diff options
Diffstat (limited to 'java/src/jni/h5aImp.c')
-rw-r--r-- | java/src/jni/h5aImp.c | 594 |
1 files changed, 299 insertions, 295 deletions
diff --git a/java/src/jni/h5aImp.c b/java/src/jni/h5aImp.c index 8b3f9e5..fdfa14c 100644 --- a/java/src/jni/h5aImp.c +++ b/java/src/jni/h5aImp.c @@ -54,19 +54,17 @@ static herr_t H5A_iterate_cb(hid_t g_id, const char *name, const H5A_info_t *inf /* Local Macros */ /********************/ - /* * Class: hdf_hdf5lib_H5 * Method: H5Acreate * Signature: (JLjava/lang/String;JJJ)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Acreate - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong type_id, - jlong space_id, jlong create_plist) +Java_hdf_hdf5lib_H5__1H5Acreate(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong type_id, + jlong space_id, jlong create_plist) { const char *attrName = NULL; - hid_t attr_id = H5I_INVALID_HID; + hid_t attr_id = H5I_INVALID_HID; UNUSED(clss); @@ -75,7 +73,8 @@ Java_hdf_hdf5lib_H5__1H5Acreate PIN_JAVA_STRING(ENVONLY, name, attrName, NULL, "H5Acreate: attribute name not pinned"); - if ((attr_id = H5Acreate2((hid_t)loc_id, attrName, (hid_t)type_id, (hid_t)space_id, (hid_t)create_plist, (hid_t)H5P_DEFAULT)) < 0) + if ((attr_id = H5Acreate2((hid_t)loc_id, attrName, (hid_t)type_id, (hid_t)space_id, (hid_t)create_plist, + (hid_t)H5P_DEFAULT)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -91,13 +90,12 @@ done: * Signature: (JLjava/lang/String;)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Aopen_1name - (JNIEnv *env, jclass clss, jlong loc_id, jstring name) +Java_hdf_hdf5lib_H5__1H5Aopen_1name(JNIEnv *env, jclass clss, jlong loc_id, jstring name) { #ifndef H5_NO_DEPRECATED_SYMBOLS const char *attrName = NULL; #endif - hid_t attr_id = H5I_INVALID_HID; + hid_t attr_id = H5I_INVALID_HID; UNUSED(clss); @@ -111,7 +109,7 @@ Java_hdf_hdf5lib_H5__1H5Aopen_1name PIN_JAVA_STRING(ENVONLY, name, attrName, NULL, "H5Aopen_name: attribute name not pinned"); - if((attr_id = H5Aopen_name((hid_t)loc_id, attrName)) < 0) + if ((attr_id = H5Aopen_name((hid_t)loc_id, attrName)) < 0) H5_LIBRARY_ERROR(ENVONLY); #endif @@ -130,8 +128,7 @@ done: * Signature: (JI)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Aopen_1idx - (JNIEnv *env, jclass clss, jlong loc_id, jint idx) +Java_hdf_hdf5lib_H5__1H5Aopen_1idx(JNIEnv *env, jclass clss, jlong loc_id, jint idx) { hid_t attr_id = H5I_INVALID_HID; @@ -142,7 +139,7 @@ Java_hdf_hdf5lib_H5__1H5Aopen_1idx UNUSED(idx); H5_UNIMPLEMENTED(ENVONLY, "H5Aopen_idx: not implemented"); #else - if ((attr_id = H5Aopen_idx((hid_t) loc_id, (unsigned int) idx)) < 0) + if ((attr_id = H5Aopen_idx((hid_t)loc_id, (unsigned int)idx)) < 0) H5_LIBRARY_ERROR(ENVONLY); #endif @@ -156,13 +153,13 @@ done: * Signature: (JJ[BZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aread - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jbyteArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Aread(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jbyteArray buf, + jboolean isCriticalPinning) { - jboolean readBufIsCopy; - jbyte *readBuf = NULL; - htri_t data_class; - herr_t status = FAIL; + jboolean readBufIsCopy; + jbyte * readBuf = NULL; + htri_t data_class; + herr_t status = FAIL; UNUSED(clss); @@ -183,7 +180,8 @@ Java_hdf_hdf5lib_H5_H5Aread H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread: variable length type not supported"); if (isCriticalPinning) { - PIN_BYTE_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread: read buffer not critically pinned"); + PIN_BYTE_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, + "H5Aread: read buffer not critically pinned"); } else { PIN_BYTE_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread: read buffer not pinned"); @@ -211,13 +209,13 @@ done: * Signature: (JJ[BZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Awrite - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jbyteArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Awrite(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jbyteArray buf, + jboolean isCriticalPinning) { - jboolean writeBufIsCopy; - jbyte *writeBuf = NULL; - htri_t data_class; - herr_t status = FAIL; + jboolean writeBufIsCopy; + jbyte * writeBuf = NULL; + htri_t data_class; + herr_t status = FAIL; UNUSED(clss); @@ -238,7 +236,8 @@ Java_hdf_hdf5lib_H5_H5Awrite H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite: variable length type not supported"); if (isCriticalPinning) { - PIN_BYTE_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite: write buffer not critically pinned"); + PIN_BYTE_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, + "H5Awrite: write buffer not critically pinned"); } else { PIN_BYTE_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite: write buffer not pinned"); @@ -266,13 +265,13 @@ done: * Signature: (JJ[SZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aread_1short - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jshortArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Aread_1short(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, + jshortArray buf, jboolean isCriticalPinning) { - jboolean readBufIsCopy; - jshort *readBuf = NULL; - htri_t data_class; - herr_t status = FAIL; + jboolean readBufIsCopy; + jshort * readBuf = NULL; + htri_t data_class; + herr_t status = FAIL; UNUSED(clss); @@ -293,7 +292,8 @@ Java_hdf_hdf5lib_H5_H5Aread_1short H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_short: variable length type not supported"); if (isCriticalPinning) { - PIN_SHORT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_short: read buffer not critically pinned"); + PIN_SHORT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, + "H5Aread_short: read buffer not critically pinned"); } else { PIN_SHORT_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_short: read buffer not pinned"); @@ -321,13 +321,13 @@ done: * Signature: (JJ[SZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Awrite_1short - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jshortArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Awrite_1short(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, + jshortArray buf, jboolean isCriticalPinning) { - jboolean writeBufIsCopy; - jshort *writeBuf = NULL; - htri_t data_class; - herr_t status = FAIL; + jboolean writeBufIsCopy; + jshort * writeBuf = NULL; + htri_t data_class; + herr_t status = FAIL; UNUSED(clss); @@ -348,7 +348,8 @@ Java_hdf_hdf5lib_H5_H5Awrite_1short H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_short: variable length type not supported"); if (isCriticalPinning) { - PIN_SHORT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_short: write buffer not critically pinned"); + PIN_SHORT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, + "H5Awrite_short: write buffer not critically pinned"); } else { PIN_SHORT_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_short: write buffer not pinned"); @@ -376,13 +377,13 @@ done: * Signature: (JJ[IZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aread_1int - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jintArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Aread_1int(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jintArray buf, + jboolean isCriticalPinning) { - jboolean readBufIsCopy; - htri_t data_class; - jint *readBuf = NULL; - herr_t status = FAIL; + jboolean readBufIsCopy; + htri_t data_class; + jint * readBuf = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -403,7 +404,8 @@ Java_hdf_hdf5lib_H5_H5Aread_1int H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_int: variable length type not supported"); if (isCriticalPinning) { - PIN_INT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_int: read buffer not critically pinned"); + PIN_INT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, + "H5Aread_int: read buffer not critically pinned"); } else { PIN_INT_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_int: read buffer not pinned"); @@ -431,13 +433,13 @@ done: * Signature: (JJ[IZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Awrite_1int - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jintArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Awrite_1int(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jintArray buf, + jboolean isCriticalPinning) { - jboolean writeBufIsCopy; - jint *writeBuf = NULL; - htri_t data_class; - herr_t status = FAIL; + jboolean writeBufIsCopy; + jint * writeBuf = NULL; + htri_t data_class; + herr_t status = FAIL; UNUSED(clss); @@ -458,7 +460,8 @@ Java_hdf_hdf5lib_H5_H5Awrite_1int H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_int: variable length type not supported"); if (isCriticalPinning) { - PIN_INT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_int: write buffer not critically pinned"); + PIN_INT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, + "H5Awrite_int: write buffer not critically pinned"); } else { PIN_INT_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_int: write buffer not pinned"); @@ -486,13 +489,13 @@ done: * Signature: (JJ[JZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aread_1long - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jlongArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Aread_1long(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jlongArray buf, + jboolean isCriticalPinning) { - jboolean readBufIsCopy; - jlong *readBuf = NULL; - htri_t data_class; - herr_t status = FAIL; + jboolean readBufIsCopy; + jlong * readBuf = NULL; + htri_t data_class; + herr_t status = FAIL; UNUSED(clss); @@ -513,7 +516,8 @@ Java_hdf_hdf5lib_H5_H5Aread_1long H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_long: variable length type not supported"); if (isCriticalPinning) { - PIN_LONG_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_long: read buffer not critically pinned"); + PIN_LONG_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, + "H5Aread_long: read buffer not critically pinned"); } else { PIN_LONG_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_long: read buffer not pinned"); @@ -541,13 +545,13 @@ done: * Signature: (JJ[JZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Awrite_1long - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jlongArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Awrite_1long(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jlongArray buf, + jboolean isCriticalPinning) { - jboolean writeBufIsCopy; - jlong *writeBuf = NULL; - htri_t data_class; - herr_t status = FAIL; + jboolean writeBufIsCopy; + jlong * writeBuf = NULL; + htri_t data_class; + herr_t status = FAIL; UNUSED(clss); @@ -568,7 +572,8 @@ Java_hdf_hdf5lib_H5_H5Awrite_1long H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_long: variable length type not supported"); if (isCriticalPinning) { - PIN_LONG_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_long: write buffer not critically pinned"); + PIN_LONG_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, + "H5Awrite_long: write buffer not critically pinned"); } else { PIN_LONG_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_long: write buffer not pinned"); @@ -596,13 +601,13 @@ done: * Signature: (JJ[FZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aread_1float - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jfloatArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Aread_1float(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, + jfloatArray buf, jboolean isCriticalPinning) { - jboolean readBufIsCopy; - jfloat *readBuf = NULL; - htri_t data_class; - herr_t status = FAIL; + jboolean readBufIsCopy; + jfloat * readBuf = NULL; + htri_t data_class; + herr_t status = FAIL; UNUSED(clss); @@ -623,7 +628,8 @@ Java_hdf_hdf5lib_H5_H5Aread_1float H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_float: variable length type not supported"); if (isCriticalPinning) { - PIN_FLOAT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_float: read buffer not critically pinned"); + PIN_FLOAT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, + "H5Aread_float: read buffer not critically pinned"); } else { PIN_FLOAT_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_float: read buffer not pinned"); @@ -651,13 +657,13 @@ done: * Signature: (JJ[FZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Awrite_1float - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jfloatArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Awrite_1float(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, + jfloatArray buf, jboolean isCriticalPinning) { - jboolean writeBufIsCopy; - jfloat *writeBuf = NULL; - htri_t data_class; - herr_t status = FAIL; + jboolean writeBufIsCopy; + jfloat * writeBuf = NULL; + htri_t data_class; + herr_t status = FAIL; UNUSED(clss); @@ -678,7 +684,8 @@ Java_hdf_hdf5lib_H5_H5Awrite_1float H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_float: variable length type not supported"); if (isCriticalPinning) { - PIN_FLOAT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_float: write buffer not critically pinned"); + PIN_FLOAT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, + "H5Awrite_float: write buffer not critically pinned"); } else { PIN_FLOAT_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_float: write buffer not pinned"); @@ -706,13 +713,13 @@ done: * Signature: (JJ[DZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aread_1double - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jdoubleArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Aread_1double(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, + jdoubleArray buf, jboolean isCriticalPinning) { - jboolean readBufIsCopy; - jdouble *readBuf = NULL; - htri_t data_class; - herr_t status = FAIL; + jboolean readBufIsCopy; + jdouble *readBuf = NULL; + htri_t data_class; + herr_t status = FAIL; UNUSED(clss); @@ -733,7 +740,8 @@ Java_hdf_hdf5lib_H5_H5Aread_1double H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_double: variable length type not supported"); if (isCriticalPinning) { - PIN_DOUBLE_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_double: read buffer not critically pinned"); + PIN_DOUBLE_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, + "H5Aread_double: read buffer not critically pinned"); } else { PIN_DOUBLE_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_double: read buffer not pinned"); @@ -761,13 +769,13 @@ done: * Signature: (JJ[DZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Awrite_1double - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jdoubleArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Awrite_1double(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, + jdoubleArray buf, jboolean isCriticalPinning) { - jboolean writeBufIsCopy; - jdouble *writeBuf = NULL; - htri_t data_class; - herr_t status = FAIL; + jboolean writeBufIsCopy; + jdouble *writeBuf = NULL; + htri_t data_class; + herr_t status = FAIL; UNUSED(clss); @@ -788,7 +796,8 @@ Java_hdf_hdf5lib_H5_H5Awrite_1double H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_double: variable length type not supported"); if (isCriticalPinning) { - PIN_DOUBLE_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_double: write buffer not critically pinned"); + PIN_DOUBLE_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, + "H5Awrite_double: write buffer not critically pinned"); } else { PIN_DOUBLE_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_double: write buffer not pinned"); @@ -816,16 +825,16 @@ done: * Signature: (JJ[Ljava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aread_1string - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray j_buf) +Java_hdf_hdf5lib_H5_H5Aread_1string(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, + jobjectArray j_buf) { - jstring jstr; - size_t str_len; - size_t pos; - jsize i, n; - char *c_buf = NULL; - char *cstr = NULL; - herr_t status = FAIL; + jstring jstr; + size_t str_len; + size_t pos; + jsize i, n; + char * c_buf = NULL; + char * cstr = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -840,22 +849,23 @@ Java_hdf_hdf5lib_H5_H5Aread_1string if (!(str_len = H5Tget_size((hid_t)mem_type_id))) H5_LIBRARY_ERROR(ENVONLY); - if (NULL == (cstr = (char *) HDmalloc(str_len + 1))) + if (NULL == (cstr = (char *)HDmalloc(str_len + 1))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Aread_string: memory allocation failed"); - if (NULL == (c_buf = (char *) HDmalloc((size_t)n * str_len))) + if (NULL == (c_buf = (char *)HDmalloc((size_t)n * str_len))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Aread_string: memory allocation failed"); if ((status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, c_buf)) < 0) H5_LIBRARY_ERROR(ENVONLY); for (i = 0, pos = 0; i < n; i++) { - HDmemcpy(cstr, c_buf+pos, str_len); + HDmemcpy(cstr, c_buf + pos, str_len); cstr[str_len] = '\0'; if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, cstr))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Aread_string: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, "H5Aread_string: out of memory - unable to construct string from UTF characters"); } ENVPTR->SetObjectArrayElement(ENVONLY, j_buf, i, jstr); @@ -881,14 +891,14 @@ done: * Signature: (JJ[Ljava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Awrite_1string - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray j_buf) +Java_hdf_hdf5lib_H5_H5Awrite_1string(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, + jobjectArray j_buf) { const char *utf8 = NULL; jstring obj; size_t i, str_len; jsize n; - char *c_buf = NULL; + char * c_buf = NULL; herr_t status = FAIL; UNUSED(clss); @@ -904,11 +914,11 @@ Java_hdf_hdf5lib_H5_H5Awrite_1string if (!