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-rw-r--r--java/src/jni/h5dImp.c705
1 files changed, 363 insertions, 342 deletions
diff --git a/java/src/jni/h5dImp.c b/java/src/jni/h5dImp.c
index 5500847..73b252a 100644
--- a/java/src/jni/h5dImp.c
+++ b/java/src/jni/h5dImp.c
@@ -6,7 +6,7 @@
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -44,28 +44,30 @@ typedef struct _cb_wrapper {
/* Local Prototypes */
/********************/
-static herr_t H5DreadVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf);
-static herr_t H5DreadVL_str(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf);
-static herr_t H5DwriteVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf);
-static herr_t H5DwriteVL_str(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf);
+static herr_t H5DreadVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid,
+ hid_t xfer_plist_id, jobjectArray buf);
+static herr_t H5DreadVL_str(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid,
+ hid_t xfer_plist_id, jobjectArray buf);
+static herr_t H5DwriteVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid,
+ hid_t xfer_plist_id, jobjectArray buf);
+static herr_t H5DwriteVL_str(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid,
+ hid_t xfer_plist_id, jobjectArray buf);
/********************/
/* Local Macros */
/********************/
-
/*
* Class: hdf_hdf5lib_H5
* Method: _H5Dcreate
* Signature: (JLjava/lang/String;JJJ)J
*/
JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5__1H5Dcreate
- (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong type_id,
- jlong space_id, jlong create_plist_id)
+Java_hdf_hdf5lib_H5__1H5Dcreate(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong type_id,
+ jlong space_id, jlong create_plist_id)
{
const char *dsetName = NULL;
- hid_t dset_id = H5I_INVALID_HID;
+ hid_t dset_id = H5I_INVALID_HID;
UNUSED(clss);
@@ -74,7 +76,8 @@ Java_hdf_hdf5lib_H5__1H5Dcreate
PIN_JAVA_STRING(ENVONLY, name, dsetName, NULL, "H5Dcreate: dataset name not pinned");
- if ((dset_id = H5Dcreate2((hid_t)loc_id, dsetName, (hid_t)type_id, (hid_t)space_id, H5P_DEFAULT, (hid_t)create_plist_id, H5P_DEFAULT)) < 0)
+ if ((dset_id = H5Dcreate2((hid_t)loc_id, dsetName, (hid_t)type_id, (hid_t)space_id, H5P_DEFAULT,
+ (hid_t)create_plist_id, H5P_DEFAULT)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
@@ -90,11 +93,10 @@ done:
* Signature: (JLjava/lang/String;)J
*/
JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5__1H5Dopen
- (JNIEnv *env, jclass clss, jlong loc_id, jstring name)
+Java_hdf_hdf5lib_H5__1H5Dopen(JNIEnv *env, jclass clss, jlong loc_id, jstring name)
{
const char *dsetName = NULL;
- hid_t dset_id = H5I_INVALID_HID;
+ hid_t dset_id = H5I_INVALID_HID;
UNUSED(clss);
@@ -119,8 +121,7 @@ done:
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5__1H5Dget_1space
- (JNIEnv *env, jclass clss, jlong dataset_id)
+Java_hdf_hdf5lib_H5__1H5Dget_1space(JNIEnv *env, jclass clss, jlong dataset_id)
{
hid_t retVal = H5I_INVALID_HID;
@@ -139,8 +140,7 @@ done:
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5__1H5Dget_1type
- (JNIEnv *env, jclass clss, jlong dataset_id)
+Java_hdf_hdf5lib_H5__1H5Dget_1type(JNIEnv *env, jclass clss, jlong dataset_id)
{
hid_t retVal = H5I_INVALID_HID;
@@ -159,8 +159,7 @@ done:
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5__1H5Dget_1create_1plist
- (JNIEnv *env, jclass clss, jlong dataset_id)
+Java_hdf_hdf5lib_H5__1H5Dget_1create_1plist(JNIEnv *env, jclass clss, jlong dataset_id)
{
hid_t retVal = H5I_INVALID_HID;
@@ -179,14 +178,14 @@ done:
* Signature: (JJJJJ[BZ)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Dread
- (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
- jlong file_space_id, jlong xfer_plist_id, jbyteArray buf, jboolean isCriticalPinning)
+Java_hdf_hdf5lib_H5_H5Dread(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
+ jlong file_space_id, jlong xfer_plist_id, jbyteArray buf,
+ jboolean isCriticalPinning)
{
- jboolean readBufIsCopy;
- htri_t data_class;
- jbyte *readBuf = NULL;
- herr_t status = FAIL;
+ jboolean readBufIsCopy;
+ htri_t data_class;
+ jbyte * readBuf = NULL;
+ herr_t status = FAIL;
UNUSED(clss);
@@ -207,14 +206,15 @@ Java_hdf_hdf5lib_H5_H5Dread
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread: variable length type not supported");
if (isCriticalPinning) {
- PIN_BYTE_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread: read buffer not critically pinned");
+ PIN_BYTE_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy,
+ "H5Dread: read buffer not critically pinned");
}
else {
PIN_BYTE_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread: read buffer not pinned");
}
- if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, readBuf)) < 0)
+ if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id,
+ (hid_t)xfer_plist_id, readBuf)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
@@ -236,14 +236,14 @@ done:
* Signature: (JJJJJ[BZ)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Dwrite
- (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
- jlong file_space_id, jlong xfer_plist_id, jbyteArray buf, jboolean isCriticalPinning)
+Java_hdf_hdf5lib_H5_H5Dwrite(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id,
+ jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, jbyteArray buf,
+ jboolean isCriticalPinning)
{
- jboolean writeBufIsCopy;
- htri_t data_class;
- jbyte *writeBuf = NULL;
- herr_t status = FAIL;
+ jboolean writeBufIsCopy;
+ htri_t data_class;
+ jbyte * writeBuf = NULL;
+ herr_t status = FAIL;
UNUSED(clss);
@@ -264,14 +264,15 @@ Java_hdf_hdf5lib_H5_H5Dwrite
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite: variable length type not supported");
if (isCriticalPinning) {
- PIN_BYTE_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite: write buffer not critically pinned");
+ PIN_BYTE_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy,
+ "H5Dwrite: write buffer not critically pinned");
}
else {
PIN_BYTE_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite: write buffer not pinned");
}
- if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, writeBuf)) < 0)
+ if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id,
+ (hid_t)xfer_plist_id, writeBuf)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
@@ -293,8 +294,7 @@ done:
* Signature: (J)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5__1H5Dclose
- (JNIEnv *env, jclass clss, jlong dataset_id)
+Java_hdf_hdf5lib_H5__1H5Dclose(JNIEnv *env, jclass clss, jlong dataset_id)
{
herr_t retVal = FAIL;
@@ -313,8 +313,7 @@ done:
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Dget_1storage_1size
- (JNIEnv *env, jclass clss, jlong dataset_id)
+Java_hdf_hdf5lib_H5_H5Dget_1storage_1size(JNIEnv *env, jclass clss, jlong dataset_id)
{
hsize_t retVal = 0;
@@ -336,16 +335,24 @@ done:
* Signature: (JJJ[B)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Dvlen_1reclaim
- (JNIEnv *env, jclass clss, jlong type_id, jlong space_id,
- jlong xfer_plist_id, jbyteArray buf)
+Java_hdf_hdf5lib_H5_H5Dvlen_1reclaim(JNIEnv *env, jclass clss, jlong type_id, jlong space_id,
+ jlong xfer_plist_id, jbyteArray buf)
{
- jboolean vlenBufIsCopy;
- jbyte *vlenBuf = NULL;
- herr_t status = FAIL;
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+ jboolean vlenBufIsCopy;
+ jbyte * vlenBuf = NULL;
+#endif
+ herr_t status = FAIL;
UNUSED(clss);
+#ifdef H5_NO_DEPRECATED_SYMBOLS
