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-rw-r--r--java/src/hdf/hdf5lib/CMakeLists.txt13
-rw-r--r--java/src/hdf/hdf5lib/H5.java12
-rw-r--r--java/src/hdf/hdf5lib/HDF5GroupInfo.java188
-rw-r--r--java/src/hdf/hdf5lib/HDFArray.java2
-rw-r--r--java/src/hdf/hdf5lib/callbacks/package-info.java1
-rw-r--r--java/src/hdf/hdf5lib/exceptions/package-info.java3
-rw-r--r--java/src/hdf/hdf5lib/package-info.java1
-rw-r--r--java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java1
-rw-r--r--java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java1
-rw-r--r--java/src/hdf/hdf5lib/structs/package-info.java1
10 files changed, 9 insertions, 214 deletions
diff --git a/java/src/hdf/hdf5lib/CMakeLists.txt b/java/src/hdf/hdf5lib/CMakeLists.txt
index 1afc8b0..1738bcf 100644
--- a/java/src/hdf/hdf5lib/CMakeLists.txt
+++ b/java/src/hdf/hdf5lib/CMakeLists.txt
@@ -101,7 +101,6 @@ set (HDF5_JAVADOC_HDF_HDF5_STRUCTS_SOURCES
set (HDF5_JAVA_HDF_HDF5_SOURCES
HDFArray.java
HDF5Constants.java
- HDF5GroupInfo.java
HDFNativeData.java
H5.java
)
@@ -135,15 +134,3 @@ set_target_properties (${HDF5_JAVA_HDF5_LIB_TARGET} PROPERTIES FOLDER libraries/
if (HDF5_ENABLE_FORMATTERS)
clang_format (HDF5_JAVA_SRC_FORMAT ${HDF5_JAVA_HDF_HDF5_CALLBACKS_SOURCES} ${HDF5_JAVA_HDF_HDF5_EXCEPTIONS_SOURCES} ${HDF5_JAVA_HDF_HDF5_STRUCTS_SOURCES} ${HDF5_JAVA_HDF_HDF5_SOURCES})
endif ()
-
-create_javadoc(hdf5_java_doc
- FILES ${HDF5_JAVADOC_HDF_HDF5_CALLBACKS_SOURCES} ${HDF5_JAVADOC_HDF_HDF5_EXCEPTIONS_SOURCES} ${HDF5_JAVADOC_HDF_HDF5_STRUCTS_SOURCES} ${HDF5_JAVADOC_HDF_HDF5_SOURCES}
- OVERVIEW ${HDF5_JAVA_HDF5_SRC_DIR}/overview.html
- CLASSPATH ${CMAKE_JAVA_INCLUDE_PATH}
- WINDOWTITLE "HDF5 Java"
- DOCTITLE "<h1>HDF5 Java Wrapper</h1>"
- INSTALLPATH ${HDF5_INSTALL_DOC_DIR}
- AUTHOR TRUE
- USE TRUE
- VERSION TRUE
-)
diff --git a/java/src/hdf/hdf5lib/H5.java b/java/src/hdf/hdf5lib/H5.java
index bb42106..90c4575 100644
--- a/java/src/hdf/hdf5lib/H5.java
+++ b/java/src/hdf/hdf5lib/H5.java
@@ -228,7 +228,7 @@ import hdf.hdf5lib.structs.H5O_token_t;
* which prints out the HDF5 error stack, as described in the HDF5 C API <i><b>@ref H5Eprint()</b>.</i> This
* may be used by Java exception handlers to print out the HDF5 error stack. <hr>
*
- * @version HDF5 1.10.10 <br />
+ * @version HDF5 1.12.3 <br />
* <b>See also: </b>
* @ref HDFARRAY hdf.hdf5lib.HDFArray<br />
* @ref HDF5CONST hdf.hdf5lib.HDF5Constants<br />
@@ -5082,8 +5082,8 @@ public class H5 implements java.io.Serializable {
*
* @param name
* IN: File name to check.
- * @param file_id
- * IN: File identifier for a currently-open HDF5 file
+ * @param fapl_id
+ * IN: File access property list identifier
*
* @return true if file is accessible, false if not.
*
@@ -5092,7 +5092,7 @@ public class H5 implements java.io.Serializable {
* @exception NullPointerException
* name is null.
**/
- public synchronized static native boolean H5Fis_accessible(String name, long file_id)
+ public synchronized static native boolean H5Fis_accessible(String name, long fapl_id)
throws HDF5LibraryException, NullPointerException;
/**
@@ -13773,7 +13773,7 @@ public class H5 implements java.io.Serializable {
/**
* @ingroup JH5T
*
- * H5Tcreate creates a new dataype of the specified class with the specified number of bytes.
+ * H5Tcreate creates a new datatype of the specified class with the specified number of bytes.
*
* @param tclass
* IN: Class of datatype to create.
@@ -15228,7 +15228,7 @@ public class H5 implements java.io.Serializable {
/**
* @ingroup JH5T
*
- * H5Tvlen_create creates a new variable-length (VL) dataype.
+ * H5Tvlen_create creates a new variable-length (VL) datatype.
*
* @param base_id
* IN: Identifier of parent datatype.
diff --git a/java/src/hdf/hdf5lib/HDF5GroupInfo.java b/java/src/hdf/hdf5lib/HDF5GroupInfo.java
deleted file mode 100644
index 50c7db0..0000000
--- a/java/src/hdf/hdf5lib/HDF5GroupInfo.java
+++ /dev/null
@@ -1,188 +0,0 @@
-/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
- * Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
- * All rights reserved. *
- * *
- * This file is part of HDF5. The full HDF5 copyright notice, including *
- * terms governing use, modification, and redistribution, is contained in *
- * the COPYING file, which can be found at the root of the source code *
- * distribution tree, or in https://www.hdfgroup.org/licenses. *
- * If you do not have access to either file, you may request a copy from *
- * help@hdfgroup.org. *
- * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-
-package hdf.hdf5lib;
-
-/**
- * <p>
- * This class is a container for the information reported about an HDF5 Object
- * from the H5Gget_obj_info() method.
- * <p>
- * The fileno and objno fields contain four values which uniquely identify an
- * object among those HDF5 files which are open: if all four values are the same
- * between two objects, then the two objects are the same (provided both files
- * are still open). The nlink field is the number of hard links to the object or
- * zero when information is being returned about a symbolic link (symbolic links
- * do not have hard links but all other objects always have at least one). The
- * type field contains the type of the object, one of H5G_GROUP, H5G_DATASET, or
- * H5G_LINK. The mtime field contains the modification time. If information is
- * being returned about a symbolic link then linklen will be the length of the
- * link value (the name of the pointed-to object with the null terminator);
- * otherwise linklen will be zero. Other fields may be added to this structure
- * in the future.
- *
- * @deprecated Not for public use. It is not used by the library.
- * This class assumes that an object can contain four values which uniquely identify an
- * object among those HDF5 files which are open. This is no longer valid in future
- * HDF5 releases.
- */
-
-@Deprecated
-public class HDF5GroupInfo {
- long[] fileno;
- long[] objno;
- int nlink;
- int type;
- long mtime;
- int linklen;
-
- /**
- * Container for the information reported about an HDF5 Object
- * from the H5Gget_obj_info() method
- */
- public HDF5GroupInfo()
- {
- fileno = new long[2];
- objno = new long[2];
- nlink = -1;
- type = -1;
- mtime = 0;
- linklen = 0;
- }
-
- /**
- * Sets the HDF5 group information. Used by the JHI5.
- *
- * @param fn
- * File id number
- * @param on
- * Object id number
- * @param nl
- * Number of links
- * @param t
- * Type of the object
- * @param mt
- * Modification time
- * @param len
- * Length of link
- **/
- public void setGroupInfo(long[] fn, long[] on, int nl, int t, long mt, int len)
- {
- fileno = fn;
- objno = on;
- nlink = nl;
- type = t;
- mtime = mt;
- linklen = len;
- }
-
- /** Resets all the group information to defaults. */
- public void reset()
- {
- fileno[0] = 0;
- fileno[1] = 0;
- objno[0] = 0;
- objno[1] = 0;
- nlink = -1;
- type = -1;
- mtime = 0;
- linklen = 0;
- }
-
- /**
- * fileno accessors
- * @return the file number if successful
- */
- public long[] getFileno() { return fileno; }
-
- /**
- * accessors
- * @return the object number if successful
- */
- public long[] getObjno() { return objno; }
-
- /**
- * accessors
- * @return type of group if successful
- */
- public int getType() { return type; }
-
- /**
- * accessors
- * @return the number of links in the group if successful
- */
- public int getNlink() { return nlink; }
-
- /**
- * accessors
- * @return the modified time value if successful
- */
- public long getMtime() { return mtime; }
-
- /**
- * accessors
- * @return a length of link name if successful
- */
- public int getLinklen() { return linklen; }
-
- /**
- * The fileno and objno fields contain four values which uniquely identify
- * an object among those HDF5 files.