(str_len = H5Tget_size((hid_t)mem_type_id))) H5_LIBRARY_ERROR(ENVONLY); - if (NULL == (c_buf = (char *) HDmalloc((size_t)n * str_len))) + if (NULL == (c_buf = (char *)HDmalloc((size_t)n * str_len))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Awrite_string: memory allocation failed"); - for (i = 0; i < (size_t) n; i++) { - if (NULL == (obj = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)j_buf, (jsize) i))) { + for (i = 0; i < (size_t)n; i++) { + if (NULL == (obj = (jstring)ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)j_buf, (jsize)i))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); /* @@ -951,16 +961,15 @@ done: * Signature: (JJ[Ljava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5AreadVL - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf) +Java_hdf_hdf5lib_H5_H5AreadVL(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf) { H5T_class_t type_class; - htri_t isStr = 0; - htri_t isVlenStr = 0; - htri_t isComplex = 0; + htri_t isStr = 0; + htri_t isVlenStr = 0; + htri_t isComplex = 0; htri_t isComplex2 = 0; hid_t nested_tid = H5I_INVALID_HID; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -980,7 +989,7 @@ Java_hdf_hdf5lib_H5_H5AreadVL if ((num_members = H5Tget_nmembers(mem_type_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); - for (i = 0; i < (unsigned) num_members; i++) { + for (i = 0; i < (unsigned)num_members; i++) { if ((nested_tid = H5Tget_member_type((hid_t)mem_type_id, i)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1023,21 +1032,21 @@ done: * buffer in turn. */ static herr_t -H5AreadVL_str - (JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf) +H5AreadVL_str(JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf) { - jstring jstr; - jsize i, n; - char **strs = NULL; - herr_t status = FAIL; + jstring jstr; + jsize i, n; + char ** strs = NULL; + herr_t status = FAIL; if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5AreadVL_str: buf length < 0"); } - if (NULL == (strs = (char **) HDcalloc((size_t)n, sizeof(char *)))) - H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5AreadVL_str: failed to allocate variable length string read buffer"); + if (NULL == (strs = (char **)HDcalloc((size_t)n, sizeof(char *)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "H5AreadVL_str: failed to allocate variable length string read buffer"); if ((status = H5Aread(aid, tid, strs)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1081,18 +1090,17 @@ done: * in the output buffer in turn. */ static herr_t -H5AreadVL_asstr - (JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf) +H5AreadVL_asstr(JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf) { - hsize_t dims[H5S_MAX_RANK]; - jstring jstr; - h5str_t h5str; - size_t typeSize; - size_t i; - hid_t sid = H5I_INVALID_HID; - jsize n; - void *readBuf = NULL; - herr_t status = FAIL; + hsize_t dims[H5S_MAX_RANK]; + jstring jstr; + h5str_t h5str; + size_t typeSize; + size_t i; + hid_t sid = H5I_INVALID_HID; + jsize n; + void * readBuf = NULL; + herr_t status = FAIL; HDmemset(&h5str, 0, sizeof(h5str_t)); @@ -1122,16 +1130,16 @@ H5AreadVL_asstr H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5AreadVL_asstr: failed to allocate buffer"); /* Convert each element to a char string */ - for (i = 0; i < (size_t) n; i++) { + for (i = 0; i < (size_t)n; i++) { h5str.s[0] = '\0'; - if (!h5str_sprintf(ENVONLY, &h5str, aid, tid, &(((char *) readBuf)[i * typeSize]), typeSize, 0)) + if (!h5str_sprintf(ENVONLY, &h5str, aid, tid, &(((char *)readBuf)[i * typeSize]), typeSize, 0)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - ENVPTR->SetObjectArrayElement(ENVONLY, buf, (jsize) i, jstr); + ENVPTR->SetObjectArrayElement(ENVONLY, buf, (jsize)i, jstr); CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); ENVPTR->DeleteLocalRef(ENVONLY, jstr); @@ -1156,16 +1164,15 @@ done: * Signature: (JJ[Ljava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5AwriteVL - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf) +Java_hdf_hdf5lib_H5_H5AwriteVL(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf) { H5T_class_t type_class; - htri_t isStr = 0; - htri_t isVlenStr = 0; - htri_t isComplex = 0; + htri_t isStr = 0; + htri_t isVlenStr = 0; + htri_t isComplex = 0; htri_t isComplex2 = 0; hid_t nested_tid = H5I_INVALID_HID; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -1185,7 +1192,7 @@ Java_hdf_hdf5lib_H5_H5AwriteVL if ((num_members = H5Tget_nmembers(mem_type_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); - for(i = 0; i < (unsigned) num_members; i++) { + for (i = 0; i < (unsigned)num_members; i++) { if ((nested_tid = H5Tget_member_type((hid_t)mem_type_id, i)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1227,28 +1234,28 @@ done: * The buffer of C-strings is then written to the HDF5 attribute specified. */ static herr_t -H5AwriteVL_str - (JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf) +H5AwriteVL_str(JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf) { - const char *utf8 = NULL; - jstring obj; - jsize size; - jint i; - char **writeBuf = NULL; - herr_t status = FAIL; - - if ((size = ENVPTR->GetArrayLength(ENVONLY, (jarray) buf)) < 0) { + const char *utf8 = NULL; + jstring obj; + jsize size; + jint i; + char ** writeBuf = NULL; + herr_t status = FAIL; + + if ((size = ENVPTR->GetArrayLength(ENVONLY, (jarray)buf)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5AwriteVL_str: buf length < 0"); } - if (NULL == (writeBuf = (char **) HDcalloc((size_t)size + 1, sizeof(char *)))) - H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5AwriteVL_str: failed to allocate variable length string write buffer"); + if (NULL == (writeBuf = (char **)HDcalloc((size_t)size + 1, sizeof(char *)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "H5AwriteVL_str: failed to allocate variable length string write buffer"); for (i = 0; i < size; ++i) { jsize length; - if (NULL == (obj = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray) buf, i))) { + if (NULL == (obj = (jstring)ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)buf, i))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); /* @@ -1263,7 +1270,7 @@ H5AwriteVL_str PIN_JAVA_STRING(ENVONLY, obj, utf8, NULL, "H5AwriteVL_str: string not pinned"); - if (NULL == (writeBuf[i] = (char *) HDmalloc((size_t)length + 1))) + if (NULL == (writeBuf[i] = (char *)HDmalloc((size_t)length + 1))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5AwriteVL_str: failed to allocate string buffer"); HDstrncpy(writeBuf[i], utf8, (size_t)length); @@ -1299,8 +1306,7 @@ done: * elements is then written to the HDF5 attribute. */ static herr_t -H5AwriteVL_asstr - (JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf) +H5AwriteVL_asstr(JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf) { const char *utf8 = NULL; hsize_t dims[H5S_MAX_RANK]; @@ -1309,8 +1315,8 @@ H5AwriteVL_asstr size_t i; hid_t sid = H5I_INVALID_HID; jsize n; - void *writeBuf = NULL; - herr_t status = FAIL; + void * writeBuf = NULL; + herr_t status = FAIL; if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); @@ -1333,14 +1339,14 @@ H5AwriteVL_asstr * free space in time. Instead, we use "H5free_memory(strs[i])" to free individual strings * once done. */ - for (i = 0; i < (size_t) n; i++) { - if (NULL == (jstr = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray) buf, (jsize) i))) { + for (i = 0; i < (size_t)n; i++) { + if (NULL == (jstr = (jstring)ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)buf, (jsize)i))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); /* * If the string object was NULL, skip it. */ - HDmemset(&(((char *) writeBuf)[i * typeSize]), 0, typeSize); + HDmemset(&(((char *)writeBuf)[i * typeSize]), 0, typeSize); continue; } @@ -1356,7 +1362,7 @@ H5AwriteVL_asstr * one before destroying it with h5str_convert. */ - if (!h5str_convert(ENVONLY, (char **) &utf8, aid, tid, &(((char *) writeBuf)[i * typeSize]), 0)) + if (!h5str_convert(ENVONLY, (char **)&utf8, aid, tid, &(((char *)writeBuf)[i * typeSize]), 0)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); UNPIN_JAVA_STRING(ENVONLY, jstr, utf8); @@ -1387,14 +1393,14 @@ done: * Signature: (JJ[Ljava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aread_1reg_1ref - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf) +Java_hdf_hdf5lib_H5_H5Aread_1reg_1ref(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, + jobjectArray buf) { - H5R_ref_t *ref_data = NULL; - h5str_t h5str; - jstring jstr; - jsize i, n; - herr_t status = FAIL; + H5R_ref_t *ref_data = NULL; + h5str_t h5str; + jstring jstr; + jsize i, n; + herr_t status = FAIL; UNUSED(clss); @@ -1405,7 +1411,7 @@ Java_hdf_hdf5lib_H5_H5Aread_1reg_1ref H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_reg_ref: buf length < 0"); } - if (NULL == (ref_data = (H5R_ref_t *) HDcalloc(1, (size_t)n * sizeof(H5R_ref_t)))) + if (NULL == (ref_data = (H5R_ref_t *)HDcalloc(1, (size_t)n * sizeof(H5R_ref_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Aread_reg_ref: failed to allocate read buffer"); if ((status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, ref_data)) < 0) @@ -1419,7 +1425,7 @@ Java_hdf_hdf5lib_H5_H5Aread_1reg_1ref for (i = 0; i < n; i++) { h5str.s[0] = '\0'; - if (!h5str_sprintf(ENVONLY, &h5str, (hid_t)attr_id, (hid_t)mem_type_id, (void*)&ref_data[i], 0, 0)) + if (!h5str_sprintf(ENVONLY, &h5str, (hid_t)attr_id, (hid_t)mem_type_id, (void *)&ref_data[i], 0, 0)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s))) @@ -1446,8 +1452,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Aget_1space - (JNIEnv *env, jclass clss, jlong attr_id) +Java_hdf_hdf5lib_H5__1H5Aget_1space(JNIEnv *env, jclass clss, jlong attr_id) { hid_t retVal = H5I_INVALID_HID; @@ -1466,8 +1471,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Aget_1type - (JNIEnv *env, jclass clss, jlong attr_id) +Java_hdf_hdf5lib_H5__1H5Aget_1type(JNIEnv *env, jclass clss, jlong attr_id) { hid_t retVal = H5I_INVALID_HID; @@ -1486,19 +1490,18 @@ done: * Signature: (J)Ljava/lang/String; */ JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Aget_1name - (JNIEnv *env, jclass clss, jlong attr_id) +Java_hdf_hdf5lib_H5_H5Aget_1name(JNIEnv *env, jclass clss, jlong attr_id) { - jstring str = NULL; - ssize_t buf_size; - char *attrName = NULL; + jstring str = NULL; + ssize_t buf_size; + char * attrName = NULL; UNUSED(clss); if ((buf_size = H5Aget_name((hid_t)attr_id, 0, NULL)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (NULL == (attrName = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) + if (NULL == (attrName = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Aget_name: failed to allocate attribute name buffer"); if (H5Aget_name((hid_t)attr_id, (size_t)buf_size + 1, attrName) < 0) @@ -1521,8 +1524,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aget_1num_1attrs - (JNIEnv *env, jclass clss, jlong loc_id) +Java_hdf_hdf5lib_H5_H5Aget_1num_1attrs(JNIEnv *env, jclass clss, jlong loc_id) { int retVal = FAIL; @@ -1546,11 +1548,10 @@ done: * Signature: (JLjava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Adelete - (JNIEnv *env, jclass clss, jlong loc_id, jstring name) +Java_hdf_hdf5lib_H5_H5Adelete(JNIEnv *env, jclass clss, jlong loc_id, jstring name) { const char *attrName = NULL; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -1575,8 +1576,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5__1H5Aclose - (JNIEnv *env, jclass clss, jlong attr_id) +Java_hdf_hdf5lib_H5__1H5Aclose(JNIEnv *env, jclass clss, jlong attr_id) { herr_t retVal = FAIL; @@ -1595,12 +1595,11 @@ done: * Signature: (JLjava/lang/String;JJJJ)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Acreate2 - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong type_id, - jlong space_id, jlong create_plist, jlong access_plist) +Java_hdf_hdf5lib_H5__1H5Acreate2(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong type_id, + jlong space_id, jlong create_plist, jlong access_plist) { const char *attrName = NULL; - hid_t status = H5I_INVALID_HID; + hid_t status = H5I_INVALID_HID; UNUSED(clss); @@ -1609,8 +1608,8 @@ Java_hdf_hdf5lib_H5__1H5Acreate2 PIN_JAVA_STRING(ENVONLY, name, attrName, NULL, "H5Acreate2: attribute name not pinned"); - if ((status = H5Acreate2((hid_t)loc_id, attrName, (hid_t)type_id, - (hid_t)space_id, (hid_t)create_plist, (hid_t)access_plist)) < 0) + if ((status = H5Acreate2((hid_t)loc_id, attrName, (hid_t)type_id, (hid_t)space_id, (hid_t)create_plist, + (hid_t)access_plist)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -1626,12 +1625,11 @@ done: * Signature: (JLjava/lang/String;J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Aopen - (JNIEnv *env, jclass clss, jlong obj_id, jstring name, jlong access_plist) +Java_hdf_hdf5lib_H5__1H5Aopen(JNIEnv *env, jclass clss, jlong obj_id, jstring name, jlong access_plist) { const char *attrName = NULL; - hid_t retVal = H5I_INVALID_HID; + hid_t retVal = H5I_INVALID_HID; UNUSED(clss); @@ -1656,11 +1654,11 @@ done: * Signature: (JLjava/lang/String;IIJJJ)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Aopen_1by_1idx - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint idx_type, jint order, jlong n, jlong aapl_id, jlong lapl_id) +Java_hdf_hdf5lib_H5__1H5Aopen_1by_1idx(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint idx_type, + jint order, jlong n, jlong aapl_id, jlong lapl_id) { const char *objName = NULL; - hid_t retVal = H5I_INVALID_HID; + hid_t retVal = H5I_INVALID_HID; UNUSED(clss); @@ -1669,8 +1667,8 @@ Java_hdf_hdf5lib_H5__1H5Aopen_1by_1idx PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Aopen_by_idx: object name not pinned"); - if ((retVal = H5Aopen_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type, - (H5_iter_order_t)order, (hsize_t)n, (hid_t)aapl_id, (hid_t)lapl_id)) < 0) + if ((retVal = H5Aopen_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type, (H5_iter_order_t)order, + (hsize_t)n, (hid_t)aapl_id, (hid_t)lapl_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -1681,17 +1679,18 @@ done: } /* end Java_hdf_hdf5lib_H5__1H5Aopen_1by_1idx */ /* -* Class: hdf_hdf5lib_H5 -* Method: _H5Acreate_by_name -* Signature: (JLjava/lang/String;Ljava/lang/String;JJJJJ)J -*/ + * Class: hdf_hdf5lib_H5 + * Method: _H5Acreate_by_name + * Signature: (JLjava/lang/String;Ljava/lang/String;JJJJJ)J + */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Acreate_1by_1name - (JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jstring attr_name, jlong type_id, jlong space_id, jlong acpl_id, jlong aapl_id, jlong lapl_id) +Java_hdf_hdf5lib_H5__1H5Acreate_1by_1name(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, + jstring attr_name, jlong type_id, jlong space_id, jlong acpl_id, + jlong aapl_id, jlong lapl_id) { - const char *objName = NULL; + const char *objName = NULL; const char *attrName = NULL; - hid_t retVal = H5I_INVALID_HID; + hid_t retVal = H5I_INVALID_HID; UNUSED(clss); @@ -1703,8 +1702,8 @@ Java_hdf_hdf5lib_H5__1H5Acreate_1by_1name PIN_JAVA_STRING(ENVONLY, obj_name, objName, NULL, "H5Acreate_by_name: object name not pinned"); PIN_JAVA_STRING(ENVONLY, attr_name, attrName, NULL, "H5Acreate_by_name: attribute name not pinned"); - if ((retVal = H5Acreate_by_name((hid_t)loc_id, objName, attrName, (hid_t)type_id, - (hid_t)space_id, (hid_t)acpl_id, (hid_t)aapl_id, (hid_t)lapl_id)) < 0) + if ((retVal = H5Acreate_by_name((hid_t)loc_id, objName, attrName, (hid_t)type_id, (hid_t)space_id, + (hid_t)acpl_id, (hid_t)aapl_id, (hid_t)lapl_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -1722,12 +1721,12 @@ done: * Signature: (JLjava/lang/String;Ljava/lang/String;J)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Aexists_1by_1name - (JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jstring attr_name, jlong lapl_id) +Java_hdf_hdf5lib_H5_H5Aexists_1by_1name(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, + jstring attr_name, jlong lapl_id) { - const char *objName = NULL; + const char *objName = NULL; const char *attrName = NULL; - htri_t bval = JNI_FALSE; + htri_t bval = JNI_FALSE; UNUSED(clss); @@ -1759,12 +1758,12 @@ done: * Signature: (JLjava/lang/String;Ljava/lang/String)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Arename - (JNIEnv *env, jclass clss, jlong loc_id, jstring old_attr_name, jstring new_attr_name) +Java_hdf_hdf5lib_H5_H5Arename(JNIEnv *env, jclass clss, jlong loc_id, jstring old_attr_name, + jstring new_attr_name) { const char *oldAttrName = NULL; const char *newAttrName = NULL; - herr_t retVal = FAIL; + herr_t retVal = FAIL; UNUSED(clss); @@ -1794,13 +1793,13 @@ done: * Signature: (JLjava/lang/String;Ljava/lang/String;Ljava/lang/String;J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Arename_1by_1name - (JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jstring old_attr_name, jstring new_attr_name, jlong lapl_id) +Java_hdf_hdf5lib_H5_H5Arename_1by_1name(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, + jstring old_attr_name, jstring new_attr_name, jlong