diff options
Diffstat (limited to 'java/src/jni/h5fImp.c')
| -rw-r--r-- | java/src/jni/h5fImp.c | 180 |
1 files changed, 80 insertions, 100 deletions
diff --git a/java/src/jni/h5fImp.c b/java/src/jni/h5fImp.c index 4fd6807..e59a69e 100644 --- a/java/src/jni/h5fImp.c +++ b/java/src/jni/h5fImp.c @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -39,11 +39,10 @@ extern "C" { * Signature: (Ljava/lang/String;IJ)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Fopen - (JNIEnv *env, jclass clss, jstring name, jint flags, jlong access_id) +Java_hdf_hdf5lib_H5__1H5Fopen(JNIEnv *env, jclass clss, jstring name, jint flags, jlong access_id) { const char *fileName = NULL; - hid_t status = H5I_INVALID_HID; + hid_t status = H5I_INVALID_HID; UNUSED(clss); @@ -68,11 +67,11 @@ done: * Signature: (Ljava/lang/String;IJJ)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Fcreate - (JNIEnv *env, jclass clss, jstring name, jint flags, jlong create_id, jlong access_id) +Java_hdf_hdf5lib_H5__1H5Fcreate(JNIEnv *env, jclass clss, jstring name, jint flags, jlong create_id, + jlong access_id) { const char *fileName = NULL; - hid_t status = H5I_INVALID_HID; + hid_t status = H5I_INVALID_HID; UNUSED(clss); @@ -97,8 +96,7 @@ done: * Signature: (JI)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Fflush - (JNIEnv *env, jclass clss, jlong object_id, jint scope) +Java_hdf_hdf5lib_H5_H5Fflush(JNIEnv *env, jclass clss, jlong object_id, jint scope) { herr_t retVal = FAIL; @@ -117,12 +115,11 @@ done: * Signature: (J)Ljava/lang/String; */ JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1name - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5_H5Fget_1name(JNIEnv *env, jclass clss, jlong file_id) { - jstring str = NULL; - ssize_t buf_size; - char *namePtr = NULL; + jstring str = NULL; + ssize_t buf_size; + char * namePtr = NULL; UNUSED(clss); @@ -130,8 +127,8 @@ Java_hdf_hdf5lib_H5_H5Fget_1name if ((buf_size = H5Fget_name((hid_t)file_id, NULL, 0)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (NULL == (namePtr = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Fget_name: malloc failed"); + if (NULL == (namePtr = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Fget_name: malloc failed"); if ((H5Fget_name((hid_t)file_id, namePtr, (size_t)buf_size + 1)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -153,18 +150,19 @@ done: * Signature: (Ljava/lang/String;)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Fis_1hdf5 - (JNIEnv *env, jclass clss, jstring name) +Java_hdf_hdf5lib_H5_H5Fis_1hdf5(JNIEnv *env, jclass clss, jstring name) { +#ifndef H5_NO_DEPRECATED_SYMBOLS const char *fileName = NULL; - htri_t bval = JNI_FALSE; +#endif + htri_t bval = JNI_FALSE; UNUSED(clss); #ifdef H5_NO_DEPRECATED_SYMBOLS + UNUSED(name); H5_UNIMPLEMENTED(ENVONLY, "H5Fis_hdf5: not implemented"); -#endif - +#else if (NULL == name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Fis_hdf5: file name is NULL"); @@ -174,10 +172,13 @@ Java_hdf_hdf5lib_H5_H5Fis_1hdf5 H5_LIBRARY_ERROR(ENVONLY); bval = (bval > 0) ? JNI_TRUE : JNI_FALSE; +#endif done: +#ifndef H5_NO_DEPRECATED_SYMBOLS if (fileName) UNPIN_JAVA_STRING(ENVONLY, name, fileName); +#endif return (jboolean)bval; } /* end Java_hdf_hdf5lib_H5_H5Fis_1hdf5 */ @@ -188,11 +189,10 @@ done: * Signature: (Ljava/lang/String;J)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Fis_1accessible - (JNIEnv *env, jclass clss, jstring name, jlong file_id) +Java_hdf_hdf5lib_H5_H5Fis_1accessible(JNIEnv *env, jclass clss, jstring name, jlong file_id) { const char *fileName = NULL; - htri_t bval = JNI_FALSE; + htri_t bval = JNI_FALSE; UNUSED(clss); @@ -219,8 +219,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Fget_1create_1plist - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5__1H5Fget_1create_1plist(JNIEnv *env, jclass clss, jlong file_id) { hid_t retVal = H5I_INVALID_HID; @@ -239,8 +238,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Fget_1access_1plist - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5__1H5Fget_1access_1plist(JNIEnv *env, jclass clss, jlong file_id) { hid_t retVal = H5I_INVALID_HID; @@ -259,8 +257,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1intent - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5_H5Fget_1intent(JNIEnv *env, jclass clss, jlong file_id) { unsigned intent = 0; @@ -279,8 +276,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1fileno - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5_H5Fget_1fileno(JNIEnv *env, jclass clss, jlong file_id) { unsigned long fileno = 0; @@ -299,8 +295,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5__1H5Fclose - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5__1H5Fclose(JNIEnv *env, jclass clss, jlong file_id) { herr_t status = FAIL; @@ -319,11 +314,11 @@ done: * Signature: (JLjava/lang/String;JJ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Fmount - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong child_id, jlong plist_id) +Java_hdf_hdf5lib_H5_H5Fmount(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong child_id, + jlong plist_id) { const char *fileName = NULL; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -348,11 +343,10 @@ done: * Signature: (JLjava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Funmount - (JNIEnv *env, jclass clss, jlong loc_id, jstring name) +Java_hdf_hdf5lib_H5_H5Funmount(JNIEnv *env, jclass clss, jlong loc_id, jstring name) { const char *fileName = NULL; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -377,8 +371,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1freespace - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5_H5Fget_1freespace(JNIEnv *env, jclass clss, jlong file_id) { hssize_t ret_val = -1; @@ -397,8 +390,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Freopen - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5__1H5Freopen(JNIEnv *env, jclass clss, jlong file_id) { hid_t retVal = H5I_INVALID_HID; @@ -417,16 +409,15 @@ done: * Signature: (JIJ[J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1obj_1ids - (JNIEnv *env, jclass clss, jlong file_id, jint types, jlong maxObjs, - jlongArray obj_id_list) +Java_hdf_hdf5lib_H5_H5Fget_1obj_1ids(JNIEnv *env, jclass clss, jlong file_id, jint types, jlong maxObjs, + jlongArray obj_id_list) { - jboolean isCopy; - ssize_t ret_val = -1; - size_t i; - jsize rank; - jlong *obj_id_listP = NULL; - hid_t *id_list = NULL; + jboolean isCopy; + ssize_t ret_val = -1; + size_t i; + jsize rank; + jlong * obj_id_listP = NULL; + hid_t * id_list = NULL; UNUSED(clss); @@ -440,8 +431,8 @@ Java_hdf_hdf5lib_H5_H5Fget_1obj_1ids H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Fget_obj_ids: obj_id_list length < 0"); } - if (NULL == (id_list = (hid_t *) HDmalloc((size_t)rank * sizeof(hid_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Fget_obj_ids: malloc failed"); + if (NULL == (id_list = (hid_t *)HDmalloc((size_t)rank * sizeof(hid_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Fget_obj_ids: malloc failed"); if ((ret_val = H5Fget_obj_ids((hid_t)file_id, (unsigned int)types, (size_t)maxObjs, id_list)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -465,8 +456,7 @@ done: * Signature: (JI)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1obj_1count - (JNIEnv *env, jclass clss, jlong file_id, jint types) +Java_hdf_hdf5lib_H5_H5Fget_1obj_1count(JNIEnv *env, jclass clss, jlong file_id, jint types) { ssize_t ret_val = -1; @@ -485,8 +475,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1filesize - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5_H5Fget_1filesize(JNIEnv *env, jclass clss, jlong file_id) { hsize_t size = 0; @@ -496,7 +485,7 @@ Java_hdf_hdf5lib_H5_H5Fget_1filesize H5_LIBRARY_ERROR(ENVONLY); done: - return (jlong) size; + return (jlong)size; } /* end Java_hdf_hdf5lib_H5_H5Fget_1filesize */ /* @@ -505,8 +494,7 @@ done: * Signature: (J)D */ JNIEXPORT jdouble JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1mdc_1hit_1rate - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5_H5Fget_1mdc_1hit_1rate(JNIEnv *env, jclass clss, jlong file_id) { double rate = 0.0; @@ -525,14 +513,13 @@ done: * Signature: (J[J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1mdc_1size - (JNIEnv *env, jclass clss, jlong file_id, jlongArray metadata_cache) +Java_hdf_hdf5lib_H5_H5Fget_1mdc_1size(JNIEnv *env, jclass clss, jlong file_id, jlongArray metadata_cache) { - jboolean isCopy; - size_t max_size = 0, min_clean_size = 0, cur_size = 0; - jlong *metadata_cache_ptr = NULL; - jsize size = 0; - int cur_num_entries = -1; + jboolean isCopy; + size_t max_size = 0, min_clean_size = 0, cur_size = 0; + jlong * metadata_cache_ptr = NULL; + jsize size = 0; + int cur_num_entries = -1; UNUSED(clss); @@ -550,7 +537,8 @@ Java_hdf_hdf5lib_H5_H5Fget_1mdc_1size if (H5Fget_mdc_size((hid_t)file_id, &max_size, &min_clean_size, &cur_size, &cur_num_entries) < 0) H5_LIBRARY_ERROR(ENVONLY); - PIN_LONG_ARRAY(ENVONLY, metadata_cache, metadata_cache_ptr, &isCopy, "H5Fget_mdc_size: metadata_cache array not pinned"); + PIN_LONG_ARRAY(ENVONLY, metadata_cache, metadata_cache_ptr, &isCopy, + "H5Fget_mdc_size: metadata_cache array not pinned"); metadata_cache_ptr[0] = (jlong)max_size; metadata_cache_ptr[1] = (jlong)min_clean_size; @@ -569,8 +557,7 @@ done: * Signature: (J)Lhdf/hdf5lib/structs/H5F_info2_t; */ JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1info - (JNIEnv *env, jclass clss, jlong obj_id) +Java_hdf_hdf5lib_H5_H5Fget_1info(JNIEnv *env, jclass clss, jlong obj_id) { H5F_info2_t finfo; jobject ihinfobuf; @@ -599,7 +586,8 @@ Java_hdf_hdf5lib_H5_H5Fget_1info args[7].j = (jlong)finfo.sohm.hdr_size; args[8].l = ihinfobuf; - CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5F_info2_t", "(IJJIJJIJLhdf/hdf5lib/structs/H5_ih_info_t;)V", args, ret_obj); + CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5F_info2_t", + "(IJJIJJIJLhdf/hdf5lib/structs/H5_ih_info_t;)V", args, ret_obj); done: return ret_obj; @@ -611,8 +599,7 @@ done: * Signature: (J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Freset_1mdc_1hit_1rate_1stats - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5_H5Freset_1mdc_1hit_1rate_1stats(JNIEnv *env, jclass clss, jlong file_id) { UNUSED(clss); @@ -629,8 +616,7 @@ done: * Signature: (J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Fclear_1elink_1file_1cache - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5_H5Fclear_1elink_1file_1cache(JNIEnv *env, jclass clss, jlong file_id) { UNUSED(clss); @@ -647,8 +633,7 @@ done: * Signature: (J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Fstart_1swmr_1write - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5_H5Fstart_1swmr_1write(JNIEnv *env, jclass clss, jlong file_id) { UNUSED(clss); @@ -665,8 +650,7 @@ done: * Signature: (J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Fstart_1mdc_1logging - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5_H5Fstart_1mdc_1logging(JNIEnv *env, jclass clss, jlong file_id) { UNUSED(clss); @@ -683,8 +667,7 @@ done: * Signature: (J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Fstop_1mdc_1logging - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5_H5Fstop_1mdc_1logging(JNIEnv *env, jclass clss, jlong file_id) { UNUSED(clss); @@ -701,14 +684,14 @@ done: * Signature: (J[Z)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1mdc_1logging_1status - (JNIEnv *env, jclass clss, jlong file_id, jbooleanArray mdc_logging_status) +Java_hdf_hdf5lib_H5_H5Fget_1mdc_1logging_1status(JNIEnv *env, jclass clss, jlong file_id, + jbooleanArray mdc_logging_status) { - jboolean *mdc_logging_status_ptr = NULL; - jboolean isCopy; - hbool_t is_enabled; - hbool_t is_currently_logging; - jsize size; + jboolean *mdc_logging_status_ptr = NULL; + jboolean isCopy; + hbool_t is_enabled; + hbool_t is_currently_logging; + jsize size; UNUSED(clss); @@ -726,7 +709,8 @@ Java_hdf_hdf5lib_H5_H5Fget_1mdc_1logging_1status if (H5Fget_mdc_logging_status((hid_t)file_id, &is_enabled, &is_currently_logging) < 0) H5_LIBRARY_ERROR(ENVONLY); - PIN_BOOL_ARRAY(ENVONLY, mdc_logging_status, mdc_logging_status_ptr, &isCopy, "H5Fget_mdc_logging_status: mdc_logging_status array not pinned"); + PIN_BOOL_ARRAY(ENVONLY, mdc_logging_status, mdc_logging_status_ptr, &isCopy, + "H5Fget_mdc_logging_status: mdc_logging_status array not pinned"); mdc_logging_status_ptr[0] = (jboolean)is_enabled; mdc_logging_status_ptr[1] = (jboolean)is_currently_logging; @@ -744,8 +728,7 @@ done: * Signature: (JZ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Fset_1dset_1no_1attrs_1hint -(JNIEnv *env, jclass clss, jlong file_id, jboolean minimize) +Java_hdf_hdf5lib_H5_H5Fset_1dset_1no_1attrs_1hint(JNIEnv *env, jclass clss, jlong file_id, jboolean minimize) { hbool_t minimize_val; herr_t retVal = FAIL; @@ -767,10 +750,9 @@ done: * Signature: (J)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1dset_1no_1attrs_1hint -(JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5_H5Fget_1dset_1no_1attrs_1hint(JNIEnv *env, jclass clss, jlong file_id) { - jboolean bval = JNI_FALSE; + jboolean bval = JNI_FALSE; hbool_t minimize = FALSE; UNUSED(clss); @@ -779,7 +761,7 @@ Java_hdf_hdf5lib_H5_H5Fget_1dset_1no_1attrs_1hint H5_LIBRARY_ERROR(ENVONLY); if (minimize == TRUE) - bval = JNI_TRUE; + bval = JNI_TRUE; done: return bval; @@ -791,8 +773,7 @@ done: * Signature: (JII)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Fset_1libver_1bounds - (JNIEnv *env, jclass clss, jlong file_id, jint low, jint high) +Java_hdf_hdf5lib_H5_H5Fset_1libver_1bounds(JNIEnv *env, jclass clss, jlong file_id, jint low, jint high) { herr_t retVal = FAIL; @@ -805,7 +786,6 @@ done: return; } /* end Java_hdf_hdf5lib_H5_H5Fset_1libver_1bounds */ - #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ |