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Diffstat (limited to 'java/src/jni/h5pImp.c')
| -rw-r--r-- | java/src/jni/h5pImp.c | 5344 |
1 files changed, 5344 insertions, 0 deletions
diff --git a/java/src/jni/h5pImp.c b/java/src/jni/h5pImp.c new file mode 100644 index 0000000..f4fee74 --- /dev/null +++ b/java/src/jni/h5pImp.c @@ -0,0 +1,5344 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the files COPYING and Copyright.html. COPYING can be found at the root * + * of the source code distribution tree; Copyright.html can be found at the * + * root level of an installed copy of the electronic HDF5 document set and * + * is linked from the top-level documents page. It can also be found at * + * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * + * access to either file, you may request a copy from help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +/* + * For details of the HDF libraries, see the HDF Documentation at: + * http://hdfdfgroup.org/HDF5/doc/ + * + */ + +#ifdef __cplusplus +extern "C" { +#endif /* __cplusplus */ + +#include <stdlib.h> +#include "hdf5.h" +#include "h5util.h" +#include "h5pImp.h" + +extern JavaVM *jvm; +extern jobject visit_callback; +extern jobject copy_callback; +extern jobject close_callback; +extern jobject create_callback; +extern jobject compare_callback; +extern jobject get_callback; +extern jobject set_callback; +extern jobject delete_callback; + +/********************/ +/* Local Prototypes */ +/********************/ + +static herr_t H5P_cls_create_func_cb(hid_t prop_id, void *create_data); +static herr_t H5P_cls_copy_func_cb(hid_t new_prop_id, hid_t old_prop_id, void *copy_data); +static herr_t H5P_cls_close_func_cb(hid_t prop_id, void *close_data); + +static herr_t H5P_prp_create_func_cb(const char *name, size_t size, void *value); +static herr_t H5P_prp_copy_func_cb(const char *name, size_t size, void *value); +static herr_t H5P_prp_close_func_cb(const char *name, size_t size, void *value); +static int H5P_prp_compare_func_cb(void *value1, void *value2, size_t size); +static herr_t H5P_prp_get_func_cb(hid_t prop_id, const char *name, size_t size, void *value); +static herr_t H5P_prp_set_func_cb(hid_t prop_id, const char *name, size_t size, void *value); +static herr_t H5P_prp_delete_func_cb(hid_t prop_id, const char *name, size_t size, void *value); + +static herr_t H5P_iterate_cb(hid_t prop_id, const char *name, void *op_data); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pcreate + * Signature: (J)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5__1H5Pcreate(JNIEnv *env, jclass clss, jlong type) +{ + hid_t retVal = -1; + + retVal = H5Pcreate((hid_t)type); + if (retVal < 0) + h5libraryError(env); + + return (jlong)retVal; +} /* end Java_hdf_hdf5lib_H5__1H5Pcreate */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pclose + * Signature: (J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5__1H5Pclose(JNIEnv *env, jclass clss, jlong plist) +{ + herr_t retVal = 0; + + if (plist > 0) + retVal = H5Pclose((hid_t)plist); + + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5__1H5Pclose */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_class + * Signature: (J)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1class(JNIEnv *env, jclass clss, jlong plist) +{ + hid_t retVal = -1; + + retVal = retVal = H5Pget_class((hid_t) plist); + if (retVal == H5P_ROOT) + h5libraryError(env); + + return (jlong)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1class */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pcopy + * Signature: (J)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5__1H5Pcopy(JNIEnv *env, jclass clss, jlong plist) +{ + hid_t retVal = -1; + + retVal = H5Pcopy((hid_t)plist); + if (retVal < 0) + h5libraryError(env); + + return (jlong)retVal; +} /* end Java_hdf_hdf5lib_H5__1H5Pcopy */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_version + * Signature: (J[I)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1version(JNIEnv *env, jclass clss, jlong plist, jintArray version_info) +{ + herr_t status = -1; + jint *theArray; + jboolean isCopy; + + if (version_info == NULL) { + h5nullArgument(env, "H5Pget_version: version_info input array is NULL"); + } /* end if */ + else if (ENVPTR->GetArrayLength(ENVPAR version_info) < 4) { + h5badArgument(env, "H5Pget_version: version_info input array < 4"); + } /* end else if */ + else { + theArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR version_info, &isCopy); + if (theArray == NULL) { + h5JNIFatalError(env, "H5Pget_version: version_info not pinned"); + } /* end if */ + else { + status = H5Pget_version((hid_t)plist, (unsigned *)&(theArray[0]), + (unsigned *)&(theArray[1]), (unsigned *)&(theArray[2]), (unsigned *)&(theArray[3])); + if (status < 0) { + ENVPTR->ReleaseIntArrayElements(ENVPAR version_info, theArray, JNI_ABORT); + h5libraryError(env); + } /* end if */ + else + ENVPTR->ReleaseIntArrayElements(ENVPAR version_info, theArray, 0); + } /* end else */ + } /* end else */ + + return (jint)status; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1version */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_userblock + * Signature: (JJ)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1userblock(JNIEnv *env, jclass clss, jlong plist, jlong size) +{ + herr_t retVal = -1; + long sz = (long)size; + + retVal = H5Pset_userblock((hid_t)plist, (hsize_t)sz); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1userblock */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_userblock + * Signature: (J[J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1userblock(JNIEnv *env, jclass clss, jlong plist, jlongArray size) +{ + herr_t status = -1; + jlong *theArray; + jboolean isCopy; + hsize_t s; + + if (size == NULL) { + h5nullArgument(env, "H5Pget_userblock: size is NULL"); + } /* end if */ + else { + theArray = (jlong*)ENVPTR->GetLongArrayElements(ENVPAR size, &isCopy); + if (theArray == NULL) { + h5JNIFatalError(env, "H5Pget_userblock: size not pinned"); + } /* end if */ + else { + status = H5Pget_userblock((hid_t)plist, &s); + + if (status < 0) { + ENVPTR->ReleaseLongArrayElements(ENVPAR size, theArray, JNI_ABORT); + h5libraryError(env); + } /* end if */ + else { + theArray[0] = (jlong)s; + ENVPTR->ReleaseLongArrayElements(ENVPAR size, theArray, 0); + } /* end else */ + } /* end else */ + } /* end else */ + + return (jint)status; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1userblock */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_sizes + * Signature: (JII)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1sizes(JNIEnv *env, jclass clss, jlong plist, jint sizeof_addr, jint sizeof_size) +{ + herr_t retVal = -1; + + retVal = H5Pset_sizes((hid_t)plist, (size_t)sizeof_addr, (size_t)sizeof_size); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1sizes */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_sizes + * Signature: (J[J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1sizes(JNIEnv *env, jclass clss, jlong plist, jlongArray size) +{ + herr_t status = -1; + jlong *theArray; + jboolean isCopy; + size_t ss; + size_t sa; + + if (size == NULL) { + h5nullArgument(env, "H5Pget_sizes: size is NULL"); + } /* end if */ + else if (ENVPTR->GetArrayLength(ENVPAR size) < 2) { + h5badArgument(env, "H5Pget_sizes: size input array < 2 elements"); + } + else { + theArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR size, &isCopy); + if (theArray == NULL) { + h5JNIFatalError(env, "H5Pget_sizes: size not pinned"); + } /* end if */ + else { + status = H5Pget_sizes((hid_t)plist, &sa, &ss); + if (status < 0) { + ENVPTR->ReleaseLongArrayElements(ENVPAR size, theArray, JNI_ABORT); + h5libraryError(env); + } /* end if */ + else { + theArray[0] = (jlong)sa; + theArray[1] = (jlong)ss; + ENVPTR->ReleaseLongArrayElements(ENVPAR size, theArray, 0); + } /* end else */ + } /* end else */ + } /* end else */ + + return (jint)status; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1sizes */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_sym_k + * Signature: (JII)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1sym_1k(JNIEnv *env, jclass clss, jlong plist, jint ik, jint lk) +{ + herr_t retVal = -1; + + retVal = H5Pset_sym_k((hid_t)plist, (unsigned)ik, (unsigned)lk); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1sym_1k */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_sym_k + * Signature: (J[I)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1sym_1k(JNIEnv *env, jclass clss, jlong plist, jintArray size) +{ + herr_t status = -1; + jint *theArray; + jboolean isCopy; + + if (size == NULL) { + h5nullArgument(env, "H5Pget_sym_k: size is NULL"); + } /* end if */ + else if (ENVPTR->GetArrayLength(ENVPAR size) < 2) { + h5badArgument(env, "H5Pget_sym_k: size < 2 elements"); + } /* end else if */ + else { + theArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR size, &isCopy); + if (theArray == NULL) { + h5JNIFatalError(env, "H5Pget_sym_k: size not pinned"); + } /* end if */ + else { + status = H5Pget_sym_k((hid_t)plist, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1])); + if (status < 0) { + ENVPTR->ReleaseIntArrayElements(ENVPAR size, theArray, JNI_ABORT); + h5libraryError(env); + } /* end if */ + else + ENVPTR->ReleaseIntArrayElements(ENVPAR size, theArray, 0); + } /* end else */ + } /* end else */ + + return (jint)status; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1sym_1k */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_istore_k + * Signature: (JI)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1istore_1k(JNIEnv *env, jclass clss, jlong plist, jint ik) +{ + herr_t retVal = -1; + + retVal = H5Pset_istore_k((hid_t)plist, (unsigned)ik); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1istore_1k */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_istore_k + * Signature: (J[I)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1istore_1k(JNIEnv *env, jclass clss, jlong plist, jintArray ik) +{ + herr_t status = -1; + jint *theArray; + jboolean isCopy; + + if (ik == NULL) { + h5nullArgument(env, "H5Pget_store_k: ik is NULL"); + } /* end if */ + else { + theArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR ik, &isCopy); + if (theArray == NULL) { + h5JNIFatalError(env, "H5Pget_store_k: size not pinned"); + } /* end if */ + else { + status = H5Pget_istore_k((hid_t)plist, (unsigned *)&(theArray[0])); + if (status < 0) { + ENVPTR->ReleaseIntArrayElements(ENVPAR ik, theArray, JNI_ABORT); + h5libraryError(env); + } /* end if */ + else + ENVPTR->ReleaseIntArrayElements(ENVPAR ik, theArray, 0); + } /* end else */ + } /* end else */ + + return (jint)status; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1istore_1k */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_layout + * Signature: (JI)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1layout(JNIEnv *env, jclass clss, jlong plist, jint layout) +{ + herr_t retVal = -1; + + retVal = H5Pset_layout((hid_t)plist, (H5D_layout_t)layout); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1layout */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_layout + * Signature: (J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1layout(JNIEnv *env, jclass clss, jlong plist) +{ + H5D_layout_t retVal = H5D_LAYOUT_ERROR; + + retVal = H5Pget_layout((hid_t)plist); + if (retVal == H5D_LAYOUT_ERROR) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1layout */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_chunk + * Signature: (JI[B)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1chunk(JNIEnv *env, jclass clss, jlong plist, jint ndims, jbyteArray dim) +{ + herr_t status = -1; + jbyte *theArray; + jboolean isCopy; + hsize_t *da; + hsize_t *lp; + jlong *jlp; + size_t i; + size_t rank; + + if (dim == NULL) { + h5nullArgument(env, "H5Pset_chunk: dim array is NULL"); + } /* end if */ + else { + i = (size_t)ENVPTR->GetArrayLength(ENVPAR dim); + rank = i / sizeof(jlong); + if (rank < ndims) { + h5badArgument(env, "H5Pset_chunk: dims array < ndims"); + } /* end if */ + else { + theArray = (jbyte *)ENVPTR->GetByteArrayElements(ENVPAR dim, &isCopy); + if (theArray == NULL) { + h5JNIFatalError(env, "H5Pset_chunk: dim array not pinned"); + } /* end if */ + else { + da = lp = (hsize_t *)HDmalloc(rank * sizeof(hsize_t)); + if (da == NULL) { + ENVPTR->ReleaseByteArrayElements(ENVPAR dim, theArray, JNI_ABORT); + h5JNIFatalError(env, "H5Pset_chunk: dims not converted to hsize_t"); + } /* end if */ + else { + jlp = (jlong *)theArray; + for (i = 0; i < rank; i++) { + *lp = (hsize_t)*jlp; + lp++; + jlp++; + } /* end if */ + + status = H5Pset_chunk((hid_t)plist, (int)ndims, da); + + ENVPTR->ReleaseByteArrayElements(ENVPAR dim, theArray, JNI_ABORT); + HDfree(da); + + if (status < 0) + h5libraryError(env); + } /* end else */ + } /* end else */ + } /* end else */ + } /* end else */ + + return (jint)status; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1chunk */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_chunk + * Signature: (JI[J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1chunk(JNIEnv *env, jclass clss, jlong plist, jint max_ndims, jlongArray dims) +{ + herr_t status = -1; + jlong *theArray; + jboolean isCopy; + hsize_t *da; + int i; + + if (dims == NULL) { + h5nullArgument(env, "H5Pget_chunk: dims is NULL"); + } /* end if */ + else if (ENVPTR->GetArrayLength(ENVPAR dims) < max_ndims) { + h5badArgument(env, "H5Pget_chunk: dims array < max_ndims"); + } /* end else if */ + else { + theArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR dims, &isCopy); + if (theArray == NULL) { + h5JNIFatalError(env, "H5Pget_chunk: input dims not pinned"); + } /* end if */ + else { + da = (hsize_t *)HDmalloc((size_t)max_ndims * sizeof(hsize_t)); + if (da == NULL) { + ENVPTR->ReleaseLongArrayElements(ENVPAR dims, theArray, JNI_ABORT); + h5JNIFatalError(env, "H5Pget_chunk: dims not converted to hsize_t"); + } /* end if */ + else { + status = H5Pget_chunk((hid_t)plist, (int)max_ndims, da); + + if (status < 0) { + ENVPTR->ReleaseLongArrayElements(ENVPAR dims, theArray, JNI_ABORT); + HDfree (da); + h5libraryError(env); + } /* end if */ + else { + for (i = 0; i < max_ndims; i++) { + theArray[i] = (jlong)da[i]; + } + HDfree (da); + ENVPTR->ReleaseLongArrayElements(ENVPAR dims, theArray, 0); + } /* end else */ + } /* end else */ + } /* end else */ + } /* end else */ + + return (jint)status; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1chunk */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_alignment + * Signature: (JJJ)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1alignment(JNIEnv *env, jclass clss, jlong plist, jlong threshold, jlong alignment) +{ + herr_t retVal = -1; + long thr = (long)threshold; + long align = (long)alignment; + + retVal = H5Pset_alignment((hid_t)plist, (hsize_t)thr, (hsize_t)align); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1alignment */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_alignment + * Signature: (J[J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1alignment(JNIEnv *env, jclass clss, jlong plist, jlongArray alignment) +{ + herr_t status = -1; + jlong *theArray; + jboolean isCopy; + hsize_t t; + hsize_t a; + + if (alignment == NULL) { + h5nullArgument(env, "H5Pget_alignment: input alignment is NULL"); + } /* end if */ + else { + if (ENVPTR->GetArrayLength(ENVPAR alignment) < 2) { + h5badArgument(env, "H5Pget_alignment: alignment input array < 2"); + } /* end if */ + else { + theArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR alignment, &isCopy); + if (theArray == NULL) { + h5JNIFatalError(env, "H5Pget_alignment: input array not pinned"); + } /* end if */ + else { + status = H5Pget_alignment((hid_t)plist, &t, &a); + if (status < 0) { + ENVPTR->ReleaseLongArrayElements(ENVPAR alignment, theArray, JNI_ABORT); + h5libraryError(env); + } /* end if */ + else { + theArray[0] = (jlong)t; + theArray[1] = (jlong)a; + ENVPTR->ReleaseLongArrayElements(ENVPAR alignment, theArray, 0); + } /* end else */ + } /* end else */ + } /* end else */ + } /* end else */ + + return (jint)status; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1alignment */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_external + * Signature: (JLjava/lang/String;JJ)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1external(JNIEnv *env, jclass clss, jlong plist, jstring name, jlong offset, jlong size) +{ + herr_t status = -1; + const char *fileName; + off_t off; + hsize_t sz; + hid_t plid; + + plid = (hid_t)plist; + off = (off_t)offset; + sz = (hsize_t)size; + + PIN_JAVA_STRING(name, fileName, -1); + + status = H5Pset_external(plid, fileName, off, sz); + + UNPIN_JAVA_STRING(name, fileName); + + if (status < 0) + h5libraryError(env); + + return (jint)status; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1external */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_external_count + * Signature: (J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1external_1count(JNIEnv *env, jclass clss, jlong plist) +{ + int retVal = -1; + + retVal = H5Pget_external_count((hid_t)plist); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1external_1count */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_external + * Signature: (JIJ[Ljava/lang/String;[J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1external(JNIEnv *env, jclass clss, jlong plist, jint idx, jlong name_size, + jobjectArray name, jlongArray size) +{ + herr_t status = -1; + jlong *theArray; + jboolean isCopy; + char *file; + jstring str; + off_t o; + hsize_t s; + + if (name_size < 0) { + h5badArgument(env, "H5Pget_external: name_size < 0"); + return -1; + } /* end if */ + else if (name_size == 0) { + file = NULL; + } /* end else if */ + else { + file = (char *)HDmalloc(sizeof(char)*(size_t)name_size); + } /* end else */ + + if (size != NULL) { + if (ENVPTR->GetArrayLength(ENVPAR size) < 2) { + HDfree(file); + h5badArgument(env, "H5Pget_external: size input array < 2"); + return -1; + } /* end if */ + theArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR size, &isCopy); + if (theArray == NULL) { + HDfree(file); + h5JNIFatalError( env, "H5Pget_external: size array not pinned"); + return -1; + } /* end if */ + } /* end if */ + + status = H5Pget_external((hid_t) plist, (unsigned)idx, (size_t)name_size, + file, (off_t *)&o, (hsize_t *)&s); + if (status < 0) { + if (size != NULL) { + ENVPTR->ReleaseLongArrayElements(ENVPAR size, theArray, JNI_ABORT); + } /* end if */ + HDfree(file); + h5libraryError(env); + } /* end if */ + else { + if (size != NULL) { + theArray[0] = o; + theArray[1] = (jlong)s; + ENVPTR->ReleaseLongArrayElements(ENVPAR size, theArray, 0); + } /* end if */ + + if (file != NULL) { + /* NewStringUTF may throw OutOfMemoryError */ + str = ENVPTR->NewStringUTF(ENVPAR file); + if (str == NULL) { + HDfree(file); + h5JNIFatalError(env, "H5Pget_external: return array not created"); + } /* end if */ + else { + /* SetObjectArrayElement may raise exceptions */ + ENVPTR->SetObjectArrayElement(ENVPAR name, 0, (jobject)str); + HDfree(file); + } /* end else */ + } /* end if */ + } /* end else */ + return (jint)status; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1external */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_fill_value + * Signature: (JJ[B)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1fill_1value(JNIEnv *env, jclass clss, jlong plist_id, jlong type_id, jbyteArray value) +{ + jint status = -1; + jbyte *byteP; + jboolean isCopy; + + if (value != NULL) { + byteP = ENVPTR->GetByteArrayElements(ENVPAR value, &isCopy); + if (byteP == NULL) { + h5JNIFatalError(env, "H5Pget_fill_value: value array not pinned"); + return -1; + } /* end if */ + } /* end if */ + + status = H5Pset_fill_value((hid_t)plist_id, (hid_t)type_id, byteP); + + if (value != NULL) + ENVPTR->ReleaseByteArrayElements(ENVPAR value, byteP, JNI_ABORT); + + if (status < 0) + h5libraryError(env); + + return status; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1fill_1value */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_fill_value + * Signature: (JJ[B)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1fill_1value(JNIEnv *env, jclass clss, jlong plist_id, jlong type_id, jbyteArray value) +{ + jint status = -1; + jbyte *byteP; + jboolean isCopy; + + if (value == NULL) { + h5badArgument(env, "H5Pget_fill_value: value is NULL"); + } /* end if */ + else { + byteP = ENVPTR->GetByteArrayElements(ENVPAR value, &isCopy); + if (byteP == NULL) { + h5JNIFatalError(env, "H5Pget_fill_value: value array not pinned"); + } /* end if */ + else { + status = H5Pget_fill_value((hid_t)plist_id, (hid_t)type_id, byteP); + if (status < 0) { + ENVPTR->ReleaseByteArrayElements(ENVPAR value, byteP, JNI_ABORT); + h5libraryError(env); + } /* end if */ + else + ENVPTR->ReleaseByteArrayElements(ENVPAR value, byteP, 0); + } /* end else */ + } /* end else */ + + return status; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1fill_1value */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_filter + * Signature: (JIIJ[I)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1filter(JNIEnv *env, jclass clss, jlong plist, jint filter, jint flags, + jlong cd_nelmts, jintArray cd_values) +{ + herr_t status = -1; + jint *theArray; + jboolean isCopy; + + if (cd_values == NULL) { + status = H5Pset_filter((hid_t)plist, (H5Z_filter_t)filter, + (unsigned int)flags, (size_t)cd_nelmts, NULL); + if (status < 0) + h5libraryError(env); + } /* end if */ + else { + theArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR cd_values, &isCopy); + if (theArray == NULL) { + h5JNIFatalError(env, "H5Pset_filter: input array not pinned"); + }/* end if */ + else { + status = H5Pset_filter((hid_t)plist, (H5Z_filter_t)filter, + (unsigned int)flags, (size_t)cd_nelmts, (const unsigned int *)theArray); + ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, theArray, JNI_ABORT); + if (status < 0) + h5libraryError(env); + } /* end else */ + } /* end else */ + + return (jint)status; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1filter */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_nfilters + * Signature: (J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1nfilters(JNIEnv *env, jclass clss, jlong plist) +{ + int retVal = -1; + + retVal = H5Pget_nfilters((hid_t)plist); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1nfilters */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_filter + * Signature: (JI[I[J[IJ[Ljava/lang/String;)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1filter(JNIEnv *env, jclass clss, jlong plist, jint filter_number, jintArray flags, + jlongArray cd_nelmts, jintArray cd_values, jlong namelen, jobjectArray name) +{ + herr_t status = -1; + jint *flagsArray; + jlong *cd_nelmtsArray; + jint *cd_valuesArray; + jboolean