+ UNUSED(type_id);
+ UNUSED(space_id);
+ UNUSED(xfer_plist_id);
+ UNUSED(buf);
+ H5_UNIMPLEMENTED(ENVONLY, "H5Dvlen_reclaim: not implemented");
+#else
if (NULL == buf)
H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dvlen_reclaim: buffer is NULL");
@@ -353,10 +360,13 @@ Java_hdf_hdf5lib_H5_H5Dvlen_1reclaim
if ((status = H5Dvlen_reclaim((hid_t)type_id, (hid_t)space_id, (hid_t)xfer_plist_id, vlenBuf)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
+#endif
done:
+#ifndef H5_NO_DEPRECATED_SYMBOLS
if (vlenBuf)
UNPIN_BYTE_ARRAY(ENVONLY, buf, vlenBuf, (status < 0) ? JNI_ABORT : 0);
+#endif
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Dvlen_1reclaim */
@@ -367,14 +377,14 @@ done:
* Signature: (JJJJJ[SZ)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Dread_1short
- (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
- jlong file_space_id, jlong xfer_plist_id, jshortArray buf, jboolean isCriticalPinning)
+Java_hdf_hdf5lib_H5_H5Dread_1short(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id,
+ jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id,
+ jshortArray buf, jboolean isCriticalPinning)
{
- jboolean readBufIsCopy;
- jshort *readBuf = NULL;
- htri_t data_class;
- herr_t status = FAIL;
+ jboolean readBufIsCopy;
+ jshort * readBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
UNUSED(clss);
@@ -395,14 +405,15 @@ Java_hdf_hdf5lib_H5_H5Dread_1short
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_short: variable length type not supported");
if (isCriticalPinning) {
- PIN_SHORT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_short: read buffer not critically pinned");
+ PIN_SHORT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy,
+ "H5Dread_short: read buffer not critically pinned");
}
else {
PIN_SHORT_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_short: read buffer not pinned");
}
- if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, readBuf)) < 0)
+ if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id,
+ (hid_t)xfer_plist_id, readBuf)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
@@ -424,14 +435,14 @@ done:
* Signature: (JJJJJ[SZ)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Dwrite_1short
- (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
- jlong file_space_id, jlong xfer_plist_id, jshortArray buf, jboolean isCriticalPinning)
+Java_hdf_hdf5lib_H5_H5Dwrite_1short(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id,
+ jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id,
+ jshortArray buf, jboolean isCriticalPinning)
{
- jboolean writeBufIsCopy;
- jshort *writeBuf = NULL;
- htri_t data_class;
- herr_t status = FAIL;
+ jboolean writeBufIsCopy;
+ jshort * writeBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
UNUSED(clss);
@@ -452,14 +463,15 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1short
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_short: variable length type not supported");
if (isCriticalPinning) {
- PIN_SHORT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_short: write buffer not critically pinned");
+ PIN_SHORT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy,
+ "H5Dwrite_short: write buffer not critically pinned");
}
else {
PIN_SHORT_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_short: write buffer not pinned");
}
- if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, writeBuf)) < 0)
+ if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id,
+ (hid_t)xfer_plist_id, writeBuf)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
@@ -481,14 +493,14 @@ done:
* Signature: (JJJJJ[IZ)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Dread_1int
- (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
- jlong file_space_id, jlong xfer_plist_id, jintArray buf, jboolean isCriticalPinning)
+Java_hdf_hdf5lib_H5_H5Dread_1int(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id,
+ jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, jintArray buf,
+ jboolean isCriticalPinning)
{
- jboolean readBufIsCopy;
- htri_t data_class;
- jint *readBuf = NULL;
- herr_t status = FAIL;
+ jboolean readBufIsCopy;
+ htri_t data_class;
+ jint * readBuf = NULL;
+ herr_t status = FAIL;
UNUSED(clss);
@@ -509,14 +521,15 @@ Java_hdf_hdf5lib_H5_H5Dread_1int
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_int: variable length type not supported");
if (isCriticalPinning) {
- PIN_INT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_int: read buffer not critically pinned");
+ PIN_INT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy,
+ "H5Dread_int: read buffer not critically pinned");
}
else {
PIN_INT_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_int: read buffer not pinned");
}
- if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, readBuf)) < 0)
+ if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id,
+ (hid_t)xfer_plist_id, readBuf)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
@@ -538,14 +551,14 @@ done:
* Signature: (JJJJJ[IZ)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Dwrite_1int
- (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
- jlong file_space_id, jlong xfer_plist_id, jintArray buf, jboolean isCriticalPinning)
+Java_hdf_hdf5lib_H5_H5Dwrite_1int(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id,
+ jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, jintArray buf,
+ jboolean isCriticalPinning)
{
- jboolean writeBufIsCopy;
- htri_t data_class;
- jint *writeBuf = NULL;
- herr_t status = FAIL;
+ jboolean writeBufIsCopy;
+ htri_t data_class;
+ jint * writeBuf = NULL;
+ herr_t status = FAIL;
UNUSED(clss);
@@ -566,14 +579,15 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1int
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_int: variable length type not supported");
if (isCriticalPinning) {
- PIN_INT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_int: write buffer not critically pinned");
+ PIN_INT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy,
+ "H5Dwrite_int: write buffer not critically pinned");
}
else {
PIN_INT_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_int: write buffer not pinned");
}
- if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, writeBuf)) < 0)
+ if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id,
+ (hid_t)xfer_plist_id, writeBuf)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
@@ -595,14 +609,14 @@ done:
* Signature: (JJJJJ[JZ)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Dread_1long
- (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
- jlong file_space_id, jlong xfer_plist_id, jlongArray buf, jboolean isCriticalPinning)
+Java_hdf_hdf5lib_H5_H5Dread_1long(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id,
+ jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id,
+ jlongArray buf, jboolean isCriticalPinning)
{
- jboolean readBufIsCopy;
- htri_t data_class;
- jlong *readBuf = NULL;
- herr_t status = FAIL;
+ jboolean readBufIsCopy;
+ htri_t data_class;
+ jlong * readBuf = NULL;
+ herr_t status = FAIL;
UNUSED(clss);
@@ -623,14 +637,15 @@ Java_hdf_hdf5lib_H5_H5Dread_1long
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_long: variable length type not supported");
if (isCriticalPinning) {
- PIN_LONG_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_long: read buffer not critically pinned");
+ PIN_LONG_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy,
+ "H5Dread_long: read buffer not critically pinned");
}
else {
PIN_LONG_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_long: read buffer not pinned");
}
- if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, readBuf)) < 0)
+ if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id,
+ (hid_t)xfer_plist_id, readBuf)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
@@ -652,14 +667,14 @@ done:
* Signature: (JJJJJ[JZ)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Dwrite_1long
- (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
- jlong file_space_id, jlong xfer_plist_id, jlongArray buf, jboolean isCriticalPinning)
+Java_hdf_hdf5lib_H5_H5Dwrite_1long(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id,
+ jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id,
+ jlongArray buf, jboolean isCriticalPinning)
{
- jboolean writeBufIsCopy;
- htri_t data_class;
- jlong *writeBuf = NULL;
- herr_t status = FAIL;
+ jboolean writeBufIsCopy;
+ htri_t data_class;
+ jlong * writeBuf = NULL;
+ herr_t status = FAIL;
UNUSED(clss);
@@ -680,14 +695,15 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1long
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_long: variable length type not supported");
if (isCriticalPinning) {
- PIN_LONG_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_long: write buffer not critically pinned");
+ PIN_LONG_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy,
+ "H5Dwrite_long: write buffer not critically pinned");
}
else {
PIN_LONG_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_long: write buffer not pinned");
}
- if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, writeBuf)) < 0)
+ if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id,
+ (hid_t)xfer_plist_id, writeBuf)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
@@ -709,14 +725,14 @@ done:
* Signature: (JJJJJ[FZ)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Dread_1float
- (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
- jlong file_space_id, jlong xfer_plist_id, jfloatArray buf, jboolean isCriticalPinning)
+Java_hdf_hdf5lib_H5_H5Dread_1float(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id,
+ jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id,
+ jfloatArray buf, jboolean isCriticalPinning)
{
- jboolean readBufIsCopy;
- htri_t data_class;
- jfloat *readBuf = NULL;
- herr_t status = FAIL;
+ jboolean readBufIsCopy;
+ htri_t data_class;
+ jfloat * readBuf = NULL;
+ herr_t status = FAIL;
UNUSED(clss);
@@ -737,14 +753,15 @@ Java_hdf_hdf5lib_H5_H5Dread_1float
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_float: variable length type not supported");
if (isCriticalPinning) {
- PIN_FLOAT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_float: read buffer not critically pinned");
+ PIN_FLOAT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy,
+ "H5Dread_float: read buffer not critically pinned");
}
else {
PIN_FLOAT_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_float: read buffer not pinned");
}
- if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, readBuf)) < 0)
+ if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id,
+ (hid_t)xfer_plist_id, readBuf)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
@@ -766,14 +783,14 @@ done:
* Signature: (JJJJJ[FZ)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Dwrite_1float
- (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
- jlong file_space_id, jlong xfer_plist_id, jfloatArray buf, jboolean isCriticalPinning)
+Java_hdf_hdf5lib_H5_H5Dwrite_1float(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id,
+ jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id,
+ jfloatArray buf, jboolean isCriticalPinning)
{
- jboolean writeBufIsCopy;
- htri_t data_class;
- jfloat *writeBuf = NULL;
- herr_t status = FAIL;
+ jboolean writeBufIsCopy;
+ htri_t data_class;
+ jfloat * writeBuf = NULL;
+ herr_t status = FAIL;
UNUSED(clss);
@@ -794,14 +811,15 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1float
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_float: variable length type not supported");
if (isCriticalPinning) {
- PIN_FLOAT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_float: write buffer not critically pinned");
+ PIN_FLOAT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy,
+ "H5Dwrite_float: write buffer not critically pinned");
}
else {
PIN_FLOAT_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_float: write buffer not pinned");
}
- if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, writeBuf)) < 0)
+ if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id,
+ (hid_t)xfer_plist_id, writeBuf)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
@@ -823,14 +841,14 @@ done:
* Signature: (JJJJJ[DZ)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Dread_1double
- (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
- jlong file_space_id, jlong xfer_plist_id, jdoubleArray buf, jboolean isCriticalPinning)
+Java_hdf_hdf5lib_H5_H5Dread_1double(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id,
+ jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id,
+ jdoubleArray buf, jboolean isCriticalPinning)
{
- jboolean readBufIsCopy;
- jdouble *readBuf = NULL;
- htri_t data_class;
- herr_t status = FAIL;
+ jboolean readBufIsCopy;
+ jdouble *readBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
UNUSED(clss);
@@ -851,14 +869,15 @@ Java_hdf_hdf5lib_H5_H5Dread_1double
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_double: variable length type not supported");
if (isCriticalPinning) {
- PIN_DOUBLE_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_double: read buffer not critically pinned");
+ PIN_DOUBLE_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy,
+ "H5Dread_double: read buffer not critically pinned");
}
else {
PIN_DOUBLE_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_double: read buffer not pinned");
}
- if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, readBuf)) < 0)
+ if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id,
+ (hid_t)xfer_plist_id, readBuf)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
@@ -880,14 +899,14 @@ done:
* Signature: (JJJJJ[DZ)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Dwrite_1double
- (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
- jlong file_space_id, jlong xfer_plist_id, jdoubleArray buf, jboolean isCriticalPinning)
+Java_hdf_hdf5lib_H5_H5Dwrite_1double(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id,
+ jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id,
+ jdoubleArray buf, jboolean isCriticalPinning)
{
- jboolean writeBufIsCopy;
- jdouble *writeBuf = NULL;
- htri_t data_class;
- herr_t status = FAIL;
+ jboolean writeBufIsCopy;
+ jdouble *writeBuf = NULL;
+ htri_t data_class;
+ herr_t status = FAIL;
UNUSED(clss);
@@ -908,14 +927,15 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1double
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_double: variable length type not supported");
if (isCriticalPinning) {
- PIN_DOUBLE_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_double: write buffer not critically pinned");
+ PIN_DOUBLE_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy,
+ "H5Dwrite_double: write buffer not critically pinned");
}
else {
PIN_DOUBLE_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_double: write buffer not pinned");
}
- if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, writeBuf)) < 0)
+ if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id,
+ (hid_t)xfer_plist_id, writeBuf)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
@@ -937,17 +957,17 @@ done:
* Signature: (JJJJJ[Ljava/lang/String;)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Dread_1string
- (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
- jlong file_space_id, jlong xfer_plist_id, jobjectArray j_buf)
+Java_hdf_hdf5lib_H5_H5Dread_1string(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id,
+ jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id,
+ jobjectArray j_buf)
{
- jstring jstr;
- size_t str_len;
- size_t pos;
- jsize i, n;
- char *c_buf = NULL;
- char *cstr = NULL;
- herr_t status = FAIL;
+ jstring jstr;
+ size_t str_len;
+ size_t pos;
+ jsize i, n;
+ char * c_buf = NULL;
+ char * cstr = NULL;
+ herr_t status = FAIL;
UNUSED(clss);
@@ -962,23 +982,24 @@ Java_hdf_hdf5lib_H5_H5Dread_1string
if (!(str_len = H5Tget_size((hid_t)mem_type_id)))
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (cstr = (char *) HDmalloc(str_len + 1)))
- H5_JNI_FATAL_ERROR(ENVONLY, "H5Dread_string: memory allocation failed");
+ if (NULL == (cstr = (char *)HDmalloc(str_len + 1)))
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dread_string: memory allocation failed");
- if (NULL == (c_buf = (char *) HDmalloc((size_t)n * str_len)))
- H5_JNI_FATAL_ERROR(ENVONLY, "H5Dread_string: memory allocation failed");
+ if (NULL == (c_buf = (char *)HDmalloc((size_t)n * str_len)))
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dread_string: memory allocation failed");
- if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, c_buf)) < 0)
+ if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id,
+ (hid_t)xfer_plist_id, c_buf)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
for (i = 0, pos = 0; i < n; i++) {
- HDmemcpy(cstr, c_buf+pos, str_len);
+ HDmemcpy(cstr, c_buf + pos, str_len);
cstr[str_len] = '\0';
if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, cstr))) {
CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
- H5_JNI_FATAL_ERROR(ENVONLY, "H5Dread_string: out of memory - unable to construct string from UTF characters");
+ H5_OUT_OF_MEMORY_ERROR(
+ ENVONLY, "H5Dread_string: out of memory - unable to construct string from UTF characters");
}
ENVPTR->SetObjectArrayElement(ENVONLY, j_buf, i, jstr);
@@ -1004,15 +1025,15 @@ done:
* Signature: (JJJJJ[Ljava/lang/String;)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Dwrite_1string
- (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
- jlong file_space_id, jlong xfer_plist_id, jobjectArray j_buf)
+Java_hdf_hdf5lib_H5_H5Dwrite_1string(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id,
+ jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id,
+ jobjectArray j_buf)
{
const char *utf8 = NULL;
jstring obj;
size_t i, str_len;
jsize n;
- char *c_buf = NULL;
+ char * c_buf = NULL;
herr_t status = FAIL;
UNUSED(clss);
@@ -1028,11 +1049,11 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1string
if (!(str_len = H5Tget_size((hid_t)mem_type_id)))
H5_LIBRARY_ERROR(ENVONLY);
- if (NULL == (c_buf = (char *) HDmalloc((size_t)n * str_len)))
- H5_JNI_FATAL_ERROR(ENVONLY, "H5Dwrite_string: memory allocation failed");
+ if (NULL == (c_buf = (char *)HDmalloc((size_t)n * str_len)))
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dwrite_string: memory allocation failed");
- for (i = 0; i < (size_t) n; i++) {
- if (NULL == (obj = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)j_buf, (jsize) i))) {
+ for (i = 0; i < (size_t)n; i++) {
+ if (NULL == (obj = (jstring)ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)j_buf, (jsize)i))) {
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
/*
@@ -1057,8 +1078,8 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1string
ENVPTR->DeleteLocalRef(ENVONLY, obj);
} /* end for */
- if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
- (hid_t)file_space_id, (hid_t)xfer_plist_id, c_buf)) < 0)
+ if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id,
+ (hid_t)xfer_plist_id, c_buf)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
@@ -1076,17 +1097,16 @@ done:
* Signature: (JJJJJ[Ljava/lang/String;)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5DreadVL
- (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
- jlong file_space_id, jlong xfer_plist_id, jobjectArray buf)
+Java_hdf_hdf5lib_H5_H5DreadVL(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id,
+ jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, jobjectArray buf)
{
H5T_class_t type_class;
- htri_t isStr = 0;
- htri_t isVlenStr = 0;
- htri_t isComplex = 0;
+ htri_t isStr = 0;
+ htri_t isVlenStr = 0;
+ htri_t isComplex = 0;
htri_t isComplex2 = 0;
hid_t nested_tid = H5I_INVALID_HID;
- herr_t status = FAIL;
+ herr_t status = FAIL;
UNUSED(clss);
@@ -1106,7 +1126,7 @@ Java_hdf_hdf5lib_H5_H5DreadVL
if ((num_members = H5Tget_nmembers(mem_type_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- for (i = 0; i < (unsigned) num_members; i++) {
+ for (i = 0; i < (unsigned)num_members; i++) {
if ((nested_tid = H5Tget_member_type((hid_t)mem_type_id, i)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -1128,13 +1148,13 @@ Java_hdf_hdf5lib_H5_H5DreadVL
}
if (!isStr || isComplex || isVlenStr) {
- if ((status = H5DreadVL_asstr(env, (hid_t)dataset_id, (hid_t)mem_type_id,
- (hid_t)mem_space_id, (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0)
+ if ((status = H5DreadVL_asstr(env, (hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0)
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
}
else if (isStr) {
- if ((status = H5DreadVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id,
- (hid_t)mem_space_id, (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0)
+ if ((status = H5DreadVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0)
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
}
@@ -1151,28 +1171,29 @@ done:
* buffer in turn.
*/
static herr_t
-H5DreadVL_str
- (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf)
+H5DreadVL_str(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id,
+ jobjectArray buf)
{
- jstring jstr;
- jsize i, n;
- char **strs = NULL;
- herr_t status = FAIL;
+ jstring jstr;
+ jsize i, n;
+ char ** strs = NULL;
+ herr_t status = FAIL;
if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) {
CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5DreadVL_str: buf length < 0");
}
- if (NULL == (strs = (char **) HDcalloc((size_t)n, sizeof(char *))))
- H5_JNI_FATAL_ERROR(ENVONLY, "H5DreadVL_str: failed to allocate variable length string read buffer");
+ if (NULL == (strs = (char **)HDcalloc((size_t)n, sizeof(char *))))
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY,
+ "H5DreadVL_str: failed to allocate variable length string read buffer");
if ((status = H5Dread(did, tid, mem_sid, file_sid, xfer_plist_id, strs)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
/*
* When repeatedly reading a dataset with a large number of strs (e.g., 1,000,000 strings),
- * H5Dvlen_reclaim() may crash on Windows because the Java GC will not be able to collect
+ * H5Treclaim() may crash on Windows because the Java GC will not be able to collect
* free space in time. Instead, we use "H5free_memory(strs[i])" to free individual strings
* once done.