lapl_id) { - const char *objName = NULL; + const char *objName = NULL; const char *oldAttrName = NULL; const char *newAttrName = NULL; - herr_t retVal = FAIL; + herr_t retVal = FAIL; UNUSED(clss); @@ -1812,8 +1811,10 @@ Java_hdf_hdf5lib_H5_H5Arename_1by_1name H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Arename_by_name: new attribute name is NULL"); PIN_JAVA_STRING(ENVONLY, obj_name, objName, NULL, "H5Arename_by_name: object name not pinned"); - PIN_JAVA_STRING(ENVONLY, old_attr_name, oldAttrName, NULL, "H5Arename_by_name: old attribute name not pinned"); - PIN_JAVA_STRING(ENVONLY, new_attr_name, newAttrName, NULL, "H5Arename_by_name: new attribute name not pinned"); + PIN_JAVA_STRING(ENVONLY, old_attr_name, oldAttrName, NULL, + "H5Arename_by_name: old attribute name not pinned"); + PIN_JAVA_STRING(ENVONLY, new_attr_name, newAttrName, NULL, + "H5Arename_by_name: new attribute name not pinned"); if ((retVal = H5Arename_by_name((hid_t)loc_id, objName, oldAttrName, newAttrName, (hid_t)lapl_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1835,13 +1836,13 @@ done: * Signature: (JLjava/lang/String;IIJJ)Ljava/lang/String; */ JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Aget_1name_1by_1idx - (JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jint idx_type, jint order, jlong n, jlong lapl_id) +Java_hdf_hdf5lib_H5_H5Aget_1name_1by_1idx(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, + jint idx_type, jint order, jlong n, jlong lapl_id) { - const char *objName = NULL; - jstring str = NULL; + const char *objName = NULL; + jstring str = NULL; ssize_t status_size = -1; - char *attrName = NULL; + char * attrName = NULL; UNUSED(clss); @@ -1851,15 +1852,16 @@ Java_hdf_hdf5lib_H5_H5Aget_1name_1by_1idx PIN_JAVA_STRING(ENVONLY, obj_name, objName, NULL, "H5Aget_name_by_idx: object name not pinned"); /* Get the length of the attribute name */ - if ((status_size = H5Aget_name_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type, - (H5_iter_order_t) order, (hsize_t) n, (char *)NULL, (size_t)0, (hid_t)lapl_id)) < 0) + if ((status_size = + H5Aget_name_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type, (H5_iter_order_t)order, + (hsize_t)n, (char *)NULL, (size_t)0, (hid_t)lapl_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (NULL == (attrName = (char *) HDmalloc(sizeof(char) * (size_t) status_size + 1))) + if (NULL == (attrName = (char *)HDmalloc(sizeof(char) * (size_t)status_size + 1))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Aget_name_by_idx: failed to allocate buffer for attribute name"); - if ((H5Aget_name_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type, - (H5_iter_order_t) order, (hsize_t) n, (char *)attrName, (size_t)status_size + 1, (hid_t)lapl_id)) < 0) + if ((H5Aget_name_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t)n, + (char *)attrName, (size_t)status_size + 1, (hid_t)lapl_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); attrName[status_size] = '\0'; @@ -1881,8 +1883,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Aget_1storage_1size - (JNIEnv *env, jclass clss, jlong attr_id) +Java_hdf_hdf5lib_H5_H5Aget_1storage_1size(JNIEnv *env, jclass clss, jlong attr_id) { hsize_t retVal = 0; @@ -1901,8 +1902,7 @@ done: * Signature: (J)Lhdf/hdf5lib/structs/H5A_info_t; */ JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Aget_1info - (JNIEnv *env, jclass clss, jlong attr_id) +Java_hdf_hdf5lib_H5_H5Aget_1info(JNIEnv *env, jclass clss, jlong attr_id) { H5A_info_t ainfo; jobject ret_obj = NULL; @@ -1930,8 +1930,8 @@ done: * Signature: (JLjava/lang/String;IIJJ)Lhdf/hdf5lib/structs/H5A_info_t; */ JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Aget_1info_1by_1idx - (JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jint idx_type, jint order, jlong n, jlong lapl_id) +Java_hdf_hdf5lib_H5_H5Aget_1info_1by_1idx(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, + jint idx_type, jint order, jlong n, jlong lapl_id) { const char *objName = NULL; H5A_info_t ainfo; @@ -1946,8 +1946,8 @@ Java_hdf_hdf5lib_H5_H5Aget_1info_1by_1idx PIN_JAVA_STRING(ENVONLY, obj_name, objName, NULL, "H5Aget_info_by_idx: object name not pinned"); - if ((status = H5Aget_info_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type, - (H5_iter_order_t)order, (hsize_t)n, &ainfo, (hid_t)lapl_id)) < 0) + if ((status = H5Aget_info_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type, (H5_iter_order_t)order, + (hsize_t)n, &ainfo, (hid_t)lapl_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); args[0].z = ainfo.corder_valid; @@ -1970,10 +1970,10 @@ done: * Signature: (JLjava/lang/String;Ljava/lang/String;J)Lhdf/hdf5lib/structs/H5A_info_t; */ JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Aget_1info_1by_1name - (JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jstring attr_name, jlong lapl_id) +Java_hdf_hdf5lib_H5_H5Aget_1info_1by_1name(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, + jstring attr_name, jlong lapl_id) { - const char *objName = NULL; + const char *objName = NULL; const char *attrName = NULL; H5A_info_t ainfo; herr_t status; @@ -2015,12 +2015,12 @@ done: * Signature: (JLjava/lang/String;Ljava/lang/String;J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Adelete_1by_1name - (JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jstring attr_name, jlong lapl_id) +Java_hdf_hdf5lib_H5_H5Adelete_1by_1name(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, + jstring attr_name, jlong lapl_id) { - const char *objName = NULL; + const char *objName = NULL; const char *attrName = NULL; - herr_t retVal = FAIL; + herr_t retVal = FAIL; UNUSED(clss); @@ -2050,11 +2050,10 @@ done: * Signature: (JLjava/lang/String;)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Aexists - (JNIEnv *env, jclass clss, jlong obj_id, jstring attr_name) +Java_hdf_hdf5lib_H5_H5Aexists(JNIEnv *env, jclass clss, jlong obj_id, jstring attr_name) { const char *attrName = NULL; - htri_t bval = JNI_FALSE; + htri_t bval = JNI_FALSE; UNUSED(clss); @@ -2081,11 +2080,11 @@ done: * Signature: (JLjava/lang/String;IIJJ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Adelete_1by_1idx - (JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jint idx_type, jint order, jlong n, jlong lapl_id) +Java_hdf_hdf5lib_H5_H5Adelete_1by_1idx(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, + jint idx_type, jint order, jlong n, jlong lapl_id) { const char *objName = NULL; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -2094,7 +2093,8 @@ Java_hdf_hdf5lib_H5_H5Adelete_1by_1idx PIN_JAVA_STRING(ENVONLY, obj_name, objName, NULL, "H5Adelete_by_idx: object name not pinned"); - if ((status = H5Adelete_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t)n, (hid_t)lapl_id)) < 0) + if ((status = H5Adelete_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type, (H5_iter_order_t)order, + (hsize_t)n, (hid_t)lapl_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -2108,13 +2108,13 @@ done: * Signature: (JLjava/lang/String;Ljava/lang/String;JJ)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Aopen_1by_1name - (JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jstring attr_name, jlong aapl_id, jlong lapl_id) +Java_hdf_hdf5lib_H5__1H5Aopen_1by_1name(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, + jstring attr_name, jlong aapl_id, jlong lapl_id) { const char *attrName = NULL; - const char *objName = NULL; - hid_t status = H5I_INVALID_HID; + const char *objName = NULL; + hid_t status = H5I_INVALID_HID; UNUSED(clss); @@ -2144,8 +2144,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Aget_1create_1plist - (JNIEnv *env, jclass clss, jlong attr_id) +Java_hdf_hdf5lib_H5__1H5Aget_1create_1plist(JNIEnv *env, jclass clss, jlong attr_id) { hid_t retVal = H5I_INVALID_HID; @@ -2159,18 +2158,18 @@ done: } /* end Java_hdf_hdf5lib_H5__1H5Aget_1create_1plist */ static herr_t -H5A_iterate_cb - (hid_t g_id, const char *name, const H5A_info_t *info, void *cb_data) { +H5A_iterate_cb(hid_t g_id, const char *name, const H5A_info_t *info, void *cb_data) +{ cb_wrapper *wrapper = (cb_wrapper *)cb_data; jmethodID mid; - jobject cb_info_t = NULL; + jobject cb_info_t = NULL; jobject visit_callback = wrapper->visit_callback; jstring str; - JNIEnv *cbenv = NULL; + JNIEnv * cbenv = NULL; jclass cbcls; jvalue args[4]; - void *op_data = (void *)wrapper->op_data; - jint status = -1; + void * op_data = (void *)wrapper->op_data; + jint status = -1; if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) { CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE); @@ -2180,7 +2179,10 @@ H5A_iterate_cb if (NULL == (cbcls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cbcls, "callback", "(JLjava/lang/String;Lhdf/hdf5lib/structs/H5A_info_t;Lhdf/hdf5lib/callbacks/H5A_iterate_t;)I"))) + if (NULL == + (mid = CBENVPTR->GetMethodID( + CBENVONLY, cbcls, "callback", + "(JLjava/lang/String;Lhdf/hdf5lib/structs/H5A_info_t;Lhdf/hdf5lib/callbacks/H5A_iterate_t;)I"))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); if (NULL == (str = CBENVPTR->NewStringUTF(CBENVONLY, name))) @@ -2209,13 +2211,12 @@ done: * Signature: (JIIJLjava/lang/Object;Ljava/lang/Object;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aiterate - (JNIEnv *env, jclass clss, jlong grp_id, jint idx_type, jint order, - jlong idx, jobject callback_op, jobject op_data) +Java_hdf_hdf5lib_H5_H5Aiterate(JNIEnv *env, jclass clss, jlong grp_id, jint idx_type, jint order, jlong idx, + jobject callback_op, jobject op_data) { - cb_wrapper wrapper = { callback_op, op_data }; + cb_wrapper wrapper = {callback_op, op_data}; hsize_t start_idx = (hsize_t)idx; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -2227,7 +2228,8 @@ Java_hdf_hdf5lib_H5_H5Aiterate if (NULL == callback_op) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aiterate: callback_op is NULL"); - if ((status = H5Aiterate2((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t*)&start_idx, (H5A_operator2_t)H5A_iterate_cb, (void*)&wrapper)) < 0) + if ((status = H5Aiterate2((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, + (hsize_t *)&start_idx, (H5A_operator2_t)H5A_iterate_cb, (void *)&wrapper)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -2240,14 +2242,14 @@ done: * Signature: (JLjava/lang/String;IIJLjava/lang/Object;Ljava/lang/Object;J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aiterate_1by_1name - (JNIEnv *env, jclass clss, jlong grp_id, jstring name, jint idx_type, jint order, - jlong idx, jobject callback_op, jobject op_data, jlong access_id) +Java_hdf_hdf5lib_H5_H5Aiterate_1by_1name(JNIEnv *env, jclass clss, jlong grp_id, jstring name, jint idx_type, + jint order, jlong idx, jobject callback_op, jobject op_data, + jlong access_id) { - const char *objName = NULL; - cb_wrapper wrapper = { callback_op, op_data }; + const char *objName = NULL; + cb_wrapper wrapper = {callback_op, op_data}; hsize_t start_idx = (hsize_t)idx; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -2263,7 +2265,9 @@ Java_hdf_hdf5lib_H5_H5Aiterate_1by_1name PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Aiterate_by_name: object name not pinned"); - if ((status = H5Aiterate_by_name((hid_t)grp_id, objName, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t*)&start_idx, (H5A_operator2_t)H5A_iterate_cb, (void*)&wrapper, (hid_t)access_id)) < 0) + if ((status = H5Aiterate_by_name((hid_t)grp_id, objName, (H5_index_t)idx_type, (H5_iter_order_t)order, + (hsize_t *)&start_idx, (H5A_operator2_t)H5A_iterate_cb, (void *)&wrapper, + (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: |