_MASK = H5_SZIP_NN_OPTION_MASK();
+ /** Special parameters for szip compression */
public static final int H5_SZIP_EC_OPTION_MASK = H5_SZIP_EC_OPTION_MASK();
+ /** Special parameters for szip compression */
public static final int H5_SZIP_ALLOW_K13_OPTION_MASK = H5_SZIP_ALLOW_K13_OPTION_MASK();
+ /** Special parameters for szip compression */
public static final int H5_SZIP_CHIP_OPTION_MASK = H5_SZIP_CHIP_OPTION_MASK();
+ /** indices on links, unknown index type */
public static final int H5_INDEX_UNKNOWN = H5_INDEX_UNKNOWN();
+ /** indices on links, index on names */
public static final int H5_INDEX_NAME = H5_INDEX_NAME();
+ /** indices on links, index on creation order */
public static final int H5_INDEX_CRT_ORDER = H5_INDEX_CRT_ORDER();
+ /** indices on links, number of indices defined */
public static final int H5_INDEX_N = H5_INDEX_N();
+ /** Common iteration orders, Unknown order */
public static final int H5_ITER_UNKNOWN = H5_ITER_UNKNOWN();
+ /** Common iteration orders, Increasing order */
public static final int H5_ITER_INC = H5_ITER_INC();
+ /** Common iteration orders, Decreasing order */
public static final int H5_ITER_DEC = H5_ITER_DEC();
+ /** Common iteration orders, No particular order, whatever is fastest */
public static final int H5_ITER_NATIVE = H5_ITER_NATIVE();
+ /** Common iteration orders, Number of iteration orders */
public static final int H5_ITER_N = H5_ITER_N();
+ /** */
public static final int H5AC_CURR_CACHE_CONFIG_VERSION = H5AC_CURR_CACHE_CONFIG_VERSION();
+ /** */
public static final int H5AC_MAX_TRACE_FILE_NAME_LEN = H5AC_MAX_TRACE_FILE_NAME_LEN();
+ /** */
public static final int H5AC_METADATA_WRITE_STRATEGY_PROCESS_ZERO_ONLY = H5AC_METADATA_WRITE_STRATEGY_PROCESS_ZERO_ONLY();
+ /** */
public static final int H5AC_METADATA_WRITE_STRATEGY_DISTRIBUTED = H5AC_METADATA_WRITE_STRATEGY_DISTRIBUTED();
+ /** */
public static final int H5C_incr_off = H5C_incr_off();
+ /** */
public static final int H5C_incr_threshold = H5C_incr_threshold();
+ /** */
public static final int H5C_flash_incr_off = H5C_flash_incr_off();
+ /** */
public static final int H5C_flash_incr_add_space = H5C_flash_incr_add_space();
+ /** */
public static final int H5C_decr_off = H5C_decr_off();
+ /** */
public static final int H5C_decr_threshold = H5C_decr_threshold();
+ /** */
public static final int H5C_decr_age_out = H5C_decr_age_out();
+ /** */
public static final int H5C_decr_age_out_with_threshold = H5C_decr_age_out_with_threshold();
+ /** */
public static final int H5D_CHUNK_IDX_BTREE = H5D_CHUNK_IDX_BTREE();
+ /** */
public static final int H5D_ALLOC_TIME_DEFAULT = H5D_ALLOC_TIME_DEFAULT();
+ /** */
public static final int H5D_ALLOC_TIME_EARLY = H5D_ALLOC_TIME_EARLY();
+ /** */
public static final int H5D_ALLOC_TIME_ERROR = H5D_ALLOC_TIME_ERROR();
+ /** */
public static final int H5D_ALLOC_TIME_INCR = H5D_ALLOC_TIME_INCR();
+ /** */
public static final int H5D_ALLOC_TIME_LATE = H5D_ALLOC_TIME_LATE();
+ /** */
public static final int H5D_FILL_TIME_ERROR = H5D_FILL_TIME_ERROR();
+ /** */
public static final int H5D_FILL_TIME_ALLOC = H5D_FILL_TIME_ALLOC();
+ /** */
public static final int H5D_FILL_TIME_NEVER = H5D_FILL_TIME_NEVER();
+ /** */
public static final int H5D_FILL_TIME_IFSET = H5D_FILL_TIME_IFSET();
+ /** */
public static final int H5D_FILL_VALUE_DEFAULT = H5D_FILL_VALUE_DEFAULT();
+ /** */
public static final int H5D_FILL_VALUE_ERROR = H5D_FILL_VALUE_ERROR();
+ /** */
public static final int H5D_FILL_VALUE_UNDEFINED = H5D_FILL_VALUE_UNDEFINED();
+ /** */
public static final int H5D_FILL_VALUE_USER_DEFINED = H5D_FILL_VALUE_USER_DEFINED();
+ /** */
public static final int H5D_LAYOUT_ERROR = H5D_LAYOUT_ERROR();
+ /** */
public static final int H5D_CHUNKED = H5D_CHUNKED();
+ /** */
public static final int H5D_COMPACT = H5D_COMPACT();
+ /** */
public static final int H5D_CONTIGUOUS = H5D_CONTIGUOUS();
+ /** */
public static final int H5D_VIRTUAL = H5D_VIRTUAL();
+ /** */
public static final int H5D_NLAYOUTS = H5D_NLAYOUTS();
+ /** */
public static final int H5D_SPACE_STATUS_ALLOCATED = H5D_SPACE_STATUS_ALLOCATED();
+ /** */
public static final int H5D_SPACE_STATUS_ERROR = H5D_SPACE_STATUS_ERROR();
+ /** */
public static final int H5D_SPACE_STATUS_NOT_ALLOCATED = H5D_SPACE_STATUS_NOT_ALLOCATED();
+ /** */
public static final int H5D_SPACE_STATUS_PART_ALLOCATED = H5D_SPACE_STATUS_PART_ALLOCATED();
+ /** */
public static final int H5D_VDS_ERROR = H5D_VDS_ERROR();
+ /** */
public static final int H5D_VDS_FIRST_MISSING = H5D_VDS_FIRST_MISSING();
+ /** */
public static final int H5D_VDS_LAST_AVAILABLE = H5D_VDS_LAST_AVAILABLE();
+ /** */
public static final int H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS = H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS();
+ /** Different kinds of error information - H5E_type_t */
public static final int H5E_MAJOR = H5E_MAJOR();
+ /** Different kinds of error information - H5E_type_t */
public static final int H5E_MINOR = H5E_MINOR();
+ /** Minor error codes - Object header related errors - Alignment error */
public static final long H5E_ALIGNMENT = H5E_ALIGNMENT();
+ /** Minor error codes - Resource errors - Object already exists */
public static final long H5E_ALREADYEXISTS = H5E_ALREADYEXISTS();
+ /** Minor error codes - Function entry/exit interface - Object already initialized */
public static final long H5E_ALREADYINIT = H5E_ALREADYINIT();
+ /** Major error codes - Invalid arguments to routine */
public static final long H5E_ARGS = H5E_ARGS();
- public static final long H5E_ATOM = H5E_ATOM();
+ /** Major error codes - Object ID */
+ public static final long H5E_ID = H5E_ID();
+ /** Major error codes - Attribute */
public static final long H5E_ATTR = H5E_ATTR();
- public static final long H5E_BADATOM = H5E_BADATOM();
+ /** Minor error codes - Object ID related errors - Unable to find ID information (already closed?) */
+ public static final long H5E_BADID = H5E_BADID();
+ /** Minor error codes - File accessibility errors - Bad file ID accessed */
public static final long H5E_BADFILE = H5E_BADFILE();
+ /** Minor error codes - Object ID related errors - Unable to find ID group information */
public static final long H5E_BADGROUP = H5E_BADGROUP();
+ /** Minor error codes - Object header related errors - Iteration failed */
+ public static final long H5E_BADITER = H5E_BADITER();
+ /** Minor error codes - Object header related errors - Unrecognized message */
public static final long H5E_BADMESG = H5E_BADMESG();
+ /** Minor error codes - Argument errors - Out of range */
public static final long H5E_BADRANGE = H5E_BADRANGE();
+ /** Minor error codes - Dataspace errors - Invalid selection */
public static final long H5E_BADSELECT = H5E_BADSELECT();
+ /** Datatype conversion errors - Bad size for object */
public static final long H5E_BADSIZE = H5E_BADSIZE();
+ /** Minor error codes - Argument errors - Inappropriate type */
public static final long H5E_BADTYPE = H5E_BADTYPE();
+ /** Minor error codes - Argument errors - Bad value */
public static final long H5E_BADVALUE = H5E_BADVALUE();
+ /** Major error codes - B-Tree node */
public static final long H5E_BTREE = H5E_BTREE();
+ /** Major error codes - Object cache */
public static final long H5E_CACHE = H5E_CACHE();
+ /** I/O pipeline errors - Callback failed */
public static final long H5E_CALLBACK = H5E_CALLBACK();
+ /** I/O pipeline errors - Error from filter 'can apply' callback */
public static final long H5E_CANAPPLY = H5E_CANAPPLY();
- // public static final long H5E_CANTALLOC = H5E_CANTALLOC();
+ /** Minor error codes - Resource errors - Can't allocate space */
+ public static final long H5E_CANTALLOC = H5E_CANTALLOC();
+ /** Minor error codes - Dataspace errors - Can't append object */
+ public static final long H5E_CANTAPPEND = H5E_CANTAPPEND();
+ /** Minor error codes - Heap errors - Can't attach object */
+ public static final long H5E_CANTATTACH = H5E_CANTATTACH();
+ /** Minor error codes - Cache related errors - Unable to mark metadata as clean */
+ public static final long H5E_CANTCLEAN = H5E_CANTCLEAN();
+ /** Minor error codes - Dataspace errors - Can't clip hyperslab region */
public static final long H5E_CANTCLIP = H5E_CANTCLIP();
+ /** Minor error codes - File accessibility errors - Unable to close file */
public static final long H5E_CANTCLOSEFILE = H5E_CANTCLOSEFILE();
+ /** Minor error codes - Group related errors - Can't close object */
+ public static final long H5E_CANTCLOSEOBJ = H5E_CANTCLOSEOBJ();
+ /** Minor error codes - Dataspace errors - Can't compare objects */
+ public static final long H5E_CANTCOMPARE = H5E_CANTCOMPARE();
+ /** Minor error codes - Heap errors - Can't compute value */
+ public static final long H5E_CANTCOMPUTE = H5E_CANTCOMPUTE();
+ /** Datatype conversion errors - Can't convert datatypes */
public static final long H5E_CANTCONVERT = H5E_CANTCONVERT();
+ /** Minor error codes - Resource errors - Unable to copy object */
public static final long H5E_CANTCOPY = H5E_CANTCOPY();
+ /** Minor error codes - Cache related errors - Unable to cork an object */
+ public static final long H5E_CANTCORK = H5E_CANTCORK();
+ /** Minor error codes - Dataspace errors - Can't count elements */
public static final long H5E_CANTCOUNT = H5E_CANTCOUNT();
+ /** Minor error codes - File accessibility errors - Unable to create file */
public static final long H5E_CANTCREATE = H5E_CANTCREATE();
+ /** Minor error codes - Object ID related errors - Unable to decrement reference count */
public static final long H5E_CANTDEC = H5E_CANTDEC();
+ /** Minor error codes - B-tree related errors - Unable to decode value */
public static final long H5E_CANTDECODE = H5E_CANTDECODE();
+ /** Minor error codes - Object header related errors - Can't delete message */
public static final long H5E_CANTDELETE = H5E_CANTDELETE();
+ /** Minor error codes - File accessibility errors - Unable to delete file */
public static final long H5E_CANTDELETEFILE = H5E_CANTDELETEFILE();
+ /** Minor error codes - Cache related errors - Unable to create a flush dependency */
+ public static final long H5E_CANTDEPEND = H5E_CANTDEPEND();
+ /** Minor error codes - Cache related errors - Unable to mark metadata as dirty */
+ public static final long H5E_CANTDIRTY = H5E_CANTDIRTY();
+ /** Minor error codes - B-tree related errors - Unable to encode value */
public static final long H5E_CANTENCODE = H5E_CANTENCODE();
+ /** Minor error codes - Cache related errors - Unable to expunge a metadata cache entry */
+ public static final long H5E_CANTEXPUNGE = H5E_CANTEXPUNGE();
+ /** Minor error codes - Heap errors - Can't extend heap's space */
+ public static final long H5E_CANTEXTEND = H5E_CANTEXTEND();
+ /** I/O pipeline errors - Filter operation failed */
+ public static final long H5E_CANTFILTER = H5E_CANTFILTER();
+ /** Minor error codes - Cache related errors - Unable to flush data from cache */
public static final long H5E_CANTFLUSH = H5E_CANTFLUSH();
+ /** Minor error codes - Resource errors - Unable to free object */
public static final long H5E_CANTFREE = H5E_CANTFREE();
+ /** Minor error codes - Parallel MPI - Can't gather data */
+ public static final long H5E_CANTGATHER = H5E_CANTGATHER();
+ /** Minor error codes - Resource errors - Unable to garbage collect */
+ public static final long H5E_CANTGC = H5E_CANTGC();
+ /** Minor error codes - Property list errors - Can't get value */
public static final long H5E_CANTGET = H5E_CANTGET();
+ /** Minor error codes - Resource errors - Unable to compute size */
+ public static final long H5E_CANTGETSIZE = H5E_CANTGETSIZE();
+ /** Minor error codes - Object ID related errors - Unable to increment reference count */
public static final long H5E_CANTINC = H5E_CANTINC();
+ /** Minor error codes - Function entry/exit interface - Unable to initialize object */
public static final long H5E_CANTINIT = H5E_CANTINIT();
+ /** Minor error codes - Cache related errors - Unable to insert metadata into cache */
+ public static final long H5E_CANTINS = H5E_CANTINS();
+ /** Minor error codes - B-tree related errors - Unable to insert object */
public static final long H5E_CANTINSERT = H5E_CANTINSERT();
+ /** Minor error codes - B-tree related errors - Unable to list node */
public static final long H5E_CANTLIST = H5E_CANTLIST();
+ /** Minor error codes - Cache related errors - Unable to load metadata into cache */
public static final long H5E_CANTLOAD = H5E_CANTLOAD();
+ /** Minor error codes - Resource errors - Unable to lock object */
public static final long H5E_CANTLOCK = H5E_CANTLOCK();
+ /** Minor error codes - File accessibility errors Unable to lock file */
+ public static final long H5E_CANTLOCKFILE = H5E_CANTLOCKFILE();
+ /** Minor error codes - Cache related errors - Unable to mark a pinned entry as clean */
+ public static final long H5E_CANTMARKCLEAN = H5E_CANTMARKCLEAN();
+ /** Minor error codes - Cache related errors - Unable to mark a pinned entry as dirty */
+ public static final long H5E_CANTMARKDIRTY = H5E_CANTMARKDIRTY();
+ /** Minor error codes - Cache related errors - Unable to mark an entry as unserialized */
+ public static final long H5E_CANTMARKSERIALIZED = H5E_CANTMARKSERIALIZED();
+ /** Minor error codes - Cache related errors - Unable to mark an entry as serialized */
+ public static final long H5E_CANTMARKUNSERIALIZED = H5E_CANTMARKUNSERIALIZED();
+ /** Minor error codes - Free space errors - Can't merge objects */
+ public static final long H5E_CANTMERGE = H5E_CANTMERGE();
+ /** Minor error codes - B-tree related errors - Unable to modify record */
+ public static final long H5E_CANTMODIFY = H5E_CANTMODIFY();
+ /** Minor error codes - Link related errors - Can't move object */
+ public static final long H5E_CANTMOVE = H5E_CANTMOVE();
+ /** Minor error codes - Dataspace errors - Can't move to next iterator location */
public static final long H5E_CANTNEXT = H5E_CANTNEXT();
+ /** Minor error codes - Cache related errors - Unable to notify object about action */
+ public static final long H5E_CANTNOTIFY = H5E_CANTNOTIFY();
+ /** Minor error codes - File accessibility errors - Unable to open file */
public static final long H5E_CANTOPENFILE = H5E_CANTOPENFILE();
+ /** Minor error codes - Group related errors - Can't open object */
public static final long H5E_CANTOPENOBJ = H5E_CANTOPENOBJ();
- // public static final long H5E_CANTRECV = H5E_CANTRECV();
+ /** Minor error codes - Heap errors - Can't operate on object */
+ public static final long H5E_CANTOPERATE = H5E_CANTOPERATE();
+ /** Minor error codes - Object header related errors - Can't pack messages */
+ public static final long H5E_CANTPACK = H5E_CANTPACK();
+ /** Minor error codes - Cache related errors - Unable to pin cache entry */
+ public static final long H5E_CANTPIN = H5E_CANTPIN();
+ /** Minor error codes - Cache related errors - Unable to protect metadata */
+ public static final long H5E_CANTPROTECT = H5E_CANTPROTECT();
+ /** Minor error codes - Parallel MPI - Can't receive data */
+ public static final long H5E_CANTRECV = H5E_CANTRECV();
+ /** Minor error codes - B-tree related errors - Unable to redistribute records */
+ public static final long H5E_CANTREDISTRIBUTE = H5E_CANTREDISTRIBUTE();
+ /** Minor error codes - Object ID related errors - Unable to register new ID */
public static final long H5E_CANTREGISTER = H5E_CANTREGISTER();
+ /** Minor error codes - Function entry/exit interface - Unable to release object */
public static final long H5E_CANTRELEASE = H5E_CANTRELEASE();
+ /** Minor error codes - B-tree related errors - Unable to remove object */
+ public static final long H5E_CANTREMOVE = H5E_CANTREMOVE();
+ /** Minor error codes - Object header related errors - Unable to rename object */
+ public static final long H5E_CANTRENAME = H5E_CANTRENAME();
+ /** Minor error codes - Object header related errors - Can't reset object */
+ public static final long H5E_CANTRESET = H5E_CANTRESET();
+ /** Minor error codes - Cache related errors - Unable to resize a metadata cache entry */
+ public static final long H5E_CANTRESIZE = H5E_CANTRESIZE();
+ /** Minor error codes - Heap errors - Can't restore condition */
+ public static final long H5E_CANTRESTORE = H5E_CANTRESTORE();
+ /** Minor error codes - Free space errors - Can't revive object */
+ public static final long H5E_CANTREVIVE = H5E_CANTREVIVE();
+ /** Minor error codes - Free space errors - Can't shrink container */
+ public static final long H5E_CANTSHRINK = H5E_CANTSHRINK();
+ /** Minor error codes - Dataspace errors - Can't select hyperslab */
public static final long H5E_CANTSELECT = H5E_CANTSELECT();
+ /** Minor error codes - Cache related errors - Unable to serialize data from cache */
+ public static final long H5E_CANTSERIALIZE = H5E_CANTSERIALIZE();
+ /** Minor error codes - Property list errors - Can't set value */
public static final long H5E_CANTSET = H5E_CANTSET();
+ /** Minor error codes - Link related errors - Can't sort objects */
+ public static final long H5E_CANTSORT = H5E_CANTSORT();
+ /** Minor error codes - B-tree related errors - Unable to split node */
public static final long H5E_CANTSPLIT = H5E_CANTSPLIT();
+ /** Minor error codes - B-tree related errors - Unable to swap records */
+ public static final long H5E_CANTSWAP = H5E_CANTSWAP();
+ /** Minor error codes - Cache related errors - Unable to tag metadata in the cache */
+ public static final long H5E_CANTTAG = H5E_CANTTAG();
+ /** Minor error codes - Cache related errors - Unable to uncork an object */
+ public static final long H5E_CANTUNCORK = H5E_CANTUNCORK();
+ /** Minor error codes - Cache related errors - Unable to destroy a flush dependency */
+ public static final long H5E_CANTUNDEPEND = H5E_CANTUNDEPEND();
+ /** Minor error codes - Resource errors - Unable to unlock object */
public static final long H5E_CANTUNLOCK = H5E_CANTUNLOCK();
+ /** Minor error codes - File accessibility errors Unable to unlock file */
+ public static final long H5E_CANTUNLOCKFILE = H5E_CANTUNLOCKFILE();
+ /** Minor error codes - Cache related errors - Unable to un-pin cache entry */
+ public static final long H5E_CANTUNPIN = H5E_CANTUNPIN();
+ /** Minor error codes - Cache related errors - Unable to unprotect metadata */
+ public static final long H5E_CANTUNPROTECT = H5E_CANTUNPROTECT();
+ /** Minor error codes - Cache related errors - Unable to mark metadata as unserialized */
+ public static final long H5E_CANTUNSERIALIZE = H5E_CANTUNSERIALIZE();
+ /** Minor error codes - Heap errors - Can't update object */
+ public static final long H5E_CANTUPDATE = H5E_CANTUPDATE();
+ /** Generic low-level file I/O errors - Close failed */
public static final long H5E_CLOSEERROR = H5E_CLOSEERROR();
+ /** Minor error codes - Group related errors - Name component is too long */
public static final long H5E_COMPLEN = H5E_COMPLEN();
+ /** Major error codes - API Context */
+ public static final long H5E_CONTEXT = H5E_CONTEXT();
+ /** Major error codes - Dataset */
public static final long H5E_DATASET = H5E_DATASET();
+ /** Major error codes - Dataspace */
public static final long H5E_DATASPACE = H5E_DATASPACE();
+ /** Major error codes - Datatype */
public static final long H5E_DATATYPE = H5E_DATATYPE();
+ /** Value for the default error stack */
public static final long H5E_DEFAULT = H5E_DEFAULT();
+ /** Minor error codes - Property list errors - Duplicate class name in parent class */
public static final long H5E_DUPCLASS = H5E_DUPCLASS();
+ /** Major error codes - Extensible Array */
+ public static final long H5E_EARRAY = H5E_EARRAY();
+ /** Major error codes - External file list */
public static final long H5E_EFL = H5E_EFL();
+ /** Major error codes - Error API */
+ public static final long H5E_ERROR = H5E_ERROR();
+ /** Minor error codes - B-tree related errors - Object already exists */
public static final long H5E_EXISTS = H5E_EXISTS();
+ /** Major error codes - Fixed Array */
+ public static final long H5E_FARRAY = H5E_FARRAY();
+ /** Generic low-level file I/O errors - File control (fcntl) failed */
public static final long H5E_FCNTL = H5E_FCNTL();
+ /** Major error codes - File accessibility */
public static final long H5E_FILE = H5E_FILE();
+ /** Minor error codes - File accessibility errors - File already exists */
public static final long H5E_FILEEXISTS = H5E_FILEEXISTS();
+ /** Minor error codes - File accessibility errors - File already open */
public static final long H5E_FILEOPEN = H5E_FILEOPEN();
+ /** Major error codes - Free Space Manager */
+ public static final long H5E_FSPACE = H5E_FSPACE();
+ /** Major error codes - Function entry/exit */
public static final long H5E_FUNC = H5E_FUNC();
+ /** Major error codes - Heap */
public static final long H5E_HEAP = H5E_HEAP();
+ /** Minor error codes - Dataspace errors - Internal states are inconsistent */
+ public static final long H5E_INCONSISTENTSTATE = H5E_INCONSISTENTSTATE();
+ /** Major error codes - Internal error (too specific to document in detail) */
public static final long H5E_INTERNAL = H5E_INTERNAL();
+ /** Major error codes - Low-level I/O */
public static final long H5E_IO = H5E_IO();
+ /** Major error codes - Links */
public static final long H5E_LINK = H5E_LINK();
+ /** Minor error codes - Object header related errors - Bad object header link count */
public static final long H5E_LINKCOUNT = H5E_LINKCOUNT();
+ /** Minor error codes - Cache related errors - Failure in the cache logging framework */
+ public static final long H5E_LOGGING = H5E_LOGGING();
+ /** Major error codes - Map */
+ public static final long H5E_MAP = H5E_MAP();
+ /** Minor error codes - File accessibility errors - File mount error */
public static final long H5E_MOUNT = H5E_MOUNT();
+ /** Minor error codes - Parallel MPI - Some MPI function failed */
public static final long H5E_MPI = H5E_MPI();
+ /** Minor error codes - Parallel MPI - MPI Error String */
public static final long H5E_MPIERRSTR = H5E_MPIERRSTR();
+ /** Minor error codes - Link related errors - Too many soft links in path */
+ public static final long H5E_NLINKS = H5E_NLINKS();
+ /** Minor error codes - Parallel MPI - Can't perform independent IO */
+ public static final long H5E_NO_INDEPENDENT = H5E_NO_INDEPENDENT();
+ /** I/O pipeline errors - Filter present but encoding disabled */
+ public static final long H5E_NOENCODER = H5E_NOENCODER();
+ /** I/O pipeline errors - Requested filter is not available */
public static final long H5E_NOFILTER = H5E_NOFILTER();
+ /** Minor error codes - Object ID related errors - Out of IDs for group */
public static final long H5E_NOIDS = H5E_NOIDS();
+ /** Major error codes - No error */
public static final long H5E_NONE_MAJOR = H5E_NONE_MAJOR();
+ /** No error */
public static final long H5E_NONE_MINOR = H5E_NONE_MINOR();
+ /** Minor error codes - Resource errors - No space available for allocation */
public static final long H5E_NOSPACE = H5E_NOSPACE();
+ /** Minor error codes - Cache related errors - Metadata not currently cached */
public static final long H5E_NOTCACHED = H5E_NOTCACHED();
+ /** Minor error codes - B-tree related errors - Object not found */
public static final long H5E_NOTFOUND = H5E_NOTFOUND();
+ /** Minor error codes - File accessibility errors - Not an HDF5 file */
public static final long H5E_NOTHDF5 = H5E_NOTHDF5();
+ /** Minor error codes - Link related errors - Link class not registered */
+ public static final long H5E_NOTREGISTERED = H5E_NOTREGISTERED();
+ /** Minor error codes - Resource errors - Object is already open */
+ public static final long H5E_OBJOPEN = H5E_OBJOPEN();
+ /** Major error codes - Object header */
public static final long H5E_OHDR = H5E_OHDR();
+ /** Minor error codes - Plugin errors - Can't open directory or file */
+ public static final long H5E_OPENERROR = H5E_OPENERROR();
+ /** Generic low-level file I/O errors - Address overflowed */
public static final long H5E_OVERFLOW = H5E_OVERFLOW();
+ /** Major error codes - Page Buffering */
+ public static final long H5E_PAGEBUF = H5E_PAGEBUF();
+ /** Minor error codes - Group related errors - Problem with path to object */
+ public static final long H5E_PATH = H5E_PATH();
+ /** Major error codes - Data filters */
public static final long H5E_PLINE = H5E_PLINE();
+ /** Major error codes - Property lists */
public static final long H5E_PLIST = H5E_PLIST();
+ /** Major error codes - Plugin for dynamically loaded library */
+ public static final long H5E_PLUGIN = H5E_PLUGIN();
+ /** Minor error codes - Cache related errors - Protected metadata error */
public static final long H5E_PROTECT = H5E_PROTECT();
+ /** Generic low-level file I/O errors - Read failed */
public static final long H5E_READERROR = H5E_READERROR();
+ /** Major error codes - References */
public static final long H5E_REFERENCE = H5E_REFERENCE();
+ /** Major error codes - Resource unavailable */
public static final long H5E_RESOURCE = H5E_RESOURCE();
+ /** Major error codes - Reference Counted Strings */
public static final long H5E_RS = H5E_RS();
+ /** Generic low-level file I/O errors - Seek failed */
public static final long H5E_SEEKERROR = H5E_SEEKERROR();
+ /** Minor error codes - Property list errors - Disallowed operation */
+ public static final long H5E_SETDISALLOWED = H5E_SETDISALLOWED();
+ /** I/O pipeline errors - Error from filter 'set local' callback */
public static final long H5E_SETLOCAL = H5E_SETLOCAL();
+ /** Major error codes - Skip Lists */
+ public static final long H5E_SLIST = H5E_SLIST();
+ /** Major error codes - Shared Object Header Messages */
+ public static final long H5E_SOHM = H5E_SOHM();
+ /** Major error codes - Data storage */
public static final long H5E_STORAGE = H5E_STORAGE();
+ /** Major error codes - Symbol table */
public static final long H5E_SYM = H5E_SYM();
+ /** Minor error codes - System level errors - System error message */
+ public static final long H5E_SYSERRSTR = H5E_SYSERRSTR();
+ /** Minor error codes - Cache related errors - Internal error detected */
+ public static final long H5E_SYSTEM = H5E_SYSTEM();
+ /** Minor error codes - Link related errors - Link traversal failure */
+ public static final long H5E_TRAVERSE = H5E_TRAVERSE();
+ /** Minor error codes - File accessibility errors - File has been truncated */
public static final long H5E_TRUNCATED = H5E_TRUNCATED();
+ /** Major error codes - Ternary Search Trees */
public static final long H5E_TST = H5E_TST();
+ /** Minor error codes - Argument errors - Information is uinitialized */
public static final long H5E_UNINITIALIZED = H5E_UNINITIALIZED();
+ /** Minor error codes - Argument errors - Feature is unsupported */
public static final long H5E_UNSUPPORTED = H5E_UNSUPPORTED();
+ /** Minor error codes - Object header related errors - Wrong version number */
public static final long H5E_VERSION = H5E_VERSION();
+ /** Major error codes - Virtual File Layer */
public static final long H5E_VFL = H5E_VFL();
+ /** Major error codes - Virtual Object Layer */
public static final long H5E_VOL = H5E_VOL();
+ /** Error stack traversal direction - begin at API function, end deep */
public static final long H5E_WALK_DOWNWARD = H5E_WALK_DOWNWARD();
+ /** Error stack traversal direction - begin deep, end at API function */
public static final long H5E_WALK_UPWARD = H5E_WALK_UPWARD();
+ /** Generic low-level file I/O errors - Write failed */
public static final long H5E_WRITEERROR = H5E_WRITEERROR();
+ /** */
private static final int H5ES_STATUS_IN_PROGRESS = H5ES_STATUS_IN_PROGRESS();
+ /** */
private static final int H5ES_STATUS_SUCCEED = H5ES_STATUS_SUCCEED();
+ /** */
private static final int H5ES_STATUS_FAIL = H5ES_STATUS_FAIL();
- private static final int H5ES_STATUS_CANCELED = H5ES_STATUS_CANCELED();
+ /** */
public static final int H5F_ACC_CREAT = H5F_ACC_CREAT();
+ /** */
public static final int H5F_ACC_EXCL = H5F_ACC_EXCL();
+ /** */
public static final int H5F_ACC_RDONLY = H5F_ACC_RDONLY();
+ /** */
public static final int H5F_ACC_RDWR = H5F_ACC_RDWR();
+ /** */
public static final int H5F_ACC_TRUNC = H5F_ACC_TRUNC();
+ /** */
public static final int H5F_ACC_DEFAULT = H5F_ACC_DEFAULT();
+ /** */
public static final int H5F_ACC_SWMR_READ = H5F_ACC_SWMR_READ();
+ /** */
public static final int H5F_ACC_SWMR_WRITE = H5F_ACC_SWMR_WRITE();
+ /** */
public static final int H5F_CLOSE_DEFAULT = H5F_CLOSE_DEFAULT();
+ /** */
public static final int H5F_CLOSE_SEMI = H5F_CLOSE_SEMI();
+ /** */
public static final int H5F_CLOSE_STRONG = H5F_CLOSE_STRONG();
+ /** */
public static final int H5F_CLOSE_WEAK = H5F_CLOSE_WEAK();
+ /** */
public static final int H5F_LIBVER_ERROR = H5F_LIBVER_ERROR();
+ /** */
public static final int H5F_LIBVER_EARLIEST = H5F_LIBVER_EARLIEST();
+ /** */
public static final int H5F_LIBVER_V18 = H5F_LIBVER_V18();
+ /** */
public static final int H5F_LIBVER_V110 = H5F_LIBVER_V110();
+ /** */
public static final int H5F_LIBVER_V112 = H5F_LIBVER_V112();
+ /** */
public static final int H5F_LIBVER_V114 = H5F_LIBVER_V114();
+ /** */
public static final int H5F_LIBVER_NBOUNDS = H5F_LIBVER_NBOUNDS();
+ /** */
public static final int H5F_LIBVER_LATEST = H5F_LIBVER_LATEST();
+ /** */
public static final int H5F_OBJ_ALL = H5F_OBJ_ALL();
+ /** */
public static final int H5F_OBJ_ATTR = H5F_OBJ_ATTR();
+ /** */
public static final int H5F_OBJ_DATASET = H5F_OBJ_DATASET();
+ /** */
public static final int H5F_OBJ_DATATYPE = H5F_OBJ_DATATYPE();
+ /** */
public static final int H5F_OBJ_FILE = H5F_OBJ_FILE();
+ /** */
public static final int H5F_OBJ_GROUP = H5F_OBJ_GROUP();
+ /** */
public static final int H5F_OBJ_LOCAL = H5F_OBJ_LOCAL();
+ /** */
public static final int H5F_SCOPE_GLOBAL = H5F_SCOPE_GLOBAL();
+ /** */
public static final int H5F_SCOPE_LOCAL = H5F_SCOPE_LOCAL();
+ /** */
public static final int H5F_UNLIMITED = H5F_UNLIMITED();
+ /** */
public static final int H5F_FSPACE_STRATEGY_FSM_AGGR = H5F_FSPACE_STRATEGY_FSM_AGGR();
+ /** */
public static final int H5F_FSPACE_STRATEGY_AGGR = H5F_FSPACE_STRATEGY_AGGR();
+ /** */
public static final int H5F_FSPACE_STRATEGY_PAGE = H5F_FSPACE_STRATEGY_PAGE();
+ /** */
public static final int H5F_FSPACE_STRATEGY_NONE = H5F_FSPACE_STRATEGY_NONE();
+ /** */
public static final int H5F_FSPACE_STRATEGY_NTYPES = H5F_FSPACE_STRATEGY_NTYPES();
+ /** */
public static final long H5FD_CORE = H5FD_CORE();
+ /** */
public static final long H5FD_DIRECT = H5FD_DIRECT();
+ /** */
public static final long H5FD_FAMILY = H5FD_FAMILY();
+ /** */
public static final long H5FD_LOG = H5FD_LOG();
+ /** */
public static final long H5FD_MPIO = H5FD_MPIO();
+ /** */
public static final long H5FD_MULTI = H5FD_MULTI();
+ /** */
public static final long H5FD_SEC2 = H5FD_SEC2();
+ /** */
public static final long H5FD_STDIO = H5FD_STDIO();
+ /** */
public static final long H5FD_WINDOWS = H5FD_WINDOWS();
+ /** */
public static final long H5FD_ROS3 = H5FD_ROS3();
+ /** */
public static final long H5FD_HDFS = H5FD_HDFS();
+ /** */
public static final int H5FD_LOG_LOC_READ = H5FD_LOG_LOC_READ();
+ /** */
public static final int H5FD_LOG_LOC_WRITE = H5FD_LOG_LOC_WRITE();
+ /** */
public static final int H5FD_LOG_LOC_SEEK = H5FD_LOG_LOC_SEEK();
+ /** */
public static final int H5FD_LOG_LOC_IO = H5FD_LOG_LOC_IO();
+ /** */
public static final int H5FD_LOG_FILE_READ = H5FD_LOG_FILE_READ();
+ /** */
public static final int H5FD_LOG_FILE_WRITE = H5FD_LOG_FILE_WRITE();
+ /** */
public static final int H5FD_LOG_FILE_IO = H5FD_LOG_FILE_IO();
+ /** */
public static final int H5FD_LOG_FLAVOR = H5FD_LOG_FLAVOR();
+ /** */
public static final int H5FD_LOG_NUM_READ = H5FD_LOG_NUM_READ();
+ /** */
public static final int H5FD_LOG_NUM_WRITE = H5FD_LOG_NUM_WRITE();
+ /** */
public static final int H5FD_LOG_NUM_SEEK = H5FD_LOG_NUM_SEEK();
+ /** */
public static final int H5FD_LOG_NUM_TRUNCATE = H5FD_LOG_NUM_TRUNCATE();
+ /** */
public static final int H5FD_LOG_NUM_IO = H5FD_LOG_NUM_IO();
+ /** */
public static final int H5FD_LOG_TIME_OPEN = H5FD_LOG_TIME_OPEN();
+ /** */
public static final int H5FD_LOG_TIME_STAT = H5FD_LOG_TIME_STAT();
+ /** */
public static final int H5FD_LOG_TIME_READ = H5FD_LOG_TIME_READ();
+ /** */
public static final int H5FD_LOG_TIME_WRITE = H5FD_LOG_TIME_WRITE();
+ /** */
public static final int H5FD_LOG_TIME_SEEK = H5FD_LOG_TIME_SEEK();
+ /** */
public static final int H5FD_LOG_TIME_CLOSE = H5FD_LOG_TIME_CLOSE();
+ /** */
public static final int H5FD_LOG_TIME_IO = H5FD_LOG_TIME_IO();
+ /** */
public static final int H5FD_LOG_ALLOC = H5FD_LOG_ALLOC();
+ /** */
public static final int H5FD_LOG_ALL = H5FD_LOG_ALL();
+ /** */
public static final int H5FD_MEM_NOLIST = H5FD_MEM_NOLIST();
+ /** */
public static final int H5FD_MEM_DEFAULT = H5FD_MEM_DEFAULT();
+ /** */
public static final int H5FD_MEM_SUPER = H5FD_MEM_SUPER();
+ /** */
public static final int H5FD_MEM_BTREE = H5FD_MEM_BTREE();
+ /** */
public static final int H5FD_MEM_DRAW = H5FD_MEM_DRAW();
+ /** */
public static final int H5FD_MEM_GHEAP = H5FD_MEM_GHEAP();
+ /** */
public static final int H5FD_MEM_LHEAP = H5FD_MEM_LHEAP();
+ /** */
public static final int H5FD_MEM_OHDR = H5FD_MEM_OHDR();
+ /** */
public static final int H5FD_MEM_NTYPES = H5FD_MEM_NTYPES();
+ /** */
public static final long H5FD_DEFAULT_HADDR_SIZE = H5FD_DEFAULT_HADDR_SIZE();
+ /** */
public static final long H5FD_MEM_DEFAULT_SIZE = H5FD_MEM_DEFAULT_SIZE();
+ /** */
public static final long H5FD_MEM_DEFAULT_SUPER_SIZE = H5FD_MEM_DEFAULT_SUPER_SIZE();
+ /** */
public static final long H5FD_MEM_DEFAULT_BTREE_SIZE = H5FD_MEM_DEFAULT_BTREE_SIZE();
+ /** */
public static final long H5FD_MEM_DEFAULT_DRAW_SIZE = H5FD_MEM_DEFAULT_DRAW_SIZE();
+ /** */
public static final long H5FD_MEM_DEFAULT_GHEAP_SIZE = H5FD_MEM_DEFAULT_GHEAP_SIZE();
+ /** */
public static final long H5FD_MEM_DEFAULT_LHEAP_SIZE = H5FD_MEM_DEFAULT_LHEAP_SIZE();
+ /** */
public static final long H5FD_MEM_DEFAULT_OHDR_SIZE = H5FD_MEM_DEFAULT_OHDR_SIZE();
// public static final int H5G_DATASET = H5G_DATASET();
@@ -308,405 +698,802 @@ public class HDF5Constants {
// public static final int H5G_TYPE = H5G_TYPE();
// public static final int H5G_UNKNOWN = H5G_UNKNOWN();
+ /** */
public static final int H5G_STORAGE_TYPE_UNKNOWN = H5G_STORAGE_TYPE_UNKNOWN();
+ /** */
public static final int H5G_STORAGE_TYPE_SYMBOL_TABLE = H5G_STORAGE_TYPE_SYMBOL_TABLE();
+ /** */
public static final int H5G_STORAGE_TYPE_COMPACT = H5G_STORAGE_TYPE_COMPACT();
+ /** */
public static final int H5G_STORAGE_TYPE_DENSE = H5G_STORAGE_TYPE_DENSE();
+ /** */
public static final int H5I_ATTR = H5I_ATTR();
+ /** */
public static final int H5I_BADID = H5I_BADID();
+ /** */
public static final int H5I_DATASET = H5I_DATASET();
+ /** */
public static final int H5I_DATASPACE = H5I_DATASPACE();
+ /** */
public static final int H5I_DATATYPE = H5I_DATATYPE();
+ /** */
public static final int H5I_ERROR_CLASS = H5I_ERROR_CLASS();
+ /** */
public static final int H5I_ERROR_MSG = H5I_ERROR_MSG();
+ /** */
public static final int H5I_ERROR_STACK = H5I_ERROR_STACK();
+ /** */
public static final int H5I_FILE = H5I_FILE();
+ /** */
public static final int H5I_GENPROP_CLS = H5I_GENPROP_CLS();
+ /** */
public static final int H5I_GENPROP_LST = H5I_GENPROP_LST();
+ /** */
public static final int H5I_GROUP = H5I_GROUP();
+ /** */
public static final int H5I_INVALID_HID = H5I_INVALID_HID();
+ /** */
public static final int H5I_NTYPES = H5I_NTYPES();
+ /** */
public static final int H5I_UNINIT = H5I_UNINIT();
+ /** */
public static final int H5I_VFL = H5I_VFL();
+ /** */
public static final int H5I_VOL = H5I_VOL();
+ /** */
public static final int H5L_TYPE_ERROR = H5L_TYPE_ERROR();
+ /** */
public static final int H5L_TYPE_HARD = H5L_TYPE_HARD();
+ /** */
public static final int H5L_TYPE_SOFT = H5L_TYPE_SOFT();
+ /** */
public static final int H5L_TYPE_EXTERNAL = H5L_TYPE_EXTERNAL();
+ /** */
public static final int H5L_TYPE_MAX = H5L_TYPE_MAX();
+ /** */
public static final int H5O_COPY_SHALLOW_HIERARCHY_FLAG = H5O_COPY_SHALLOW_HIERARCHY_FLAG();
+ /** */
public static final int H5O_COPY_EXPAND_SOFT_LINK_FLAG = H5O_COPY_EXPAND_SOFT_LINK_FLAG();
+ /** */
public static final int H5O_COPY_EXPAND_EXT_LINK_FLAG = H5O_COPY_EXPAND_EXT_LINK_FLAG();
+ /** */
public static final int H5O_COPY_EXPAND_REFERENCE_FLAG = H5O_COPY_EXPAND_REFERENCE_FLAG();
+ /** */
public static final int H5O_COPY_WITHOUT_ATTR_FLAG = H5O_COPY_WITHOUT_ATTR_FLAG();
+ /** */
public static final int H5O_COPY_PRESERVE_NULL_FLAG = H5O_COPY_PRESERVE_NULL_FLAG();
+ /** */
public static final int H5O_INFO_BASIC = H5O_INFO_BASIC();
+ /** */
public static final int H5O_INFO_TIME = H5O_INFO_TIME();
+ /** */
public static final int H5O_INFO_NUM_ATTRS = H5O_INFO_NUM_ATTRS();
+ /** */
public static final int H5O_INFO_ALL = H5O_INFO_ALL();
+ /** */
public static final int H5O_NATIVE_INFO_HDR = H5O_NATIVE_INFO_HDR();
+ /** */
public static final int H5O_NATIVE_INFO_META_SIZE = H5O_NATIVE_INFO_META_SIZE();
+ /** */
public static final int H5O_NATIVE_INFO_ALL = H5O_NATIVE_INFO_ALL();
+ /** */
public static final int H5O_SHMESG_NONE_FLAG = H5O_SHMESG_NONE_FLAG();
+ /** */
public static final int H5O_SHMESG_SDSPACE_FLAG = H5O_SHMESG_SDSPACE_FLAG();
+ /** */
public static final int H5O_SHMESG_DTYPE_FLAG = H5O_SHMESG_DTYPE_FLAG();
+ /** */
public static final int H5O_SHMESG_FILL_FLAG = H5O_SHMESG_FILL_FLAG();
+ /** */
public static final int H5O_SHMESG_PLINE_FLAG = H5O_SHMESG_PLINE_FLAG();
+ /** */
public static final int H5O_SHMESG_ATTR_FLAG = H5O_SHMESG_ATTR_FLAG();
+ /** */
public static final int H5O_SHMESG_ALL_FLAG = H5O_SHMESG_ALL_FLAG();
+ /** */
public static final int H5O_TYPE_UNKNOWN = H5O_TYPE_UNKNOWN();
+ /** */
public static final int H5O_TYPE_GROUP = H5O_TYPE_GROUP();
+ /** */
public static final int H5O_TYPE_DATASET = H5O_TYPE_DATASET();
+ /** */
public static final int H5O_TYPE_NAMED_DATATYPE = H5O_TYPE_NAMED_DATATYPE();
+ /** */
public static final int H5O_TYPE_NTYPES = H5O_TYPE_NTYPES();
+ /** */
public static final int H5O_MAX_TOKEN_SIZE = H5O_MAX_TOKEN_SIZE();
+ /** */
public static final H5O_token_t H5O_TOKEN_UNDEF = H5O_TOKEN_UNDEF();
+ /** */
public static final long H5P_ROOT = H5P_ROOT();
+ /** */
public static final long H5P_OBJECT_CREATE = H5P_OBJECT_CREATE();
+ /** */
public static final long H5P_FILE_CREATE = H5P_FILE_CREATE();
+ /** */
public static final long H5P_FILE_ACCESS = H5P_FILE_ACCESS();
+ /** */
public static final long H5P_DATASET_CREATE = H5P_DATASET_CREATE();
+ /** */
public static final long H5P_DATASET_ACCESS = H5P_DATASET_ACCESS();
+ /** */
public static final long H5P_DATASET_XFER = H5P_DATASET_XFER();
+ /** */
public static final long H5P_FILE_MOUNT = H5P_FILE_MOUNT();
+ /** */
public static final long H5P_GROUP_CREATE = H5P_GROUP_CREATE();
+ /** */
public static final long H5P_GROUP_ACCESS = H5P_GROUP_ACCESS();
+ /** */
public static final long H5P_DATATYPE_CREATE = H5P_DATATYPE_CREATE();
+ /** */
public static final long H5P_DATATYPE_ACCESS = H5P_DATATYPE_ACCESS();
+ /** */
public static final long H5P_STRING_CREATE = H5P_STRING_CREATE();
+ /** */
public static final long H5P_ATTRIBUTE_CREATE = H5P_ATTRIBUTE_CREATE();
+ /** */
public static final long H5P_ATTRIBUTE_ACCESS = H5P_ATTRIBUTE_ACCESS();
+ /** */
public static final long H5P_OBJECT_COPY = H5P_OBJECT_COPY();
+ /** */
public static final long H5P_LINK_CREATE = H5P_LINK_CREATE();
+ /** */
public static final long H5P_LINK_ACCESS = H5P_LINK_ACCESS();
+ /** */
public static final long H5P_VOL_INITIALIZE = H5P_VOL_INITIALIZE();
+ /** */
public static final long H5P_FILE_CREATE_DEFAULT = H5P_FILE_CREATE_DEFAULT();
+ /** */
public static final long H5P_FILE_ACCESS_DEFAULT = H5P_FILE_ACCESS_DEFAULT();
+ /** */
public static final long H5P_DATASET_CREATE_DEFAULT = H5P_DATASET_CREATE_DEFAULT();
+ /** */
public static final long H5P_DATASET_ACCESS_DEFAULT = H5P_DATASET_ACCESS_DEFAULT();
+ /** */
public static final long H5P_DATASET_XFER_DEFAULT = H5P_DATASET_XFER_DEFAULT();
+ /** */
public static final long H5P_FILE_MOUNT_DEFAULT = H5P_FILE_MOUNT_DEFAULT();
+ /** */
public static final long H5P_GROUP_CREATE_DEFAULT = H5P_GROUP_CREATE_DEFAULT();
+ /** */
public static final long H5P_GROUP_ACCESS_DEFAULT = H5P_GROUP_ACCESS_DEFAULT();
+ /** */
public static final long H5P_DATATYPE_CREATE_DEFAULT = H5P_DATATYPE_CREATE_DEFAULT();
+ /** */
public static final long H5P_DATATYPE_ACCESS_DEFAULT = H5P_DATATYPE_ACCESS_DEFAULT();
+ /** */
public static final long H5P_ATTRIBUTE_CREATE_DEFAULT = H5P_ATTRIBUTE_CREATE_DEFAULT();
+ /** */
public static final long H5P_ATTRIBUTE_ACCESS_DEFAULT = H5P_ATTRIBUTE_ACCESS_DEFAULT();
+ /** */
public static final long H5P_OBJECT_COPY_DEFAULT = H5P_OBJECT_COPY_DEFAULT();
+ /** */
public static final long H5P_LINK_CREATE_DEFAULT = H5P_LINK_CREATE_DEFAULT();
+ /** */
public static final long H5P_LINK_ACCESS_DEFAULT = H5P_LINK_ACCESS_DEFAULT();
+ /** */
public static final long H5P_VOL_INITIALIZE_DEFAULT = H5P_VOL_INITIALIZE_DEFAULT();
+ /** */
public static final int H5P_CRT_ORDER_TRACKED = H5P_CRT_ORDER_TRACKED();
+ /** */
public static final int H5P_CRT_ORDER_INDEXED = H5P_CRT_ORDER_INDEXED();
+ /** */
public static final long H5P_DEFAULT = H5P_DEFAULT();
+ /** */
public static final int H5PL_TYPE_ERROR = H5PL_TYPE_ERROR();
+ /** */
public static final int H5PL_TYPE_FILTER = H5PL_TYPE_FILTER();
+ /** */
public static final int H5PL_TYPE_VOL = H5PL_TYPE_VOL();
+ /** */
public static final int H5PL_TYPE_NONE = H5PL_TYPE_NONE();
+ /** */
public static final int H5PL_FILTER_PLUGIN = H5PL_FILTER_PLUGIN();
+ /** */
public static final int H5PL_VOL_PLUGIN = H5PL_VOL_PLUGIN();
+ /** */
public static final int H5PL_ALL_PLUGIN = H5PL_ALL_PLUGIN();
+ /** */
public static final int H5R_ATTR = H5R_ATTR();
+ /** */
public static final int H5R_BADTYPE = H5R_BADTYPE();
+ /** */
public static final int H5R_DATASET_REGION = H5R_DATASET_REGION();
+ /** */
public static final int H5R_DATASET_REGION1 = H5R_DATASET_REGION1();
+ /** */
public static final int H5R_DATASET_REGION2 = H5R_DATASET_REGION2();
+ /** */
public static final int H5R_MAXTYPE = H5R_MAXTYPE();
+ /** */
public static final int H5R_REF_BUF_SIZE = H5R_REF_BUF_SIZE();
+ /** */
public static final int H5R_OBJ_REF_BUF_SIZE = H5R_OBJ_REF_BUF_SIZE();
+ /** */
public static final int H5R_OBJECT = H5R_OBJECT();
+ /** */
public static final int H5R_OBJECT1 = H5R_OBJECT1();
+ /** */
public static final int H5R_OBJECT2 = H5R_OBJECT2();
+ /** Define atomic datatypes */
public static final int H5S_ALL = H5S_ALL();
+ /** Define user-level maximum number of dimensions */
public static final int H5S_MAX_RANK = H5S_MAX_RANK();
+ /** Different types of dataspaces - error */
public static final int H5S_NO_CLASS = H5S_NO_CLASS();
+ /** Different types of dataspaces - null dataspace */
public static final int H5S_NULL = H5S_NULL();
+ /** Different types of dataspaces - scalar variable */
public static final int H5S_SCALAR = H5S_SCALAR();
+ /** Enumerated type for the type of selection - Entire extent selected */
public static final int H5S_SEL_ALL = H5S_SEL_ALL();
+ /** Enumerated type for the type of selection - Error */
public static final int H5S_SEL_ERROR = H5S_SEL_ERROR();
+ /** Enumerated type for the type of selection - Hyperslab selected */
public static final int H5S_SEL_HYPERSLABS = H5S_SEL_HYPERSLABS();
+ /** Enumerated type for the type of selection - LAST */
public static final int H5S_SEL_N = H5S_SEL_N();
+ /** Enumerated type for the type of selection - Nothing selected */
public static final int H5S_SEL_NONE = H5S_SEL_NONE();
+ /** Enumerated type for the type of selection - Points / elements selected */
public static final int H5S_SEL_POINTS = H5S_SEL_POINTS();
+ /** Different ways of combining selections - Binary "and" operation for hyperslabs */
public static final int H5S_SELECT_AND = H5S_SELECT_AND();
+ /** Different ways of combining selections - Append elements to end of point selection */
public static final int H5S_SELECT_APPEND = H5S_SELECT_APPEND();
+ /** Different ways of combining selections - Invalid upper bound on selection operations */
public static final int H5S_SELECT_INVALID = H5S_SELECT_INVALID();
+ /** Different ways of combining selections - error */
public static final int H5S_SELECT_NOOP = H5S_SELECT_NOOP();
+ /** Different ways of combining selections - Binary "not" operation for hyperslabs */
public static final int H5S_SELECT_NOTA = H5S_SELECT_NOTA();
+ /** Different ways of combining selections - Binary "not" operation for hyperslabs */
public static final int H5S_SELECT_NOTB = H5S_SELECT_NOTB();
+ /** Different ways of combining selections - Binary "or" operation for hyperslabs */
public static final int H5S_SELECT_OR = H5S_SELECT_OR();
+ /** Different ways of combining selections - Prepend elements to beginning of point selection */
public static final int H5S_SELECT_PREPEND = H5S_SELECT_PREPEND();
+ /** Different ways of combining selections - Select "set" operation */
public static final int H5S_SELECT_SET = H5S_SELECT_SET();
+ /** Different ways of combining selections - Binary "xor" operation for hyperslabs */
public static final int H5S_SELECT_XOR = H5S_SELECT_XOR();
+ /** Different types of dataspaces - simple dataspace */
public static final int H5S_SIMPLE = H5S_SIMPLE();
+ /** Define atomic datatypes */
public static final int H5S_UNLIMITED = H5S_UNLIMITED();
+
+ /** */
public static final long H5T_ALPHA_B16 = H5T_ALPHA_B16();
+ /** */
public static final long H5T_ALPHA_B32 = H5T_ALPHA_B32();
+ /** */
public static final long H5T_ALPHA_B64 = H5T_ALPHA_B64();
+ /** */
public static final long H5T_ALPHA_B8 = H5T_ALPHA_B8();
+ /** */
public static final long H5T_ALPHA_F32 = H5T_ALPHA_F32();
+ /** */
public static final long H5T_ALPHA_F64 = H5T_ALPHA_F64();
+ /** */
public static final long H5T_ALPHA_I16 = H5T_ALPHA_I16();
+ /** */
public static final long H5T_ALPHA_I32 = H5T_ALPHA_I32();
+ /** */
public static final long H5T_ALPHA_I64 = H5T_ALPHA_I64();
+ /** */
public static final long H5T_ALPHA_I8 = H5T_ALPHA_I8();
+ /** */
public static final long H5T_ALPHA_U16 = H5T_ALPHA_U16();
+ /** */
public static final long H5T_ALPHA_U32 = H5T_ALPHA_U32();
+ /** */
public static final long H5T_ALPHA_U64 = H5T_ALPHA_U64();
+ /** */
public static final long H5T_ALPHA_U8 = H5T_ALPHA_U8();
+ /** */
public static final int H5T_ARRAY = H5T_ARRAY();
+ /** */
public static final int H5T_BITFIELD = H5T_BITFIELD();
+ /** */
public static final int H5T_BKG_NO = H5T_BKG_NO();
+ /** */
public static final int H5T_BKG_YES = H5T_BKG_YES();
+ /** */
public static final long H5T_C_S1 = H5T_C_S1();
+ /** */
public static final int H5T_COMPOUND = H5T_COMPOUND();
+ /** */
public static final int H5T_CONV_CONV = H5T_CONV_CONV();
+ /** */
public static final int H5T_CONV_FREE = H5T_CONV_FREE();
+ /** */
public static final int H5T_CONV_INIT = H5T_CONV_INIT();
+ /** */
public static final int H5T_CSET_ERROR = H5T_CSET_ERROR();
+ /** */
public static final int H5T_CSET_ASCII = H5T_CSET_ASCII();
+ /** */
public static final int H5T_CSET_UTF8 = H5T_CSET_UTF8();
+ /** */
public static final int H5T_CSET_RESERVED_10 = H5T_CSET_RESERVED_10();
+ /** */
public static final int H5T_CSET_RESERVED_11 = H5T_CSET_RESERVED_11();
+ /** */
public static final int H5T_CSET_RESERVED_12 = H5T_CSET_RESERVED_12();
+ /** */
public static final int H5T_CSET_RESERVED_13 = H5T_CSET_RESERVED_13();
+ /** */
public static final int H5T_CSET_RESERVED_14 = H5T_CSET_RESERVED_14();
+ /** */
public static final int H5T_CSET_RESERVED_15 = H5T_CSET_RESERVED_15();
+ /** */
public static final int H5T_CSET_RESERVED_2 = H5T_CSET_RESERVED_2();
+ /** */
public static final int H5T_CSET_RESERVED_3 = H5T_CSET_RESERVED_3();
+ /** */
public static final int H5T_CSET_RESERVED_4 = H5T_CSET_RESERVED_4();
+ /** */
public static final int H5T_CSET_RESERVED_5 = H5T_CSET_RESERVED_5();
+ /** */
public static final int H5T_CSET_RESERVED_6 = H5T_CSET_RESERVED_6();
+ /** */
public static final int H5T_CSET_RESERVED_7 = H5T_CSET_RESERVED_7();
+ /** */
public static final int H5T_CSET_RESERVED_8 = H5T_CSET_RESERVED_8();
+ /** */
public static final int H5T_CSET_RESERVED_9 = H5T_CSET_RESERVED_9();
+ /** */
public static final int H5T_DIR_ASCEND = H5T_DIR_ASCEND();
+ /** */
public static final int H5T_DIR_DEFAULT = H5T_DIR_DEFAULT();
+ /** */
public static final int H5T_DIR_DESCEND = H5T_DIR_DESCEND();
+ /** */
public static final int H5T_ENUM = H5T_ENUM();
+ /** */
public static final int H5T_FLOAT = H5T_FLOAT();
+ /** */
public static final long H5T_FORTRAN_S1 = H5T_FORTRAN_S1();
+ /** */
public static final long H5T_IEEE_F32BE = H5T_IEEE_F32BE();
+ /** */
public static final long H5T_IEEE_F32LE = H5T_IEEE_F32LE();
+ /** */
public static final long H5T_IEEE_F64BE = H5T_IEEE_F64BE();
+ /** */
public static final long H5T_IEEE_F64LE = H5T_IEEE_F64LE();
+ /** */
public static final int H5T_INTEGER = H5T_INTEGER();
+ /** */
public static final long H5T_INTEL_B16 = H5T_INTEL_B16();
+ /** */
public static final long H5T_INTEL_B32 = H5T_INTEL_B32();
+ /** */
public static final long H5T_INTEL_B64 = H5T_INTEL_B64();
+ /** */
public static final long H5T_INTEL_B8 = H5T_INTEL_B8();
+ /** */
public static final long H5T_INTEL_F32 = H5T_INTEL_F32();
+ /** */
public static final long H5T_INTEL_F64 = H5T_INTEL_F64();
+ /** */
public static final long H5T_INTEL_I16 = H5T_INTEL_I16();
+ /** */
public static final long H5T_INTEL_I32 = H5T_INTEL_I32();
+ /** */
public static final long H5T_INTEL_I64 = H5T_INTEL_I64();
+ /** */
public static final long H5T_INTEL_I8 = H5T_INTEL_I8();
+ /** */
public static final long H5T_INTEL_U16 = H5T_INTEL_U16();
+ /** */
public static final long H5T_INTEL_U32 = H5T_INTEL_U32();
+ /** */
public static final long H5T_INTEL_U64 = H5T_INTEL_U64();
+ /** */
public static final long H5T_INTEL_U8 = H5T_INTEL_U8();
+ /** */
public static final long H5T_MIPS_B16 = H5T_MIPS_B16();
+ /** */
public static final long H5T_MIPS_B32 = H5T_MIPS_B32();
+ /** */
public static final long H5T_MIPS_B64 = H5T_MIPS_B64();
+ /** */
public static final long H5T_MIPS_B8 = H5T_MIPS_B8();
+ /** */
public static final long H5T_MIPS_F32 = H5T_MIPS_F32();
+ /** */
public static final long H5T_MIPS_F64 = H5T_MIPS_F64();
+ /** */
public static final long H5T_MIPS_I16 = H5T_MIPS_I16();
+ /** */
public static final long H5T_MIPS_I32 = H5T_MIPS_I32();
+ /** */
public static final long H5T_MIPS_I64 = H5T_MIPS_I64();
+ /** */
public static final long H5T_MIPS_I8 = H5T_MIPS_I8();
+ /** */
public static final long H5T_MIPS_U16 = H5T_MIPS_U16();
+ /** */
public static final long H5T_MIPS_U32 = H5T_MIPS_U32();
+ /** */
public static final long H5T_MIPS_U64 = H5T_MIPS_U64();
+ /** */
public static final long H5T_MIPS_U8 = H5T_MIPS_U8();
+ /** */
public static final long H5T_NATIVE_B16 = H5T_NATIVE_B16();
+ /** */
public static final long H5T_NATIVE_B32 = H5T_NATIVE_B32();
+ /** */
public static final long H5T_NATIVE_B64 = H5T_NATIVE_B64();
+ /** */
public static final long H5T_NATIVE_B8 = H5T_NATIVE_B8();
+ /** */
public static final long H5T_NATIVE_CHAR = H5T_NATIVE_CHAR();
+ /** */
public static final long H5T_NATIVE_DOUBLE = H5T_NATIVE_DOUBLE();
+ /** */
public static final long H5T_NATIVE_FLOAT = H5T_NATIVE_FLOAT();
+ /** */
public static final long H5T_NATIVE_HADDR = H5T_NATIVE_HADDR();
+ /** */
public static final long H5T_NATIVE_HBOOL = H5T_NATIVE_HBOOL();
+ /** */
public static final long H5T_NATIVE_HERR = H5T_NATIVE_HERR();
+ /** */
public static final long H5T_NATIVE_HSIZE = H5T_NATIVE_HSIZE();
+ /** */
public static final long H5T_NATIVE_HSSIZE = H5T_NATIVE_HSSIZE();
+ /** */
public static final long H5T_NATIVE_INT = H5T_NATIVE_INT();
+ /** */
public static final long H5T_NATIVE_INT_FAST16 = H5T_NATIVE_INT_FAST16();
+ /** */
public static final long H5T_NATIVE_INT_FAST32 = H5T_NATIVE_INT_FAST32();
+ /** */
public static final long H5T_NATIVE_INT_FAST64 = H5T_NATIVE_INT_FAST64();
+ /** */
public static final long H5T_NATIVE_INT_FAST8 = H5T_NATIVE_INT_FAST8();
+ /** */
public static final long H5T_NATIVE_INT_LEAST16 = H5T_NATIVE_INT_LEAST16();
+ /** */
public static final long H5T_NATIVE_INT_LEAST32 = H5T_NATIVE_INT_LEAST32();
+ /** */
public static final long H5T_NATIVE_INT_LEAST64 = H5T_NATIVE_INT_LEAST64();
+ /** */
public static final long H5T_NATIVE_INT_LEAST8 = H5T_NATIVE_INT_LEAST8();
+ /** */
public static final long H5T_NATIVE_INT16 = H5T_NATIVE_INT16();
+ /** */
public static final long H5T_NATIVE_INT32 = H5T_NATIVE_INT32();
+ /** */
public static final long H5T_NATIVE_INT64 = H5T_NATIVE_INT64();
+ /** */
public static final long H5T_NATIVE_INT8 = H5T_NATIVE_INT8();
+ /** */
public static final long H5T_NATIVE_LDOUBLE = H5T_NATIVE_LDOUBLE();
+ /** */
public static final long H5T_NATIVE_LLONG = H5T_NATIVE_LLONG();
+ /** */
public static final long H5T_NATIVE_LONG = H5T_NATIVE_LONG();
+ /** */
public static final long H5T_NATIVE_OPAQUE = H5T_NATIVE_OPAQUE();
+ /** */
public static final long H5T_NATIVE_SCHAR = H5T_NATIVE_SCHAR();
+ /** */
public static final long H5T_NATIVE_SHORT = H5T_NATIVE_SHORT();
+ /** */
public static final long H5T_NATIVE_UCHAR = H5T_NATIVE_UCHAR();
+ /** */
public static final long H5T_NATIVE_UINT = H5T_NATIVE_UINT();
+ /** */
public static final long H5T_NATIVE_UINT_FAST16 = H5T_NATIVE_UINT_FAST16();
+ /** */
public static final long H5T_NATIVE_UINT_FAST32 = H5T_NATIVE_UINT_FAST32();
+ /** */
public static final long H5T_NATIVE_UINT_FAST64 = H5T_NATIVE_UINT_FAST64();
+ /** */
public static final long H5T_NATIVE_UINT_FAST8 = H5T_NATIVE_UINT_FAST8();
+ /** */
public static final long H5T_NATIVE_UINT_LEAST16 = H5T_NATIVE_UINT_LEAST16();
+ /** */
public static final long H5T_NATIVE_UINT_LEAST32 = H5T_NATIVE_UINT_LEAST32();
+ /** */
public static final long H5T_NATIVE_UINT_LEAST64 = H5T_NATIVE_UINT_LEAST64();
+ /** */
public static final long H5T_NATIVE_UINT_LEAST8 = H5T_NATIVE_UINT_LEAST8();
+ /** */
public static final long H5T_NATIVE_UINT16 = H5T_NATIVE_UINT16();
+ /** */
public static final long H5T_NATIVE_UINT32 = H5T_NATIVE_UINT32();
+ /** */
public static final long H5T_NATIVE_UINT64 = H5T_NATIVE_UINT64();
+ /** */
public static final long H5T_NATIVE_UINT8 = H5T_NATIVE_UINT8();
+ /** */
public static final long H5T_NATIVE_ULLONG = H5T_NATIVE_ULLONG();
+ /** */
public static final long H5T_NATIVE_ULONG = H5T_NATIVE_ULONG();
+ /** */
public static final long H5T_NATIVE_USHORT = H5T_NATIVE_USHORT();
+ /** */
public static final int H5T_NCLASSES = H5T_NCLASSES();
+ /** */
public static final int H5T_NO_CLASS = H5T_NO_CLASS();
+ /** */
public static final int H5T_NORM_ERROR = H5T_NORM_ERROR();
+ /** */
public static final int H5T_NORM_IMPLIED = H5T_NORM_IMPLIED();
+ /** */
public static final int H5T_NORM_MSBSET = H5T_NORM_MSBSET();
+ /** */
public static final int H5T_NORM_NONE = H5T_NORM_NONE();
+ /** */
public static final int H5T_NPAD = H5T_NPAD();
+ /** */
public static final int H5T_NSGN = H5T_NSGN();
+ /** */
public static final int H5T_OPAQUE = H5T_OPAQUE();
+ /** */
public static final int H5T_OPAQUE_TAG_MAX = H5T_OPAQUE_TAG_MAX(); /* 1.6.5 */
+ /** */
public static final int H5T_ORDER_BE = H5T_ORDER_BE();
+ /** */
public static final int H5T_ORDER_ERROR = H5T_ORDER_ERROR();
+ /** */
public static final int H5T_ORDER_LE = H5T_ORDER_LE();
+ /** */
public static final int H5T_ORDER_NONE = H5T_ORDER_NONE();
+ /** */
public static final int H5T_ORDER_VAX = H5T_ORDER_VAX();
+ /** */
public static final int H5T_PAD_BACKGROUND = H5T_PAD_BACKGROUND();
+ /** */
public static final int H5T_PAD_ERROR = H5T_PAD_ERROR();
+ /** */
public static final int H5T_PAD_ONE = H5T_PAD_ONE();
+ /** */
public static final int H5T_PAD_ZERO = H5T_PAD_ZERO();
+ /** */
public static final int H5T_PERS_DONTCARE = H5T_PERS_DONTCARE();
+ /** */
public static final int H5T_PERS_HARD = H5T_PERS_HARD();
+ /** */
public static final int H5T_PERS_SOFT = H5T_PERS_SOFT();
+ /** */
public static final int H5T_REFERENCE = H5T_REFERENCE();
+ /** */
public static final int H5T_SGN_2 = H5T_SGN_2();
+ /** */
public static final int H5T_SGN_ERROR = H5T_SGN_ERROR();
+ /** */
public static final int H5T_SGN_NONE = H5T_SGN_NONE();
+ /** */
public static final long H5T_STD_B16BE = H5T_STD_B16BE();
+ /** */
public static final long H5T_STD_B16LE = H5T_STD_B16LE();
+ /** */
public static final long H5T_STD_B32BE = H5T_STD_B32BE();
+ /** */
public static final long H5T_STD_B32LE = H5T_STD_B32LE();
+ /** */
public static final long H5T_STD_B64BE = H5T_STD_B64BE();
+ /** */
public static final long H5T_STD_B64LE = H5T_STD_B64LE();
+ /** */
public static final long H5T_STD_B8BE = H5T_STD_B8BE();
+ /** */
public static final long H5T_STD_B8LE = H5T_STD_B8LE();
+ /** */
public static final long H5T_STD_I16BE = H5T_STD_I16BE();
+ /** */
public static final long H5T_STD_I16LE = H5T_STD_I16LE();
+ /** */
public static final long H5T_STD_I32BE = H5T_STD_I32BE();
+ /** */
public static final long H5T_STD_I32LE = H5T_STD_I32LE();
+ /** */
public static final long H5T_STD_I64BE = H5T_STD_I64BE();
+ /** */
public static final long H5T_STD_I64LE = H5T_STD_I64LE();
+ /** */
public static final long H5T_STD_I8BE = H5T_STD_I8BE();
+ /** */
public static final long H5T_STD_I8LE = H5T_STD_I8LE();
+ /** */
public static final long H5T_STD_REF_DSETREG = H5T_STD_REF_DSETREG();
+ /** */
public static final long H5T_STD_REF_OBJ = H5T_STD_REF_OBJ();
+ /** */
public static final long H5T_STD_REF = H5T_STD_REF();
+ /** */
public static final long H5T_STD_U16BE = H5T_STD_U16BE();
+ /** */
public static final long H5T_STD_U16LE = H5T_STD_U16LE();
+ /** */
public static final long H5T_STD_U32BE = H5T_STD_U32BE();
+ /** */
public static final long H5T_STD_U32LE = H5T_STD_U32LE();
+ /** */
public static final long H5T_STD_U64BE = H5T_STD_U64BE();
+ /** */
public static final long H5T_STD_U64LE = H5T_STD_U64LE();
+ /** */
public static final long H5T_STD_U8BE = H5T_STD_U8BE();
+ /** */
public static final long H5T_STD_U8LE = H5T_STD_U8LE();
+ /** */
public static final int H5T_STR_ERROR = H5T_STR_ERROR();
+ /** */
public static final int H5T_STR_NULLPAD = H5T_STR_NULLPAD();
+ /** */
public static final int H5T_STR_NULLTERM = H5T_STR_NULLTERM();
+ /** */
public static final int H5T_STR_RESERVED_10 = H5T_STR_RESERVED_10();
+ /** */
public static final int H5T_STR_RESERVED_11 = H5T_STR_RESERVED_11();
+ /** */
public static final int H5T_STR_RESERVED_12 = H5T_STR_RESERVED_12();
+ /** */
public static final int H5T_STR_RESERVED_13 = H5T_STR_RESERVED_13();
+ /** */
public static final int H5T_STR_RESERVED_14 = H5T_STR_RESERVED_14();
+ /** */
public static final int H5T_STR_RESERVED_15 = H5T_STR_RESERVED_15();
+ /** */
public static final int H5T_STR_RESERVED_3 = H5T_STR_RESERVED_3();
+ /** */
public static final int H5T_STR_RESERVED_4 = H5T_STR_RESERVED_4();
+ /** */
public static final int H5T_STR_RESERVED_5 = H5T_STR_RESERVED_5();
+ /** */
public static final int H5T_STR_RESERVED_6 = H5T_STR_RESERVED_6();
+ /** */
public static final int H5T_STR_RESERVED_7 = H5T_STR_RESERVED_7();
+ /** */
public static final int H5T_STR_RESERVED_8 = H5T_STR_RESERVED_8();
+ /** */
public static final int H5T_STR_RESERVED_9 = H5T_STR_RESERVED_9();
+ /** */
public static final int H5T_STR_SPACEPAD = H5T_STR_SPACEPAD();
+ /** */
public static final int H5T_STRING = H5T_STRING();
+ /** */
public static final int H5T_TIME = H5T_TIME();
+ /** */
public static final long H5T_UNIX_D32BE = H5T_UNIX_D32BE();
+ /** */
public static final long H5T_UNIX_D32LE = H5T_UNIX_D32LE();
+ /** */
public static final long H5T_UNIX_D64BE = H5T_UNIX_D64BE();
+ /** */
public static final long H5T_UNIX_D64LE = H5T_UNIX_D64LE();
+ /** */
public static final long H5T_VARIABLE = H5T_VARIABLE();
+ /** */
public static final int H5T_VLEN = H5T_VLEN();
+ /** */
public static final int H5T_VL_T = H5T_VL_T();
+ /** */
public static final int H5VL_CAP_FLAG_NONE = H5VL_CAP_FLAG_NONE();
+ /** */
public static final int H5VL_CAP_FLAG_THREADSAFE = H5VL_CAP_FLAG_THREADSAFE();
+ /** */
public static final long H5VL_NATIVE = H5VL_NATIVE();
+ /** */
public static final String H5VL_NATIVE_NAME = H5VL_NATIVE_NAME();
+ /** */
public static final int H5VL_NATIVE_VALUE = H5VL_NATIVE_VALUE();
+ /** */
public static final int H5VL_NATIVE_VERSION = H5VL_NATIVE_VERSION();
+ /** */
public static final int H5_VOL_INVALID = H5_VOL_INVALID();
+ /** */
public static final int H5_VOL_NATIVE = H5_VOL_NATIVE();
+ /** */
public static final int H5_VOL_RESERVED = H5_VOL_RESERVED();
+ /** */
public static final int H5_VOL_MAX = H5_VOL_MAX();
+ /** Return values for filter callback function */
public static final int H5Z_CB_CONT = H5Z_CB_CONT();
+ /** Return values for filter callback function */
public static final int H5Z_CB_ERROR = H5Z_CB_ERROR();
+ /** Return values for filter callback function */
public static final int H5Z_CB_FAIL = H5Z_CB_FAIL();
+ /** Return values for filter callback function */
public static final int H5Z_CB_NO = H5Z_CB_NO();
+ /** Values to decide if EDC is enabled for reading data */
public static final int H5Z_DISABLE_EDC = H5Z_DISABLE_EDC();
+ /** Values to decide if EDC is enabled for reading data */
public static final int H5Z_ENABLE_EDC = H5Z_ENABLE_EDC();
+ /** Values to decide if EDC is enabled for reading data */
public static final int H5Z_ERROR_EDC = H5Z_ERROR_EDC();
+ /** Filter IDs - deflation like gzip */
public static final int H5Z_FILTER_DEFLATE = H5Z_FILTER_DEFLATE();
+ /** Filter IDs - no filter */
public static final int H5Z_FILTER_ERROR = H5Z_FILTER_ERROR();
+ /** Filter IDs - fletcher32 checksum of EDC */
public static final int H5Z_FILTER_FLETCHER32 = H5Z_FILTER_FLETCHER32();
+ /** Filter IDs - maximum filter id */
public static final int H5Z_FILTER_MAX = H5Z_FILTER_MAX();
+ /** Filter IDs - nbit compression */
public static final int H5Z_FILTER_NBIT = H5Z_FILTER_NBIT();
+ /** Filter IDs - reserved indefinitely */
public static final int H5Z_FILTER_NONE = H5Z_FILTER_NONE();
+ /** Filter IDs - filter ids below this value are reserved for library use */
public static final int H5Z_FILTER_RESERVED = H5Z_FILTER_RESERVED();
+ /** Filter IDs - scale+offset compression */
public static final int H5Z_FILTER_SCALEOFFSET = H5Z_FILTER_SCALEOFFSET();
+ /** Filter IDs - shuffle the data */
public static final int H5Z_FILTER_SHUFFLE = H5Z_FILTER_SHUFFLE();
+ /** Filter IDs - szip compression */
public static final int H5Z_FILTER_SZIP = H5Z_FILTER_SZIP();
+ /** Flags for filter definition (stored)
+ * definition flag mask */
public static final int H5Z_FLAG_DEFMASK = H5Z_FLAG_DEFMASK();
+ /** Additional flags for filter invocation (not stored)
+ * invocation flag mask */
public static final int H5Z_FLAG_INVMASK = H5Z_FLAG_INVMASK();
+ /** Flags for filter definition (stored)
+ * filter is mandatory */
public static final int H5Z_FLAG_MANDATORY = H5Z_FLAG_MANDATORY();
+ /** Flags for filter definition (stored)
+ * filter is optional */
public static final int H5Z_FLAG_OPTIONAL = H5Z_FLAG_OPTIONAL();
+ /** Additional flags for filter invocation (not stored)
+ * reverse direction; read */
public static final int H5Z_FLAG_REVERSE = H5Z_FLAG_REVERSE();
+ /** Additional flags for filter invocation (not stored)
+ * skip EDC filters for read */
public static final int H5Z_FLAG_SKIP_EDC = H5Z_FLAG_SKIP_EDC();
+ /** Symbol to remove all filters in H5Premove_filter */
+ public static final int H5Z_FILTER_ALL = H5Z_FILTER_ALL();
+ /** Maximum number of filters allowed in a pipeline */
public static final int H5Z_MAX_NFILTERS = H5Z_MAX_NFILTERS();
+ /** Values to decide if EDC is enabled for reading data */
public static final int H5Z_NO_EDC = H5Z_NO_EDC();
+ /** Bit flags for H5Zget_filter_info */
public static final int H5Z_FILTER_CONFIG_ENCODE_ENABLED = H5Z_FILTER_CONFIG_ENCODE_ENABLED();
+ /** Bit flags for H5Zget_filter_info */
public static final int H5Z_FILTER_CONFIG_DECODE_ENABLED = H5Z_FILTER_CONFIG_DECODE_ENABLED();
+ /** Special parameters for ScaleOffset filter*/
public static final int H5Z_SO_INT_MINBITS_DEFAULT = H5Z_SO_INT_MINBITS_DEFAULT();
+ /** Special parameters for ScaleOffset filter*/
public static final int H5Z_SO_FLOAT_DSCALE = H5Z_SO_FLOAT_DSCALE();
+ /** Special parameters for ScaleOffset filter*/
public static final int H5Z_SO_FLOAT_ESCALE = H5Z_SO_FLOAT_ESCALE();
+ /** Special parameters for ScaleOffset filter*/
public static final int H5Z_SO_INT = H5Z_SO_INT();
+ /** shuffle filter - Number of parameters that users can set */
public static final int H5Z_SHUFFLE_USER_NPARMS = H5Z_SHUFFLE_USER_NPARMS();
+ /** shuffle filter - Total number of parameters for filter */
public static final int H5Z_SHUFFLE_TOTAL_NPARMS = H5Z_SHUFFLE_TOTAL_NPARMS();
+ /** szip filter - Number of parameters that users can set */
public static final int H5Z_SZIP_USER_NPARMS = H5Z_SZIP_USER_NPARMS();
+ /** szip filter - Total number of parameters for filter */
public static final int H5Z_SZIP_TOTAL_NPARMS = H5Z_SZIP_TOTAL_NPARMS();
+ /** szip filter - "User" parameter for option mask */
public static final int H5Z_SZIP_PARM_MASK = H5Z_SZIP_PARM_MASK();
+ /** szip filter - "User" parameter for pixels-per-block */
public static final int H5Z_SZIP_PARM_PPB = H5Z_SZIP_PARM_PPB();
+ /** szip filter - "Local" parameter for bits-per-pixel */
public static final int H5Z_SZIP_PARM_BPP = H5Z_SZIP_PARM_BPP();
+ /** szip filter - "Local" parameter for pixels-per-scanline */
public static final int H5Z_SZIP_PARM_PPS = H5Z_SZIP_PARM_PPS();
+ /** nbit filter - Number of parameters that users can set */
public static final int H5Z_NBIT_USER_NPARMS = H5Z_NBIT_USER_NPARMS();
+ /** scale offset filter - Number of parameters that users can set */
public static final int H5Z_SCALEOFFSET_USER_NPARMS = H5Z_SCALEOFFSET_USER_NPARMS();
- public static final int H5Z_FILTER_ALL = H5Z_FILTER_ALL();
// /////////////////////////////////////////////////////////////////////////
// List of private native variables to get constant values from C //
@@ -831,16 +1618,18 @@ public class HDF5Constants {
private static native final long H5E_ARGS();
- private static native final long H5E_ATOM();
+ private static native final long H5E_ID();
private static native final long H5E_ATTR();
- private static native final long H5E_BADATOM();
+ private static native final long H5E_BADID();
private static native final long H5E_BADFILE();
private static native final long H5E_BADGROUP();
+ private static native final long H5E_BADITER();
+
private static native final long H5E_BADMESG();
private static native final long H5E_BADRANGE();
@@ -861,15 +1650,30 @@ public class HDF5Constants {
private static native final long H5E_CANAPPLY();
- // private static native final long H5E_CANTALLOC();
+ private static native final long H5E_CANTALLOC();
+
+ private static native final long H5E_CANTAPPEND();
+
+ private static native final long H5E_CANTATTACH();
+
+ private static native final long H5E_CANTCLEAN();
+
private static native final long H5E_CANTCLIP();
private static native final long H5E_CANTCLOSEFILE();
+ private static native final long H5E_CANTCLOSEOBJ();
+
+ private static native final long H5E_CANTCOMPARE();
+
+ private static native final long H5E_CANTCOMPUTE();
+
private static native final long H5E_CANTCONVERT();
private static native final long H5E_CANTCOPY();
+ private static native final long H5E_CANTCORK();
+
private static native final long H5E_CANTCOUNT();
private static native final long H5E_CANTCREATE();
@@ -882,18 +1686,36 @@ public class HDF5Constants {
private static native final long H5E_CANTDELETEFILE();
+ private static native final long H5E_CANTDEPEND();
+
+ private static native final long H5E_CANTDIRTY();
+
private static native final long H5E_CANTENCODE();
+ private static native final long H5E_CANTEXPUNGE();
+
+ private static native final long H5E_CANTEXTEND();
+
+ private static native final long H5E_CANTFILTER();
+
private static native final long H5E_CANTFLUSH();
private static native final long H5E_CANTFREE();
+ private static native final long H5E_CANTGATHER();
+
+ private static native final long H5E_CANTGC();
+
private static native final long H5E_CANTGET();
+ private static native final long H5E_CANTGETSIZE();
+
private static native final long H5E_CANTINC();
private static native final long H5E_CANTINIT();
+ private static native final long H5E_CANTINS();
+
private static native final long H5E_CANTINSERT();
private static native final long H5E_CANTLIST();
@@ -902,29 +1724,96 @@ public class HDF5Constants {
private static native final long H5E_CANTLOCK();
+ private static native final long H5E_CANTLOCKFILE();
+
+ private static native final long H5E_CANTMARKCLEAN();
+
+ private static native final long H5E_CANTMARKDIRTY();
+
+ private static native final long H5E_CANTMARKSERIALIZED();
+
+ private static native final long H5E_CANTMARKUNSERIALIZED();
+
+ private static native final long H5E_CANTMERGE();
+
+ private static native final long H5E_CANTMOVE();
+
+ private static native final long H5E_CANTMODIFY();
+
private static native final long H5E_CANTNEXT();
+ private static native final long H5E_CANTNOTIFY();
+
private static native final long H5E_CANTOPENFILE();
private static native final long H5E_CANTOPENOBJ();
- // private static native final long H5E_CANTRECV();
+ private static native final long H5E_CANTOPERATE();
+
+ private static native final long H5E_CANTPACK();
+
+ private static native final long H5E_CANTPIN();
+
+ private static native final long H5E_CANTPROTECT();
+
+ private static native final long H5E_CANTRECV();
+
+ private static native final long H5E_CANTREDISTRIBUTE();
+
private static native final long H5E_CANTREGISTER();
private static native final long H5E_CANTRELEASE();
+ private static native final long H5E_CANTREMOVE();
+
+ private static native final long H5E_CANTRENAME();
+
+ private static native final long H5E_CANTRESET();
+
+ private static native final long H5E_CANTRESIZE();
+
+ private static native final long H5E_CANTRESTORE();
+
+ private static native final long H5E_CANTREVIVE();
+
+ private static native final long H5E_CANTSHRINK();
+
private static native final long H5E_CANTSELECT();
private static native final long H5E_CANTSET();
+ private static native final long H5E_CANTSERIALIZE();
+
+ private static native final long H5E_CANTSORT();
+
private static native final long H5E_CANTSPLIT();
+ private static native final long H5E_CANTSWAP();
+
+ private static native final long H5E_CANTTAG();
+
+ private static native final long H5E_CANTUNCORK();
+
+ private static native final long H5E_CANTUNDEPEND();
+
private static native final long H5E_CANTUNLOCK();
+ private static native final long H5E_CANTUNLOCKFILE();
+
+ private static native final long H5E_CANTUNPIN();
+
+ private static native final long H5E_CANTUNPROTECT();
+
+ private static native final long H5E_CANTUNSERIALIZE();
+
+ private static native final long H5E_CANTUPDATE();
+
private static native final long H5E_CLOSEERROR();
private static native final long H5E_COMPLEN();
+ private static native final long H5E_CONTEXT();
+
private static native final long H5E_DATASET();
private static native final long H5E_DATASPACE();
@@ -935,10 +1824,16 @@ public class HDF5Constants {
private static native final long H5E_DUPCLASS();
+ private static native final long H5E_EARRAY();
+
private static native final long H5E_EFL();
+ private static native final long H5E_ERROR();
+
private static native final long H5E_EXISTS();
+ private static native final long H5E_FARRAY();
+
private static native final long H5E_FCNTL();
private static native final long H5E_FILE();
@@ -947,10 +1842,14 @@ public class HDF5Constants {
private static native final long H5E_FILEOPEN();
+ private static native final long H5E_FSPACE();
+
private static native final long H5E_FUNC();
private static native final long H5E_HEAP();
+ private static native final long H5E_INCONSISTENTSTATE();
+
private static native final long H5E_INTERNAL();
private static native final long H5E_IO();
@@ -959,8 +1858,12 @@ public class HDF5Constants {
private static native final long H5E_LINKCOUNT();
+ private static native final long H5E_LOGGING();
+
private static native final int H5E_MAJOR();
+ private static native final long H5E_MAP();
+
private static native final int H5E_MINOR();
private static native final long H5E_MOUNT();
@@ -969,6 +1872,12 @@ public class HDF5Constants {
private static native final long H5E_MPIERRSTR();
+ private static native final long H5E_NLINKS();
+
+ private static native final long H5E_NO_INDEPENDENT();
+
+ private static native final long H5E_NOENCODER();
+
private static native final long H5E_NOFILTER();
private static native final long H5E_NOIDS();
@@ -985,14 +1894,26 @@ public class HDF5Constants {
private static native final long H5E_NOTHDF5();
+ private static native final long H5E_NOTREGISTERED();
+
+ private static native final long H5E_OBJOPEN();
+
private static native final long H5E_OHDR();
+ private static native final long H5E_OPENERROR();
+
private static native final long H5E_OVERFLOW();
+ private static native final long H5E_PAGEBUF();
+
+ private static native final long H5E_PATH();
+
private static native final long H5E_PLINE();
private static native final long H5E_PLIST();
+ private static native final long H5E_PLUGIN();
+
private static native final long H5E_PROTECT();
private static native final long H5E_READERROR();
@@ -1005,12 +1926,24 @@ public class HDF5Constants {
private static native final long H5E_SEEKERROR();
+ private static native final long H5E_SETDISALLOWED();
+
private static native final long H5E_SETLOCAL();
+ private static native final long H5E_SLIST();
+
+ private static native final long H5E_SOHM();
+
private static native final long H5E_STORAGE();
private static native final long H5E_SYM();
+ private static native final long H5E_SYSERRSTR();
+
+ private static native final long H5E_SYSTEM();
+
+ private static native final long H5E_TRAVERSE();
+
private static native final long H5E_TRUNCATED();
private static native final long H5E_TST();
@@ -1037,8 +1970,6 @@ public class HDF5Constants {
private static native final int H5ES_STATUS_FAIL();
- private static native final int H5ES_STATUS_CANCELED();
-
private static native final int H5F_ACC_CREAT();
private static native final int H5F_ACC_EXCL();
diff --git a/java/src/hdf/hdf5lib/HDF5GroupInfo.java b/java/src/hdf/hdf5lib/HDF5GroupInfo.java
index 44b41bb..4c31af7 100644
--- a/java/src/hdf/hdf5lib/HDF5GroupInfo.java
+++ b/java/src/hdf/hdf5lib/HDF5GroupInfo.java
@@ -41,6 +41,8 @@ public class HDF5GroupInfo {
long mtime;
int linklen;
+ /** Container for the information reported about an HDF5 Object
+ * from the H5Gget_obj_info() method */
public HDF5GroupInfo() {
fileno = new long[2];
objno = new long[2];
@@ -88,27 +90,44 @@ public class HDF5GroupInfo {
linklen = 0;
}
- /* accessors */
+ /** fileno accessors
+ * @return the file number if successful
+ */
public long[] getFileno() {
return fileno;
}
+ /** accessors
+ * @return the object number if successful
+ */
public long[] getObjno() {
return objno;
}
+ /** accessors
+ * @return type of group if successful
+ */
public int getType() {
return type;
}
+ /** accessors
+ * @return the number of links in the group if successful
+ */
public int getNlink() {
return nlink;
}
+ /** accessors
+ * @return the modified time value if successful
+ */
public long getMtime() {
return mtime;
}
+ /** accessors
+ * @return a length of link name if successful
+ */
public int getLinklen() {
return linklen;
}
diff --git a/java/src/hdf/hdf5lib/HDFArray.java b/java/src/hdf/hdf5lib/HDFArray.java
index 0c2cd73..bb9357e 100644
--- a/java/src/hdf/hdf5lib/HDFArray.java
+++ b/java/src/hdf/hdf5lib/HDFArray.java
@@ -11,28 +11,25 @@
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-
package hdf.hdf5lib;
import hdf.hdf5lib.exceptions.HDF5Exception;
import hdf.hdf5lib.exceptions.HDF5JavaException;
+import java.util.Arrays;
/**
* This is a class for handling multidimensional arrays for HDF.
* <p>
- * The purpose is to allow the storage and retrieval of arbitrary array types
- * containing scientific data.
+ * The purpose is to allow the storage and retrieval of arbitrary array types containing scientific data.
* <p>
- * The methods support the conversion of an array to and from Java to a
- * one-dimensional array of bytes suitable for I/O by the C library.
+ * The methods support the conversion of an array to and from Java to a one-dimensional array of bytes suitable for I/O
+ * by the C library.
* <p>
- * This class heavily uses the <a
- * href="./hdf.hdf5lib.HDFNativeData.html">HDFNativeData</a> class to
- * convert between Java and C representations.
+ * This class heavily uses the <a href="./hdf.hdf5lib.HDFNativeData.html">HDFNativeData</a> class to convert between
+ * Java and C representations.
*/
public class HDFArray {
-
private Object _theArray = null;
private ArrayDescriptor _desc = null;
private byte[] _barray = null;
@@ -40,31 +37,27 @@ public class HDFArray {
// public HDFArray() {}
/**
- * The input must be a Java Array (possibly multidimensional) of primitive
- * numbers or sub-classes of Number.
+ * The input must be a Java Array (possibly multidimensional) of primitive numbers or sub-classes of Number.
* <p>
- * The input is analysed to determine the number of dimensions and size of
- * each dimension, as well as the type of the elements.
+ * The input is analysed to determine the number of dimensions and size of each dimension, as well as the type of
+ * the elements.
* <p>
* The description is saved in private variables, and used to convert data.
*
* @param anArray
- * The array object.
- *
+ * The array object.
* @exception hdf.hdf5lib.exceptions.HDF5Exception
- * object is not an array.
+ * object is not an array.
*/
- public HDFArray(Object anArray) throws HDF5Exception {
-
+ public HDFArray(Object anArray) throws HDF5Exception
+ {
if (anArray == null) {
- HDF5JavaException ex = new HDF5JavaException(
- "HDFArray: array is null?: ");
+ HDF5JavaException ex = new HDF5JavaException("HDFArray: array is null?: ");
}
Class tc = anArray.getClass();
if (tc.isArray() == false) {
/* exception: not an array */
- HDF5JavaException ex = new HDF5JavaException(
- "HDFArray: not an array?: ");
+ HDF5JavaException ex = new HDF5JavaException("HDFArray: not an array?: ");
throw (ex);
}
_theArray = anArray;
@@ -72,8 +65,7 @@ public class HDFArray {
/* extra error checking -- probably not needed */
if (_desc == null) {
- HDF5JavaException ex = new HDF5JavaException(
- "HDFArray: internal error: array description failed?: ");
+ HDF5JavaException ex = new HDF5JavaException("HDFArray: internal error: array description failed?: ");
throw (ex);
}
}
@@ -81,49 +73,48 @@ public class HDFArray {
/**
* Allocate a one-dimensional array of bytes sufficient to store the array.
*
- * @return A one-D array of bytes, filled with zeroes. The bytes are
- * sufficient to hold the data of the Array passed to the
- * constructor.
+ * @return A one-D array of bytes, filled with zeroes. The bytes are sufficient to hold the data of the Array passed
+ * to the constructor.
* @exception hdf.hdf5lib.exceptions.HDF5JavaException
- * Allocation failed.
+ * Allocation failed.
*/
- public byte[] emptyBytes() throws HDF5JavaException {
+ public byte[] emptyBytes()
+ throws HDF5JavaException
+ {
byte[] b = null;
- if ((ArrayDescriptor.dims == 1) && (ArrayDescriptor.NT == 'B')) {
+ if ((ArrayDescriptor.dims == 1)
+ && (ArrayDescriptor.NT == 'B')) {
b = (byte[]) _theArray;
}
else {
b = new byte[ArrayDescriptor.totalSize];
}
if (b == null) {
- HDF5JavaException ex = new HDF5JavaException(
- "HDFArray: emptyBytes: allocation failed");
+ HDF5JavaException ex = new HDF5JavaException("HDFArray: emptyBytes: allocation failed");
throw (ex);
}
return (b);
}
/**
- * Given a Java array of numbers, convert it to a one-dimensional array of
- * bytes in correct native order.
+ * Given a Java array of numbers, convert it to a one-dimensional array of bytes in correct native order.
*
- * @return A one-D array of bytes, constructed from the Array passed to the
- * constructor.
+ * @return A one-D array of bytes, constructed from the Array passed to the constructor.
* @exception hdf.hdf5lib.exceptions.HDF5JavaException
- * the object not an array or other internal error.
+ * the object not an array or other internal error.
*/
- public byte[] byteify() throws HDF5JavaException {
-
+ public byte[] byteify()
+ throws HDF5JavaException
+ {
if (_barray != null) {
return _barray;
}
if (_theArray == null) {
/* exception: not an array */
- HDF5JavaException ex = new HDF5JavaException(
- "HDFArray: byteify not an array?: ");
+ HDF5JavaException ex = new HDF5JavaException("HDFArray: byteify not an array?: ");
throw (ex);
}
@@ -140,73 +131,53 @@ public class HDFArray {
byte[] therow;
if (ArrayDescriptor.NT == 'I') {
- therow = HDFNativeData.intToByte(0,
- ArrayDescriptor.dimlen[1], (int[]) _theArray);
+ therow = HDFNativeData.intToByte(0, ArrayDescriptor.dimlen[1], (int[]) _theArray);
}
else if (ArrayDescriptor.NT == 'S') {
- therow = HDFNativeData.shortToByte(0,
- ArrayDescriptor.dimlen[1], (short[]) _theArray);
+ therow = HDFNativeData.shortToByte(0, ArrayDescriptor.dimlen[1], (short[]) _theArray);
}
else if (ArrayDescriptor.NT == 'F') {
- therow = HDFNativeData.floatToByte(0,
- ArrayDescriptor.dimlen[1], (float[]) _theArray);
+ therow = HDFNativeData.floatToByte(0, ArrayDescriptor.dimlen[1], (float[]) _theArray);
}
else if (ArrayDescriptor.NT == 'J') {
- therow = HDFNativeData.longToByte(0,
- ArrayDescriptor.dimlen[1], (long[]) _theArray);
+ therow = HDFNativeData.longToByte(0, ArrayDescriptor.dimlen[1], (long[]) _theArray);
}
else if (ArrayDescriptor.NT == 'D') {
- therow = HDFNativeData
- .doubleToByte(0, ArrayDescriptor.dimlen[1],
- (double[]) _theArray);
+ therow = HDFNativeData.doubleToByte(0, ArrayDescriptor.dimlen[1], (double[]) _theArray);
}
else if (ArrayDescriptor.NT == 'L') {
if (ArrayDescriptor.className.equals("java.lang.Byte")) {
therow = ByteObjToByte((Byte[]) _theArray);
}
- else if (ArrayDescriptor.className
- .equals("java.lang.Integer")) {
+ else if (ArrayDescriptor.className.equals("java.lang.Integer")) {
therow = IntegerToByte((Integer[]) _theArray);
}
- else if (ArrayDescriptor.className
- .equals("java.lang.Short")) {
+ else if (ArrayDescriptor.className.equals("java.lang.Short")) {
therow = ShortToByte((Short[]) _theArray);
}
- else if (ArrayDescriptor.className
- .equals("java.lang.Float")) {
+ else if (ArrayDescriptor.className.equals("java.lang.Float")) {
therow = FloatObjToByte((Float[]) _theArray);
}
- else if (ArrayDescriptor.className
- .equals("java.lang.Double")) {
+ else if (ArrayDescriptor.className.equals("java.lang.Double")) {
therow = DoubleObjToByte((Double[]) _theArray);
}
- else if (ArrayDescriptor.className
- .equals("java.lang.Long")) {
+ else if (ArrayDescriptor.className.equals("java.lang.Long")) {
therow = LongObjToByte((Long[]) _theArray);
}
else {
- HDF5JavaException ex = new HDF5JavaException(
- "HDFArray: unknown type of Object?");
+ HDF5JavaException ex = new HDF5JavaException("HDFArray: unknown type of Object?");
throw (ex);
}
}
else {
- HDF5JavaException ex = new HDF5JavaException(
- "HDFArray: unknown type of data?");
+ HDF5JavaException ex = new HDF5JavaException("HDFArray: unknown type of data?");
throw (ex);
}
- System
- .arraycopy(
- therow,
- 0,
- _barray,
- 0,
- (ArrayDescriptor.dimlen[1] * ArrayDescriptor.NTsize));
+ System.arraycopy(therow, 0, _barray, 0, (ArrayDescriptor.dimlen[1] * ArrayDescriptor.NTsize));
return _barray;
}
catch (OutOfMemoryError err) {
- HDF5JavaException ex = new HDF5JavaException(
- "HDFArray: byteify array too big?");
+ HDF5JavaException ex = new HDF5JavaException("HDFArray: byteify array too big?");
throw (ex);
}
}
@@ -216,8 +187,7 @@ public class HDFArray {
_barray = new byte[ArrayDescriptor.totalSize];
}
catch (OutOfMemoryError err) {
- HDF5JavaException ex = new HDF5JavaException(
- "HDFArray: byteify array too big?");
+ HDF5JavaException ex = new HDF5JavaException("HDFArray: byteify array too big?");
throw (ex);
}
@@ -240,8 +210,7 @@ public class HDFArray {
else {
/* check range of index */
if (index > (ArrayDescriptor.dimlen[i] - 1)) {
- throw new java.lang.IndexOutOfBoundsException(
- "HDFArray: byteify index OOB?");
+ throw new java.lang.IndexOutOfBoundsException("HDFArray: byteify index OOB?");
}
oo = java.lang.reflect.Array.get(oo, index);
ArrayDescriptor.currentindex[i] = index;
@@ -253,242 +222,187 @@ public class HDFArray {
byte arow[];
try {
if (ArrayDescriptor.NT == 'J') {
- arow = HDFNativeData
- .longToByte(
- 0,
- ArrayDescriptor.dimlen[ArrayDescriptor.dims],
- (long[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
- arow = HDFNativeData
- .longToByte(
- 0,
- ArrayDescriptor.dimlen[ArrayDescriptor.dims],
- (long[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
+ arow = HDFNativeData.longToByte(0, ArrayDescriptor.dimlen[ArrayDescriptor.dims],
+ (long[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
+ arow = HDFNativeData.longToByte(0, ArrayDescriptor.dimlen[ArrayDescriptor.dims],
+ (long[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
}
else if (ArrayDescriptor.NT == 'I') {
- arow = HDFNativeData
- .intToByte(
- 0,
- ArrayDescriptor.dimlen[ArrayDescriptor.dims],
- (int[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
+ arow = HDFNativeData.intToByte(0, ArrayDescriptor.dimlen[ArrayDescriptor.dims],
+ (int[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
}
else if (ArrayDescriptor.NT == 'S') {
- arow = HDFNativeData
- .shortToByte(
- 0,
- ArrayDescriptor.dimlen[ArrayDescriptor.dims],
- (short[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
+ arow = HDFNativeData.shortToByte(0, ArrayDescriptor.dimlen[ArrayDescriptor.dims],
+ (short[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
}
else if (ArrayDescriptor.NT == 'B') {
arow = (byte[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1];
}
else if (ArrayDescriptor.NT == 'F') {
/* 32 bit float */
- arow = HDFNativeData
- .floatToByte(
- 0,
- ArrayDescriptor.dimlen[ArrayDescriptor.dims],
- (float[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
+ arow = HDFNativeData.floatToByte(0, ArrayDescriptor.dimlen[ArrayDescriptor.dims],
+ (float[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
}
else if (ArrayDescriptor.NT == 'D') {
/* 64 bit float */
- arow = HDFNativeData
- .doubleToByte(
- 0,
- ArrayDescriptor.dimlen[ArrayDescriptor.dims],
- (double[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
+ arow = HDFNativeData.doubleToByte(0, ArrayDescriptor.dimlen[ArrayDescriptor.dims],
+ (double[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
}
else if (ArrayDescriptor.NT == 'L') {
if (ArrayDescriptor.className.equals("java.lang.Byte")) {
arow = ByteObjToByte((Byte[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
}
- else if (ArrayDescriptor.className
- .equals("java.lang.Integer")) {
+ else if (ArrayDescriptor.className.equals("java.lang.Integer")) {
arow = IntegerToByte((Integer[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
}
- else if (ArrayDescriptor.className
- .equals("java.lang.Short")) {
+ else if (ArrayDescriptor.className.equals("java.lang.Short")) {
arow = ShortToByte((Short[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
}
- else if (ArrayDescriptor.className
- .equals("java.lang.Float")) {
+ else if (ArrayDescriptor.className.equals("java.lang.Float")) {
arow = FloatObjToByte((Float[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
}
- else if (ArrayDescriptor.className
- .equals("java.lang.Double")) {
+ else if (ArrayDescriptor.className.equals("java.lang.Double")) {
arow = DoubleObjToByte((Double[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
}
else if (ArrayDescriptor.className.equals("java.lang.Long")) {
arow = LongObjToByte((Long[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]);
}
else {
- HDF5JavaException ex = new HDF5JavaException(
- "HDFArray: byteify Object type not implemented?");
+ HDF5JavaException ex = new HDF5JavaException("HDFArray: byteify Object type not implemented?");
throw (ex);
}
}
else {
- HDF5JavaException ex = new HDF5JavaException(
- "HDFArray: byteify unknown type not implemented?");
+ HDF5JavaException ex = new HDF5JavaException("HDFArray: byteify unknown type not implemented?");
throw (ex);
}
- System
- .arraycopy(
- arow,
- 0,
- _barray,
- n,
- (ArrayDescriptor.dimlen[ArrayDescriptor.dims] * ArrayDescriptor.NTsize));
+ System.arraycopy(arow, 0, _barray, n,
+ (ArrayDescriptor.dimlen[ArrayDescriptor.dims] * ArrayDescriptor.NTsize));
n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1];
}
catch (OutOfMemoryError err) {
- HDF5JavaException ex = new HDF5JavaException(
- "HDFArray: byteify array too big?");
+ HDF5JavaException ex = new HDF5JavaException("HDFArray: byteify array too big?");
throw (ex);
}
}
/* assert: the whole array is completed--currentindex should == len - 1 */
-
/* error checks */
-
if (n < ArrayDescriptor.totalSize) {
- throw new java.lang.InternalError(new String(
- "HDFArray::byteify: Panic didn't complete all input data: n= "
- + n + " size = " + ArrayDescriptor.totalSize));
+ throw new java.lang.InternalError(new String("HDFArray::byteify: Panic didn't complete all input data: n= "
+ + n + " size = " + ArrayDescriptor.totalSize));
}
for (i = 0; i < ArrayDescriptor.dims; i++) {
if (ArrayDescriptor.currentindex[i] != ArrayDescriptor.dimlen[i] - 1) {
throw new java.lang.InternalError(new String(
- "Panic didn't complete all data: currentindex[" + i
- + "] = " + ArrayDescriptor.currentindex[i]
- + " (should be "
- + (ArrayDescriptor.dimlen[i] - 1) + " ?)"));
+ "Panic didn't complete all data: currentindex[" + i + "] = " + ArrayDescriptor.currentindex[i]
+ + " (should be " + (ArrayDescriptor.dimlen[i] - 1) + " ?)"));
}
}
return _barray;
}
/**
- * Given a one-dimensional array of bytes representing numbers, convert it
- * to a java array of the shape and size passed to the constructor.
+ * Given a one-dimensional array of bytes representing numbers, convert it to a java array of the shape and size
+ * passed to the constructor.
*
* @param bytes
- * The bytes to construct the Array.
- * @return An Array (possibly multidimensional) of primitive or number
- * objects.
- * @exception hdf.hdf5lib.exceptions.HDF5JavaException
- * the object not an array or other internal error.
+ * The bytes to construct the Array.
+ * @return
+ * An Array (possibly multidimensional) of primitive or number objects.
+ * @exception
+ * hdf.hdf5lib.exceptions.HDF5JavaException the object not an array or other internal error.
*/
- public Object arrayify(byte[] bytes) throws HDF5JavaException {
-
+ public Object arrayify(byte[] bytes) throws HDF5JavaException
+ {
if (_theArray == null) {
/* exception: not an array */
- HDF5JavaException ex = new HDF5JavaException(
- "arrayify: not an array?: ");
+ HDF5JavaException ex = new HDF5JavaException("arrayify: not an array?: ");
throw (ex);
}
if (java.lang.reflect.Array.getLength(bytes) != ArrayDescriptor.totalSize) {
/* exception: array not right size */
- HDF5JavaException ex = new HDF5JavaException(
- "arrayify: array is wrong size?: ");
+ HDF5JavaException ex = new HDF5JavaException("arrayify: array is wrong size?: ");
throw (ex);
}
_barray = bytes; /* hope that the bytes are correct.... */
+
if (ArrayDescriptor.dims == 1) {
/* special case */
/* 2 data copies here! */
try {
if (ArrayDescriptor.NT == 'I') {
int[] x = HDFNativeData.byteToInt(_barray);
- System.arraycopy(x, 0, _theArray, 0,
- ArrayDescriptor.dimlen[1]);
+ System.arraycopy(x, 0, _theArray, 0, ArrayDescriptor.dimlen[1]);
return _theArray;
}
else if (ArrayDescriptor.NT == 'S') {
short[] x = HDFNativeData.byteToShort(_barray);
- System.arraycopy(x, 0, _theArray, 0,
- ArrayDescriptor.dimlen[1]);
+ System.arraycopy(x, 0, _theArray, 0, ArrayDescriptor.dimlen[1]);
return _theArray;
}
else if (ArrayDescriptor.NT == 'F') {
float x[] = HDFNativeData.byteToFloat(_barray);
- System.arraycopy(x, 0, _theArray, 0,
- ArrayDescriptor.dimlen[1]);
+ System.arraycopy(x, 0, _theArray, 0, ArrayDescriptor.dimlen[1]);
return _theArray;
}
else if (ArrayDescriptor.NT == 'J') {
long x[] = HDFNativeData.byteToLong(_barray);
- System.arraycopy(x, 0, _theArray, 0,
- ArrayDescriptor.dimlen[1]);
+ System.arraycopy(x, 0, _theArray, 0, ArrayDescriptor.dimlen[1]);
return _theArray;
}
else if (ArrayDescriptor.NT == 'D') {
double x[] = HDFNativeData.byteToDouble(_barray);
- System.arraycopy(x, 0, _theArray, 0,
- ArrayDescriptor.dimlen[1]);
+ System.arraycopy(x, 0, _theArray, 0, ArrayDescriptor.dimlen[1]);
return _theArray;
}
else if (ArrayDescriptor.NT == 'B') {
- System.arraycopy(_barray, 0, _theArray, 0,
- ArrayDescriptor.dimlen[1]);
+ System.arraycopy(_barray, 0, _theArray, 0, ArrayDescriptor.dimlen[1]);
return _theArray;
}
else if (ArrayDescriptor.NT == 'L') {
if (ArrayDescriptor.className.equals("java.lang.Byte")) {
Byte I[] = ByteToByteObj(_barray);
- System.arraycopy(I, 0, _theArray, 0,
- ArrayDescriptor.dimlen[1]);
+ System.arraycopy(I, 0, _theArray, 0, ArrayDescriptor.dimlen[1]);
return _theArray;
}
- else if (ArrayDescriptor.className
- .equals("java.lang.Integer")) {
+ else if (ArrayDescriptor.className.equals("java.lang.Integer")) {
Integer I[] = ByteToInteger(_barray);
- System.arraycopy(I, 0, _theArray, 0,
- ArrayDescriptor.dimlen[1]);
+ System.arraycopy(I, 0, _theArray, 0, ArrayDescriptor.dimlen[1]);
return _theArray;
}
- else if (ArrayDescriptor.className
- .equals("java.lang.Short")) {
+ else if (ArrayDescriptor.className.equals("java.lang.Short")) {
Short I[] = ByteToShort(_barray);
- System.arraycopy(I, 0, _theArray, 0,
- ArrayDescriptor.dimlen[1]);
+ System.arraycopy(I, 0, _theArray, 0, ArrayDescriptor.dimlen[1]);
return _theArray;
}
- else if (ArrayDescriptor.className
- .equals("java.lang.Float")) {
+ else if (ArrayDescriptor.className.equals("java.lang.Float")) {
Float I[] = ByteToFloatObj(_barray);
- System.arraycopy(I, 0, _theArray, 0,
- ArrayDescriptor.dimlen[1]);
+ System.arraycopy(I, 0, _theArray, 0, ArrayDescriptor.dimlen[1]);
return _theArray;
}
- else if (ArrayDescriptor.className
- .equals("java.lang.Double")) {
+ else if (ArrayDescriptor.className.equals("java.lang.Double")) {
Double I[] = ByteToDoubleObj(_barray);
- System.arraycopy(I, 0, _theArray, 0,
- ArrayDescriptor.dimlen[1]);
+ System.arraycopy(I, 0, _theArray, 0, ArrayDescriptor.dimlen[1]);
return _theArray;
}
else if (ArrayDescriptor.className.equals("java.lang.Long")) {
Long I[] = ByteToLongObj(_barray);
- System.arraycopy(I, 0, _theArray, 0,
- ArrayDescriptor.dimlen[1]);
+ System.arraycopy(I, 0, _theArray, 0, ArrayDescriptor.dimlen[1]);
return _theArray;
}
else {
- HDF5JavaException ex = new HDF5JavaException(
- "arrayify: Object type not implemented yet...");
+ HDF5JavaException ex = new HDF5JavaException("arrayify: Object type not implemented yet...");
throw (ex);
}
}
else {
- HDF5JavaException ex = new HDF5JavaException(
- "arrayify: unknown type not implemented yet...");
+ HDF5JavaException ex = new HDF5JavaException("arrayify: unknown type not implemented yet...");
throw (ex);
}
}
catch (OutOfMemoryError err) {
- HDF5JavaException ex = new HDF5JavaException(
- "HDFArray: arrayify array too big?");
+ HDF5JavaException ex = new HDF5JavaException("HDFArray: arrayify array too big?");
throw (ex);
}
}
@@ -496,8 +410,54 @@ public class HDFArray {
Object oo = _theArray;
int n = 0; /* the current byte */
+ int m = 0; /* the current array index */
int index = 0;
int i;
+ Object flattenedArray = null;
+
+ switch (ArrayDescriptor.NT) {
+ case 'J':
+ flattenedArray = (Object) HDFNativeData.byteToLong(_barray);
+ break;
+ case 'S':
+ flattenedArray = (Object) HDFNativeData.byteToShort(_barray);
+ break;
+ case 'I':
+ flattenedArray = (Object) HDFNativeData.byteToInt(_barray);
+ break;
+ case 'F':
+ flattenedArray = (Object) HDFNativeData.byteToFloat(_barray);
+ break;
+ case 'D':
+ flattenedArray = (Object) HDFNativeData.byteToDouble(_barray);
+ break;
+ case 'B':
+ flattenedArray = (Object) _barray;
+ break;
+ case 'L':
+ {
+ if (ArrayDescriptor.className.equals("java.lang.Byte"))
+ flattenedArray = (Object) ByteToByteObj(_barray);
+ else if (ArrayDescriptor.className.equals("java.lang.Short"))
+ flattenedArray = (Object) ByteToShort(_barray);
+ else if (ArrayDescriptor.className.equals("java.lang.Integer"))
+ flattenedArray = (Object) ByteToInteger(_barray);
+ else if (ArrayDescriptor.className.equals("java.lang.Long"))
+ flattenedArray = (Object) ByteToLongObj(_barray);
+ else if (ArrayDescriptor.className.equals("java.lang.Float"))
+ flattenedArray = (Object) ByteToFloatObj(_barray);
+ else if (ArrayDescriptor.className.equals("java.lang.Double"))
+ flattenedArray = (Object) ByteToDoubleObj(_barray);
+ else {
+ HDF5JavaException ex = new HDF5JavaException("HDFArray: unsupported Object type: " + ArrayDescriptor.NT);
+ throw (ex);
+ }
+ } // end of statement for arrays of boxed objects
+ default:
+ HDF5JavaException ex = new HDF5JavaException("HDFArray: unknown or unsupported type: " + ArrayDescriptor.NT);
+ throw (ex);
+ } // end of switch statement for arrays of primitives
+
while (n < ArrayDescriptor.totalSize) {
oo = ArrayDescriptor.objs[0];
index = n / ArrayDescriptor.bytetoindex[0];
@@ -524,222 +484,86 @@ public class HDFArray {
/* array-ify */
try {
- if (ArrayDescriptor.NT == 'J') {
- long[] arow = HDFNativeData.byteToLong(n,
- ArrayDescriptor.dimlen[ArrayDescriptor.dims],
- _barray);
- java.lang.reflect.Array
- .set(
- ArrayDescriptor.objs[ArrayDescriptor.dims - 2],
- (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]),
- arow);
- n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1];
- ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++;
- }
- else if (ArrayDescriptor.NT == 'I') {
- int[] arow = HDFNativeData.byteToInt(n,
- ArrayDescriptor.dimlen[ArrayDescriptor.dims],
- _barray);
- java.lang.reflect.Array
- .set(
- ArrayDescriptor.objs[ArrayDescriptor.dims - 2],
- (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]),
- arow);
-
- n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1];
- ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++;
- }
- else if (ArrayDescriptor.NT == 'S') {
- short[] arow = HDFNativeData.byteToShort(n,
- ArrayDescriptor.dimlen[ArrayDescriptor.dims],
- _barray);
- java.lang.reflect.Array
- .set(
- ArrayDescriptor.objs[ArrayDescriptor.dims - 2],
- (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]),
- arow);
-
- n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1];
- ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++;
- }
- else if (ArrayDescriptor.NT == 'B') {
- System.arraycopy(_barray, n,
- ArrayDescriptor.objs[ArrayDescriptor.dims - 1], 0,
- ArrayDescriptor.dimlen[ArrayDescriptor.dims]);
- n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1];
- }
- else if (ArrayDescriptor.NT == 'F') {
- float arow[] = HDFNativeData.byteToFloat(n,
- ArrayDescriptor.dimlen[ArrayDescriptor.dims],
- _barray);
- java.lang.reflect.Array
- .set(
- ArrayDescriptor.objs[ArrayDescriptor.dims - 2],
- (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]),
- arow);
-
- n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1];
- ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++;
- }
- else if (ArrayDescriptor.NT == 'D') {
- double[] arow = HDFNativeData.byteToDouble(n,
- ArrayDescriptor.dimlen[ArrayDescriptor.dims],
- _barray);
- java.lang.reflect.Array
- .set(
- ArrayDescriptor.objs[ArrayDescriptor.dims - 2],
- (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]),
- arow);
-
- n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1];
- ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++;
- }
- else if (ArrayDescriptor.NT == 'L') {
- if (ArrayDescriptor.className.equals("java.lang.Byte")) {
- Byte I[] = ByteToByteObj(n,
- ArrayDescriptor.dimlen[ArrayDescriptor.dims],
- _barray);
- java.lang.reflect.Array
- .set(
- ArrayDescriptor.objs[ArrayDescriptor.dims - 2],
- (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]),
- I);
-
- n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1];
- ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++;
- }
- else if (ArrayDescriptor.className
- .equals("java.lang.Integer")) {
- Integer I[] = ByteToInteger(n,
- ArrayDescriptor.dimlen[ArrayDescriptor.dims],
- _barray);
- java.lang.reflect.Array
- .set(
- ArrayDescriptor.objs[ArrayDescriptor.dims - 2],
- (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]),
- I);
-
- n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1];
- ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++;
- }
- else if (ArrayDescriptor.className
- .equals("java.lang.Short")) {
- Short I[] = ByteToShort(n,
- ArrayDescriptor.dimlen[ArrayDescriptor.dims],
- _barray);
- java.lang.reflect.Array
- .set(
- ArrayDescriptor.objs[ArrayDescriptor.dims - 2],
- (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]),
- I);
-
- n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1];
- ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++;
- }
- else if (ArrayDescriptor.className
- .equals("java.lang.Float")) {
- Float I[] = ByteToFloatObj(n,
- ArrayDescriptor.dimlen[ArrayDescriptor.dims],
- _barray);
- java.lang.reflect.Array
- .set(
- ArrayDescriptor.objs[ArrayDescriptor.dims - 2],
- (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]),
- I);
-
- n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1];
- ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++;
- }
- else if (ArrayDescriptor.className
- .equals("java.lang.Double")) {
- Double I[] = ByteToDoubleObj(n,
- ArrayDescriptor.dimlen[ArrayDescriptor.dims],
- _barray);
- java.lang.reflect.Array
- .set(
- ArrayDescriptor.objs[ArrayDescriptor.dims - 2],
- (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]),
- I);
-
- n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1];
- ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++;
- }
- else if (ArrayDescriptor.className.equals("java.lang.Long")) {
- Long I[] = ByteToLongObj(n,
- ArrayDescriptor.dimlen[ArrayDescriptor.dims],
- _barray);
- java.lang.reflect.Array
- .set(
- ArrayDescriptor.objs[ArrayDescriptor.dims - 2],
- (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]),
- I);
-
- n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1];
- ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++;
- }
- else {
- HDF5JavaException ex = new HDF5JavaException(
- "HDFArray: unsupported Object type: "
- + ArrayDescriptor.NT);
- throw (ex);
- }
- }
- else {
- HDF5JavaException ex = new HDF5JavaException(
- "HDFArray: unknown or unsupported type: "
- + ArrayDescriptor.NT);
- throw (ex);
- }
+ Object arow = null;
+ int mm = m + ArrayDescriptor.dimlen[ArrayDescriptor.dims];
+ switch (ArrayDescriptor.NT) {
+ case 'B':
+ arow = (Object) Arrays.copyOfRange((byte[]) flattenedArray, m, mm);
+ break;
+ case 'S':
+ arow = (Object) Arrays.copyOfRange((short[]) flattenedArray, m, mm);
+ break;
+ case 'I':
+ arow = (Object) Arrays.copyOfRange((int[]) flattenedArray, m, mm);
+ break;
+ case 'J':
+ arow = (Object) Arrays.copyOfRange((long[]) flattenedArray, m, mm);
+ break;
+ case 'F':
+ arow = (Object) Arrays.copyOfRange((float[]) flattenedArray, m, mm);
+ break;
+ case 'D':
+ arow = (Object) Arrays.copyOfRange((double[]) flattenedArray, m, mm);
+ break;
+ case 'L':
+ {
+ if (ArrayDescriptor.className.equals("java.lang.Byte"))
+ arow = (Object) Arrays.copyOfRange((Byte[]) flattenedArray, m, mm);
+ else if (ArrayDescriptor.className.equals("java.lang.Short"))
+ arow = (Object) Arrays.copyOfRange((Short[]) flattenedArray, m, mm);
+ else if (ArrayDescriptor.className.equals("java.lang.Integer"))
+ arow = (Object) Arrays.copyOfRange((Integer[]) flattenedArray, m, mm);
+ else if (ArrayDescriptor.className.equals("java.lang.Long"))
+ arow = (Object) Arrays.copyOfRange((Long[]) flattenedArray, m, mm);
+ else if (ArrayDescriptor.className.equals("java.lang.Float"))
+ arow = (Object) Arrays.copyOfRange((Float[]) flattenedArray, m, mm);
+ else if (ArrayDescriptor.className.equals("java.lang.Double"))
+ arow = (Object) Arrays.copyOfRange((Double[]) flattenedArray, m, mm);
+ else {
+ HDF5JavaException ex = new HDF5JavaException("HDFArray: unsupported Object type: " + ArrayDescriptor.NT);
+ throw (ex);
+ }
+ } // end of statement for arrays of boxed numerics
+ } // end of switch statement for arrays of primitives
+
+ java.lang.reflect.Array.set(ArrayDescriptor.objs[ArrayDescriptor.dims - 2],
+ (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]), arow);
+ n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1];
+ ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++;
+ m = mm;
}
catch (OutOfMemoryError err) {
- HDF5JavaException ex = new HDF5JavaException(
- "HDFArray: arrayify array too big?");
+ HDF5JavaException ex = new HDF5JavaException("HDFArray: arrayify array too big?");
throw (ex);
}
-
}
/* assert: the whole array is completed--currentindex should == len - 1 */
-
/* error checks */
-
if (n < ArrayDescriptor.totalSize) {
- throw new java.lang.InternalError(new String(
- "HDFArray::arrayify Panic didn't complete all input data: n= "
- + n + " size = " + ArrayDescriptor.totalSize));
+ throw new java.lang.InternalError(new String("HDFArray::arrayify Panic didn't complete all input data: n= "
+ + n + " size = " + ArrayDescriptor.totalSize));
}
for (i = 0; i <= ArrayDescriptor.dims - 2; i++) {
if (ArrayDescriptor.currentindex[i] != ArrayDescriptor.dimlen[i] - 1) {
- throw new java.lang.InternalError(new String(
- "HDFArray::arrayify Panic didn't complete all data: currentindex["
- + i + "] = " + ArrayDescriptor.currentindex[i]
- + " (should be "
- + (ArrayDescriptor.dimlen[i] - 1) + "?"));
- }
- }
- if (ArrayDescriptor.NT != 'B') {
- if (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1] != ArrayDescriptor.dimlen[ArrayDescriptor.dims - 1]) {
- throw new java.lang.InternalError(new String(
- "HDFArray::arrayify Panic didn't complete all data: currentindex["
- + i + "] = " + ArrayDescriptor.currentindex[i]
- + " (should be " + (ArrayDescriptor.dimlen[i])
+ throw new java.lang.InternalError(
+ new String("HDFArray::arrayify Panic didn't complete all data: currentindex[" + i + "] = "
+ + ArrayDescriptor.currentindex[i] + " (should be " + (ArrayDescriptor.dimlen[i] - 1)
+ "?"));
}
}
- else {
- if (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1] != (ArrayDescriptor.dimlen[ArrayDescriptor.dims - 1] - 1)) {
- throw new java.lang.InternalError(new String(
- "HDFArray::arrayify Panic didn't complete all data: currentindex["
- + i + "] = " + ArrayDescriptor.currentindex[i]
- + " (should be "
- + (ArrayDescriptor.dimlen[i] - 1) + "?"));
- }
+ if (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1] != ArrayDescriptor.dimlen[ArrayDescriptor.dims
+ - 1]) {
+ throw new java.lang.InternalError(
+ new String("HDFArray::arrayify Panic didn't complete all data: currentindex[" + i + "] = "
+ + ArrayDescriptor.currentindex[i] + " (should be " + (ArrayDescriptor.dimlen[i]) + "?"));
}
return _theArray;
}
- private byte[] IntegerToByte(Integer in[]) {
+ private byte[] IntegerToByte(Integer in[])
+ {
int nelems = java.lang.reflect.Array.getLength(in);
int[] out = new int[nelems];
@@ -749,7 +573,8 @@ public class HDFArray {
return HDFNativeData.intToByte(0, nelems, out);
}
- private Integer[] ByteToInteger(byte[] bin) {
+ private Integer[] ByteToInteger(byte[] bin)
+ {
int in[] = HDFNativeData.byteToInt(bin);
int nelems = java.lang.reflect.Array.getLength(in);
Integer[] out = new Integer[nelems];
@@ -760,7 +585,8 @@ public class HDFArray {
return out;
}
- private Integer[] ByteToInteger(int start, int len, byte[] bin) {
+ private Integer[] ByteToInteger(int start, int len, byte[] bin)
+ {
int in[] = HDFNativeData.byteToInt(start, len, bin);
int nelems = java.lang.reflect.Array.getLength(in);
Integer[] out = new Integer[nelems];
@@ -771,7 +597,8 @@ public class HDFArray {
return out;
}
- private byte[] ShortToByte(Short in[]) {
+ private byte[] ShortToByte(Short in[])
+ {
int nelems = java.lang.reflect.Array.getLength(in);
short[] out = new short[nelems];
@@ -781,7 +608,8 @@ public class HDFArray {
return HDFNativeData.shortToByte(0, nelems, out);
}
- private Short[] ByteToShort(byte[] bin) {
+ private Short[] ByteToShort(byte[] bin)
+ {
short in[] = HDFNativeData.byteToShort(bin);
int nelems = java.lang.reflect.Array.getLength((Object) in);
Short[] out = new Short[nelems];
@@ -792,7 +620,8 @@ public class HDFArray {
return out;
}
- private Short[] ByteToShort(int start, int len, byte[] bin) {
+ private Short[] ByteToShort(int start, int len, byte[] bin)
+ {
short in[] = (short[]) HDFNativeData.byteToShort(start, len, bin);
int nelems = java.lang.reflect.Array.getLength((Object) in);
Short[] out = new Short[nelems];
@@ -803,7 +632,8 @@ public class HDFArray {
return out;
}
- private byte[] ByteObjToByte(Byte in[]) {
+ private byte[] ByteObjToByte(Byte in[])
+ {
int nelems = java.lang.reflect.Array.getLength((Object) in);
byte[] out = new byte[nelems];
@@ -813,7 +643,8 @@ public class HDFArray {
return out;
}
- private Byte[] ByteToByteObj(byte[] bin) {
+ private Byte[] ByteToByteObj(byte[] bin)
+ {
int nelems = java.lang.reflect.Array.getLength((Object) bin);
Byte[] out = new Byte[nelems];
@@ -823,7 +654,8 @@ public class HDFArray {
return out;
}
- private Byte[] ByteToByteObj(int start, int len, byte[] bin) {
+ private Byte[] ByteToByteObj(int start, int len, byte[] bin)
+ {
Byte[] out = new Byte[len];
for (int i = 0; i < len; i++) {
@@ -832,7 +664,8 @@ public class HDFArray {
return out;
}
- private byte[] FloatObjToByte(Float in[]) {
+ private byte[] FloatObjToByte(Float in[])
+ {
int nelems = java.lang.reflect.Array.getLength((Object) in);
float[] out = new float[nelems];
@@ -842,7 +675,8 @@ public class HDFArray {
return HDFNativeData.floatToByte(0, nelems, out);
}
- private Float[] ByteToFloatObj(byte[] bin) {
+ private Float[] ByteToFloatObj(byte[] bin)
+ {
float in[] = (float[]) HDFNativeData.byteToFloat(bin);
int nelems = java.lang.reflect.Array.getLength((Object) in);
Float[] out = new Float[nelems];
@@ -853,7 +687,8 @@ public class HDFArray {
return out;
}
- private Float[] ByteToFloatObj(int start, int len, byte[] bin) {
+ private Float[] ByteToFloatObj(int start, int len, byte[] bin)
+ {
float in[] = (float[]) HDFNativeData.byteToFloat(start, len, bin);
int nelems = java.lang.reflect.Array.getLength((Object) in);
Float[] out = new Float[nelems];
@@ -864,7 +699,8 @@ public class HDFArray {
return out;
}
- private byte[] DoubleObjToByte(Double in[]) {
+ private byte[] DoubleObjToByte(Double in[])
+ {
int nelems = java.lang.reflect.Array.getLength((Object) in);
double[] out = new double[nelems];
@@ -874,7 +710,8 @@ public class HDFArray {
return HDFNativeData.doubleToByte(0, nelems, out);
}
- private Double[] ByteToDoubleObj(byte[] bin) {
+ private Double[] ByteToDoubleObj(byte[] bin)
+ {
double in[] = (double[]) HDFNativeData.byteToDouble(bin);
int nelems = java.lang.reflect.Array.getLength((Object) in);
Double[] out = new Double[nelems];
@@ -885,7 +722,8 @@ public class HDFArray {
return out;
}
- private Double[] ByteToDoubleObj(int start, int len, byte[] bin) {
+ private Double[] ByteToDoubleObj(int start, int len, byte[] bin)
+ {
double in[] = (double[]) HDFNativeData.byteToDouble(start, len, bin);
int nelems = java.lang.reflect.Array.getLength((Object) in);
Double[] out = new Double[nelems];
@@ -896,7 +734,8 @@ public class HDFArray {
return out;
}
- private byte[] LongObjToByte(Long in[]) {
+ private byte[] LongObjToByte(Long in[])
+ {
int nelems = java.lang.reflect.Array.getLength((Object) in);
long[] out = new long[nelems];
@@ -906,7 +745,8 @@ public class HDFArray {
return HDFNativeData.longToByte(0, nelems, out);
}
- private Long[] ByteToLongObj(byte[] bin) {
+ private Long[] ByteToLongObj(byte[] bin)
+ {
long in[] = (long[]) HDFNativeData.byteToLong(bin);
int nelems = java.lang.reflect.Array.getLength((Object) in);
Long[] out = new Long[nelems];
@@ -917,7 +757,8 @@ public class HDFArray {
return out;
}
- private Long[] ByteToLongObj(int start, int len, byte[] bin) {
+ private Long[] ByteToLongObj(int start, int len, byte[] bin)
+ {
long in[] = (long[]) HDFNativeData.byteToLong(start, len, bin);
int nelems = java.lang.reflect.Array.getLength((Object) in);
Long[] out = new Long[nelems];
@@ -930,13 +771,11 @@ public class HDFArray {
}
/**
- * This private class is used by HDFArray to discover the shape and type of an
- * arbitrary array.
+ * This private class is used by HDFArray to discover the shape and type of an arbitrary array.
* <p>
* We use java.lang.reflection here.
*/
class ArrayDescriptor {
-
static String theType = "";
static Class theClass = null;
static int[] dimlen = null;
@@ -944,19 +783,19 @@ class ArrayDescriptor {
static int[] currentindex = null;
static int[] bytetoindex = null;
static int totalSize = 0;
+ static int totalElements = 0;
static Object[] objs = null;
static char NT = ' '; /* must be B,S,I,L,F,D, else error */
static int NTsize = 0;
static int dims = 0;
static String className;
- public ArrayDescriptor(Object anArray) throws HDF5Exception {
-
+ public ArrayDescriptor(Object anArray) throws HDF5Exception
+ {
Class tc = anArray.getClass();
if (tc.isArray() == false) {
/* exception: not an array */
- HDF5Exception ex = new HDF5JavaException(
- "ArrayDescriptor: not an array?: ");
+ HDF5Exception ex = new HDF5JavaException("ArrayDescriptor: not an array?: ");
throw (ex);
}
@@ -1028,16 +867,14 @@ class ArrayDescriptor {
NT = 'L';
className = "java.lang.String";
NTsize = 1;
- throw new HDF5JavaException(new String(
- "ArrayDesciptor: Warning: String array not fully supported yet"));
+ throw new HDF5JavaException(new String("ArrayDesciptor: Warning: String array not fully supported yet"));
}
else {
/*
* exception: not a numeric type
*/
- throw new HDF5JavaException(new String(
- "ArrayDesciptor: Error: array is not numeric (type is "
- + css + ") ?"));
+ throw new HDF5JavaException(
+ new String("ArrayDesciptor: Error: array is not numeric (type is " + css + ") ?"));
}
/* fill in the table */
@@ -1052,6 +889,7 @@ class ArrayDescriptor {
dimlen[0] = 1;
dimstart[0] = 0;
currentindex[0] = 0;
+ int elements = 1;
int i;
for (i = 1; i <= dims; i++) {
dimlen[i] = java.lang.reflect.Array.getLength((Object) o);
@@ -1059,7 +897,9 @@ class ArrayDescriptor {
objs[i] = o;
dimstart[i] = 0;
currentindex[i] = 0;
+ elements *= dimlen[i];
}
+ totalElements = elements;
int j;
int dd;
@@ -1078,20 +918,19 @@ class ArrayDescriptor {
/**
* Debug dump
*/
- public void dumpInfo() {
+ public void dumpInfo()
+ {
System.out.println("Type: " + theType);
System.out.println("Class: " + theClass);
System.out.println("NT: " + NT + " NTsize: " + NTsize);
System.out.println("Array has " + dims + " dimensions (" + totalSize
- + " bytes)");
+ + " bytes, " + totalElements + " elements)");
int i;
for (i = 0; i <= dims; i++) {
Class tc = objs[i].getClass();
String ss = tc.toString();
- System.out.println(i + ": start " + dimstart[i] + ": len "
- + dimlen[i] + " current " + currentindex[i]
- + " bytetoindex " + bytetoindex[i] + " object " + objs[i]
- + " otype " + ss);
+ System.out.println(i + ": start " + dimstart[i] + ": len " + dimlen[i] + " current " + currentindex[i]
+ + " bytetoindex " + bytetoindex[i] + " object " + objs[i] + " otype " + ss);
}
}
}
diff --git a/java/src/hdf/hdf5lib/callbacks/Callbacks.java b/java/src/hdf/hdf5lib/callbacks/Callbacks.java
index e2033fa..11fa465 100644
--- a/java/src/hdf/hdf5lib/callbacks/Callbacks.java
+++ b/java/src/hdf/hdf5lib/callbacks/Callbacks.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
diff --git a/java/src/hdf/hdf5lib/callbacks/H5A_iterate_cb.java b/java/src/hdf/hdf5lib/callbacks/H5A_iterate_cb.java
index da59567..6c68f36 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5A_iterate_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5A_iterate_cb.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -15,7 +14,28 @@ package hdf.hdf5lib.callbacks;
import hdf.hdf5lib.structs.H5A_info_t;
-//Information class for link callback(for H5Aiterate)
+/**
+ * Information class for link callback for H5Aiterate.
+ *
+ */
public interface H5A_iterate_cb extends Callbacks {
- int callback(long group, String name, H5A_info_t info, H5A_iterate_t op_data);
+ /**
+ * application callback for each attribute
+ *
+ * @param loc_id the ID for the group or dataset being iterated over
+ * @param name the name of the current attribute about the object
+ * @param info the attribute's "info" struct
+ * @param op_data the operator data passed in to H5Aiterate
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
+ int callback(long loc_id, String name, H5A_info_t info, H5A_iterate_t op_data);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java
index d229dd4..d612db3 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -13,6 +12,10 @@
package hdf.hdf5lib.callbacks;
+/**
+ * Data class for link callback for H5Aiterate.
+ *
+ */
public interface H5A_iterate_t {
/** public ArrayList iterdata = new ArrayList();
* Any derived interfaces must define the single public variable as above.
diff --git a/java/src/hdf/hdf5lib/callbacks/H5D_append_cb.java b/java/src/hdf/hdf5lib/callbacks/H5D_append_cb.java
index a163f11..cf7ada6 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5D_append_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5D_append_cb.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -13,7 +12,27 @@
package hdf.hdf5lib.callbacks;
-//Information class for link callback(for H5Pset/get_append_flush)
+/**
+ * Information class for link callback for H5Pset/get_append_flush.
+ *
+ */
public interface H5D_append_cb extends Callbacks {
+ /**
+ * application callback for each dataset access property list
+ *
+ * @param dataset_id the ID for the dataset being iterated over
+ * @param cur_dims the dimension sizes for determining boundary
+ * @param op_data the operator data passed in to H5Pset/get_append_flush
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
int callback(long dataset_id, long[] cur_dims, H5D_append_t op_data);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5D_append_t.java b/java/src/hdf/hdf5lib/callbacks/H5D_append_t.java
index 4df25de..7fdb454 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5D_append_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5D_append_t.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -13,6 +12,10 @@
package hdf.hdf5lib.callbacks;
+/**
+ * Data class for link callback for H5Dappend.
+ *
+ */
public interface H5D_append_t {
/** public ArrayList iterdata = new ArrayList();
* Any derived interfaces must define the single public variable as above.
diff --git a/java/src/hdf/hdf5lib/callbacks/H5D_iterate_cb.java b/java/src/hdf/hdf5lib/callbacks/H5D_iterate_cb.java
index 8f5b64e..54c12e3 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5D_iterate_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5D_iterate_cb.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -13,7 +12,29 @@
package hdf.hdf5lib.callbacks;
-//Information class for link callback(for H5Diterate)
+/**
+ * Information class for link callback for H5Diterate.
+ *
+ */
public interface H5D_iterate_cb extends Callbacks {
+ /**
+ * application callback for each dataset element
+ *
+ * @param elem the pointer to the element in memory containing the current point
+ * @param elem_type the datatype ID for the elements stored in elem
+ * @param ndim the number of dimensions for POINT array
+ * @param point the array containing the location of the element within the original dataspace
+ * @param op_data the operator data passed in to H5Diterate
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
int callback(byte[] elem, long elem_type, int ndim, long[] point, H5D_iterate_t op_data);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java
index 36194f9..305cf98 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -13,6 +12,10 @@
package hdf.hdf5lib.callbacks;
+/**
+ * Data class for link callback for H5Diterate.
+ *
+ */
public interface H5D_iterate_t {
/** public ArrayList iterdata = new ArrayList();
* Any derived interfaces must define the single public variable as above.
diff --git a/java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java b/java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java
index 5b888b8..5722195 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -15,7 +14,27 @@ package hdf.hdf5lib.callbacks;
import hdf.hdf5lib.structs.H5E_error2_t;
-//Information class for link callback(for H5Ewalk)
+/**
+ * Information class for link callback for H5Ewalk.
+ *
+ */
public interface H5E_walk_cb extends Callbacks {
+ /**
+ * application callback for each error stack element
+ *
+ * @param nidx the index of the current error stack element
+ * @param info the error stack "info" struct
+ * @param op_data the operator data passed in to H5Ewalk
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
int callback(int nidx, H5E_error2_t info, H5E_walk_t op_data);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java b/java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java
index 72b56d5..5bf0c8b 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -13,6 +12,10 @@
package hdf.hdf5lib.callbacks;
+/**
+ * Data class for link callback for H5Ewalk.
+ *
+ */
public interface H5E_walk_t {
/** public ArrayList iterdata = new ArrayList();
* Any derived interfaces must define the single public variable as above.
diff --git a/java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java b/java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java
index 0b20422..d89fd2a 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -13,6 +12,10 @@
package hdf.hdf5lib.callbacks;
+/**
+ * Data class for link callback for H5Lvisit/H5Lvisit_by_name.
+ *
+ */
public interface H5L_iterate_opdata_t {
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java
index 31bff6e..53635bf 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -15,7 +14,28 @@ package hdf.hdf5lib.callbacks;
import hdf.hdf5lib.structs.H5L_info_t;
-// Information class for link callback (for H5Lvisit/H5Lvisit_by_name).
+/**
+ * Information class for link callback for H5Lvisit/H5Lvisit_by_name.
+ *
+ */
public interface H5L_iterate_t extends Callbacks {
- int callback(long group, String name, H5L_info_t info, H5L_iterate_opdata_t op_data);
+ /**
+ * application callback for each group
+ *
+ * @param loc_id the ID for the group being iterated over
+ * @param name the name of the current link
+ * @param info the link's "info" struct
+ * @param op_data the operator data passed in to H5Literate
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
+ int callback(long loc_id, String name, H5L_info_t info, H5L_iterate_opdata_t op_data);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java b/java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java
index 6f2b3cc..fd643b4 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -13,6 +12,10 @@
package hdf.hdf5lib.callbacks;
+/**
+ * Data class for link callback for H5Ovisit/H5Ovisit_by_name.
+ *
+ */
public interface H5O_iterate_opdata_t {
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java
index 45d7746..ecf868c 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -15,7 +14,28 @@ package hdf.hdf5lib.callbacks;
import hdf.hdf5lib.structs.H5O_info_t;
-// Information class for link callback(for H5Ovisit/H5Ovisit_by_name)
+/**
+ * Information class for link callback for H5Ovisit/H5Ovisit_by_name.
+ *
+ */
public interface H5O_iterate_t extends Callbacks {
- int callback(long group, String name, H5O_info_t info, H5O_iterate_opdata_t op_data);
+ /**
+ * application callback for each group
+ *
+ * @param loc_id the ID for the group or dataset being iterated over
+ * @param name the name of the current object
+ * @param info the object's "info" struct
+ * @param op_data the operator data passed in to H5Oiterate
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
+ int callback(long loc_id, String name, H5O_info_t info, H5O_iterate_opdata_t op_data);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_cb.java
index d5c2474..0a09a94 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_cb.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -13,7 +12,26 @@
package hdf.hdf5lib.callbacks;
-//Information class for link callback(for H5Pcreate_class)
+/**
+ * Information class for link callback for H5Pcreate_class.
+ *
+ */
public interface H5P_cls_close_func_cb extends Callbacks {
+ /**
+ * application callback for each property list
+ *
+ * @param prop_id the ID for the property list class being iterated over
+ * @param close_data the function to call when a property list is closed
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
int callback(long prop_id, H5P_cls_close_func_t close_data);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java
index 918e05b..11e3a99 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -13,6 +12,10 @@
package hdf.hdf5lib.callbacks;
+/**
+ * Data class for link callback for H5Pcreate_class.
+ *
+ */
public interface H5P_cls_close_func_t {
/** public ArrayList iterdata = new ArrayList();
* Any derived interfaces must define the single public variable as above.
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_cb.java
index d01185a..53f86be 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_cb.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -13,7 +12,27 @@
package hdf.hdf5lib.callbacks;
-//Information class for link callback(for H5Pcreate_class)
+/**
+ * Information class for link callback for H5Pcreate_class
+ *
+ */
public interface H5P_cls_copy_func_cb extends Callbacks {
+ /**
+ * application callback for each property list
+ *
+ * @param new_prop_id the ID for the property list copy
+ * @param old_prop_id the ID for the property list class being copied
+ * @param copy_data the function to call when each property list in this class is copied
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
int callback(long new_prop_id, long old_prop_id, H5P_cls_copy_func_t copy_data);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java
index 0357959..78e5282 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -13,6 +12,10 @@
package hdf.hdf5lib.callbacks;
+/**
+ * Data class for link callback for H5Pcreate_class.
+ *
+ */
public interface H5P_cls_copy_func_t {
/** public ArrayList iterdata = new ArrayList();
* Any derived interfaces must define the single public variable as above.
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_cb.java
index 7eb633b..8f4e782 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_cb.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -13,7 +12,26 @@
package hdf.hdf5lib.callbacks;
-//Information class for link callback(for H5Pcreate_class)
+/**
+ * Information class for link callback for H5Pcreate_class.
+ *
+ */
public interface H5P_cls_create_func_cb extends Callbacks {
+ /**
+ * application callback for each property list
+ *
+ * @param prop_id the ID for the property list class being iterated over
+ * @param create_data the function to call when each property list in this class is created
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
int callback(long prop_id, H5P_cls_create_func_t create_data);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_t.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_t.java
index a217f18..d919d97 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_t.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -13,6 +12,10 @@
package hdf.hdf5lib.callbacks;
+/**
+ * Data class for link callback for H5Pcreate_class.
+ *
+ */
public interface H5P_cls_create_func_t {
/** public ArrayList iterdata = new ArrayList();
* Any derived interfaces must define the single public variable as above.
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_iterate_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_iterate_cb.java
index a133512..db98a67 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_iterate_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_iterate_cb.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -13,7 +12,27 @@
package hdf.hdf5lib.callbacks;
-//Information class for link callback(for H5Piterate)
+/**
+ * Information class for link callback for H5Piterate.
+ *
+ */
public interface H5P_iterate_cb extends Callbacks {
+ /**
+ * application callback for each property list
+ *
+ * @param plist the ID for the property list being iterated over
+ * @param name the name of the current property list
+ * @param op_data the operator data passed in to H5Piterate
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
int callback(long plist, String name, H5P_iterate_t op_data);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java
index 5c25187..0035619 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -13,6 +12,10 @@
package hdf.hdf5lib.callbacks;
+/**
+ * Data class for link callback for H5Piterate.
+ *
+ */
public interface H5P_iterate_t {
/** public ArrayList iterdata = new ArrayList();
* Any derived interfaces must define the single public variable as above.
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_close_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_close_func_cb.java
index d332ffc..1aa7ce4 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_close_func_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_close_func_cb.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -13,7 +12,27 @@
package hdf.hdf5lib.callbacks;
-//Information class for link callback(for H5Pregister2)
+/**
+ * Information class for link callback for H5Pregister2.
+ *
+ */
public interface H5P_prp_close_func_cb extends Callbacks {
+ /**
+ * application callback for each property list
+ *
+ * @param name the name of the property being closed
+ * @param size the size of the property value
+ * @param value the value of the property being closed
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
int callback(String name, long size, byte[] value);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_compare_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_compare_func_cb.java
index dfb2cd3..49cef7d 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_compare_func_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_compare_func_cb.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -13,7 +12,27 @@
package hdf.hdf5lib.callbacks;
-//Information class for link callback(for H5Pregister2)
+/**
+ * Information class for link callback for H5Pregister2.
+ *
+ */
public interface H5P_prp_compare_func_cb extends Callbacks {
+ /**
+ * application callback for each property list
+ *
+ * @param value1 the value of the first property being compared
+ * @param value2 the value of the second property being compared
+ * @param size the size of the property value
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
int callback(byte[] value1, byte[] value2, long size);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_copy_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_copy_func_cb.java
index 9a4456e..f4924ee 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_copy_func_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_copy_func_cb.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -13,7 +12,27 @@
package hdf.hdf5lib.callbacks;
-//Information class for link callback(for H5Pregister2)
+/**
+ * Information class for link callback for H5Pregister2.
+ *
+ */
public interface H5P_prp_copy_func_cb extends Callbacks {
+ /**
+ * application callback for each property list
+ *
+ * @param name the name of the property being copied
+ * @param size the size of the property value
+ * @param value the value of the property being copied
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
int callback(String name, long size, byte[] value);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_create_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_create_func_cb.java
index 53f4bdd..bce024b 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_create_func_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_create_func_cb.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -13,7 +12,27 @@
package hdf.hdf5lib.callbacks;
-//Information class for link callback(for H5Pregister2)
+/**
+ * Information class for link callback for H5Pregister2.
+ *
+ */
public interface H5P_prp_create_func_cb extends Callbacks {
+ /**
+ * application callback for each property list
+ *
+ * @param name the name of the property list being created
+ * @param size the size of the property value
+ * @param value the initial value for the property being created
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
int callback(String name, long size, byte[] value);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_delete_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_delete_func_cb.java
index 44e8ac3..8c5dccc 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_delete_func_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_delete_func_cb.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -13,7 +12,28 @@
package hdf.hdf5lib.callbacks;
-//Information class for link callback(for H5Pregister2)
+/**
+ * Information class for link callback for H5Pregister2.
+ *
+ */
public interface H5P_prp_delete_func_cb extends Callbacks {
+ /**
+ * application callback for each property list
+ *
+ * @param prop_id the ID of the property list the property is deleted from
+ * @param name the name of the property being deleted
+ * @param size the size of the property value
+ * @param value the value of the property being deleted
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
int callback(long prop_id, String name, long size, byte[] value);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_get_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_get_func_cb.java
index 5117bd2..0f3457f 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_get_func_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_get_func_cb.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -13,7 +12,28 @@
package hdf.hdf5lib.callbacks;
-//Information class for link callback(for H5Pregister2)
+/**
+ * Information class for link callback for H5Pregister2.
+ *
+ */
public interface H5P_prp_get_func_cb extends Callbacks {
+ /**
+ * application callback for each property list
+ *
+ * @param prop_id the ID for the property list being queried
+ * @param name the name of the property being queried
+ * @param size the size of the property value
+ * @param value the value being retrieved for the property
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
int callback(long prop_id, String name, long size, byte[] value);
}
diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_set_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_set_func_cb.java
index ef01fc9..a55ca3a 100644
--- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_set_func_cb.java
+++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_set_func_cb.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -13,7 +12,28 @@
package hdf.hdf5lib.callbacks;
-//Information class for link callback(for H5Pregister2)
+/**
+ * Information class for link callback for H5Pregister2.
+ *
+ */
public interface H5P_prp_set_func_cb extends Callbacks {
+ /**
+ * application callback for each property list
+ *
+ * @param prop_id the ID for the property list being modified
+ * @param name the name of the property being modified
+ * @param size the size of the property value
+ * @param value the value being set for the property
+ *
+ * @return operation status
+ * A. Zero causes the iterator to continue, returning zero when all
+ * attributes have been processed.
+ * B. Positive causes the iterator to immediately return that positive
+ * value, indicating short-circuit success. The iterator can be
+ * restarted at the next attribute.
+ * C. Negative causes the iterator to immediately return that value,
+ * indicating failure. The iterator can be restarted at the next
+ * attribute.
+ */
int callback(long prop_id, String name, long size, byte[] value);
}
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5Exception.java b/java/src/hdf/hdf5lib/exceptions/HDF5Exception.java
index 70e4160..0c23af1 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5Exception.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5Exception.java
@@ -31,6 +31,9 @@ package hdf.hdf5lib.exceptions;
*
*/
public class HDF5Exception extends RuntimeException {
+ /**
+ * the specified detail message of this exception
+ */
protected String detailMessage;
/**
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5AtomException.java b/java/src/hdf/hdf5lib/exceptions/HDF5IdException.java
index ee1b21f..04ee0bc 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5AtomException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5IdException.java
@@ -16,26 +16,26 @@ package hdf.hdf5lib.exceptions;
/**
* The class HDF5LibraryException returns errors raised by the HDF5 library.
* <p>
- * This sub-class represents HDF-5 major error code <b>H5E_ATOM</b>
+ * This sub-class represents HDF-5 major error code <b>H5E_ID</b>
*/
-public class HDF5AtomException extends HDF5LibraryException {
+public class HDF5IdException extends HDF5LibraryException {
/**
- * Constructs an <code>HDF5AtomException</code> with no specified detail
+ * Constructs an <code>HDF5IdException</code> with no specified detail
* message.
*/
- public HDF5AtomException() {
+ public HDF5IdException() {
super();
}
/**
- * Constructs an <code>HDF5AtomException</code> with the specified detail
+ * Constructs an <code>HDF5IdException</code> with the specified detail
* message.
*
* @param s
* the detail message.
*/
- public HDF5AtomException(String s) {
+ public HDF5IdException(String s) {
super(s);
}
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5LibraryException.java b/java/src/hdf/hdf5lib/exceptions/HDF5LibraryException.java
index 5192eb7..532355e 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5LibraryException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5LibraryException.java
@@ -30,7 +30,9 @@ import hdf.hdf5lib.HDF5Constants;
@SuppressWarnings("serial")
public class HDF5LibraryException extends HDF5Exception {
+ /** major error number of the first error on the HDF5 library error stack. */
private final long majorErrorNumber;
+ /** minor error number of the first error on the HDF5 library error stack. */
private final long minorErrorNumber;
/**
@@ -201,14 +203,14 @@ public class HDF5LibraryException extends HDF5Exception {
else if (err_code == HDF5Constants.H5E_CANTRELEASE) {
return "Can't release object";
}
- else if (err_code == HDF5Constants.H5E_BADATOM) {
- return "Can't find atom information";
+ else if (err_code == HDF5Constants.H5E_BADID) {
+ return "Can't find ID information";
}
else if (err_code == HDF5Constants.H5E_BADGROUP) {
return "Can't find group information";
}
else if (err_code == HDF5Constants.H5E_CANTREGISTER) {
- return "Can't register new atom";
+ return "Can't register new ID";
}
else if (err_code == HDF5Constants.H5E_CANTINC) {
return "Can't increment reference count";
diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5ReferenceException.java b/java/src/hdf/hdf5lib/exceptions/HDF5ReferenceException.java
index 9a5392b..0701244 100644
--- a/java/src/hdf/hdf5lib/exceptions/HDF5ReferenceException.java
+++ b/java/src/hdf/hdf5lib/exceptions/HDF5ReferenceException.java
@@ -13,6 +13,12 @@
package hdf.hdf5lib.exceptions;
+/**
+ * The class HDF5LibraryException returns errors raised by the HDF5 library.
+ * <p>
+ * This sub-class represents HDF-5 major error code <b>H5E_REFERENCE</b>
+ */
+
public class HDF5ReferenceException extends HDF5LibraryException {
/**
* Constructs an <code>HDF5ReferenceException</code> with no specified
diff --git a/java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java b/java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java
index 082cb56..cf84532 100644
--- a/java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -15,44 +14,276 @@ package hdf.hdf5lib.structs;
import java.io.Serializable;
-//Information struct for H5Pget_mdc_config/H5Pset_mdc_config
+/**
+ * Information struct for H5Pget_mdc_config/H5Pset_mdc_config
+ *
+ */
public class H5AC_cache_config_t implements Serializable{
private static final long serialVersionUID = -6748085696476149972L;
- // general configuration fields:
+ // general configuration fields
+ /**
+ * version: Integer field containing the version number of this version
+ * of the H5AC_cache_config_t structure. Any instance of
+ * H5AC_cache_config_t passed to the cache must have a known
+ * version number, or an error will be flagged.
+ */
public int version;
+ /**
+ * rpt_fcn_enabled: Boolean field used to enable and disable the default
+ * reporting function. This function is invoked every time the
+ * automatic cache resize code is run, and reports on its activities.
+ *
+ * This is a debugging function, and should normally be turned off.
+ */
public boolean rpt_fcn_enabled;
+ /**
+ * open_trace_file: Boolean field indicating whether the trace_file_name
+ * field should be used to open a trace file for the cache.
+ *
+ * *** DEPRECATED *** Use H5Fstart/stop logging functions instead
+ */
public boolean open_trace_file;
+ /**
+ * close_trace_file: Boolean field indicating whether the current trace
+ * file (if any) should be closed.
+ *
+ * *** DEPRECATED *** Use H5Fstart/stop logging functions instead
+ */
public boolean close_trace_file;
+ /**
+ * trace_file_name: Full path of the trace file to be opened if the
+ * open_trace_file field is TRUE.
+ *
+ * *** DEPRECATED *** Use H5Fstart/stop logging functions instead
+ */
public String trace_file_name;
+ /**
+ * evictions_enabled: Boolean field used to either report the current
+ * evictions enabled status of the cache, or to set the cache's
+ * evictions enabled status.
+ */
public boolean evictions_enabled;
+ /**
+ * set_initial_size: Boolean flag indicating whether the size of the
+ * initial size of the cache is to be set to the value given in
+ * the initial_size field. If set_initial_size is FALSE, the
+ * initial_size field is ignored.
+ */
public boolean set_initial_size;
+ /**
+ * initial_size: If enabled, this field contain the size the cache is
+ * to be set to upon receipt of this structure. Needless to say,
+ * initial_size must lie in the closed interval [min_size, max_size].
+ */
public long initial_size;
+ /**
+ * min_clean_fraction: double in the range 0 to 1 indicating the fraction
+ * of the cache that is to be kept clean. This field is only used
+ * in parallel mode. Typical values are 0.1 to 0.5.
+ */
public double min_clean_fraction;
+ /**
+ * max_size: Maximum size to which the cache can be adjusted. The
+ * supplied value must fall in the closed interval
+ * [MIN_MAX_CACHE_SIZE, MAX_MAX_CACHE_SIZE]. Also, max_size must
+ * be greater than or equal to min_size.
+ */
public long max_size;
+ /**
+ * min_size: Minimum size to which the cache can be adjusted. The
+ * supplied value must fall in the closed interval
+ * [H5C__MIN_MAX_CACHE_SIZE, H5C__MAX_MAX_CACHE_SIZE]. Also, min_size
+ * must be less than or equal to max_size.
+ */
public long min_size;
+ /**
+ * epoch_length: Number of accesses on the cache over which to collect
+ * hit rate stats before running the automatic cache resize code,
+ * if it is enabled.
+ */
public long epoch_length;
- // size increase control fields:
- public int incr_mode; // H5C_cache_incr_mode
+ // size increase control fields
+ /**
+ * incr_mode: Instance of the H5C_cache_incr_mode enumerated type whose
+ * value indicates how we determine whether the cache size should be
+ * increased. At present there are two possible values.
+ */
+ public int incr_mode;
+ /**
+ * lower_hr_threshold: Lower hit rate threshold. If the increment mode
+ * (incr_mode) is H5C_incr__threshold and the hit rate drops below the
+ * value supplied in this field in an epoch, increment the cache size by
+ * size_increment. Note that cache size may not be incremented above
+ * max_size, and that the increment may be further restricted by the
+ * max_increment field if it is enabled.
+ */
public double lower_hr_threshold;
+ /**
+ * increment: Double containing the multiplier used to derive the new
+ * cache size from the old if a cache size increment is triggered.
+ * The increment must be greater than 1.0, and should not exceed 2.0.
+ */
public double increment;
+ /**
+ * apply_max_increment: Boolean flag indicating whether the max_increment
+ * field should be used to limit the maximum cache size increment.
+ */
public boolean apply_max_increment;
+ /**
+ * max_increment: If enabled by the apply_max_increment field described
+ * above, this field contains the maximum number of bytes by which the
+ * cache size can be increased in a single re-size.
+ */
public long max_increment;
- public int flash_incr_mode; // H5C_cache_flash_incr_mode
+ /**
+ * flash_incr_mode: Instance of the H5C_cache_flash_incr_mode enumerated
+ * type whose value indicates whether and by which algorithm we should
+ * make flash increases in the size of the cache to accommodate insertion
+ * of large entries and large increases in the size of a single entry.
+ */
+ public int flash_incr_mode;
+ /**
+ * flash_multiple: Double containing the multiple described above in the
+ * H5C_flash_incr__add_space section of the discussion of the
+ * flash_incr_mode section. This field is ignored unless flash_incr_mode
+ * is H5C_flash_incr__add_space.
+ */
public double flash_multiple;
+ /**
+ * flash_threshold: Double containing the factor by which current max cache
+ * size is multiplied to obtain the size threshold for the add_space flash
+ * increment algorithm. The field is ignored unless flash_incr_mode is
+ * H5C_flash_incr__add_space.
+ */
public double flash_threshold;
- // size decrease control fields:
- public int decr_mode; // H5C_cache_decr_mode
+ // size decrease control fields
+ /**
+ * decr_mode: Instance of the H5C_cache_decr_mode enumerated type whose
+ * value indicates how we determine whether the cache size should be
+ * decreased. At present there are four possibilities.
+ */
+ public int decr_mode;
+ /**
+ * upper_hr_threshold: Upper hit rate threshold. The use of this field
+ * varies according to the current decr_mode.
+ */
public double upper_hr_threshold;
+ /**
+ * decrement: This field is only used when the decr_mode is
+ * H5C_decr__threshold.
+ */
public double decrement;
+ /**
+ * apply_max_decrement: Boolean flag used to determine whether decrements
+ * in cache size are to be limited by the max_decrement field.
+ */
public boolean apply_max_decrement;
+ /**
+ * max_decrement: Maximum number of bytes by which the cache size can be
+ * decreased in a single re-size. Note that decrements may also be
+ * restricted by the min_size of the cache, and (in age out modes) by
+ * the empty_reserve field.
+ */
public long max_decrement;
+ /**
+ * epochs_before_eviction: Integer field used in H5C_decr__age_out and
+ * H5C_decr__age_out_with_threshold decrement modes.
+ */
public int epochs_before_eviction;
+ /**
+ * apply_empty_reserve: Boolean field controlling whether the empty_reserve
+ * field is to be used in computing the new cache size when the
+ * decr_mode is H5C_decr__age_out or H5C_decr__age_out_with_threshold.
+ */
public boolean apply_empty_reserve;
+ /**
+ * empty_reserve: To avoid a constant racheting down of cache size by small
+ * amounts in the H5C_decr__age_out and H5C_decr__age_out_with_threshold
+ * modes, this field allows one to require that any cache size
+ * reductions leave the specified fraction of unused space in the cache.
+ */
public double empty_reserve;
- // parallel configuration fields:
+ // parallel configuration fields
+ /**
+ * dirty_bytes_threshold: Threshold of dirty byte creation used to
+ * synchronize updates between caches.
+ */
public long dirty_bytes_threshold;
+ /**
+ * metadata_write_strategy: Integer field containing a code indicating the
+ * desired metadata write strategy.
+ */
public int metadata_write_strategy;
+ /** H5AC_cache_config_t is a public structure intended for use in public APIs.
+ * At least in its initial incarnation, it is basically a copy of struct
+ * H5C_auto_size_ctl_t, minus the report_fcn field, and plus the
+ * dirty_bytes_threshold field.
+ *
+ * @param version: Integer field containing the version number of this version
+ * @param rpt_fcn_enabled: Boolean field used to enable and disable the default reporting function.
+ * @param open_trace_file: Boolean field indicating whether the trace_file_name
+ * field should be used to open a trace file for the cache.
+ * @param close_trace_file: Boolean field indicating whether the current trace
+ * file (if any) should be closed.
+ * @param trace_file_name: Full path of the trace file to be opened if the
+ * open_trace_file field is TRUE.
+ * @param evictions_enabled: Boolean field used to either report or set the current
+ * evictions enabled status of the cache.
+ * @param set_initial_size: Boolean flag indicating whether the size of the
+ * initial size of the cache is to be set to the value given in
+ * the initial_size field.
+ * @param initial_size: If enabled, this field contain the size the cache is
+ * to be set to upon receipt of this structure.
+ * @param min_clean_fraction: double in the range 0 to 1 indicating the fraction
+ * of the cache that is to be kept clean.
+ * @param max_size: Maximum size to which the cache can be adjusted.
+ * @param min_size: Minimum size to which the cache can be adjusted.
+ * @param epoch_length: Number of accesses on the cache over which to collect
+ * hit rate stats before running the automatic cache resize code.
+ * @param incr_mode: Instance of the H5C_cache_incr_mode enumerated type.
+ * @param lower_hr_threshold: Lower hit rate threshold.
+ * @param increment: Double containing the multiplier used to derive the new
+ * cache size from the old if a cache size increment is triggered.
+ * @param apply_max_increment: Boolean flag indicating whether the max_increment
+ * field should be used to limit the maximum cache size increment.
+ * @param max_increment: If enabled by the apply_max_increment field described
+ * above, this field contains the maximum number of bytes by which the
+ * cache size can be increased in a single re-size.
+ * @param flash_incr_mode: Instance of the H5C_cache_flash_incr_mode enumerated
+ * type whose value indicates whether and by which algorithm we should
+ * make flash increases in the size of the cache to accommodate insertion
+ * of large entries and large increases in the size of a single entry.
+ * @param flash_multiple: Double containing the multiple described above in the
+ * H5C_flash_incr__add_space section of the discussion of the
+ * flash_incr_mode section.
+ * @param flash_threshold: Double containing the factor by which current max cache
+ * size is multiplied to obtain the size threshold for the add_space flash
+ * increment algorithm.
+ * @param decr_mode: Instance of the H5C_cache_decr_mode enumerated type whose
+ * value indicates how we determine whether the cache size should be
+ * decreased.
+ * @param upper_hr_threshold: Upper hit rate threshold. The use of this field
+ * varies according to the current decr_mode.
+ * @param decrement: This field is only used when the decr_mode is
+ * H5C_decr__threshold.
+ * @param apply_max_decrement: Boolean flag used to determine whether decrements
+ * in cache size are to be limited by the max_decrement field.
+ * @param max_decrement: Maximum number of bytes by which the cache size can be
+ * decreased in a single re-size.
+ * @param epochs_before_eviction: Integer field used in H5C_decr__age_out and
+ * H5C_decr__age_out_with_threshold decrement modes.
+ * @param apply_empty_reserve: Boolean field controlling whether the empty_reserve
+ * field is to be used in computing the new cache size when the
+ * decr_mode is H5C_decr__age_out or H5C_decr__age_out_with_threshold.
+ * @param empty_reserve: To avoid a constant racheting down of cache size by small
+ * amounts in the H5C_decr__age_out and H5C_decr__age_out_with_threshold
+ * modes.
+ * @param dirty_bytes_threshold: Threshold of dirty byte creation used to
+ * synchronize updates between caches.
+ * @param metadata_write_strategy: Integer field containing a code indicating the
+ * desired metadata write strategy.
+ */
public H5AC_cache_config_t (int version, boolean rpt_fcn_enabled, boolean open_trace_file,
boolean close_trace_file, String trace_file_name, boolean evictions_enabled,
boolean set_initial_size, long initial_size, double min_clean_fraction, long max_size,
diff --git a/java/src/hdf/hdf5lib/structs/H5A_info_t.java b/java/src/hdf/hdf5lib/structs/H5A_info_t.java
index 334ac24..f2c10f0 100644
--- a/java/src/hdf/hdf5lib/structs/H5A_info_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5A_info_t.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -15,13 +14,20 @@ package hdf.hdf5lib.structs;
import java.io.Serializable;
-//Information struct for Attribute (For H5Aget_info/H5Aget_info_by_idx/H5Aget_info_by_name)
+/**
+ * Information struct for Attribute (For H5Aget_info/H5Aget_info_by_idx/H5Aget_info_by_name)
+ *
+ */
public class H5A_info_t implements Serializable{
private static final long serialVersionUID = 2791443594041667613L;
- public boolean corder_valid; // Indicate if creation order is valid
- public long corder; // Creation order of attribute
- public int cset; // Character set of attribute name
- public long data_size; // Size of raw data
+ /** Indicate if creation order is valid */
+ public boolean corder_valid;
+ /** Creation order of attribute */
+ public long corder;
+ /** Character set of attribute name */
+ public int cset;
+ /** Size of raw data */
+ public long data_size;
H5A_info_t(boolean corder_valid, long corder, int cset, long data_size) {
this.corder_valid = corder_valid;
diff --git a/java/src/hdf/hdf5lib/structs/H5E_error2_t.java b/java/src/hdf/hdf5lib/structs/H5E_error2_t.java
index f0a0158..5981fc7 100644
--- a/java/src/hdf/hdf5lib/structs/H5E_error2_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5E_error2_t.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -15,17 +14,26 @@ package hdf.hdf5lib.structs;
import java.io.Serializable;
-//Information struct for Attribute (For H5Ewalk)
+/**
+ * Information struct for Attribute (For H5Ewalk)
+ *
+ */
public class H5E_error2_t implements Serializable{
private static final long serialVersionUID = 279144359041667613L;
-
- public long cls_id; //class ID
- public long maj_num; //major error ID
- public long min_num; //minor error number
- public int line; //line in file where error occurs
- public String func_name; //function in which error occurred
- public String file_name; //file in which error occurred
- public String desc; //optional supplied description
+ /** class ID */
+ public long cls_id;
+ /** major error ID */
+ public long maj_num;
+ /** minor error number */
+ public long min_num;
+ /** line in file where error occurs */
+ public int line;
+ /** function in which error occurred */
+ public String func_name;
+ /** file in which error occurred */
+ public String file_name;
+ /** optional supplied description */
+ public String desc;
H5E_error2_t(long cls_id, long maj_num, long min_num, int line, String func_name, String file_name, String desc) {
this.cls_id = cls_id;
diff --git a/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java b/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java
index 9fcff2e..5da4abd 100644
--- a/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java
@@ -16,7 +16,7 @@ package hdf.hdf5lib.structs;
import java.io.Serializable;
-/*
+/**
* Java representation of the HDFS VFD file access property list (fapl)
* structure.
*
@@ -26,15 +26,31 @@ import java.io.Serializable;
public class H5FD_hdfs_fapl_t implements Serializable {
private static final long serialVersionUID = 2072473407027648309L;
+ /** Version number of the H5FD_hdfs_fapl_t structure. */
private int version;
+ /** Name of "Name Node" to access as the HDFS server. */
private String namenode_name;
+ /** Port number to use to connect with Name Node. */
private int namenode_port;
+ /** Username to use when accessing file. */
private String user_name;
+ /** Path to the location of the Kerberos authentication cache. */
private String kerberos_ticket_cache;
+ /** Size (in bytes) of the file read stream buffer. */
private int stream_buffer_size;
- /*
+ /**
* Create a fapl_t structure with the specified components.
+ * @param namenode_name
+ * Name of "Name Node" to access as the HDFS server.
+ * @param namenode_port
+ * Port number to use to connect with Name Node.
+ * @param user_name
+ * Username to use when accessing file.
+ * @param kerberos_ticket_cache
+ * Path to the location of the Kerberos authentication cache.
+ * @param stream_buffer_size
+ * Size (in bytes) of the file read stream buffer.
*/
public H5FD_hdfs_fapl_t(
String namenode_name,
diff --git a/java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java b/java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java
index a899e10..39f5424 100644
--- a/java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java
@@ -16,7 +16,7 @@ package hdf.hdf5lib.structs;
import java.io.Serializable;
-/*
+/**
* Java representation of the ROS3 VFD file access property list (fapl)
* structure.
*
@@ -46,10 +46,15 @@ import java.io.Serializable;
public class H5FD_ros3_fapl_t implements Serializable {
private static final long serialVersionUID = 8985533001471224030L;
+ /** Version number of the H5FD_ros3_fapl_t structure */
private int version;
+ /** Flag TRUE or FALSE whether or not requests are to be authenticated with the AWS4 algorithm. */
private boolean authenticate;
+ /** region "aws region" for authenticating request */
private String aws_region;
+ /** id "secret id" or "access id" for authenticating request */
private String secret_id;
+ /** key "secret key" or "access key" for authenticating request */
private String secret_key;
/**
diff --git a/java/src/hdf/hdf5lib/structs/H5F_info2_t.java b/java/src/hdf/hdf5lib/structs/H5F_info2_t.java
index 6f5f595..f951bb4 100644
--- a/java/src/hdf/hdf5lib/structs/H5F_info2_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5F_info2_t.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -15,19 +14,43 @@ package hdf.hdf5lib.structs;
import java.io.Serializable;
-//Information struct for object (for H5Fget_info)
+/**
+ * Information struct for object (for H5Fget_info)
+ *
+ */
public class H5F_info2_t implements Serializable{
private static final long serialVersionUID = 4691681162544054518L;
- public int super_version; // Superblock version #
- public long super_size; // Superblock size
- public long super_ext_size; // Superblock extension size
- public int free_version; // Version # of file free space management
- public long free_meta_size; // Free space manager metadata size
- public long free_tot_space; // Amount of free space in the file
- public int sohm_version; // Version # of shared object header info
- public long sohm_hdr_size; // Shared object header message header size
- public H5_ih_info_t sohm_msgs_info; // Shared object header message index & heap size
+ /** Superblock version number */
+ public int super_version;
+ /** Superblock size */
+ public long super_size;
+ /** Superblock extension size */
+ public long super_ext_size;
+ /** Version number of file free space management */
+ public int free_version;
+ /** Free space manager metadata size */
+ public long free_meta_size;
+ /** Amount of free space in the file */
+ public long free_tot_space;
+ /** Version number of shared object header info */
+ public int sohm_version;
+ /** Shared object header message header size */
+ public long sohm_hdr_size;
+ /** Shared object header message index and heap size */
+ public H5_ih_info_t sohm_msgs_info;
+ /**
+ * Constructor fot current "global" information about file
+ * @param super_version: Superblock version number
+ * @param super_size: Superblock size
+ * @param super_ext_size: Superblock extension size
+ * @param free_version: Version number of file free space management
+ * @param free_meta_size: Free space manager metadata size
+ * @param free_tot_space: Amount of free space in the file
+ * @param sohm_version: Version number of shared object header info
+ * @param sohm_hdr_size: Shared object header message header size
+ * @param sohm_msgs_info: Shared object header message index and heap size
+ */
public H5F_info2_t (int super_version, long super_size, long super_ext_size,
int free_version, long free_meta_size, long free_tot_space,
int sohm_version, long sohm_hdr_size, H5_ih_info_t sohm_msgs_info)
diff --git a/java/src/hdf/hdf5lib/structs/H5G_info_t.java b/java/src/hdf/hdf5lib/structs/H5G_info_t.java
index e9f0aac..e79f859 100644
--- a/java/src/hdf/hdf5lib/structs/H5G_info_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5G_info_t.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -15,11 +14,18 @@ package hdf.hdf5lib.structs;
import java.io.Serializable;
-//Information struct for group (for H5Gget_info/H5Gget_info_by_name/H5Gget_info_by_idx)
+/**
+ * Information struct for group (for H5Gget_info/H5Gget_info_by_name/H5Gget_info_by_idx)
+ *
+ */
public class H5G_info_t implements Serializable{
private static final long serialVersionUID = -3746463015312132912L;
- public int storage_type; // Type of storage for links in group
- public long nlinks; // Number of links in group
- public long max_corder; // Current max. creation order value for group
- public boolean mounted; // Whether group has a file mounted on it
+ /** Type of storage for links in group */
+ public int storage_type;
+ /** Number of links in group */
+ public long nlinks;
+ /** Current max. creation order value for group */
+ public long max_corder;
+ /** Whether group has a file mounted on it */
+ public boolean mounted;
}
diff --git a/java/src/hdf/hdf5lib/structs/H5L_info_t.java b/java/src/hdf/hdf5lib/structs/H5L_info_t.java
index 4a1545b..a3011c0 100644
--- a/java/src/hdf/hdf5lib/structs/H5L_info_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5L_info_t.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -17,17 +16,26 @@ import java.io.Serializable;
import hdf.hdf5lib.HDF5Constants;
-// Information struct for link (for H5Lget_info/H5Lget_info_by_idx)
+/**
+ * Information struct for link (for H5Lget_info/H5Lget_info_by_idx)
+ *
+ */
public class H5L_info_t implements Serializable {
private static final long serialVersionUID = -4754320605310155033L;
+ /** Type of link */
public int type;
+ /** Indicate if creation order is valid */
public boolean corder_valid;
+ /** Creation order */
public long corder;
+ /** Character set of link name */
public int cset;
+ /** Character set of link name */
public H5O_token_t token;
+ /** Size of a soft link or user-defined link value */
public long val_size;
- // Constructor for using object token portion of C union
+ /** Constructor for using object token portion of C union */
H5L_info_t (int type, boolean corder_valid, long corder,
int cset, H5O_token_t token)
{
@@ -39,7 +47,7 @@ public class H5L_info_t implements Serializable {
this.val_size = -1;
}
- // Constructor for using val_size portion of C union
+ /** Constructor for using val_size portion of C union */
H5L_info_t (int type, boolean corder_valid, long corder,
int cset, long val_size)
{
diff --git a/java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java b/java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java
index 596337d..2475dd9 100644
--- a/java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -15,19 +14,32 @@ package hdf.hdf5lib.structs;
import java.io.Serializable;
-// Information struct for object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx)
+/**
+ * Information struct for object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx)
+ *
+ */
public class H5O_hdr_info_t implements Serializable {
private static final long serialVersionUID = 7883826382952577189L;
- public int version; /* Version number of header format in file */
- public int nmesgs; /* Number of object header messages */
- public int nchunks; /* Number of object header chunks */
- public int flags; /* Object header status flags */
- public long space_total; /* Total space for storing object header in file */
- public long space_meta; /* Space within header for object header metadata information */
- public long space_mesg; /* Space within header for actual message information */
- public long space_free; /* Free space within object header */
- public long mesg_present; /* Flags to indicate presence of message type in header */
- public long mesg_shared; /* Flags to indicate message type is shared in header */
+ /** Version number of header format in file */
+ public int version;
+ /** Number of object header messages */
+ public int nmesgs;
+ /** Number of object header chunks */
+ public int nchunks;
+ /** Object header status flags */
+ public int flags;
+ /** Total space for storing object header in file */
+ public long space_total;
+ /** Space within header for object header metadata information */
+ public long space_meta;
+ /** Space within header for actual message information */
+ public long space_mesg;
+ /** Free space within object header */
+ public long space_free;
+ /** Flags to indicate presence of message type in header */
+ public long mesg_present;
+ /** Flags to indicate message type is shared in header */
+ public long mesg_shared;
H5O_hdr_info_t (int version, int nmesgs, int nchunks, int flags,
long space_total, long space_meta, long space_mesg, long space_free,
@@ -56,25 +68,25 @@ public class H5O_hdr_info_t implements Serializable {
H5O_hdr_info_t info = (H5O_hdr_info_t) o;
if (this.version != info.version)
- return false;
+ return false;
if (this.nmesgs != info.nmesgs)
- return false;
+ return false;
if (this.nchunks != info.nchunks)
- return false;
+ return false;
if (this.flags != info.flags)
- return false;
+ return false;
if (this.space_total != info.space_total)
- return false;
+ return false;
if (this.space_meta != info.space_meta)
- return false;
+ return false;
if (this.space_mesg != info.space_mesg)
- return false;
+ return false;
if (this.space_free != info.space_free)
- return false;
+ return false;
if (this.mesg_present != info.mesg_present)
- return false;
+ return false;
if (this.mesg_shared != info.mesg_shared)
- return false;
+ return false;
return true;
}
diff --git a/java/src/hdf/hdf5lib/structs/H5O_info_t.java b/java/src/hdf/hdf5lib/structs/H5O_info_t.java
index 7bf1336..d2208d2 100644
--- a/java/src/hdf/hdf5lib/structs/H5O_info_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5O_info_t.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -15,19 +14,43 @@ package hdf.hdf5lib.structs;
import java.io.Serializable;
-// Information struct for object (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx)
+/**
+ * Information struct for object (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx)
+ *
+ */
public class H5O_info_t implements Serializable {
private static final long serialVersionUID = 4691681163544054518L;
- public long fileno; /* File number that object is located in */
- public H5O_token_t token; /* Object token in file */
- public int type; /* Basic object type (group, dataset, etc.) */
- public int rc; /* Reference count of object */
- public long atime; /* Access time */
- public long mtime; /* Modification time */
- public long ctime; /* Change time */
- public long btime; /* Birth time */
- public long num_attrs; /* # of attributes attached to object */
+ /** File number that object is located in */
+ public long fileno;
+ /** Object token in file */
+ public H5O_token_t token;
+ /** Basic object type (group, dataset, etc.) */
+ public int type;
+ /** Reference count of object */
+ public int rc;
+ /** Access time */
+ public long atime;
+ /** Modification time */
+ public long mtime;
+ /** Change time */
+ public long ctime;
+ /** Birth time */
+ public long btime;
+ /** Number of attributes attached to object */
+ public long num_attrs;
+ /** Constructor for data model information struct for objects
+ *
+ * @param fileno: File number that object is located in
+ * @param token: Object token in file
+ * @param type: Basic object type
+ * @param rc: Reference count of object
+ * @param atime: Access time
+ * @param mtime: Modification time
+ * @param ctime: Change time
+ * @param btime: Birth time
+ * @param num_attrs: Number of attributes attached to object
+ */
public H5O_info_t (long fileno, H5O_token_t token, int type,
int rc, long atime, long mtime, long ctime, long btime, long num_attrs)
{
diff --git a/java/src/hdf/hdf5lib/structs/H5O_native_info_t.java b/java/src/hdf/hdf5lib/structs/H5O_native_info_t.java
index f859ca4..70e5231 100644
--- a/java/src/hdf/hdf5lib/structs/H5O_native_info_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5O_native_info_t.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -15,15 +14,20 @@ package hdf.hdf5lib.structs;
import java.io.Serializable;
-// Information struct for native HDF5 object info, such as object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx).
+/**
+ * Information struct for native HDF5 object info, such as object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx).
+ *
+ */
public class H5O_native_info_t implements Serializable {
private static final long serialVersionUID = 7883826382952577189L;
-
- public H5O_hdr_info_t hdr_info; /* Object header information */
+ /** Object header information */
+ public H5O_hdr_info_t hdr_info;
/* Extra metadata storage for obj & attributes */
- public H5_ih_info_t obj_info; /* v1/v2 B-tree & local/fractal heap for groups, B-tree for chunked datasets */
- public H5_ih_info_t attr_info; /* v2 B-tree & heap for attributes */
+ /** v1/v2 B-tree and local/fractal heap for groups, B-tree for chunked datasets */
+ public H5_ih_info_t obj_info;
+ /** v2 B-tree and heap for attributes */
+ public H5_ih_info_t attr_info;
H5O_native_info_t (H5O_hdr_info_t oheader_info, H5_ih_info_t obj_info, H5_ih_info_t attr_info)
{
@@ -45,7 +49,7 @@ public class H5O_native_info_t implements Serializable {
if (!this.hdr_info.equals(info.hdr_info)
|| !this.obj_info.equals(info.obj_info)
|| !this.attr_info.equals(info.attr_info))
- return false;
+ return false;
return true;
}
diff --git a/java/src/hdf/hdf5lib/structs/H5O_token_t.java b/java/src/hdf/hdf5lib/structs/H5O_token_t.java
index 24612bb..f0bb978 100644
--- a/java/src/hdf/hdf5lib/structs/H5O_token_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5O_token_t.java
@@ -17,15 +17,28 @@ import java.util.Arrays;
import hdf.hdf5lib.HDF5Constants;
-// Object token, which is a unique and permanent identifier, for an HDF5 object within a container.
+/**
+ * Object token, which is a unique and permanent identifier, for an HDF5 object within a container.
+ *
+ */
public class H5O_token_t implements Serializable {
private static final long serialVersionUID = -4754320605310155032L;
+ /**
+ * Tokens are unique and permanent identifiers that are
+ * used to reference HDF5 objects in a container.
+ * Use basic byte array to store the dat
+ */
public byte[] data;
H5O_token_t (byte[] data) {
this.data = data;
}
+ /**
+ * Check if token data is undefined
+ *
+ * @return true if token data is undefined
+ */
public boolean isUndefined() {
return this.equals(HDF5Constants.H5O_TOKEN_UNDEF);
}
diff --git a/java/src/hdf/hdf5lib/structs/H5_ih_info_t.java b/java/src/hdf/hdf5lib/structs/H5_ih_info_t.java
index db89c9a..0c6111b 100644
--- a/java/src/hdf/hdf5lib/structs/H5_ih_info_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5_ih_info_t.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -15,10 +14,15 @@ package hdf.hdf5lib.structs;
import java.io.Serializable;
-//Information struct for group (for H5Gget_info/H5Gget_info_by_name/H5Gget_info_by_idx)
+/**
+ * Information struct for group (for H5Gget_info/H5Gget_info_by_name/H5Gget_info_by_idx)
+ *
+ */
public class H5_ih_info_t implements Serializable {
private static final long serialVersionUID = -142238015615462707L;
- public long index_size; /* btree and/or list */
+ /** btree and/or list size of index */
+ public long index_size;
+ /** btree and/or list size of hp */
public long heap_size;
H5_ih_info_t (long index_size, long heap_size)
@@ -38,9 +42,9 @@ public class H5_ih_info_t implements Serializable {
H5_ih_info_t info = (H5_ih_info_t) o;
if (this.index_size != info.index_size)
- return false;
+ return false;
if (this.heap_size != info.heap_size)
- return false;
+ return false;
return true;
}