- */
- @Override
- public boolean equals(Object obj)
- {
- if (!(obj instanceof HDF5GroupInfo)) {
- return false;
- }
-
- HDF5GroupInfo target = (HDF5GroupInfo)obj;
- if ((fileno[0] == target.fileno[0]) && (fileno[1] == target.fileno[1]) &&
- (objno[0] == target.objno[0]) && (objno[1] == target.objno[1])) {
- return true;
- }
- else {
- return false;
- }
- }
-
- /**
- * Returns the object id.
- *
- * @return the object id
- */
- public long getOID() { return objno[0]; }
-
- /**
- * /** Converts this object to a String representation.
- *
- * @return a string representation of this object
- */
- @Override
- public String toString()
- {
- String fileStr = "fileno=null";
- String objStr = "objno=null";
-
- if (fileno != null) {
- fileStr = "fileno[0]=" + fileno[0] + ",fileno[1]=" + fileno[1];
- }
-
- if (objno != null) {
- objStr = "objno[0]=" + objno[0] + ",objno[1]=" + objno[1];
- }
-
- return getClass().getName() + "[" + fileStr + "," + objStr + ",type=" + type + ",nlink=" + nlink +
- ",mtime=" + mtime + ",linklen=" + linklen + "]";
- }
-}
diff --git a/java/src/hdf/hdf5lib/HDFArray.java b/java/src/hdf/hdf5lib/HDFArray.java
index 28d5117..637a896 100644
--- a/java/src/hdf/hdf5lib/HDFArray.java
+++ b/java/src/hdf/hdf5lib/HDFArray.java
@@ -455,6 +455,7 @@ public class HDFArray {
new HDF5JavaException("HDFArray: unsupported Object type: " + ArrayDescriptor.NT);
throw(ex);
}
+ break;
} // end of statement for arrays of boxed objects
default:
HDF5JavaException ex =
@@ -527,6 +528,7 @@ public class HDFArray {
new HDF5JavaException("HDFArray: unsupported Object type: " + ArrayDescriptor.NT);
throw(ex);
}
+ break;
} // end of statement for arrays of boxed numerics
} // end of switch statement for arrays of primitives
diff --git a/java/src/hdf/hdf5lib/callbacks/package-info.java b/java/src/hdf/hdf5lib/callbacks/package-info.java
index 5ef3fab..bf7bf3c 100644
--- a/java/src/hdf/hdf5lib/callbacks/package-info.java
+++ b/java/src/hdf/hdf5lib/callbacks/package-info.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
diff --git a/java/src/hdf/hdf5lib/exceptions/package-info.java b/java/src/hdf/hdf5lib/exceptions/package-info.java
index 2ac7806..784e57d 100644
--- a/java/src/hdf/hdf5lib/exceptions/package-info.java
+++ b/java/src/hdf/hdf5lib/exceptions/package-info.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
@@ -29,4 +28,4 @@
* error code returned by the HDF5 library.
*
*/
-package hdf.hdf5lib.exceptions; \ No newline at end of file
+package hdf.hdf5lib.exceptions;
diff --git a/java/src/hdf/hdf5lib/package-info.java b/java/src/hdf/hdf5lib/package-info.java
index 7ae4df9..e742197 100644
--- a/java/src/hdf/hdf5lib/package-info.java
+++ b/java/src/hdf/hdf5lib/package-info.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
diff --git a/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java b/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java
index 181d681..9861334 100644
--- a/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
diff --git a/java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java b/java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java
index 67c2463..62b2921 100644
--- a/java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java
+++ b/java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
diff --git a/java/src/hdf/hdf5lib/structs/package-info.java b/java/src/hdf/hdf5lib/structs/package-info.java
index a3ec6cd..7bd3dee 100644
--- a/java/src/hdf/hdf5lib/structs/package-info.java
+++ b/java/src/hdf/hdf5lib/structs/package-info.java
@@ -1,6 +1,5 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *