diff options
Diffstat (limited to 'java/src/jni/h5pDCPLImp.c')
| -rw-r--r-- | java/src/jni/h5pDCPLImp.c | 470 |
1 files changed, 225 insertions, 245 deletions
diff --git a/java/src/jni/h5pDCPLImp.c b/java/src/jni/h5pDCPLImp.c index f5bbcb1..df9c4eb 100644 --- a/java/src/jni/h5pDCPLImp.c +++ b/java/src/jni/h5pDCPLImp.c @@ -37,8 +37,7 @@ extern "C" { * Signature: (JI)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1layout - (JNIEnv *env, jclass clss, jlong plist, jint layout) +Java_hdf_hdf5lib_H5_H5Pset_1layout(JNIEnv *env, jclass clss, jlong plist, jint layout) { herr_t retVal = FAIL; @@ -57,8 +56,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1layout - (JNIEnv *env, jclass clss, jlong plist) +Java_hdf_hdf5lib_H5_H5Pget_1layout(JNIEnv *env, jclass clss, jlong plist) { H5D_layout_t retVal = H5D_LAYOUT_ERROR; @@ -77,18 +75,17 @@ done: * Signature: (JI[B)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1chunk - (JNIEnv *env, jclass clss, jlong plist, jint ndims, jbyteArray dim) +Java_hdf_hdf5lib_H5_H5Pset_1chunk(JNIEnv *env, jclass clss, jlong plist, jint ndims, jbyteArray dim) { - jboolean isCopy; - hsize_t *da = NULL; - hsize_t *lp = NULL; - size_t i; - size_t rank; - jsize arrLen; - jbyte *theArray = NULL; - jlong *jlp = NULL; - herr_t status = FAIL; + jboolean isCopy; + hsize_t *da = NULL; + hsize_t *lp = NULL; + size_t i; + size_t rank; + jsize arrLen; + jbyte * theArray = NULL; + jlong * jlp = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -102,13 +99,13 @@ Java_hdf_hdf5lib_H5_H5Pset_1chunk H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_chunk: dim array length < 0"); } - rank = (size_t) arrLen / sizeof(jlong); - if (rank < (size_t) ndims) + rank = (size_t)arrLen / sizeof(jlong); + if (rank < (size_t)ndims) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_chunk: dims array rank < ndims"); PIN_BYTE_ARRAY(ENVONLY, dim, theArray, &isCopy, "H5Pset_chunk: dim array not pinned"); - if (NULL == (da = lp = (hsize_t *) HDmalloc(rank * sizeof(hsize_t)))) + if (NULL == (da = lp = (hsize_t *)HDmalloc(rank * sizeof(hsize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pset_chunk: memory allocation failed"); jlp = (jlong *)theArray; @@ -136,15 +133,14 @@ done: * Signature: (JI[J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1chunk - (JNIEnv *env, jclass clss, jlong plist, jint max_ndims, jlongArray dims) +Java_hdf_hdf5lib_H5_H5Pget_1chunk(JNIEnv *env, jclass clss, jlong plist, jint max_ndims, jlongArray dims) { - jboolean isCopy; - hsize_t *da = NULL; - jlong *theArray = NULL; - jsize arrLen; - int i; - herr_t status = FAIL; + jboolean isCopy; + hsize_t *da = NULL; + jlong * theArray = NULL; + jsize arrLen; + int i; + herr_t status = FAIL; UNUSED(clss); @@ -160,7 +156,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1chunk PIN_LONG_ARRAY(ENVONLY, dims, theArray, &isCopy, "H5Pget_chunk: input dims not pinned"); - if (NULL == (da = (hsize_t *) HDmalloc((size_t)max_ndims * sizeof(hsize_t)))) + if (NULL == (da = (hsize_t *)HDmalloc((size_t)max_ndims * sizeof(hsize_t)))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_chunk: memory allocation failed"); if ((status = H5Pget_chunk((hid_t)plist, (int)max_ndims, da)) < 0) @@ -184,8 +180,7 @@ done: * Signature: (JI)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1chunk_1opts - (JNIEnv *env, jclass clss, jlong dcpl_id, jint opts) +Java_hdf_hdf5lib_H5_H5Pset_1chunk_1opts(JNIEnv *env, jclass clss, jlong dcpl_id, jint opts) { herr_t retVal = FAIL; @@ -204,8 +199,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1chunk_1opts - (JNIEnv *env, jclass clss, jlong dcpl_id) +Java_hdf_hdf5lib_H5_H5Pget_1chunk_1opts(JNIEnv *env, jclass clss, jlong dcpl_id) { unsigned opts = 0; @@ -224,8 +218,7 @@ done: * Signature: (JZ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1dset_1no_1attrs_1hint -(JNIEnv *env, jclass clss, jlong dcpl_id, jboolean minimize) +Java_hdf_hdf5lib_H5_H5Pset_1dset_1no_1attrs_1hint(JNIEnv *env, jclass clss, jlong dcpl_id, jboolean minimize) { hbool_t minimize_val; herr_t retVal = FAIL; @@ -247,11 +240,10 @@ done: * Signature: (J)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1dset_1no_1attrs_1hint -(JNIEnv *env, jclass clss, jlong dcpl_id) +Java_hdf_hdf5lib_H5_H5Pget_1dset_1no_1attrs_1hint(JNIEnv *env, jclass clss, jlong dcpl_id) { hbool_t minimize = FALSE; - jboolean bval = JNI_FALSE; + jboolean bval = JNI_FALSE; UNUSED(clss); @@ -271,8 +263,7 @@ done: * Signature: (JI)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1deflate - (JNIEnv *env, jclass clss, jlong plist, jint level) +Java_hdf_hdf5lib_H5_H5Pset_1deflate(JNIEnv *env, jclass clss, jlong plist, jint level) { herr_t retVal = FAIL; @@ -291,12 +282,12 @@ done: * Signature: (JJ[B)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fill_1value - (JNIEnv *env, jclass clss, jlong plist_id, jlong type_id, jbyteArray value) +Java_hdf_hdf5lib_H5_H5Pset_1fill_1value(JNIEnv *env, jclass clss, jlong plist_id, jlong type_id, + jbyteArray value) { - jboolean isCopy; - jbyte *byteP = NULL; - herr_t status = FAIL; + jboolean isCopy; + jbyte * byteP = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -324,12 +315,12 @@ done: * Signature: (JJ[B)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1fill_1value - (JNIEnv *env, jclass clss, jlong plist_id, jlong type_id, jbyteArray value) +Java_hdf_hdf5lib_H5_H5Pget_1fill_1value(JNIEnv *env, jclass clss, jlong plist_id, jlong type_id, + jbyteArray value) { - jboolean isCopy; - herr_t status = FAIL; - jbyte *byteP = NULL; + jboolean isCopy; + herr_t status = FAIL; + jbyte * byteP = NULL; UNUSED(clss); @@ -354,13 +345,12 @@ done: * Signature: (J[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pfill_1value_1defined - (JNIEnv *env, jclass clss, jlong plist, jintArray status) +Java_hdf_hdf5lib_H5_H5Pfill_1value_1defined(JNIEnv *env, jclass clss, jlong plist, jintArray status) { - H5D_fill_value_t value = H5D_FILL_VALUE_ERROR; - jboolean isCopy; - jint *theArray = NULL; - herr_t retVal = FAIL; + H5D_fill_value_t value = H5D_FILL_VALUE_ERROR; + jboolean isCopy; + jint * theArray = NULL; + herr_t retVal = FAIL; UNUSED(clss); @@ -387,8 +377,7 @@ done: * Signature: (JI)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fill_1time - (JNIEnv *env, jclass clss, jlong plist, jint fill_time) +Java_hdf_hdf5lib_H5_H5Pset_1fill_1time(JNIEnv *env, jclass clss, jlong plist, jint fill_time) { herr_t retVal = FAIL; @@ -407,13 +396,12 @@ done: * Signature: (J[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1fill_1time - (JNIEnv *env, jclass clss, jlong plist, jintArray fill_time) +Java_hdf_hdf5lib_H5_H5Pget_1fill_1time(JNIEnv *env, jclass clss, jlong plist, jintArray fill_time) { - H5D_fill_time_t time = H5D_FILL_TIME_ERROR; - jboolean isCopy; - jint *theArray = NULL; - herr_t retVal = FAIL; + H5D_fill_time_t time = H5D_FILL_TIME_ERROR; + jboolean isCopy; + jint * theArray = NULL; + herr_t retVal = FAIL; UNUSED(clss); @@ -440,8 +428,7 @@ done: * Signature: (JI)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1alloc_1time - (JNIEnv *env, jclass clss, jlong plist, jint alloc_time) +Java_hdf_hdf5lib_H5_H5Pset_1alloc_1time(JNIEnv *env, jclass clss, jlong plist, jint alloc_time) { herr_t retVal = FAIL; @@ -460,13 +447,12 @@ done: * Signature: (J[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1alloc_1time - (JNIEnv *env, jclass clss, jlong plist, jintArray alloc_time) +Java_hdf_hdf5lib_H5_H5Pget_1alloc_1time(JNIEnv *env, jclass clss, jlong plist, jintArray alloc_time) { - H5D_alloc_time_t time = H5D_ALLOC_TIME_ERROR; - jboolean isCopy; - jint *theArray = NULL; - herr_t retVal = FAIL; + H5D_alloc_time_t time = H5D_ALLOC_TIME_ERROR; + jboolean isCopy; + jint * theArray = NULL; + herr_t retVal = FAIL; UNUSED(clss); @@ -475,7 +461,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1alloc_1time PIN_INT_ARRAY(ENVONLY, alloc_time, theArray, &isCopy, "H5Pget_alloc_time: alloc_time not pinned"); - if ((retVal = H5Pget_alloc_time((hid_t)plist, &time)) < 0) + if ((retVal = H5Pget_alloc_time((hid_t)plist, &time)) < 0) H5_LIBRARY_ERROR(ENVONLY); theArray[0] = time; @@ -493,26 +479,25 @@ done: * Signature: (JIIJ[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1filter - (JNIEnv *env, jclass clss, jlong plist, jint filter, jint flags, - jlong cd_nelmts, jintArray cd_values) +Java_hdf_hdf5lib_H5_H5Pset_1filter(JNIEnv *env, jclass clss, jlong plist, jint filter, jint flags, + jlong cd_nelmts, jintArray cd_values) { - jboolean isCopy; - jint *theArray = NULL; - herr_t status = FAIL; + jboolean isCopy; + jint * theArray = NULL; + herr_t status = FAIL; UNUSED(clss); if (NULL == cd_values) { - if ((status = H5Pset_filter((hid_t)plist, (H5Z_filter_t)filter, - (unsigned int)flags, (size_t)cd_nelmts, NULL)) < 0) + if ((status = H5Pset_filter((hid_t)plist, (H5Z_filter_t)filter, (unsigned int)flags, + (size_t)cd_nelmts, NULL)) < 0) H5_LIBRARY_ERROR(ENVONLY); } else { PIN_INT_ARRAY(ENVONLY, cd_values, theArray, &isCopy, "H5Pset_filter: input array not pinned"); - if ((status = H5Pset_filter((hid_t)plist, (H5Z_filter_t)filter, - (unsigned int)flags, (size_t)cd_nelmts, (const unsigned int *)theArray)) < 0) + if ((status = H5Pset_filter((hid_t)plist, (H5Z_filter_t)filter, (unsigned int)flags, + (size_t)cd_nelmts, (const unsigned int *)theArray)) < 0) H5_LIBRARY_ERROR(ENVONLY); } @@ -529,8 +514,7 @@ done: * Signature: (J)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Pall_1filters_1avail - (JNIEnv *env, jclass clss, jlong dcpl_id) +Java_hdf_hdf5lib_H5_H5Pall_1filters_1avail(JNIEnv *env, jclass clss, jlong dcpl_id) { htri_t bval = JNI_FALSE; @@ -551,8 +535,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1nfilters - (JNIEnv *env, jclass clss, jlong plist) +Java_hdf_hdf5lib_H5_H5Pget_1nfilters(JNIEnv *env, jclass clss, jlong plist) { int retVal = -1; @@ -571,17 +554,17 @@ done: * Signature: (JI[I[J[IJ[Ljava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1filter - (JNIEnv *env, jclass clss, jlong plist, jint filter_number, jintArray flags, - jlongArray cd_nelmts, jintArray cd_values, jlong namelen, jobjectArray name) +Java_hdf_hdf5lib_H5_H5Pget_1filter(JNIEnv *env, jclass clss, jlong plist, jint filter_number, jintArray flags, + jlongArray cd_nelmts, jintArray cd_values, jlong namelen, + jobjectArray name) { - jboolean isCopy; - jstring str; - jint *flagsArray = NULL; - jlong *cd_nelmtsArray = NULL; - jint *cd_valuesArray = NULL; - char *filter = NULL; - herr_t status = FAIL; + jboolean isCopy; + jstring str; + jint * flagsArray = NULL; + jlong * cd_nelmtsArray = NULL; + jint * cd_valuesArray = NULL; + char * filter = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -594,23 +577,22 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter if (NULL == cd_values) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter: cd_values is NULL"); - if (NULL == (filter = (char *) HDmalloc(sizeof(char) * (size_t)namelen))) + if (NULL == (filter = (char *)HDmalloc(sizeof(char) * (size_t)namelen))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_filter: memory allocation failed"); PIN_INT_ARRAY(ENVONLY, flags, flagsArray, &isCopy, "H5Pget_filter: flags array not pinned"); PIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, &isCopy, "H5Pget_filter: nelmts array not pinned"); PIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesArray, &isCopy, "H5Pget_filter: elmts array not pinned"); - /* direct cast (size_t *)variable fails on 32-bit environment */ { unsigned int filter_config; long long cd_nelmts_temp = *cd_nelmtsArray; - size_t cd_nelmts_t = (size_t) cd_nelmts_temp; + size_t cd_nelmts_t = (size_t)cd_nelmts_temp; - if ((status = H5Pget_filter2((hid_t)plist, (unsigned)filter_number, - (unsigned int *)flagsArray, &cd_nelmts_t, (unsigned int *)cd_valuesArray, - (size_t)namelen, filter, &filter_config)) < 0) + if ((status = H5Pget_filter2((hid_t)plist, (unsigned)filter_number, (unsigned int *)flagsArray, + &cd_nelmts_t, (unsigned int *)cd_valuesArray, (size_t)namelen, filter, + &filter_config)) < 0) H5_LIBRARY_ERROR(ENVONLY); filter[namelen - 1] = '\0'; @@ -620,7 +602,8 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, filter))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_filter: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, "H5Pget_filter: out of memory - unable to construct string from UTF characters"); } ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, (jobject)str); @@ -645,19 +628,18 @@ done: * Signature: (JI[I[J[IJ[Ljava/lang/String;[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1filter2 - (JNIEnv *env, jclass clss, jlong plist, jint filter_number, - jintArray flags, jlongArray cd_nelmts, jintArray cd_values, jlong namelen, - jobjectArray name, jintArray filter_config) +Java_hdf_hdf5lib_H5_H5Pget_1filter2(JNIEnv *env, jclass clss, jlong plist, jint filter_number, + jintArray flags, jlongArray cd_nelmts, jintArray cd_values, jlong namelen, + jobjectArray name, jintArray filter_config) { - jboolean isCopy; - jstring str; - jint *flagsArray = NULL; - jlong *cd_nelmtsArray = NULL; - jint *cd_valuesArray = NULL; - jint *filter_configArray = NULL; - char *filter = NULL; - herr_t status = FAIL; + jboolean isCopy; + jstring str; + jint * flagsArray = NULL; + jlong * cd_nelmtsArray = NULL; + jint * cd_valuesArray = NULL; + jint * filter_configArray = NULL; + char * filter = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -670,21 +652,22 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter2 if (NULL == filter_config) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter2: filter_config is NULL"); - if (NULL == (filter = (char *) HDmalloc(sizeof(char) * (size_t)namelen))) + if (NULL == (filter = (char *)HDmalloc(sizeof(char) * (size_t)namelen))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_filter2: memory allocation failed"); PIN_INT_ARRAY(ENVONLY, flags, flagsArray, &isCopy, "H5Pget_filter2: flags array not pinned"); PIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, &isCopy, "H5Pget_filter2: nelmts array not pinned"); - PIN_INT_ARRAY(ENVONLY, filter_config, filter_configArray, &isCopy, "H5Pget_filter2: filter_config array not pinned"); + PIN_INT_ARRAY(ENVONLY, filter_config, filter_configArray, &isCopy, + "H5Pget_filter2: filter_config array not pinned"); if (NULL == cd_values && *cd_nelmtsArray == 0) { /* direct cast (size_t *)variable fails on 32-bit environment */ long long cd_nelmts_temp = 0; - size_t cd_nelmts_t = (size_t) cd_nelmts_temp; + size_t cd_nelmts_t = (size_t)cd_nelmts_temp; - if ((status = H5Pget_filter2((hid_t)plist, (unsigned)filter_number, - (unsigned int *)flagsArray, &cd_nelmts_t, NULL, - (size_t)namelen, filter, (unsigned int *)filter_configArray)) < 0) + if ((status = H5Pget_filter2((hid_t)plist, (unsigned)filter_number, (unsigned int *)flagsArray, + &cd_nelmts_t, NULL, (size_t)namelen, filter, + (unsigned int *)filter_configArray)) < 0) H5_LIBRARY_ERROR(ENVONLY); filter[namelen - 1] = '\0'; @@ -700,11 +683,11 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter2 { /* direct cast (size_t *)variable fails on 32-bit environment */ long long cd_nelmts_temp = *cd_nelmtsArray; - size_t cd_nelmts_t = (size_t) cd_nelmts_temp; + size_t cd_nelmts_t = (size_t)cd_nelmts_temp; - if ((status = H5Pget_filter2((hid_t)plist, (unsigned)filter_number, - (unsigned int *)flagsArray, &cd_nelmts_t, (unsigned int *)cd_valuesArray, - (size_t)namelen, filter, (unsigned int *)filter_configArray)) < 0) + if ((status = H5Pget_filter2((hid_t)plist, (unsigned)filter_number, (unsigned int *)flagsArray, + &cd_nelmts_t, (unsigned int *)cd_valuesArray, (size_t)namelen, + filter, (unsigned int *)filter_configArray)) < 0) H5_LIBRARY_ERROR(ENVONLY); filter[namelen - 1] = '\0'; @@ -715,7 +698,8 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter2 if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, filter))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_filter2: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, "H5Pget_filter2: out of memory - unable to construct string from UTF characters"); } ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, (jobject)str); @@ -742,19 +726,19 @@ done: * Signature: (JI[I[J[IJ[Ljava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id - (JNIEnv *env, jclass clss, jlong plist, jint filter, - jintArray flags, jlongArray cd_nelmts, jintArray cd_values, jlong namelen, jobjectArray name) +Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id(JNIEnv *env, jclass clss, jlong plist, jint filter, + jintArray flags, jlongArray cd_nelmts, jintArray cd_values, + jlong namelen, jobjectArray name) { - jboolean isCopy; - jstring str; - jlong *cd_nelmtsArray = NULL; - jint *cd_valuesArray = NULL; - jint *flagsArray = NULL; - char *aName = NULL; - long bs; - int rank; - herr_t status = FAIL; + jboolean isCopy; + jstring str; + jlong * cd_nelmtsArray = NULL; + jint * cd_valuesArray = NULL; + jint * flagsArray = NULL; + char * aName = NULL; + long bs; + int rank; + herr_t status = FAIL; UNUSED(clss); @@ -771,12 +755,13 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id if (NULL == name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id: name is NULL"); - if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)bs))) + if (NULL == (aName = (char *)HDmalloc(sizeof(char) * (size_t)bs))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_filter_by_id: memory allocation failed"); PIN_INT_ARRAY(ENVONLY, flags, flagsArray, &isCopy, "H5Pget_filter_by_id: flags not pinned"); PIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, &isCopy, "H5Pget_filter_by_id: cd_nelms not pinned"); - PIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesArray, &isCopy, "H5Pget_filter_by_id: cd_values array not pinned"); + PIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesArray, &isCopy, + "H5Pget_filter_by_id: cd_values array not pinned"); if ((rank = ENVPTR->GetArrayLength(ENVONLY, cd_values)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); @@ -787,11 +772,11 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id /* direct cast (size_t *)variable fails on 32-bit environment */ unsigned int filter_config; long long cd_nelmts_temp = *cd_nelmtsArray; - size_t cd_nelmts_t = (size_t) cd_nelmts_temp; + size_t cd_nelmts_t = (size_t)cd_nelmts_temp; - if ((status = H5Pget_filter_by_id2((hid_t)plist, (H5Z_filter_t)filter, - (unsigned int *)flagsArray, &cd_nelmts_t, (unsigned int *)cd_valuesArray, - (size_t)namelen, (char *)aName, &filter_config)) < 0) + if ((status = H5Pget_filter_by_id2((hid_t)plist, (H5Z_filter_t)filter, (unsigned int *)flagsArray, + &cd_nelmts_t, (unsigned int *)cd_valuesArray, (size_t)namelen, + (char *)aName, &filter_config)) < 0) H5_LIBRARY_ERROR(ENVONLY); aName[bs - 1] = '\0'; @@ -801,7 +786,8 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, aName))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_filter_by_id: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, "H5Pget_filter_by_id: out of memory - unable to construct string from UTF characters"); } ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, (jobject)str); @@ -826,19 +812,19 @@ done: * Signature: (JI[I[J[IJ[Ljava/lang/String;[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2 - (JNIEnv *env, jclass clss, jlong plist, jint filter, - jintArray flags, jlongArray cd_nelmts, jintArray cd_values, jlong namelen, jobjectArray name, jintArray filter_config) +Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2(JNIEnv *env, jclass clss, jlong plist, jint filter, + jintArray flags, jlongArray cd_nelmts, jintArray cd_values, + jlong namelen, jobjectArray name, jintArray filter_config) { - jboolean isCopy; - jstring str; - jlong *cd_nelmtsArray = NULL; - jint *cd_valuesArray = NULL; - jint *flagsArray = NULL; - jint *filter_configArray = NULL; - long bs; - char *aName = NULL; - herr_t status = FAIL; + jboolean isCopy; + jstring str; + jlong * cd_nelmtsArray = NULL; + jint * cd_valuesArray = NULL; + jint * flagsArray = NULL; + jint * filter_configArray = NULL; + long bs; + char * aName = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -857,22 +843,24 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2 if (NULL == filter_config) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id2: filter_config is NULL"); - if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)bs))) + if (NULL == (aName = (char *)HDmalloc(sizeof(char) * (size_t)bs))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_filter_by_id2: memory allocation failed"); PIN_INT_ARRAY(ENVONLY, flags, flagsArray, &isCopy, "H5Pget_filter_by_id2: flags not pinned"); PIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, &isCopy, "H5Pget_filter_by_id2: cd_nelms not pinned"); - PIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesArray, &isCopy, "H5Pget_filter_by_id2: cd_values array not pinned"); - PIN_INT_ARRAY(ENVONLY, filter_config, filter_configArray, &isCopy, "H5Pget_filter_by_id2: filter_config not pinned"); + PIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesArray, &isCopy, + "H5Pget_filter_by_id2: cd_values array not pinned"); + PIN_INT_ARRAY(ENVONLY, filter_config, filter_configArray, &isCopy, + "H5Pget_filter_by_id2: filter_config not pinned"); { /* direct cast (size_t *)variable fails on 32-bit environment */ long long cd_nelmts_temp = *cd_nelmtsArray; - size_t cd_nelmts_t = (size_t) cd_nelmts_temp; + size_t cd_nelmts_t = (size_t)cd_nelmts_temp; - if ((status = H5Pget_filter_by_id2((hid_t)plist, (H5Z_filter_t)filter, - (unsigned int *)flagsArray, &cd_nelmts_t, (unsigned int *)cd_valuesArray, - (size_t)namelen, (char *)aName, (unsigned int *)filter_configArray)) < 0) + if ((status = H5Pget_filter_by_id2((hid_t)plist, (H5Z_filter_t)filter, (unsigned int *)flagsArray, + &cd_nelmts_t, (unsigned int *)cd_valuesArray, (size_t)namelen, + (char *)aName, (unsigned int *)filter_configArray)) < 0) H5_LIBRARY_ERROR(ENVONLY); aName[bs - 1] = '\0'; @@ -882,7 +870,8 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2 if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, aName))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_filter_by_id2: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, "H5Pget_filter_by_id2: out of memory - unable to construct string from UTF characters"); } ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, (jobject)str); @@ -909,13 +898,12 @@ done: * Signature: (JIIJ[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pmodify_1filter - (JNIEnv *env, jclass clss, jlong plist, jint filter, - jint flags, jlong cd_nelmts, jintArray cd_values) +Java_hdf_hdf5lib_H5_H5Pmodify_1filter(JNIEnv *env, jclass clss, jlong plist, jint filter, jint flags, + jlong cd_nelmts, jintArray cd_values) { - jboolean isCopy; - jint *cd_valuesP = NULL; - herr_t status = FAIL; + jboolean isCopy; + jint * cd_valuesP = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -925,7 +913,7 @@ Java_hdf_hdf5lib_H5_H5Pmodify_1filter PIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesP, &isCopy, "H5Pmodify_filter: cd_values not pinned"); if ((status = H5Pmodify_filter((hid_t)plist, (H5Z_filter_t)filter, (const unsigned int)flags, - (size_t)cd_nelmts, (unsigned int *)cd_valuesP)) < 0) + (size_t)cd_nelmts, (unsigned int *)cd_valuesP)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -941,8 +929,7 @@ done: * Signature: (JI)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5P1remove_1filter - (JNIEnv *env, jclass clss, jlong obj_id, jint filter) +Java_hdf_hdf5lib_H5_H5P1remove_1filter(JNIEnv *env, jclass clss, jlong obj_id, jint filter) { herr_t status = FAIL; @@ -961,8 +948,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fletcher32 - (JNIEnv *env, jclass clss, jlong plist) +Java_hdf_hdf5lib_H5_H5Pset_1fletcher32(JNIEnv *env, jclass clss, jlong plist) { herr_t retVal = FAIL; @@ -981,8 +967,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1nbit - (JNIEnv *env, jclass clss, jlong plist_id) +Java_hdf_hdf5lib_H5_H5Pset_1nbit(JNIEnv *env, jclass clss, jlong plist_id) { herr_t retVal = FAIL; @@ -1001,8 +986,8 @@ done: * Signature: (JII)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1scaleoffset - (JNIEnv *env, jclass clss, jlong plist_id, jint scale_type, jint scale_factor) +Java_hdf_hdf5lib_H5_H5Pset_1scaleoffset(JNIEnv *env, jclass clss, jlong plist_id, jint scale_type, + jint scale_factor) { herr_t retVal = FAIL; @@ -1026,8 +1011,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1shuffle - (JNIEnv *env, jclass clss, jlong plist) +Java_hdf_hdf5lib_H5_H5Pset_1shuffle(JNIEnv *env, jclass clss, jlong plist) { herr_t retVal = FAIL; @@ -1046,8 +1030,8 @@ done: * Signature: (JII)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1szip - (JNIEnv *env, jclass clss, jlong plist, jint options_mask, jint pixels_per_block) +Java_hdf_hdf5lib_H5_H5Pset_1szip(JNIEnv *env, jclass clss, jlong plist, jint options_mask, + jint pixels_per_block) { herr_t retVal = FAIL; @@ -1066,11 +1050,11 @@ done: * Signature: (JLjava/lang/String;JJ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1external - (JNIEnv *env, jclass clss, jlong plist, jstring name, jlong offset, jlong size) +Java_hdf_hdf5lib_H5_H5Pset_1external(JNIEnv *env, jclass clss, jlong plist, jstring name, jlong offset, + jlong size) { const char *fileName = NULL; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -1095,18 +1079,17 @@ done: * Signature: (JIJ[Ljava/lang/String;[J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1external - (JNIEnv *env, jclass clss, jlong plist, jint idx, jlong name_size, - jobjectArray name, jlongArray size) +Java_hdf_hdf5lib_H5_H5Pget_1external(JNIEnv *env, jclass clss, jlong plist, jint idx, jlong name_size, + jobjectArray name, jlongArray size) { - jboolean isCopy; - jstring str; - hsize_t s; - off_t o; - jsize arrLen; - jlong *theArray = NULL; - char *file = NULL; - herr_t status = FAIL; + jboolean isCopy; + jstring str; + hsize_t s; + off_t o; + jsize arrLen; + jlong * theArray = NULL; + char * file = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -1121,11 +1104,11 @@ Java_hdf_hdf5lib_H5_H5Pget_1external H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_external: size input array < 2"); if (name_size > 0) - if (NULL == (file = (char *) HDmalloc(sizeof(char) * (size_t)name_size))) + if (NULL == (file = (char *)HDmalloc(sizeof(char) * (size_t)name_size))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_external: memory allocation failed"); - if ((status = H5Pget_external((hid_t) plist, (unsigned)idx, (size_t)name_size, - file, (off_t *)&o, (hsize_t *)&s)) < 0) + if ((status = H5Pget_external((hid_t)plist, (unsigned)idx, (size_t)name_size, file, (off_t *)&o, + (hsize_t *)&s)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (NULL != size) { @@ -1140,7 +1123,8 @@ Java_hdf_hdf5lib_H5_H5Pget_1external if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, file))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_external: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, "H5Pget_external: out of memory - unable to construct string from UTF characters"); } ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, (jobject)str); @@ -1162,8 +1146,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1external_1count - (JNIEnv *env, jclass clss, jlong plist) +Java_hdf_hdf5lib_H5_H5Pget_1external_1count(JNIEnv *env, jclass clss, jlong plist) { int retVal = -1; @@ -1182,12 +1165,11 @@ done: * Signature: (JJLjava/lang/String;Ljava/lang/String;J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1virtual - (JNIEnv *env, jclass clss, jlong dcpl_id, jlong vspace_id, - jstring src_file_name, jstring src_dset_name, jlong src_space_id) +Java_hdf_hdf5lib_H5_H5Pset_1virtual(JNIEnv *env, jclass clss, jlong dcpl_id, jlong vspace_id, + jstring src_file_name, jstring src_dset_name, jlong src_space_id) { - const char *fstr = NULL; - const char *dstr = NULL; + const char *fstr = NULL; + const char *dstr = NULL; herr_t retVal = FAIL; UNUSED(clss); @@ -1216,8 +1198,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1virtual_1count - (JNIEnv *env, jclass clss, jlong dcpl_id) +Java_hdf_hdf5lib_H5_H5Pget_1virtual_1count(JNIEnv *env, jclass clss, jlong dcpl_id) { size_t s = 0; @@ -1236,29 +1217,30 @@ done: * Signature: (JJ)Ljava/lang/String; */ JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1virtual_1dsetname - (JNIEnv *env, jclass clss, jlong dcpl_id, jlong idx) +Java_hdf_hdf5lib_H5_H5Pget_1virtual_1dsetname(JNIEnv *env, jclass clss, jlong dcpl_id, jlong idx) { - ssize_t buf_size; - char *dname = NULL; - jstring str = NULL; + ssize_t buf_size; + char * dname = NULL; + jstring str = NULL; UNUSED(clss); /* get the length of the filename */ - if ((buf_size = H5Pget_virtual_dsetname((hid_t)dcpl_id, (size_t) idx, NULL, 0)) < 0) + if ((buf_size = H5Pget_virtual_dsetname((hid_t)dcpl_id, (size_t)idx, NULL, 0)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (NULL == (dname = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) + if (NULL == (dname = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_virtual_dsetname: memory allocation failed"); - if (H5Pget_virtual_dsetname((hid_t)dcpl_id, (size_t) idx, dname, (size_t)buf_size + 1) < 0) + if (H5Pget_virtual_dsetname((hid_t)dcpl_id, (size_t)idx, dname, (size_t)buf_size + 1) < 0) H5_LIBRARY_ERROR(ENVONLY); dname[buf_size] = '\0'; if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, dname))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_virtual_dsetname: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, + "H5Pget_virtual_dsetname: out of memory - unable to construct string from UTF characters"); } done: @@ -1274,29 +1256,30 @@ done: * Signature: (JJ)Ljava/lang/String; */ JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1virtual_1filename - (JNIEnv *env, jclass clss, jlong dcpl_id, jlong idx) +Java_hdf_hdf5lib_H5_H5Pget_1virtual_1filename(JNIEnv *env, jclass clss, jlong dcpl_id, jlong idx) { - ssize_t buf_size; - char *fname = NULL; - jstring str = NULL; + ssize_t buf_size; + char * fname = NULL; + jstring str = NULL; UNUSED(clss); /* get the length of the filename */ - if ((buf_size = H5Pget_virtual_filename((hid_t)dcpl_id, (size_t) idx, NULL, 0)) < 0) + if ((buf_size = H5Pget_virtual_filename((hid_t)dcpl_id, (size_t)idx, NULL, 0)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (NULL == (fname = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) + if (NULL == (fname = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_virtual_filename: memory allocation failed"); - if (H5Pget_virtual_filename((hid_t)dcpl_id, (size_t) idx, fname, (size_t)buf_size + 1) < 0) + if (H5Pget_virtual_filename((hid_t)dcpl_id, (size_t)idx, fname, (size_t)buf_size + 1) < 0) H5_LIBRARY_ERROR(ENVONLY); fname[buf_size] = '\0'; if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, fname))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_virtual_filename: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, + "H5Pget_virtual_filename: out of memory - unable to construct string from UTF characters"); } done: @@ -1312,14 +1295,13 @@ done: * Signature: (JJ)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1virtual_1srcspace - (JNIEnv *env, jclass clss, jlong dcpl_id, jlong idx) +Java_hdf_hdf5lib_H5_H5Pget_1virtual_1srcspace(JNIEnv *env, jclass clss, jlong dcpl_id, jlong idx) { hid_t space_id = H5I_INVALID_HID; UNUSED(clss); - if ((space_id = H5Pget_virtual_srcspace((hid_t)dcpl_id, (size_t) idx)) < 0) + if ((space_id = H5Pget_virtual_srcspace((hid_t)dcpl_id, (size_t)idx)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -1332,14 +1314,13 @@ done: * Signature: (JJ)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1virtual_1vspace - (JNIEnv *env, jclass clss, jlong dcpl_id, jlong idx) +Java_hdf_hdf5lib_H5_H5Pget_1virtual_1vspace(JNIEnv *env, jclass clss, jlong dcpl_id, jlong idx) { hid_t space_id = H5I_INVALID_HID; UNUSED(clss); - if ((space_id = H5Pget_virtual_vspace((hid_t)dcpl_id, (size_t) idx)) < 0) + if ((space_id = H5Pget_virtual_vspace((hid_t)dcpl_id, (size_t)idx)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -1352,11 +1333,10 @@ done: * Signature: (JLjava/lang/String;)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1virtual_1prefix - (JNIEnv *env, jclass clss, jlong dapl_id, jstring prefix) +Java_hdf_hdf5lib_H5_H5Pset_1virtual_1prefix(JNIEnv *env, jclass clss, jlong dapl_id, jstring prefix) { const char *virtPrefix = NULL; - herr_t retVal = FAIL; + herr_t retVal = FAIL; UNUSED(clss); @@ -1379,28 +1359,28 @@ done: * Signature: (J)Ljava/lang/String; */ JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1virtual_1prefix - (JNIEnv *env, jclass clss, jlong dapl_id) +Java_hdf_hdf5lib_H5_H5Pget_1virtual_1prefix(JNIEnv *env, jclass clss, jlong dapl_id) { - ssize_t prefix_size = -1; - char *pre = NULL; - jstring str = NULL; + ssize_t prefix_size = -1; + char * pre = NULL; + jstring str = NULL; UNUSED(clss); if ((prefix_size = H5Pget_virtual_prefix((hid_t)dapl_id, (char *)NULL, 0)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (NULL == (pre = (char *) HDmalloc(sizeof(char) * (size_t) prefix_size + 1))) + if (NULL == (pre = (char *)HDmalloc(sizeof(char) * (size_t)prefix_size + 1))) H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_virtual_prefix: memory allocation failed"); - if (H5Pget_virtual_prefix((hid_t)dapl_id, (char *)pre, (size_t) prefix_size + 1) < 0) + if (H5Pget_virtual_prefix((hid_t)dapl_id, (char *)pre, (size_t)prefix_size + 1) < 0) H5_LIBRARY_ERROR(ENVONLY); pre[prefix_size] = '\0'; if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, pre))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_virtual_prefix: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, "H5Pget_virtual_prefix: out of memory - unable to construct string from UTF characters"); } done: |