*/
@@ -1209,19 +1230,19 @@ done:
* in the output buffer in turn.
*/
static herr_t
-H5DreadVL_asstr
- (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf)
+H5DreadVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id,
+ jobjectArray buf)
{
- H5T_class_t tclass;
- jstring jstr;
- h5str_t h5str;
- hbool_t close_mem_space = FALSE;
- size_t typeSize;
- size_t i;
- hid_t mem_space = mem_sid;
- jsize n;
- void *readBuf = NULL;
- herr_t status = FAIL;
+ H5T_class_t tclass;
+ jstring jstr;
+ h5str_t h5str;
+ hbool_t close_mem_space = FALSE;
+ size_t typeSize;
+ size_t i;
+ hid_t mem_space = mem_sid;
+ jsize n;
+ void * readBuf = NULL;
+ herr_t status = FAIL;
HDmemset(&h5str, 0, sizeof(h5str_t));
@@ -1230,7 +1251,7 @@ H5DreadVL_asstr
if (mem_space == H5S_ALL) {
/*
- * Retrieve a valid dataspace for H5Dvlen_reclaim().
+ * Retrieve a valid dataspace for H5Treclaim().
*/
if ((mem_space = H5Dget_space(did)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -1251,7 +1272,7 @@ H5DreadVL_asstr
H5_LIBRARY_ERROR(ENVONLY);
if (NULL == (readBuf = HDcalloc((size_t)n, typeSize)))
- H5_JNI_FATAL_ERROR(ENVONLY, "H5DreadVL_asstr: failed to allocate read buffer");
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5DreadVL_asstr: failed to allocate read buffer");
if ((status = H5Dread(did, tid, mem_sid, file_sid, xfer_plist_id, readBuf)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -1260,22 +1281,22 @@ H5DreadVL_asstr
h5str_new(&h5str, 4 * typeSize);
if (!h5str.s)
- H5_JNI_FATAL_ERROR(ENVONLY, "H5DreadVL_asstr: failed to allocate buffer");
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5DreadVL_asstr: failed to allocate buffer");
if ((tclass = H5Tget_class(tid)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
/* Convert each element to a char string */
- for (i = 0; i < (size_t) n; i++) {
+ for (i = 0; i < (size_t)n; i++) {
h5str.s[0] = '\0';
- if (!h5str_sprintf(ENVONLY, &h5str, did, tid, &(((char *) readBuf)[i * typeSize]), typeSize, 0))
+ if (!h5str_sprintf(ENVONLY, &h5str, did, tid, &(((char *)readBuf)[i * typeSize]), 0))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s)))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
- ENVPTR->SetObjectArrayElement(ENVONLY, buf, (jsize) i, jstr);
+ ENVPTR->SetObjectArrayElement(ENVONLY, buf, (jsize)i, jstr);
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
ENVPTR->DeleteLocalRef(ENVONLY, jstr);
@@ -1285,7 +1306,7 @@ done:
if (h5str.s)
h5str_free(&h5str);
if (readBuf) {
- H5Dvlen_reclaim(tid, mem_space, xfer_plist_id, readBuf);
+ H5Treclaim(tid, mem_space, xfer_plist_id, readBuf);
HDfree(readBuf);
}
if (close_mem_space)
@@ -1307,12 +1328,12 @@ done:
* Signature: (JJJJJ[Ljava/lang/String;)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Dread_1VLStrings
- (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
- jlong file_space_id, jlong xfer_plist_id, jobjectArray buf)
+Java_hdf_hdf5lib_H5_H5Dread_1VLStrings(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id,
+ jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id,
+ jobjectArray buf)
{
htri_t isVlenStr = 0;
- herr_t status = FAIL;
+ herr_t status = FAIL;
UNUSED(clss);
@@ -1323,8 +1344,8 @@ Java_hdf_hdf5lib_H5_H5Dread_1VLStrings
H5_LIBRARY_ERROR(ENVONLY);
if (isVlenStr) {
- if ((status = H5DreadVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id,
- (hid_t)mem_space_id, (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0)
+ if ((status = H5DreadVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
}
else
@@ -1340,17 +1361,16 @@ done:
* Signature: (JJJJJ[Ljava/lang/String;)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5DwriteVL
- (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
- jlong file_space_id, jlong xfer_plist_id, jobjectArray buf)
+Java_hdf_hdf5lib_H5_H5DwriteVL(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id,
+ jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, jobjectArray buf)
{
H5T_class_t type_class;
- htri_t isStr = 0;
- htri_t isVlenStr = 0;
- htri_t isComplex = 0;
+ htri_t isStr = 0;
+ htri_t isVlenStr = 0;
+ htri_t isComplex = 0;
htri_t isComplex2 = 0;
hid_t nested_tid = H5I_INVALID_HID;
- herr_t status = FAIL;
+ herr_t status = FAIL;
UNUSED(clss);
@@ -1370,7 +1390,7 @@ Java_hdf_hdf5lib_H5_H5DwriteVL
if ((num_members = H5Tget_nmembers(mem_type_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
- for (i = 0; i < (unsigned) num_members; i++) {
+ for (i = 0; i < (unsigned)num_members; i++) {
if ((nested_tid = H5Tget_member_type((hid_t)mem_type_id, i)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -1392,13 +1412,13 @@ Java_hdf_hdf5lib_H5_H5DwriteVL
}
if (!isStr || isComplex || isVlenStr) {
- if ((status = H5DwriteVL_asstr(env, (hid_t)dataset_id, (hid_t)mem_type_id,
- (hid_t)mem_space_id, (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0)
+ if ((status = H5DwriteVL_asstr(env, (hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0)
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
}
else if (isStr) {
- if ((status = H5DwriteVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id,
- (hid_t)mem_space_id, (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0)
+ if ((status = H5DwriteVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0)
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
}
@@ -1414,28 +1434,29 @@ done:
* The buffer of C-strings is then written to the HDF5 dataset specified.
*/
static herr_t
-H5DwriteVL_str
- (JNIEnv *env, hid_t dataset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t xfer_plist_id, jobjectArray buf)
+H5DwriteVL_str(JNIEnv *env, hid_t dataset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id,
+ hid_t xfer_plist_id, jobjectArray buf)
{
- const char *utf8 = NULL;
- jstring obj;
- jsize size;
- jsize i;
- char **writeBuf = NULL;
- herr_t status = FAIL;
-
- if ((size = ENVPTR->GetArrayLength(ENVONLY, (jarray) buf)) < 0) {
+ const char *utf8 = NULL;
+ jstring obj;
+ jsize size;
+ jsize i;
+ char ** writeBuf = NULL;
+ herr_t status = FAIL;
+
+ if ((size = ENVPTR->GetArrayLength(ENVONLY, (jarray)buf)) < 0) {
CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE);
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5DwriteVL_str: buf length < 0");
}
- if (NULL == (writeBuf = (char **) HDcalloc((size_t)size + 1, sizeof(char *))))
- H5_JNI_FATAL_ERROR(ENVONLY, "H5DwriteVL_str: failed to allocate variable length string write buffer");
+ if (NULL == (writeBuf = (char **)HDcalloc((size_t)size + 1, sizeof(char *))))
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY,
+ "H5DwriteVL_str: failed to allocate variable length string write buffer");
for (i = 0; i < size; ++i) {
jsize length;
- if (NULL == (obj = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)buf, i))) {
+ if (NULL == (obj = (jstring)ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)buf, i))) {
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
/*
@@ -1450,8 +1471,8 @@ H5DwriteVL_str
PIN_JAVA_STRING(ENVONLY, obj, utf8, NULL, "H5DwriteVL_str: string not pinned");
- if (NULL == (writeBuf[i] = (char *) HDmalloc((size_t)length + 1)))
- H5_JNI_FATAL_ERROR(ENVONLY, "H5DwriteVL_str: failed to allocate string buffer");
+ if (NULL == (writeBuf[i] = (char *)HDmalloc((size_t)length + 1)))
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5DwriteVL_str: failed to allocate string buffer");
HDstrncpy(writeBuf[i], utf8, (size_t)length + 1);
writeBuf[i][length] = '\0';
@@ -1462,7 +1483,8 @@ H5DwriteVL_str
ENVPTR->DeleteLocalRef(ENVONLY, obj);
} /* end for (i = 0; i < size; ++i) */
- if ((status = H5Dwrite(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, writeBuf)) < 0)
+ if ((status = H5Dwrite(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, writeBuf)) <
+ 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
@@ -1486,25 +1508,25 @@ done:
* elements is then written to the HDF5 dataset.
*/
static herr_t
-H5DwriteVL_asstr
- (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf)
+H5DwriteVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id,
+ jobjectArray buf)
{
- const char *utf8 = NULL;
- jstring obj;
+ const char *utf8 = NULL;
+ jstring obj = NULL;
hbool_t close_mem_space = FALSE;
size_t typeSize;
size_t i;
hid_t mem_space = mem_sid;
jsize n;
- void *writeBuf = NULL;
- herr_t status = FAIL;
+ void * writeBuf = NULL;
+ herr_t status = FAIL;
if (mem_space == H5S_ALL) {
mem_space = file_sid;
if (mem_space == H5S_ALL) {
/*
- * Retrieve a valid dataspace for H5Dvlen_reclaim().
+ * Retrieve a valid dataspace for H5Treclaim().
*/
if ((mem_space = H5Dget_space(did)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
@@ -1524,16 +1546,16 @@ H5DwriteVL_asstr
H5_LIBRARY_ERROR(ENVONLY);
if (NULL == (writeBuf = HDcalloc((size_t)n, typeSize)))
- H5_JNI_FATAL_ERROR(ENVONLY, "H5AwriteVL_asstr: failed to allocate write buffer");
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5AwriteVL_asstr: failed to allocate write buffer");
- for (i = 0; i < (size_t) n; ++i) {
- if (NULL == (obj = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)buf, (jsize) i))) {
+ for (i = 0; i < (size_t)n; ++i) {
+ if (NULL == (obj = (jstring)ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)buf, (jsize)i))) {
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
/*
* If the string object was NULL, skip it.
*/
- HDmemset(&(((char *) writeBuf)[i * typeSize]), 0, typeSize);
+ HDmemset(&(((char *)writeBuf)[i * typeSize]), 0, typeSize);
continue;
}
@@ -1549,7 +1571,7 @@ H5DwriteVL_asstr
* one before destroying it with h5str_convert.
*/
- if (!h5str_convert(ENVONLY, (char **) &utf8, did, tid, &(((char *) writeBuf)[i * typeSize]), 0))
+ if (!h5str_convert(ENVONLY, (char **)&utf8, did, tid, &(((char *)writeBuf)[i * typeSize]), 0))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
@@ -1565,7 +1587,7 @@ done:
if (utf8)
UNPIN_JAVA_STRING(ENVONLY, obj, utf8);
if (writeBuf) {
- H5Dvlen_reclaim(tid, mem_space, xfer_plist_id, writeBuf);
+ H5Treclaim(tid, mem_space, xfer_plist_id, writeBuf);
HDfree(writeBuf);
}
if (close_mem_space)
@@ -1580,12 +1602,12 @@ done:
* Signature: (JJJJJ[Ljava/lang/String;)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Dwrite_1VLStrings
- (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
- jlong file_space_id, jlong xfer_plist_id, jobjectArray buf)
+Java_hdf_hdf5lib_H5_H5Dwrite_1VLStrings(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id,
+ jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id,
+ jobjectArray buf)
{
- htri_t isVlenStr = 0;
- herr_t status = FAIL;
+ htri_t isVlenStr = 0;
+ herr_t status = FAIL;
UNUSED(clss);
@@ -1596,8 +1618,8 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1VLStrings
H5_LIBRARY_ERROR(ENVONLY);
if (isVlenStr) {
- if ((status = H5DwriteVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id,
- (hid_t)mem_space_id, (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0)
+ if ((status = H5DwriteVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id,
+ (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
} /* end if */
else
@@ -1613,16 +1635,15 @@ done:
* Signature: (JJJJJ[Ljava/lang/String;)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Dread_1reg_1ref
- (JNIEnv *env, jclass clss,
- jlong dataset_id, jlong mem_type_id, jlong mem_space_id,
- jlong file_space_id, jlong xfer_plist_id, jobjectArray buf)
+Java_hdf_hdf5lib_H5_H5Dread_1reg_1ref(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id,
+ jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id,
+ jobjectArray buf)
{
- hdset_reg_ref_t *ref_data = NULL;
- h5str_t h5str;
- jstring jstr;
- jsize i, n;
- herr_t status = FAIL;
+ H5R_ref_t *ref_data = NULL;
+ h5str_t h5str;
+ jstring jstr;
+ jsize i, n;
+ herr_t status = FAIL;
UNUSED(clss);
@@ -1633,21 +1654,22 @@ Java_hdf_hdf5lib_H5_H5Dread_1reg_1ref
H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_reg_ref: buf length < 0");
}
- if (NULL == (ref_data = (hdset_reg_ref_t *) HDcalloc(1, (size_t)n * sizeof(hdset_reg_ref_t))))
- H5_JNI_FATAL_ERROR(ENVONLY, "H5Dread_reg_ref: failed to allocate read buffer");
+ if (NULL == (ref_data = (H5R_ref_t *)HDcalloc(1, (size_t)n * sizeof(H5R_ref_t))))
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dread_reg_ref: failed to allocate read buffer");
- if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id, xfer_plist_id, ref_data)) < 0)
+ if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id,
+ xfer_plist_id, ref_data)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
h5str_new(&h5str, 1024);
if (!h5str.s)
- H5_JNI_FATAL_ERROR(ENVONLY, "H5Dread_reg_ref: failed to allocate buffer");
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dread_reg_ref: failed to allocate buffer");
for (i = 0; i < n; i++) {
h5str.s[0] = '\0';
- if (!h5str_sprintf(ENVONLY, &h5str, (hid_t)dataset_id, (hid_t)mem_type_id, &ref_data[i], 0, 0))
+ if (!h5str_sprintf(ENVONLY, &h5str, (hid_t)dataset_id, (hid_t)mem_type_id, (void *)&ref_data[i], 0))
CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE);
if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s)))
@@ -1674,12 +1696,12 @@ done:
* Signature: (JLjava/lang/String;JJJJJ)J
*/
JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5__1H5Dcreate2
- (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong type_id,
- jlong space_id, jlong link_plist_id, jlong create_plist_id, jlong access_plist_id)
+Java_hdf_hdf5lib_H5__1H5Dcreate2(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong type_id,
+ jlong space_id, jlong link_plist_id, jlong create_plist_id,
+ jlong access_plist_id)
{
const char *dsetName = NULL;
- hid_t dset_id = H5I_INVALID_HID;
+ hid_t dset_id = H5I_INVALID_HID;
UNUSED(clss);
@@ -1688,7 +1710,8 @@ Java_hdf_hdf5lib_H5__1H5Dcreate2
PIN_JAVA_STRING(ENVONLY, name, dsetName, NULL, "H5Dcreate2: dataset name not pinned");
- if ((dset_id = H5Dcreate2((hid_t)loc_id, dsetName, (hid_t)type_id, (hid_t)space_id, (hid_t)link_plist_id, (hid_t)create_plist_id, (hid_t)access_plist_id)) < 0)
+ if ((dset_id = H5Dcreate2((hid_t)loc_id, dsetName, (hid_t)type_id, (hid_t)space_id, (hid_t)link_plist_id,
+ (hid_t)create_plist_id, (hid_t)access_plist_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
@@ -1704,11 +1727,10 @@ done:
* Signature: (JLjava/lang/String;J)J
*/
JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5__1H5Dopen2
- (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_plist)
+Java_hdf_hdf5lib_H5__1H5Dopen2(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_plist)
{
const char *dsetName = NULL;
- hid_t dset_id = H5I_INVALID_HID;
+ hid_t dset_id = H5I_INVALID_HID;
UNUSED(clss);
@@ -1733,14 +1755,15 @@ done:
* Signature: (JJJJJ)J
*/
JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5__1H5Dcreate_1anon
- (JNIEnv *env, jclass clss, jlong loc_id, jlong type_id, jlong space_id, jlong dcpl_id, jlong dapl_id)
+Java_hdf_hdf5lib_H5__1H5Dcreate_1anon(JNIEnv *env, jclass clss, jlong loc_id, jlong type_id, jlong space_id,
+ jlong dcpl_id, jlong dapl_id)
{
hid_t dset_id = H5I_INVALID_HID;
UNUSED(clss);
- if ((dset_id = H5Dcreate_anon((hid_t)loc_id, (hid_t)type_id, (hid_t)space_id, (hid_t)dcpl_id, (hid_t)dapl_id)) < 0)
+ if ((dset_id = H5Dcreate_anon((hid_t)loc_id, (hid_t)type_id, (hid_t)space_id, (hid_t)dcpl_id,
+ (hid_t)dapl_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
@@ -1753,8 +1776,7 @@ done:
* Signature: (J)I;
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Dget_1space_1status
- (JNIEnv *env, jclass clss, jlong loc_id)
+Java_hdf_hdf5lib_H5_H5Dget_1space_1status(JNIEnv *env, jclass clss, jlong loc_id)
{
H5D_space_status_t space_status = H5D_SPACE_STATUS_ERROR;
@@ -1773,8 +1795,7 @@ done:
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Dget_1access_1plist
- (JNIEnv *env, jclass clss, jlong loc_id)
+Java_hdf_hdf5lib_H5_H5Dget_1access_1plist(JNIEnv *env, jclass clss, jlong loc_id)
{
hid_t retVal = H5I_INVALID_HID;
@@ -1793,8 +1814,7 @@ done:
* Signature: (J)J
*/
JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Dget_1offset
- (JNIEnv *env, jclass clss, jlong loc_id)
+Java_hdf_hdf5lib_H5_H5Dget_1offset(JNIEnv *env, jclass clss, jlong loc_id)
{
haddr_t offset = HADDR_UNDEF;
@@ -1813,8 +1833,8 @@ done:
* Signature: (JJJ)J
*/
JNIEXPORT jlong JNICALL
-Java_hdf_hdf5lib_H5_H5Dvlen_1get_1buf_1size
- (JNIEnv *env, jclass clss, jlong dataset_id, jlong type_id, jlong space_id)
+Java_hdf_hdf5lib_H5_H5Dvlen_1get_1buf_1size(JNIEnv *env, jclass clss, jlong dataset_id, jlong type_id,
+ jlong space_id)
{
hsize_t sz = 0;
@@ -1833,14 +1853,14 @@ done:
* Signature: ([BJ[BJJ)V
*/
JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Dfill
- (JNIEnv *env, jclass clss, jbyteArray fill, jlong fill_type_id, jbyteArray buf, jlong buf_type_id, jlong space_id)
+Java_hdf_hdf5lib_H5_H5Dfill(JNIEnv *env, jclass clss, jbyteArray fill, jlong fill_type_id, jbyteArray buf,
+ jlong buf_type_id, jlong space_id)
{
- jboolean isCopy1;
- jboolean isCopy2;
- herr_t status = FAIL;
- jbyte *fillP = NULL;
- jbyte *buffP = NULL;
+ jboolean isCopy1;
+ jboolean isCopy2;
+ herr_t status = FAIL;
+ jbyte * fillP = NULL;
+ jbyte * buffP = NULL;
UNUSED(clss);
@@ -1853,7 +1873,8 @@ Java_hdf_hdf5lib_H5_H5Dfill
PIN_BYTE_ARRAY(ENVONLY, fill, fillP, &isCopy1, "H5Dfill: fill buffer not pinned");
}
- if ((status = H5Dfill((const void *)fillP, (hid_t)fill_type_id, (void *)buffP, (hid_t)buf_type_id, (hid_t)space_id)) < 0)
+ if ((status = H5Dfill((const void *)fillP, (hid_t)fill_type_id, (void *)buffP, (hid_t)buf_type_id,
+ (hid_t)space_id)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
if (fillP) {
@@ -1874,15 +1895,14 @@ done:
* Signature: (J[J)V
*/
JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Dset_1extent
- (JNIEnv *env, jclass clss, jlong loc_id, jlongArray buf)
+Java_hdf_hdf5lib_H5_H5Dset_1extent(JNIEnv *env, jclass clss, jlong loc_id, jlongArray buf)
{
- jboolean isCopy;
- hsize_t *dims = NULL;
- herr_t status;
- jsize rank;
- jlong *dimsBuf = NULL;
- int i = 0;
+ jboolean isCopy;
+ hsize_t *dims = NULL;
+ herr_t status;
+ jsize rank;
+ jlong * dimsBuf = NULL;
+ int i = 0;
UNUSED(clss);
@@ -1896,8 +1916,8 @@ Java_hdf_hdf5lib_H5_H5Dset_1extent
PIN_LONG_ARRAY(ENVONLY, buf, dimsBuf, &isCopy, "H5Dset_extent: buffer not pinned");
- if (NULL == (dims = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t))))
- H5_JNI_FATAL_ERROR(ENVONLY, "H5Dset_extent: failed to allocate dataset dimension buffer");
+ if (NULL == (dims = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t))))
+ H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dset_extent: failed to allocate dataset dimension buffer");
for (i = 0; i < rank; i++)
dims[i] = (hsize_t)dimsBuf[i];
@@ -1913,18 +1933,18 @@ done:
} /* end Java_hdf_hdf5lib_H5_H5Dset_1extent */
static herr_t
-H5D_iterate_cb
- (void *elem, hid_t elem_id, unsigned ndim, const hsize_t *point, void *cb_data) {
+H5D_iterate_cb(void *elem, hid_t elem_id, unsigned ndim, const hsize_t *point, void *cb_data)
+{
cb_wrapper *wrapper = (cb_wrapper *)cb_data;
jbyteArray elemArray;
jlongArray pointArray;
jmethodID mid;
jobject visit_callback = wrapper->visit_callback;
jclass cls;
- JNIEnv *cbenv = NULL;
+ JNIEnv * cbenv = NULL;
jint status = FAIL;
jsize size;
- void *op_data = (void *)wrapper->op_data;
+ void * op_data = (void *)wrapper->op_data;
if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) {
CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE);
@@ -1934,7 +1954,8 @@ H5D_iterate_cb
if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback)))
CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "([BJI[JLhdf/hdf5lib/callbacks/H5D_iterate_t;)I")))
+ if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback",
+ "([BJI[JLhdf/hdf5lib/callbacks/H5D_iterate_t;)I")))
CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
if (NULL == elem)
@@ -1957,7 +1978,8 @@ H5D_iterate_cb
CBENVPTR->SetLongArrayRegion(CBENVONLY, pointArray, 0, 2, (const jlong *)point);
CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
- status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, (void *)elemArray, elem_id, ndim, pointArray, op_data);
+ status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, (void *)elemArray, elem_id, ndim,
+ pointArray, op_data);
CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE);
CBENVPTR->GetByteArrayRegion(CBENVONLY, elemArray, 0, size, (jbyte *)elem);
@@ -1976,14 +1998,13 @@ done:
* Signature: ([BJJLjava/lang/Object;Ljava/lang/Object;)I
*/
JNIEXPORT jint JNICALL
-Java_hdf_hdf5lib_H5_H5Diterate
- (JNIEnv *env, jclass clss, jbyteArray buf, jlong buf_type, jlong space,
- jobject callback_op, jobject op_data)
+Java_hdf_hdf5lib_H5_H5Diterate(JNIEnv *env, jclass clss, jbyteArray buf, jlong buf_type, jlong space,
+ jobject callback_op, jobject op_data)
{
- cb_wrapper wrapper = { callback_op, op_data };
- jboolean isCopy;
- jbyte *iterBuf = NULL;
- herr_t status = FAIL;
+ cb_wrapper wrapper = {callback_op, op_data};
+ jboolean isCopy;
+ jbyte * iterBuf = NULL;
+ herr_t status = FAIL;
UNUSED(clss);
@@ -1999,12 +2020,14 @@ Java_hdf_hdf5lib_H5_H5Diterate
PIN_BYTE_ARRAY(ENVONLY, buf, iterBuf, &isCopy, "H5Diterate: buffer not pinned");
- if ((status = H5Diterate((void *)iterBuf, (hid_t)buf_type, (hid_t)space, (H5D_operator_t)H5D_iterate_cb, (void *)&wrapper)) < 0)
+ if ((status = H5Diterate((void *)iterBuf, (hid_t)buf_type, (hid_t)space, (H5D_operator_t)H5D_iterate_cb,
+ (void *)&wrapper)) < 0)
H5_LIBRARY_ERROR(ENVONLY);
done:
if (iterBuf)
- UNPIN_BYTE_ARRAY(ENVONLY, buf, iterBuf, (status < 0) ? (JNI_ABORT) : ((isCopy == JNI_TRUE) ? 0 : JNI_ABORT));
+ UNPIN_BYTE_ARRAY(ENVONLY, buf, iterBuf,
+ (status < 0) ? (JNI_ABORT) : ((isCopy == JNI_TRUE) ? 0 : JNI_ABORT));
return (jint)status;
} /* end Java_hdf_hdf5lib_H5_H5Diterate */
@@ -2015,8 +2038,7 @@ done:
* Signature: (J)V
*/
JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Dflush
- (JNIEnv *env, jclass clss, jlong loc_id)
+Java_hdf_hdf5lib_H5_H5Dflush(JNIEnv *env, jclass clss, jlong loc_id)
{
UNUSED(clss);
@@ -2033,8 +2055,7 @@ done:
* Signature: (J)V
*/
JNIEXPORT void JNICALL
-Java_hdf_hdf5lib_H5_H5Drefresh
- (JNIEnv *env, jclass clss, jlong loc_id)
+Java_hdf_hdf5lib_H5_H5Drefresh(JNIEnv *env, jclass clss, jlong loc_id)
{
UNUSED(clss);
generated by cgit v0.12 at 2025-07-06 14:21:04 (GMT)