isCopy; + jstring str; + char *filter; + + if (namelen <= 0) { + h5badArgument(env, "H5Pget_filter: namelen <= 0"); + } /* end if */ + else if (flags == NULL) { + h5badArgument(env, "H5Pget_filter: flags is NULL"); + } /* end else if */ + else if (cd_nelmts == NULL) { + h5badArgument(env, "H5Pget_filter: cd_nelmts is NULL"); + } /* end else if */ + else if (cd_values == NULL) { + h5badArgument(env, "H5Pget_filter: cd_values is NULL"); + } /* end else if */ + else { + filter = (char *)HDmalloc(sizeof(char)*(size_t)namelen); + if (filter == NULL) { + h5outOfMemory(env, "H5Pget_filter: namelent malloc failed"); + return -1; + } /* end if */ + flagsArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR flags, &isCopy); + if (flagsArray == NULL) { + HDfree(filter); + h5JNIFatalError(env, "H5Pget_filter: flags array not pinned"); + return -1; + } /* end if */ + cd_nelmtsArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR cd_nelmts, &isCopy); + if (cd_nelmtsArray == NULL) { + ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT); + HDfree(filter); + h5JNIFatalError(env, "H5Pget_filter: nelmts array not pinned"); + return -1; + } /* end if */ + cd_valuesArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR cd_values, &isCopy); + if (cd_valuesArray == NULL) { + ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, JNI_ABORT); + ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT); + HDfree(filter); + h5JNIFatalError(env, "H5Pget_filter: elmts array not pinned"); + return -1; + } /* end if */ + + { /* direct cast (size_t *)variable fails on 32-bit environment */ + long long cd_nelmts_temp = *(cd_nelmtsArray); + size_t cd_nelmts_t = (size_t)cd_nelmts_temp; + unsigned int filter_config; + status = H5Pget_filter2((hid_t)plist, (unsigned)filter_number, + (unsigned int *)flagsArray, &cd_nelmts_t, (unsigned int *)cd_valuesArray, + (size_t)namelen, filter, &filter_config); + + *cd_nelmtsArray = (jlong)cd_nelmts_t; + } /* end direct cast special */ + + if (status < 0) { + ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesArray, JNI_ABORT); + ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, JNI_ABORT); + ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT); + HDfree(filter); + h5libraryError(env); + } /* end if */ + else { + ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesArray, 0); + ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, 0); + ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, 0); + + /* NewStringUTF may throw OutOfMemoryError */ + str = ENVPTR->NewStringUTF(ENVPAR filter); + HDfree(filter); + if (str == NULL) { + h5JNIFatalError(env, "H5Pget_filter: return string not pinned"); + } /* end if */ + else { + /* SetObjectArrayElement may throw exceptiosn */ + ENVPTR->SetObjectArrayElement(ENVPAR name, 0, (jobject)str); + } /* end else */ + } /* end else */ + } /* end else */ + + return (jint)status; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1filter */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_driver + * Signature: (J)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1driver(JNIEnv *env, jclass clss, jlong plist) +{ + hid_t retVal = -1; + + retVal = H5Pget_driver((hid_t) plist); + if (retVal < 0) + h5libraryError(env); + + return (jlong)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1driver */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_cache + * Signature: (JIJJD)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1cache(JNIEnv *env, jclass clss, jlong plist, jint mdc_nelmts, jlong rdcc_nelmts, + jlong rdcc_nbytes, jdouble rdcc_w0) +{ + herr_t retVal = -1; + + retVal = H5Pset_cache((hid_t)plist, (int)mdc_nelmts, (size_t)rdcc_nelmts, + (size_t)rdcc_nbytes, (double) rdcc_w0); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1cache */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_cache + * Signature: (J[I[J[J[D)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1cache(JNIEnv *env, jclass clss, jlong plist, jintArray mdc_nelmts, + jlongArray rdcc_nelmts, jlongArray rdcc_nbytes, jdoubleArray rdcc_w0) +{ + herr_t status = -1; + jint mode; + jdouble *w0Array; + jlong *rdcc_nelmtsArray; + jlong *nbytesArray; + jboolean isCopy; + + if (rdcc_w0 == NULL) { + w0Array = (jdouble *)NULL; + } /* end if */ + else { + w0Array = (jdouble *)ENVPTR->GetDoubleArrayElements(ENVPAR rdcc_w0, &isCopy); + if (w0Array == NULL) { + h5JNIFatalError(env, "H5Pget_cache: w0_array array not pinned"); + return -1; + } /* end if */ + } /* end else */ + + if (rdcc_nelmts == NULL) { + rdcc_nelmtsArray = (jlong *) NULL; + } /* end if */ + else { + rdcc_nelmtsArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR rdcc_nelmts, &isCopy); + if (rdcc_nelmtsArray == NULL) { + /* exception -- out of memory */ + if (w0Array != NULL) { + ENVPTR->ReleaseDoubleArrayElements(ENVPAR rdcc_w0, w0Array, JNI_ABORT); + } + h5JNIFatalError(env, "H5Pget_cache: rdcc_nelmts array not pinned"); + return -1; + } /* end if */ + } /* end else */ + + if (rdcc_nbytes == NULL) { + nbytesArray = (jlong *) NULL; + } /* end if */ + else { + nbytesArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR rdcc_nbytes, &isCopy); + if (nbytesArray == NULL) { + if (w0Array != NULL) { + ENVPTR->ReleaseDoubleArrayElements(ENVPAR rdcc_w0, w0Array, JNI_ABORT); + } /* end if */ + if (rdcc_nelmtsArray != NULL) { + ENVPTR->ReleaseLongArrayElements(ENVPAR rdcc_nelmts, rdcc_nelmtsArray, JNI_ABORT); + } /* end if */ + h5JNIFatalError(env, "H5Pget_cache: nbytesArray array not pinned"); + return -1; + } /* end if */ + } /* end else */ + + { /* direct cast (size_t *)variable fails on 32-bit environment */ + long long rdcc_nelmts_temp = *(rdcc_nelmtsArray); + size_t rdcc_nelmts_t = (size_t)rdcc_nelmts_temp; + long long nbytes_temp = *(nbytesArray); + size_t nbytes_t = (size_t)nbytes_temp; + + status = H5Pget_cache((hid_t)plist, (int *)NULL, &rdcc_nelmts_t, + &nbytes_t, (double *)w0Array); + + *rdcc_nelmtsArray = (jlong)rdcc_nelmts_t; + *nbytesArray = (jlong)nbytes_t; + } /* end direct cast special */ + + + if (status < 0) { + mode = JNI_ABORT; + } /* end if */ + else { + mode = 0; /* commit and free */ + } /* end else */ + + if (rdcc_nelmtsArray != NULL) { + ENVPTR->ReleaseLongArrayElements(ENVPAR rdcc_nelmts, rdcc_nelmtsArray, mode); + } /* end if */ + + if (nbytesArray != NULL) { + ENVPTR->ReleaseLongArrayElements(ENVPAR rdcc_nbytes, nbytesArray, mode); + } /* end if */ + + if (w0Array != NULL) { + ENVPTR->ReleaseDoubleArrayElements(ENVPAR rdcc_w0, w0Array, mode); + } /* end if */ + + if (status < 0) { + h5libraryError(env); + } /* end if */ + + return (jint)status; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1cache */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_buffer + * Signature: (JJ[B[B)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1buffer(JNIEnv *env, jclass clss, jlong plist, jlong size, jbyteArray tconv, jbyteArray bkg) +{ + h5unimplemented(env, "H5Pset_buffer: not implemented"); + return -1; +#ifdef notdef + +/* DON'T IMPLEMENT THIS!!! */ + jint status = -1; + jbyte *tconvP; + jbyte *bkgP; + jboolean isCopy; + + if (tconv == NULL) + tconvP = (jbyte *)NULL; + else { + tconvP = ENVPTR->GetByteArrayElements(ENVPAR tconv, &isCopy); + if (tconvP == NULL) { + h5JNIFatalError(env, "H5Pset_buffer: tconv not pinned"); + return -1; + } + } + if (bkg == NULL) + bkgP = (jbyte *)NULL; + else { + bkgP = ENVPTR->GetByteArrayElements(ENVPAR bkg, &isCopy); + if (bkgP == NULL) { + h5JNIFatalError(env, "H5Pset_buffer: bkg not pinned"); + return -1; + } + } + + status = H5Pset_buffer((hid_t)plist, (size_t)size, tconvP, bkgP); + if (status < 0) { + if (tconv != NULL) + ENVPTR->ReleaseByteArrayElements(ENVPAR tconv, tconvP, JNI_ABORT); + if (bkg != NULL) + ENVPTR->ReleaseByteArrayElements(ENVPAR bkg, bkgP, JNI_ABORT); + h5libraryError(env); + return -1; + } + + if (tconv != NULL) + ENVPTR->ReleaseByteArrayElements(ENVPAR tconv, tconvP, 0); + if (bkg != NULL) + ENVPTR->ReleaseByteArrayElements(ENVPAR bkg, bkgP, 0); + + return status; +#endif +} /* end Java_hdf_hdf5lib_H5_H5Pset_1buffer */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_buffer + * Signature: (J[B[B)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1buffer(JNIEnv *env, jclass clss, jlong plist, jbyteArray tconv, jbyteArray bkg) +{ + h5unimplemented(env, "H5Pget_buffer: not implemented"); + return -1; +#ifdef notdef + +/* DON'T IMPLEMENT THIS!!! */ + jlong status = -1; + jbyte *tconvP; + jbyte *bkgP; + jboolean isCopy; + + if (tconv == NULL) { + h5nullArgument(env, "H5Pget_buffer: tconv input array is NULL"); + return -1; + } + tconvP = ENVPTR->GetByteArrayElements(ENVPAR tconv, &isCopy); + if (tconvP == NULL) { + h5JNIFatalError(env, "H5Pget_buffer: tconv not pinned"); + return -1; + } + if (bkg == NULL) { + h5nullArgument(env, "H5Pget_buffer: bkg array is NULL"); + return -1; + } + bkgP = ENVPTR->GetByteArrayElements(ENVPAR bkg, &isCopy); + if (bkgP == NULL) { + h5JNIFatalError(env, "H5Pget_buffer: bkg not pinned"); + return -1; + } + + status = H5Pget_buffer((hid_t)plist, tconvP, bkgP); + if (status < 0) { + ENVPTR->ReleaseByteArrayElements(ENVPAR tconv, tconvP, JNI_ABORT); + ENVPTR->ReleaseByteArrayElements(ENVPAR bkg, bkgP, JNI_ABORT); + h5libraryError(env); + return -1; + } + ENVPTR->ReleaseByteArrayElements(ENVPAR tconv, tconvP, 0); + ENVPTR->ReleaseByteArrayElements(ENVPAR bkg, bkgP, 0); + + return status; +#endif +} /* end Java_hdf_hdf5lib_H5_H5Pget_1buffer */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_buffer_size + * Signature: (JJ)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1buffer_1size(JNIEnv *env, jclass clss, jlong plist, jlong size) +{ + if (H5Pset_buffer((hid_t)plist, (size_t)size, NULL, NULL) < 0) + h5libraryError(env); +} /* end Java_hdf_hdf5lib_H5_H5Pset_1buffer_1size */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_buffer_size + * Signature: (J)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1buffer_1size(JNIEnv *env, jclass clss, jlong plist) +{ + size_t size = 0; + + size = H5Pget_buffer((hid_t)plist, NULL, NULL); + if (size == 0) + h5libraryError(env); + + return (jlong)size; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1buffer_1size */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_preserve + * Signature: (JZ)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1preserve(JNIEnv *env, jclass clss, jlong plist, jboolean status) +{ + hbool_t st; + herr_t retVal = -1; + + if (status == JNI_TRUE) { + st = TRUE; + } /* end if */ + else if (status == JNI_FALSE) { + st = false; + } /* end else if */ + else { + h5badArgument(env, "H5Pset_preserve: status not TRUE or FALSE"); + return -1; + } /* end else */ + + retVal = H5Pset_preserve((hid_t)plist, st); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1preserve */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_preserve + * Signature: (J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1preserve(JNIEnv *env, jclass clss, jlong plist) +{ + herr_t retVal = -1; + + retVal = H5Pget_preserve((hid_t)plist); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1preserve */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_deflate + * Signature: (JI)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1deflate(JNIEnv *env, jclass clss, jlong plist, jint level) +{ + herr_t retVal = -1; + + retVal = H5Pset_deflate((hid_t)plist, (unsigned)level); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1deflate */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_gc_references + * Signature: (JZ)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1gc_1references(JNIEnv *env, jclass clss, jlong fapl_id, jboolean gc_ref) +{ + herr_t retVal = -1; + unsigned gc_ref_val; + + if (gc_ref == JNI_TRUE) + gc_ref_val = 1; + else + gc_ref_val = 0; + + retVal = H5Pset_gc_references((hid_t)fapl_id, gc_ref_val); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1gc_1references */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_gc_references + * Signature: (J)Z + */ +JNIEXPORT jboolean JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1gc_1references(JNIEnv *env, jclass clss, jlong fapl_id) +{ + unsigned gc_ref_val = 0; + jboolean bval = JNI_FALSE; + + if (H5Pget_gc_references((hid_t)fapl_id, (unsigned *)&gc_ref_val) < 0) { + h5libraryError(env); + } /* end if */ + else { + if (gc_ref_val == 1) + bval = JNI_TRUE; + } /* end else */ + + return bval; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1gc_1references */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_btree_ratios + * Signature: (JDDD)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1btree_1ratios(JNIEnv *env, jclass clss, jlong plist_id, jdouble left, jdouble middle, jdouble right) +{ + herr_t status = -1; + + status = H5Pset_btree_ratios((hid_t)plist_id, (double)left,(double)middle, (double)right); + if (status < 0) + h5libraryError(env); + + return (jint)status; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1btree_1ratios */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_btree_ratios + * Signature: (J[D[D[D)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1btree_1ratios(JNIEnv *env, jclass clss, jlong plist_id, jdoubleArray left, + jdoubleArray middle, jdoubleArray right) +{ + herr_t status = -1; + jdouble *leftP; + jdouble *middleP; + jdouble *rightP; + jboolean isCopy; + + if (left == NULL) { + h5nullArgument(env, "H5Pget_btree_ratios: left input array is NULL"); + } /* end if */ + else if (middle == NULL) { + h5nullArgument(env, "H5Pget_btree_ratios: middle input array is NULL"); + } /* end else if */ + else if (right == NULL) { + h5nullArgument(env, "H5Pget_btree_ratios: right input array is NULL"); + } /* end else if */ + else { + leftP = (jdouble *)ENVPTR->GetDoubleArrayElements(ENVPAR left, &isCopy); + if (leftP == NULL) { + h5JNIFatalError(env, "H5Pget_btree_ratios: left not pinned"); + } /* end if */ + else { + middleP = (jdouble *)ENVPTR->GetDoubleArrayElements(ENVPAR middle, &isCopy); + if (middleP == NULL) { + ENVPTR->ReleaseDoubleArrayElements(ENVPAR left, leftP, JNI_ABORT); + h5JNIFatalError(env, "H5Pget_btree_ratios: middle not pinned"); + } /* end if */ + else { + rightP = (jdouble *)ENVPTR->GetDoubleArrayElements(ENVPAR right, &isCopy); + if (rightP == NULL) { + ENVPTR->ReleaseDoubleArrayElements(ENVPAR left, leftP, JNI_ABORT); + ENVPTR->ReleaseDoubleArrayElements(ENVPAR middle, middleP, JNI_ABORT); + h5JNIFatalError(env, "H5Pget_btree_ratios: middle not pinned"); + } /* end if */ + else { + status = H5Pget_btree_ratios((hid_t)plist_id, (double *)leftP, + (double *)middleP, (double *)rightP); + if (status < 0) { + ENVPTR->ReleaseDoubleArrayElements(ENVPAR left, leftP, JNI_ABORT); + ENVPTR->ReleaseDoubleArrayElements(ENVPAR middle, middleP, JNI_ABORT); + ENVPTR->ReleaseDoubleArrayElements(ENVPAR right, rightP, JNI_ABORT); + h5libraryError(env); + } /* end if */ + else { + ENVPTR->ReleaseDoubleArrayElements(ENVPAR left, leftP, 0); + ENVPTR->ReleaseDoubleArrayElements(ENVPAR middle, middleP, 0); + ENVPTR->ReleaseDoubleArrayElements(ENVPAR right, rightP, 0); + } /* end else */ + } /* end else */ + } /* end else */ + } /* end else */ + } /* end else */ + + return (jint)status; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1btree_1ratios */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_small_data_block_size + * Signature: (JJ)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1small_1data_1block_1size(JNIEnv *env, jclass clss, jlong plist, jlong size) +{ + long sz = (long)size; + herr_t retVal = -1; + + retVal = H5Pset_small_data_block_size((hid_t)plist, (hsize_t)sz); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1small_1data_1block_1size */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_small_data_block_size + * Signature: (J)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1small_1data_1block_1size(JNIEnv *env, jclass clss, jlong plist) +{ + hsize_t s; + + if (H5Pget_small_data_block_size((hid_t)plist, &s) < 0) + h5libraryError(env); + + return (jlong)s; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1small_1data_1block_1size */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_alloc_time + * Signature: (JI)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1alloc_1time(JNIEnv *env, jclass clss, jlong plist, jint alloc_time) +{ + herr_t retVal = -1; + + retVal = H5Pset_alloc_time((hid_t)plist, (H5D_alloc_time_t)alloc_time); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1alloc_1time */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_alloc_time + * Signature: (J[I)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1alloc_1time(JNIEnv *env, jclass clss, jlong plist, jintArray alloc_time) +{ + herr_t retVal = -1; + jint *theArray; + jboolean isCopy; + H5D_alloc_time_t time; + + if (alloc_time == NULL) { + /* exception ? */ + h5nullArgument(env, "H5Pget_alloc_time: alloc_time is NULL"); + } /* end if */ + else { + theArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR alloc_time, &isCopy); + if (theArray == NULL) { + h5JNIFatalError(env, "H5Pget_alloc_time: alloc_time not pinned"); + } /* end if */ + else { + retVal = H5Pget_alloc_time((hid_t)plist, &time); + if (retVal < 0) { + ENVPTR->ReleaseIntArrayElements(ENVPAR alloc_time, theArray, JNI_ABORT); + h5libraryError(env); + } /* end if */ + else { + theArray[0] = time; + ENVPTR->ReleaseIntArrayElements(ENVPAR alloc_time, theArray, 0); + } /* end else */ + } /* end else */ + } /* end else */ + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1alloc_1time */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_fill_time + * Signature: (JI)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1fill_1time(JNIEnv *env, jclass clss, jlong plist, jint fill_time) +{ + herr_t retVal = -1; + + retVal = H5Pset_fill_time((hid_t)plist, (H5D_fill_time_t)fill_time); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1fill_1time */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_fill_time + * Signature: (J[I)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1fill_1time(JNIEnv *env, jclass clss, jlong plist, jintArray fill_time) +{ + herr_t retVal = -1; + jint *theArray; + jboolean isCopy; + H5D_fill_time_t time; + + if (fill_time == NULL) { + /* exception ? */ + h5nullArgument(env, "H5Pget_fill_time: fill_time is NULL"); + } /* end if */ + else { + theArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR fill_time, &isCopy); + if (theArray == NULL) { + h5JNIFatalError(env, "H5Pget_fill_time: fill_time not pinned"); + } /* end if */ + else { + retVal = H5Pget_fill_time((hid_t)plist, &time); + if (retVal < 0) { + ENVPTR->ReleaseIntArrayElements(ENVPAR fill_time, theArray, JNI_ABORT); + h5libraryError(env); + } /* end if */ + else { + theArray[0] = (jint)time; + ENVPTR->ReleaseIntArrayElements(ENVPAR fill_time, theArray, 0); + } /* end else */ + } /* end else */ + } /* end else */ + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1fill_1time */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pfill_value_defined + * Signature: (J[I)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pfill_1value_1defined(JNIEnv *env, jclass clss, jlong plist, jintArray status) +{ + herr_t retVal = -1; + jint *theArray; + jboolean isCopy; + H5D_fill_value_t value; + + if (status == NULL) { + /* exception ? */ + h5nullArgument(env, "H5Pfill_value_defined: status is NULL"); + } /* end if */ + else { + theArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR status, &isCopy); + if (theArray == NULL) { + h5JNIFatalError(env, "H5Pfill_value_defined: status not pinned"); + } /* end if */ + else { + retVal = H5Pfill_value_defined((hid_t)plist, &value); + if (retVal < 0) { + ENVPTR->ReleaseIntArrayElements(ENVPAR status, theArray, JNI_ABORT); + h5libraryError(env); + } /* end if */ + else { + theArray[0] = value; + ENVPTR->ReleaseIntArrayElements(ENVPAR status, theArray, 0); + } /* end else */ + } /* end else */ + } /* end else */ + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pfill_1value_1defined */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_fletcher32 + * Signature: (J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1fletcher32(JNIEnv *env, jclass clss, jlong plist) +{ + herr_t retVal = -1; + + retVal = H5Pset_fletcher32((hid_t)plist); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1fletcher32 */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_edc_check + * Signature: (JI)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1edc_1check(JNIEnv *env, jclass clss, jlong plist, jint check) +{ + herr_t retVal = -1; + + retVal = H5Pset_edc_check((hid_t)plist, (H5Z_EDC_t)check); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1edc_1check */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_edc_check + * Signature: (J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1edc_1check(JNIEnv *env, jclass clss, jlong plist) +{ + H5Z_EDC_t retVal = -1; + + retVal = H5Pget_edc_check((hid_t)plist); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1edc_1check */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_shuffle + * Signature: (J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1shuffle(JNIEnv *env, jclass clss, jlong plist) +{ + herr_t retVal = -1; + + retVal = H5Pset_shuffle((hid_t)plist); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1shuffle */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_szip + * Signature: (JII)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1szip(JNIEnv *env, jclass clss, jlong plist, jint options_mask, jint pixels_per_block) +{ + herr_t retVal = -1; + + retVal = H5Pset_szip((hid_t)plist, (unsigned int)options_mask, (unsigned int)pixels_per_block); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1szip */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_hyper_vector_size + * Signature: (JJ)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1hyper_1vector_1size(JNIEnv *env, jclass clss, jlong plist, jlong vector_size) +{ + herr_t retVal = -1; + + retVal = H5Pset_hyper_vector_size((hid_t)plist, (size_t)vector_size); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1hyper_1vector_1size */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_hyper_vector_size + * Signature: (J[J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1hyper_1vector_1size(JNIEnv *env, jclass clss, jlong plist, jlongArray vector_size) +{ + herr_t retVal = -1; + jlong *theArray; + size_t size; + jboolean isCopy; + + if (vector_size == NULL) { + /* exception ? */ + h5nullArgument(env, "H5Pget_hyper_vector_size: vector_size is NULL"); + } /* end if */ + else { + theArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR vector_size, &isCopy); + if (theArray == NULL) { + h5JNIFatalError(env, "H5Pget_hyper_vector_size: vector_size not pinned"); + } /* end if */ + else { + retVal = H5Pget_hyper_vector_size((hid_t)plist, &size); + if (retVal < 0) { + ENVPTR->ReleaseLongArrayElements(ENVPAR vector_size, theArray, JNI_ABORT); + h5libraryError(env); + } /* end if */ + else { + theArray[0] = (jlong)size; + ENVPTR->ReleaseLongArrayElements(ENVPAR vector_size, theArray, 0); + } /* end else */ + } /* end else */ + } /* end else */ + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1hyper_1vector_1size */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pall_filters_avail + * Signature: (J)Z + */ +JNIEXPORT jboolean JNICALL +Java_hdf_hdf5lib_H5_H5Pall_1filters_1avail(JNIEnv *env, jclass clss, jlong dcpl_id) +{ + htri_t bval = JNI_FALSE; + + bval = H5Pall_filters_avail((hid_t)dcpl_id); + if (bval > 0) + bval = JNI_TRUE; + else if (bval < 0) + h5libraryError(env); + + return (jboolean)bval; +} /* end Java_hdf_hdf5lib_H5_H5Pall_1filters_1avail */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pmodify_filter + * Signature: (JIIJ[I)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pmodify_1filter(JNIEnv *env, jclass clss, jlong plist, jint filter, + jint flags, jlong cd_nelmts, jintArray cd_values) +{ + herr_t status = -1; + jint *cd_valuesP; + jboolean isCopy; + + if (cd_values == NULL) { + h5nullArgument(env, "H5Pmodify_filter: cd_values is NULL"); + } /* end if */ + else { + cd_valuesP = ENVPTR->GetIntArrayElements(ENVPAR cd_values,&isCopy); + if (cd_valuesP == NULL) { + h5JNIFatalError(env, "H5Pmodify_filter: cd_values not pinned"); + } /* end if */ + else { + status = H5Pmodify_filter((hid_t)plist, (H5Z_filter_t)filter,(const unsigned int)flags, + (size_t)cd_nelmts, (unsigned int *)cd_valuesP); + + ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesP, JNI_ABORT); + + if (status < 0) + h5libraryError(env); + } /* end else */ + } /* end else */ + + return (jint)status; +} /* end Java_hdf_hdf5lib_H5_H5Pmodify_1filter */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_filter_by_id + * Signature: (JI[I[J[IJ[Ljava/lang/String;)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id(JNIEnv *env, jclass clss, jlong plist, jint filter, + jintArray flags, jlongArray cd_nelmts, jintArray cd_values, jlong namelen, jobjectArray name) +{ + jboolean isCopy; + herr_t status = -1; + jint *cd_valuesArray; + jint *flagsArray; + jlong *cd_nelmtsArray; + jstring str; + char *aName; + int i = 0; + int rank; + long bs; + + bs = (long)namelen; + if (bs <= 0) { + h5badArgument(env, "H5Pget_filter_by_id: namelen <= 0"); + } /* end if */ + else if (flags == NULL) { + h5nullArgument(env, "H5Pget_filter_by_id: flags is NULL"); + } /* end else if */ + else if (cd_nelmts == NULL) { + h5nullArgument(env, "H5Pget_filter_by_id: cd_nelms is NULL"); + } /* end else if */ + else if (cd_values == NULL) { + h5nullArgument(env, "H5Pget_filter_by_id: cd_values is NULL"); + } /* end else if */ + else if (name == NULL) { + h5nullArgument(env, "H5Pget_filter_by_id: name is NULL"); + } /* end else if */ + else { + aName = (char*)HDmalloc(sizeof(char) * (size_t)bs); + if (aName == NULL) { + h5outOfMemory(env, "H5Pget_filter_by_id: malloc failed"); + return -1; + } /* end if */ + + flagsArray = ENVPTR->GetIntArrayElements(ENVPAR flags, &isCopy); + if (flagsArray == NULL) { + HDfree(aName); + h5JNIFatalError(env, "H5Pget_filter_by_id: flags not pinned"); + return -1; + } /* end if */ + + cd_nelmtsArray = ENVPTR->GetLongArrayElements(ENVPAR cd_nelmts, &isCopy); + if (cd_nelmtsArray == NULL) { + ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT); + HDfree(aName); + h5JNIFatalError(env, "H5Pget_filter_by_id: cd_nelms not pinned"); + return -1; + } /* end if */ + + cd_valuesArray = ENVPTR->GetIntArrayElements(ENVPAR cd_values, &isCopy); + rank = ENVPTR->GetArrayLength(ENVPAR cd_values); + if (cd_valuesArray == NULL) { + ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT); + ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, JNI_ABORT); + ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesArray, JNI_ABORT); + HDfree(aName); + h5JNIFatalError(env, "H5Pget_filter_by_id: cd_values array not converted to unsigned int."); + return -1; + } /* end if */ + + { /* direct cast (size_t *)variable fails on 32-bit environment */ + long long cd_nelmts_temp = *(cd_nelmtsArray); + size_t cd_nelmts_t = (size_t)cd_nelmts_temp; + unsigned int filter_config; + + status = H5Pget_filter_by_id2( (hid_t)plist, (H5Z_filter_t)filter, + (unsigned int *)flagsArray, &cd_nelmts_t, (unsigned int *)cd_valuesArray, + (size_t)namelen, (char *)aName, &filter_config); + + *cd_nelmtsArray = (jlong)cd_nelmts_t; + } /* end direct cast special */ + + if (status < 0) { + ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT); + ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, JNI_ABORT); + ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesArray, JNI_ABORT); + HDfree(aName); + h5libraryError(env); + } /* end if */ + else { + str = ENVPTR->NewStringUTF(ENVPAR aName); + ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, 0); + ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, 0); + ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesArray, 0); + + HDfree(aName); + } /* end else */ + } /* end else */ + + return (jint)status; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_fclose_degree + * Signature: (JI)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1fclose_1degree(JNIEnv *env, jclass clss, jlong plist, jint fc_degree) +{ + herr_t retVal = -1; + + retVal = H5Pset_fclose_degree((hid_t)plist, (H5F_close_degree_t)fc_degree); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1fclose_1degree */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_fclose_degree + * Signature: (J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1fclose_1degree(JNIEnv *env, jclass clss, jlong plist) +{ + H5F_close_degree_t degree; + + if (H5Pget_fclose_degree((hid_t)plist, °ree) < 0) + h5libraryError(env); + + return (jint)degree; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1fclose_1degree */ + + +/********************************************************************** + * * + * File access properties * + * * + **********************************************************************/ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_fapl_family + * Signature: (JJJ)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1fapl_1family(JNIEnv *env, jclass clss, jlong plist, jlong memb_size, jlong memb_plist) +{ + long ms = (long)memb_size; + herr_t retVal = -1; + + retVal = H5Pset_fapl_family((hid_t)plist, (hsize_t)ms, (hid_t)memb_plist); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1family */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_fapl_family + * Signature: (J[J[J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1fapl_1family(JNIEnv *env, jclass clss, jlong tid, jlongArray memb_size, jlongArray memb_plist) +{ + herr_t status = -1; + jlong *sizeArray; + jlong *plistArray; + jboolean isCopy; + hsize_t *sa; + size_t i; + size_t rank; + + if (memb_size == NULL) { + h5nullArgument(env, "H5Pget_family: memb_size is NULL"); + } /* end if */ + else if (memb_plist == NULL) { + h5nullArgument(env, "H5Pget_family: memb_plist is NULL"); + } /* end else if */ + else { + sizeArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR memb_size, &isCopy); + if (sizeArray == NULL) { + h5JNIFatalError(env, "H5Pget_family: sizeArray not pinned"); + return -1; + } /* end if */ + rank = (size_t)ENVPTR->GetArrayLength(ENVPAR memb_size); + sa = (hsize_t *)HDmalloc(rank * sizeof(hsize_t)); + if (sa == NULL) { + ENVPTR->ReleaseLongArrayElements(ENVPAR memb_size, sizeArray, JNI_ABORT); + h5JNIFatalError(env, "H5Screate-simple: dims not converted to hsize_t"); + return -1; + } /* end if */ + plistArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR memb_plist, &isCopy); + if (plistArray == NULL) { + HDfree(sa); + ENVPTR->ReleaseLongArrayElements(ENVPAR memb_size, sizeArray, JNI_ABORT); + h5JNIFatalError(env, "H5Pget_family: plistArray not pinned"); + return -1; + } /* end if */ + + status = H5Pget_fapl_family ((hid_t)tid, sa, (hid_t *)plistArray); + + if (status < 0) { + HDfree(sa); + ENVPTR->ReleaseLongArrayElements(ENVPAR memb_size, sizeArray, JNI_ABORT); + ENVPTR->ReleaseLongArrayElements(ENVPAR memb_plist, plistArray, JNI_ABORT); + h5libraryError(env); + } /* end if */ + else { + for (i = 0; i < rank; i++) { + sizeArray[i] = (jlong)sa[i]; + } /* end for */ + HDfree(sa); + ENVPTR->ReleaseLongArrayElements(ENVPAR memb_size, sizeArray, 0); + ENVPTR->ReleaseLongArrayElements(ENVPAR memb_plist, plistArray, 0); + } /* end else */ + } /* end else */ + + return (jint)status; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1fapl_1family */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_fapl_core + * Signature: (JJZ)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1fapl_1core(JNIEnv *env, jclass clss, jlong fapl_id, jlong increment, jboolean backing_store) +{ + herr_t retVal = -1; + + retVal = H5Pset_fapl_core((hid_t)fapl_id, (size_t)increment, (hbool_t)backing_store); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1core */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_fapl_core + * Signature: (J[J[Z)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1fapl_1core(JNIEnv *env, jclass clss, jlong fapl_id, jlongArray increment, jbooleanArray backing_store) +{ + herr_t status = -1; + jlong *incArray; + jboolean *backArray; + jboolean isCopy; + + if (increment == NULL) { + h5nullArgument(env, "H5Pget_fapl_core: increment is NULL"); + } /* end if */ + else if (backing_store == NULL) { + h5nullArgument(env, "H5Pget_fapl_core: backing_store is NULL"); + } /* end else if */ + else { + incArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR increment, &isCopy); + if (incArray == NULL) { + h5JNIFatalError(env, "H5Pget_fapl_core: incArray not pinned"); + return -1; + } /* end if */ + + backArray = (jboolean *)ENVPTR->GetBooleanArrayElements(ENVPAR backing_store, &isCopy); + if (backArray == NULL) { + ENVPTR->ReleaseLongArrayElements(ENVPAR increment, incArray, JNI_ABORT); + h5JNIFatalError(env, "H5Pget_fapl_core: backArray not pinned"); + return -1; + } /* end if */ + + { /* direct cast (size_t *)variable fails on 32-bit environment */ + long long inc_temp = *(incArray); + size_t inc_t = (size_t)inc_temp; + + status = H5Pget_fapl_core((hid_t)fapl_id, &inc_t, (hbool_t *)backArray); + + *incArray = (jlong)inc_t; + } /* end direct cast special */ + + if (status < 0) { + ENVPTR->ReleaseLongArrayElements(ENVPAR increment, incArray, JNI_ABORT); + ENVPTR->ReleaseBooleanArrayElements(ENVPAR backing_store, backArray, JNI_ABORT); + h5libraryError(env); + } /* end if */ + else { + ENVPTR->ReleaseLongArrayElements(ENVPAR increment, incArray, 0); + ENVPTR->ReleaseBooleanArrayElements(ENVPAR backing_store, backArray, 0); + } /* end else */ + } /* end else */ + + return (jint)status; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1fapl_1core */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_family_offset + * Signature: (JJ)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1family_1offset(JNIEnv *env, jclass clss, jlong fapl_id, jlong offset) +{ + herr_t retVal = -1; + + retVal = H5Pset_family_offset ((hid_t)fapl_id, (hsize_t)offset); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1family_1offset */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_family_offset + * Signature: (J)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1family_1offset(JNIEnv *env, jclass clss, jlong fapl_id) +{ + hsize_t offset = 0; + herr_t retVal = -1; + + retVal = H5Pget_family_offset ((hid_t)fapl_id, &offset); + if (retVal < 0) + h5libraryError(env); + + return (jlong)offset; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1family_1offset */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_fapl_log + * Signature: (JLjava/lang/String;JJ)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1fapl_1log(JNIEnv *env, jclass clss, jlong fapl_id, jstring logfile, jlong flags, jlong buf_size) +{ + herr_t retVal = -1; + const char *pLogfile; + + PIN_JAVA_STRING0(logfile, pLogfile); + + retVal = H5Pset_fapl_log( (hid_t)fapl_id, pLogfile, (unsigned long long)flags, (size_t)buf_size ); + + UNPIN_JAVA_STRING(logfile, pLogfile); + + if (retVal < 0) + h5libraryError(env); +} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1log */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Premove_filter + * Signature: (JI)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5P1remove_1filter(JNIEnv *env, jclass clss, jlong obj_id, jint filter) +{ + herr_t status = -1; + + status = H5Premove_filter ((hid_t)obj_id, (H5Z_filter_t)filter); + if (status < 0) + h5libraryError(env); + + return status; +} /* end Java_hdf_hdf5lib_H5_H5P1remove_1filter */ + + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset + * Signature: (JLjava/lang/String;I)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5Pset(JNIEnv *env, jclass clss, jlong plid, jstring name, jint val) +{ + hid_t retVal = -1; + const char *cstr; + + PIN_JAVA_STRING(name, cstr, -1); + + retVal = H5Pset((hid_t)plid, cstr, &val); + + UNPIN_JAVA_STRING(name, cstr); + + if (retVal < 0) + h5libraryError(env); + + return (jlong)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pexist + * Signature: (JLjava/lang/String;)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5Pexist(JNIEnv *env, jclass clss, jlong plid, jstring name) +{ + hid_t retVal = -1; + const char *cstr; + + PIN_JAVA_STRING(name, cstr, -1); + + retVal = H5Pexist((hid_t)plid, cstr); + + UNPIN_JAVA_STRING(name, cstr); + + if (retVal < 0) + h5libraryError(env); + + return (jlong)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pexist */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_size + * Signature: (JLjava/lang/String;)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1size(JNIEnv *env, jclass clss, jlong plid, jstring name) +{ + hid_t retVal = -1; + const char *cstr; + size_t size; + + PIN_JAVA_STRING(name, cstr, -1); + + retVal = H5Pget_size((hid_t)plid, cstr, &size); + + UNPIN_JAVA_STRING(name, cstr); + + if (retVal < 0) + h5libraryError(env); + + return (jlong) size; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1size */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_nprops + * Signature: (J)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1nprops(JNIEnv *env, jclass clss, jlong plid) +{ + size_t nprops; + + if (H5Pget_nprops((hid_t)plid, &nprops) < 0) + h5libraryError(env); + + return (jlong)nprops; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1nprops */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_class_name + * Signature: (J)Ljava/lang/String; + */ +JNIEXPORT jstring JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1class_1name(JNIEnv *env, jclass clss, jlong plid) +{ + char *c_str; + jstring j_str; + + c_str = H5Pget_class_name((hid_t)plid); + if (c_str == NULL) { + h5libraryError(env); + } /* end if */ + else { + j_str = ENVPTR->NewStringUTF(ENVPAR c_str); + H5free_memory(c_str); + + if (j_str == NULL) + h5JNIFatalError(env,"H5Pget_class_name: return string failed"); + } /* end else */ + return j_str; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1class_1name */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_class_parent + * Signature: (J)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1class_1parent(JNIEnv *env, jclass clss, jlong plid) +{ + hid_t retVal = -1; + + retVal = H5Pget_class_parent((hid_t)plid); + if (retVal < 0) + h5libraryError(env); + + return (jlong)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1class_1parent */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pisa_class + * Signature: (JJ)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pisa_1class(JNIEnv *env, jclass clss, jlong plid, jlong pcls) +{ + htri_t retVal = -1; + + retVal = H5Pisa_class((hid_t)plid, (hid_t)pcls); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pisa_1class */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget + * Signature: (JLjava/lang/String;)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget(JNIEnv *env, jclass clss, jlong plid, jstring name) +{ + herr_t retVal = -1; + const char *cstr; + jint val; + + PIN_JAVA_STRING(name, cstr, -1); + + retVal = H5Pget((hid_t)plid, cstr, &val); + + UNPIN_JAVA_STRING(name, cstr); + + if (retVal < 0) + h5libraryError(env); + + return (jint)val; +} /* end Java_hdf_hdf5lib_H5_H5Pget */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pequal + * Signature: (JJ)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pequal(JNIEnv *env, jclass clss, jlong plid1, jlong plid2) +{ + htri_t retVal = -1; + + retVal = H5Pequal((hid_t)plid1, (hid_t)plid2); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pequal */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pcopy_prop + * Signature: (JJLjava/lang/String;)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pcopy_1prop(JNIEnv *env, jclass clss, jlong dst_plid, jlong src_plid, jstring name) +{ + herr_t retVal = -1; + const char *cstr; + + PIN_JAVA_STRING(name, cstr, -1); + + retVal = H5Pcopy_prop((hid_t)dst_plid, (hid_t)src_plid, cstr); + + UNPIN_JAVA_STRING(name, cstr); + + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pcopy_1prop */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Premove + * Signature: (JLjava/lang/String;)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Premove(JNIEnv *env, jclass clss, jlong plid, jstring name) +{ + herr_t retVal = -1; + const char *cstr; + + PIN_JAVA_STRING(name, cstr, -1); + + retVal = H5Premove((hid_t)plid, cstr); + + UNPIN_JAVA_STRING(name, cstr); + + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Premove */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Punregister + * Signature: (JLjava/lang/String;)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Punregister(JNIEnv *env, jclass clss, jlong plid, jstring name) +{ + herr_t retVal = -1; + const char *cstr; + + PIN_JAVA_STRING(name, cstr, -1); + + retVal = H5Punregister((hid_t)plid, cstr); + + UNPIN_JAVA_STRING(name, cstr); + + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Punregister */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: _H5Pclose_class + * Signature: (J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5__1H5Pclose_1class(JNIEnv *env, jclass clss, jlong plid) +{ + herr_t retVal = -1; + + retVal = H5Pclose_class((hid_t)plid); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1filter2 */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_filter2 + * Signature: (JI[I[J[IJ[Ljava/lang/String;[I)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1filter2(JNIEnv *env, jclass clss, jlong plist, jint filter_number, + jintArray flags, jlongArray cd_nelmts, jintArray cd_values, jlong namelen, + jobjectArray name, jintArray filter_config) +{ + herr_t status = -1; + jint *flagsArray; + jlong *cd_nelmtsArray; + jint *cd_valuesArray; + jint *filter_configArray; + jboolean isCopy; + char *filter; + jstring str; + + if (namelen <= 0) { + h5badArgument(env, "H5Pget_filter: namelen <= 0"); + } /* end if */ + else if (flags == NULL) { + h5badArgument(env, "H5Pget_filter: flags is NULL"); + } /* end else if */ + else if (cd_nelmts == NULL) { + h5badArgument(env, "H5Pget_filter: cd_nelmts is NULL"); + } /* end else if */ + else if (filter_config == NULL) { + h5badArgument(env, "H5Pget_filter: filter_config is NULL"); + } /* end else if */ + else { + filter = (char*)HDmalloc(sizeof(char)*(size_t)namelen); + if (filter == NULL) { + h5outOfMemory(env, "H5Pget_filter: namelent malloc failed"); + return -1; + } /* end if */ + flagsArray = (jint*)ENVPTR->GetIntArrayElements(ENVPAR flags, &isCopy); + if (flagsArray == NULL) { + HDfree(filter); + h5JNIFatalError(env, "H5Pget_filter: flags array not pinned"); + return -1; + } /* end if */ + + cd_nelmtsArray = (jlong*)ENVPTR->GetLongArrayElements(ENVPAR cd_nelmts, &isCopy); + if (cd_nelmtsArray == NULL) { + ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT); + HDfree(filter); + h5JNIFatalError(env, "H5Pget_filter: nelmts array not pinned"); + return -1; + } /* end if */ + filter_configArray = (jint*)ENVPTR->GetIntArrayElements(ENVPAR filter_config, &isCopy); + if (filter_configArray == NULL) { + ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, JNI_ABORT); + ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT); + HDfree(filter); + h5JNIFatalError(env, "H5Pget_filter: filter_config array not pinned"); + return -1; + } /* end if */ + + if (*cd_nelmtsArray == 0 && cd_values == NULL) { + /* direct cast (size_t *)variable fails on 32-bit environment */ + long long cd_nelmts_temp = 0; + size_t cd_nelmts_t = (size_t)cd_nelmts_temp; + + status = H5Pget_filter2((hid_t)plist, (unsigned)filter_number, + (unsigned int *)flagsArray, &cd_nelmts_t, NULL, + (size_t)namelen, filter, (unsigned int *)filter_configArray); + + *cd_nelmtsArray = (jlong)cd_nelmts_t; + } /* end if */ + else { + if (cd_values == NULL) { + h5badArgument(env, "H5Pget_filter: cd_values is NULL"); + return -1; + } /* end if */ + cd_valuesArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR cd_values, &isCopy); + if (cd_valuesArray == NULL) { + ENVPTR->ReleaseIntArrayElements(ENVPAR filter_config, filter_configArray, JNI_ABORT); + ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, JNI_ABORT); + ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT); + HDfree(filter); + h5JNIFatalError(env, "H5Pget_filter: elmts array not pinned"); + return -1; + } /* end if */ + + { /* direct cast (size_t *)variable fails on 32-bit environment */ + long long cd_nelmts_temp = *(cd_nelmtsArray); + size_t cd_nelmts_t = (size_t)cd_nelmts_temp; + + status = H5Pget_filter2((hid_t)plist, (unsigned)filter_number, + (unsigned int *)flagsArray, &cd_nelmts_t, (unsigned int *)cd_valuesArray, + (size_t)namelen, filter, (unsigned int *)filter_configArray); + + *cd_nelmtsArray = (jlong)cd_nelmts_t; + } /* end direct cast special */ + } /* end else */ + + if (status < 0) { + if (cd_values) + ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesArray, JNI_ABORT); + ENVPTR->ReleaseIntArrayElements(ENVPAR filter_config, filter_configArray, JNI_ABORT); + ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, JNI_ABORT); + ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT); + HDfree(filter); + h5libraryError(env); + } /* end if */ + else { + if (cd_values) + ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesArray, 0); + ENVPTR->ReleaseIntArrayElements(ENVPAR filter_config, filter_configArray, 0); + ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, 0); + ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, 0); + /* NewStringUTF may throw OutOfMemoryError */ + str = ENVPTR->NewStringUTF(ENVPAR filter); + HDfree(filter); + if (str == NULL) + h5JNIFatalError(env, "H5Pget_filter: return string not pinned"); + else + ENVPTR->SetObjectArrayElement(ENVPAR name, 0, (jobject)str); + } /* end else */ + } /* end else */ + + return (jint)status; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1filter2 */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_filter_by_id2 + * Signature: (JI[I[J[IJ[Ljava/lang/String;[I)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2(JNIEnv *env, jclass clss, jlong plist, jint filter, + jintArray flags, jlongArray cd_nelmts, jintArray cd_values, jlong namelen, jobjectArray name, jintArray filter_config) +{ + herr_t status = -1; + int i = 0; + jint *cd_valuesArray; + jint *flagsArray; + jint *filter_configArray; + jlong *cd_nelmtsArray; + jboolean isCopy; + long bs; + char *aName; + jstring str; + + bs = (long)namelen; + if (bs <= 0) { + h5badArgument(env, "H5Pget_filter_by_id: namelen <= 0"); + } /* end if */ + else if (flags == NULL) { + h5nullArgument(env, "H5Pget_filter_by_id: flags is NULL"); + } /* end else if */ + else if (cd_nelmts == NULL) { + h5nullArgument(env, "H5Pget_filter_by_id: cd_nelms is NULL"); + } /* end else if */ + else if (cd_values == NULL) { + h5nullArgument(env, "H5Pget_filter_by_id: cd_values is NULL"); + } /* end else if */ + else if (name == NULL) { + h5nullArgument(env, "H5Pget_filter_by_id: name is NULL"); + } /* end else if */ + else if (filter_config == NULL) { + h5badArgument(env, "H5Pget_filter_by_id: filter_config is NULL"); + } /* end else if */ + else { + aName = (char*)HDmalloc(sizeof(char) * (size_t)bs); + if (aName == NULL) { + h5outOfMemory(env, "H5Pget_filter_by_id: malloc failed"); + return -1; + } /* end if */ + flagsArray = ENVPTR->GetIntArrayElements(ENVPAR flags,&isCopy); + if (flagsArray == NULL) { + HDfree(aName); + h5JNIFatalError(env, "H5Pget_filter_by_id: flags not pinned"); + return -1; + } /* end if */ + cd_nelmtsArray = ENVPTR->GetLongArrayElements(ENVPAR cd_nelmts, &isCopy); + if (cd_nelmtsArray == NULL) { + ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT); + HDfree(aName); + h5JNIFatalError(env, "H5Pget_filter_by_id: cd_nelms not pinned"); + return -1; + } /* end if */ + cd_valuesArray = ENVPTR->GetIntArrayElements(ENVPAR cd_values, &isCopy); + if (cd_valuesArray == NULL) { + ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT); + ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, JNI_ABORT); + HDfree(aName); + h5JNIFatalError(env, "H5Pget_filter_by_id: cd_values array not converted to unsigned int."); + return -1; + } /* end if */ + filter_configArray = ENVPTR->GetIntArrayElements(ENVPAR filter_config, &isCopy); + if (filter_configArray == NULL) { + ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT); + ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, JNI_ABORT); + ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesArray, JNI_ABORT); + HDfree(aName); + h5JNIFatalError(env, "H5Pget_filter_by_id: flags not pinned"); + return -1; + } /* end if */ + + { /* direct cast (size_t *)variable fails on 32-bit environment */ + long long cd_nelmts_temp = *(cd_nelmtsArray); + size_t cd_nelmts_t = (size_t)cd_nelmts_temp; + + status = H5Pget_filter_by_id2((hid_t)plist, (H5Z_filter_t)filter, + (unsigned int *)flagsArray, &cd_nelmts_t, (unsigned int *)cd_valuesArray, + (size_t)namelen, (char *)aName, (unsigned int *)filter_configArray); + + *cd_nelmtsArray = (jlong)cd_nelmts_t; + } /* end direct cast special handling */ + + if (status < 0) { + ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, JNI_ABORT); + ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, JNI_ABORT); + ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesArray, JNI_ABORT); + ENVPTR->ReleaseIntArrayElements(ENVPAR filter_config, filter_configArray, JNI_ABORT); + HDfree(aName); + h5libraryError(env); + } /* end if */ + else { + str = ENVPTR->NewStringUTF(ENVPAR aName); + HDfree(aName); + ENVPTR->ReleaseIntArrayElements(ENVPAR flags, flagsArray, 0); + ENVPTR->ReleaseLongArrayElements(ENVPAR cd_nelmts, cd_nelmtsArray, 0); + ENVPTR->ReleaseIntArrayElements(ENVPAR cd_values, cd_valuesArray, 0); + ENVPTR->ReleaseIntArrayElements(ENVPAR filter_config, filter_configArray, 0); + } /* end else */ + } /* end else */ + + return (jint)status; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2 */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_nlinks + * Signature: (J)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1nlinks(JNIEnv *env, jclass clss, jlong lapl_id) +{ + size_t nlinks; + if (H5Pget_nlinks((hid_t)lapl_id, &nlinks) < 0) + h5libraryError(env); + + return (jlong) nlinks; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1nlinks */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_nlinks + * Signature: (JJ)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1nlinks(JNIEnv *env, jclass clss, jlong lapl_id, jlong nlinks) +{ + herr_t retVal = -1; + + if (nlinks <= 0) { + h5badArgument(env, "H5Pset_1nlinks: nlinks_l <= 0"); + } /* end if */ + else { + retVal = H5Pset_nlinks((hid_t)lapl_id, (size_t)nlinks); + if(retVal < 0) + h5libraryError(env); + } /* end else */ + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1nlinks */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_libver_bounds + * Signature: (J[I)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1libver_1bounds(JNIEnv *env, jclass clss, jlong fapl_id, jintArray libver) +{ + herr_t retVal = -1; + H5F_libver_t *theArray = NULL; + jboolean isCopy; + + if (libver == NULL) { + h5nullArgument(env, "H5Pget_libver_bounds: libversion bounds is NULL"); + } /* end if */ + else { + theArray = (H5F_libver_t*)ENVPTR->GetIntArrayElements(ENVPAR libver, &isCopy); + if (theArray == NULL) { + h5JNIFatalError(env, "H5Pget_libver_bounds: input not pinned"); + } /* end if */ + else { + retVal = H5Pget_libver_bounds((hid_t)fapl_id, &(theArray[0]), &(theArray[1])); + if(retVal < 0) { + ENVPTR->ReleaseIntArrayElements(ENVPAR libver, (jint*)theArray, JNI_ABORT); + h5libraryError(env); + } /* end if */ + else + ENVPTR->ReleaseIntArrayElements(ENVPAR libver, (jint*)theArray, 0); + } /* end else */ + } /* end else */ + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1libver_1bounds */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_libver_bounds + * Signature: (JII)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1libver_1bounds(JNIEnv *env, jclass clss, jlong fapl_id, jint low, jint high) +{ + herr_t retVal = -1; + + if ((H5F_libver_t)high != H5F_LIBVER_LATEST) { + h5badArgument(env, "H5Pset_libver_bounds: invalid high library version bound"); + } /* end if */ + else if(((H5F_libver_t)low !=H5F_LIBVER_EARLIEST) && ((H5F_libver_t)low != H5F_LIBVER_LATEST)) { + h5badArgument(env, "H5Pset_libver_bounds: invalid low library version bound"); + } /* end else if */ + else { + retVal = H5Pset_libver_bounds((hid_t)fapl_id, (H5F_libver_t)low, (H5F_libver_t)high); + if(retVal < 0) + h5libraryError(env); + } /* end else */ + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1libver_1bounds */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_link_creation_order + * Signature: (J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1link_1creation_1order(JNIEnv *env, jclass clss, jlong gcpl_id) +{ + unsigned crt_order_flags; + + if(H5Pget_link_creation_order((hid_t)gcpl_id, &crt_order_flags) < 0) + h5libraryError(env); + + return (jint)crt_order_flags; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1link_1creation_1order */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_link_creation_order + * Signature: (JI)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1link_1creation_1order(JNIEnv *env, jclass clss, jlong gcpl_id, jint crt_order_flags) +{ + herr_t retVal = -1; + + retVal = H5Pset_link_creation_order((hid_t)gcpl_id, (unsigned)crt_order_flags); + if(retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1link_1creation_1order */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_attr_creation_order + * Signature: (J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1attr_1creation_1order(JNIEnv *env, jclass clss, jlong ocpl_id) +{ + unsigned crt_order_flags; + + if(H5Pget_attr_creation_order((hid_t)ocpl_id, &crt_order_flags) < 0) + h5libraryError(env); + + return (jint)crt_order_flags; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1attr_1creation_1order */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_attr_creation_order + * Signature: (JI)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1attr_1creation_1order(JNIEnv *env, jclass clss, jlong ocpl_id, jint crt_order_flags) +{ + herr_t retVal = -1; + + retVal = H5Pset_attr_creation_order((hid_t)ocpl_id, (unsigned)crt_order_flags); + if(retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1attr_1creation_1order */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_copy_object + * Signature: (JI)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1copy_1object(JNIEnv *env, jclass clss, jlong ocp_plist_id, jint copy_options) +{ + herr_t retVal = -1; + + retVal = H5Pset_copy_object((hid_t)ocp_plist_id, (unsigned)copy_options); + if(retVal < 0) + h5libraryError(env); +} /* end Java_hdf_hdf5lib_H5_H5Pset_1copy_1object */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_copy_object + * Signature: (J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1copy_1object(JNIEnv *env, jclass clss, jlong ocp_plist_id) +{ + unsigned copy_options; + + if(H5Pget_copy_object((hid_t)ocp_plist_id, ©_options) < 0) + h5libraryError(env); + + return (jint)copy_options; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1copy_1object */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_create_intermediate_group + * Signature: (JZ)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1create_1intermediate_1group(JNIEnv *env, jclass clss, jlong lcpl_id, jboolean crt_intermed_group) +{ + herr_t retVal = -1; + + retVal = H5Pset_create_intermediate_group((hid_t)lcpl_id, (unsigned)crt_intermed_group); + if(retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1create_1intermediate_1group */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_create_intermediate_group + * Signature: (J)Z + */ +JNIEXPORT jboolean JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1create_1intermediate_1group(JNIEnv *env, jclass clss, jlong lcpl_id) +{ + unsigned crt_intermed_group; + + if(H5Pget_create_intermediate_group((hid_t)lcpl_id, &crt_intermed_group) < 0) + h5libraryError(env); + + return (jboolean)crt_intermed_group; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1create_1intermediate_1group */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_data_transform + * Signature: (JLjava/lang/String;)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1data_1transform(JNIEnv *env, jclass clss, jlong plist_id, jstring expression) +{ + herr_t retVal = -1; + const char *express; + + PIN_JAVA_STRING(expression, express, -1); + + retVal = H5Pset_data_transform((hid_t)plist_id, express); + + UNPIN_JAVA_STRING(expression, express); + + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1data_1transform */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_data_transform + * Signature: (J[Ljava/lang/String;J)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1data_1transform(JNIEnv *env, jclass clss, jlong plist_id, jobjectArray expression, jlong size) +{ + size_t buf_size; + char *express; + jlong express_size = -1; + jstring str = NULL; + + if (size <= 0) { + h5badArgument(env, "H5Pget_data_transform: size <= 0"); + } /* end if */ + else { + express_size = (jlong)H5Pget_data_transform((hid_t)plist_id, (char*)NULL, (size_t)size); + if(express_size < 0) { + h5libraryError(env); + } /* end if */ + else { + buf_size = (size_t)express_size + 1;/* add extra space for the null terminator */ + express = (char*)HDmalloc(sizeof(char) * buf_size); + if (express == NULL) { + h5outOfMemory(env, "H5Pget_data_transform: malloc failed "); + } /* end if */ + else { + express_size = (jlong)H5Pget_data_transform((hid_t)plist_id, express, (size_t)size); + if (express_size < 0) { + HDfree(express); + h5libraryError(env); + } + else { + str = ENVPTR->NewStringUTF(ENVPAR express); + HDfree(express); + if (str == NULL) + h5JNIFatalError(env, "H5Pget_data_transform: return string not created"); + else + ENVPTR->SetObjectArrayElement(ENVPAR expression, 0, str); + } /* end else */ + } /* end else */ + } /* end else */ + } /* end else */ + return express_size; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1data_1transform */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_elink_acc_flags + * Signature: (J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1elink_1acc_1flags(JNIEnv *env, jclass clss, jlong lapl_id) +{ + unsigned flags; + + if(H5Pget_elink_acc_flags((hid_t)lapl_id, &flags) < 0) + h5libraryError(env); + + return (jint)flags; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1elink_1acc_1flags */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_elink_acc_flags + * Signature: (JI)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1elink_1acc_1flags(JNIEnv *env, jclass clss, jlong lapl_id, jint flags) +{ + herr_t retVal = -1; + + if (((unsigned) flags != H5F_ACC_RDWR) && + ((unsigned) flags != H5F_ACC_RDONLY) && + ((unsigned) flags != H5F_ACC_DEFAULT)) { + h5badArgument(env, "H5Pset_elink_acc_flags: invalid flags value"); + } /* end if */ + else { + retVal = H5Pset_elink_acc_flags((hid_t)lapl_id, (unsigned)flags); + if (retVal < 0) + h5libraryError(env); + } /* end else */ + return (jint) retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1elink_1acc_1flags */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_link_phase_change + * Signature: (JII)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1link_1phase_1change(JNIEnv *env, jclass clss, jlong gcpl_id, jint max_compact, jint min_dense) +{ + herr_t retVal = -1; + + if(max_compact < min_dense) { + h5badArgument(env, "H5Pset_link_phase_change: max compact value must be >= min dense value"); + } /* end if */ + else if(max_compact > 65535) { + h5badArgument(env, "H5Pset_link_phase_change: max compact value must be < 65536"); + } /* end else if */ + else if(min_dense > 65535) { + h5badArgument(env, "H5Pset_link_phase_change: min dense value must be < 65536"); + } /* end else if */ + else { + retVal = H5Pset_link_phase_change((hid_t)gcpl_id, (unsigned)max_compact, (unsigned)min_dense); + if(retVal < 0) + h5libraryError(env); + } /* end else */ + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1link_1phase_1change */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_link_phase_change + * Signature: (J[I)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1link_1phase_1change (JNIEnv *env, jclass clss, jlong gcpl_id, jintArray links) +{ + herr_t retVal = -1; + unsigned *theArray = NULL; + jboolean isCopy; + + if (links == NULL) { + h5nullArgument( env, "H5Pget_link_phase_change: links is NULL"); + } /* end if */ + else { + theArray = (unsigned *)ENVPTR->GetIntArrayElements(ENVPAR links, &isCopy); + if (theArray == NULL) { + h5JNIFatalError( env, "H5Pget_link_phase_change: input not pinned"); + } /* end if */ + else { + retVal = H5Pget_link_phase_change((hid_t)gcpl_id, &(theArray[0]), &(theArray[1])); + if(retVal < 0) { + ENVPTR->ReleaseIntArrayElements(ENVPAR links, (jint *)theArray, JNI_ABORT); + h5libraryError(env); + } /* end if */ + else + ENVPTR->ReleaseIntArrayElements(ENVPAR links, (jint *)theArray, 0); + } /* end else */ + } /* end else */ + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1link_1phase_1change */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_attr_phase_change + * Signature: (J[I)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1attr_1phase_1change(JNIEnv *env, jclass clss, jlong ocpl_id, jintArray attributes) +{ + herr_t retVal = -1; + unsigned *theArray = NULL; + jboolean isCopy; + + if (attributes == NULL) { + h5nullArgument(env, "H5Pget_attr_phase_change: attributes is NULL"); + } /* end if */ + else { + theArray = (unsigned *)ENVPTR->GetIntArrayElements(ENVPAR attributes, &isCopy); + if (theArray == NULL) { + h5JNIFatalError(env, "H5Pget_attr_phase_change: input not pinned"); + } /* end if */ + else { + retVal = H5Pget_attr_phase_change((hid_t)ocpl_id, &(theArray[0]), &(theArray[1])); + if(retVal < 0) { + ENVPTR->ReleaseIntArrayElements(ENVPAR attributes, (jint *)theArray, JNI_ABORT); + h5libraryError(env); + } /* end if */ + else + ENVPTR->ReleaseIntArrayElements(ENVPAR attributes, (jint *)theArray, 0); + } /* end else */ + } /* end else */ + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1attr_1phase_1change */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_attr_phase_change + * Signature: (JII)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1attr_1phase_1change(JNIEnv *env, jclass clss, jlong ocpl_id, jint max_compact, jint min_dense) +{ + herr_t retVal = -1; + + retVal = H5Pset_attr_phase_change((hid_t)ocpl_id, (unsigned)max_compact, (unsigned)min_dense); + if(retVal < 0) + h5libraryError(env); +} /* end Java_hdf_hdf5lib_H5_H5Pset_1attr_1phase_1change */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_shared_mesg_phase_change + * Signature: (J[I)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1phase_1change(JNIEnv *env, jclass clss, jlong fcpl_id, jintArray size) +{ + herr_t retVal = -1; + unsigned *theArray = NULL; + jboolean isCopy; + + if (size == NULL) { + h5nullArgument(env, "H5Pget_shared_mesg_phase_change: size is NULL"); + } /* end if */ + else { + theArray = (unsigned *)ENVPTR->GetIntArrayElements(ENVPAR size, &isCopy); + if (theArray == NULL) { + h5JNIFatalError(env, "H5Pget_shared_mesg_phase_change: input not pinned"); + } /* end if */ + else { + retVal = H5Pget_shared_mesg_phase_change((hid_t)fcpl_id, &(theArray[0]), &(theArray[1])); + if(retVal < 0) { + ENVPTR->ReleaseIntArrayElements(ENVPAR size, (jint *)theArray, JNI_ABORT); + h5libraryError(env); + } /* end if */ + else + ENVPTR->ReleaseIntArrayElements(ENVPAR size, (jint *)theArray, 0); + } /* end else */ + } /* end else */ + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1phase_1change */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_shared_mesg_phase_change + * Signature: (JII)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1phase_1change(JNIEnv *env, jclass clss, jlong fcpl_id, jint max_list, jint min_btree) +{ + herr_t retVal = -1; + + /* Check that values are sensible. The min_btree value must be no greater + * than the max list plus one. + * + * Range check to make certain they will fit into encoded form. + */ + + if(max_list + 1 < min_btree) { + h5badArgument(env, "H5Pset_shared_mesg_phase_change: minimum B-tree value is greater than maximum list value"); + } /* end if */ + else if(max_list > H5O_SHMESG_MAX_LIST_SIZE) { + h5badArgument(env, "H5Pset_shared_mesg_phase_change: max list value is larger than H5O_SHMESG_MAX_LIST_SIZE"); + } /* end else if */ + else if(min_btree > H5O_SHMESG_MAX_LIST_SIZE) { + h5badArgument(env, "H5Pset_shared_mesg_phase_change: min btree value is larger than H5O_SHMESG_MAX_LIST_SIZE"); + } /* end else if */ + else { + retVal = H5Pset_shared_mesg_phase_change((hid_t)fcpl_id, (unsigned)max_list, (unsigned)min_btree); + if(retVal < 0) + h5libraryError(env); + } /* end else */ + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1phase_1change */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_shared_mesg_nindexes + * Signature: (J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1nindexes(JNIEnv *env, jclass clss, jlong fcpl_id) +{ + unsigned nindexes; + + if(H5Pget_shared_mesg_nindexes((hid_t)fcpl_id, &nindexes) < 0) + h5libraryError(env); + + return (jint)nindexes; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1nindexes */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_shared_mesg_nindexes + * Signature: (JI)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1nindexes(JNIEnv *env, jclass clss, jlong plist_id, jint nindexes) +{ + herr_t retVal = -1; + + if (nindexes > H5O_SHMESG_MAX_NINDEXES) { + h5badArgument(env, "H5Pset_shared_mesg_nindexes: number of indexes is greater than H5O_SHMESG_MAX_NINDEXES"); + } /* end if */ + else { + retVal = H5Pset_shared_mesg_nindexes((hid_t)plist_id, (unsigned)nindexes); + if(retVal < 0) + h5libraryError(env); + } /* end else */ + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1nindexes */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_shared_mesg_index + * Signature: (JIII)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1index(JNIEnv *env, jclass clss, jlong fcpl_id, jint index_num, + jint mesg_type_flags, jint min_mesg_size) +{ + herr_t retVal = -1; + unsigned nindexes;/* Number of SOHM indexes */ + + /* Check arguments */ + if(mesg_type_flags > H5O_SHMESG_ALL_FLAG) { + h5badArgument(env, "H5Pset_shared_mesg_index: unrecognized flags in mesg_type_flags"); + } /* end if */ + else if(H5Pget_shared_mesg_nindexes((hid_t)fcpl_id, &nindexes) < 0) { /* Read the current number of indexes */ + h5libraryError(env); + } /* end else if */ + else { + /* Range check */ + if((unsigned)index_num >= nindexes) { + h5badArgument(env, "H5Pset_shared_mesg_index: index_num is too large; no such index"); + } /* end if */ + else { + retVal = H5Pset_shared_mesg_index((hid_t)fcpl_id, (unsigned)index_num, (unsigned) mesg_type_flags, (unsigned) min_mesg_size); + if(retVal < 0) + h5libraryError(env); + } /* end else */ + } /* end else */ + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1index */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_shared_mesg_index + * Signature: (JI[I)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1index(JNIEnv *env, jclass clss, jlong fcpl_id, jint index_num, jintArray mesg_info) +{ + herr_t retVal = -1; + unsigned nindexes;/* Number of SOHM indexes */ + unsigned *theArray = NULL; + jboolean isCopy; + + /* Read the current number of indexes */ + if(H5Pget_shared_mesg_nindexes((hid_t)fcpl_id, &nindexes)<0) { + h5libraryError(env); + } /* end if */ + else { + /* Range check */ + if((unsigned)index_num >= nindexes) { + h5badArgument(env, "H5Pget_shared_mesg_index: index_num is too large; no such index"); + } /* end if */ + else if (mesg_info == NULL) { + h5nullArgument(env, "H5Pget_shared_mesg_index: mesg_info is NULL"); + } /* end else if */ + else { + theArray = (unsigned *)ENVPTR->GetIntArrayElements(ENVPAR mesg_info, &isCopy); + if (theArray == NULL) { + h5JNIFatalError(env, "H5Pget_shared_mesg_index: input not pinned"); + } /* end if */ + else { + retVal = H5Pget_shared_mesg_index((hid_t)fcpl_id, (unsigned)index_num, &(theArray[0]), &(theArray[1])); + if(retVal < 0) { + ENVPTR->ReleaseIntArrayElements(ENVPAR mesg_info, (jint*)theArray, JNI_ABORT); + h5libraryError(env); + } /* end if */ + else + ENVPTR->ReleaseIntArrayElements(ENVPAR mesg_info, (jint*)theArray, 0); + } /* end else */ + } /* end else */ + } /* end else */ + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1index */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_local_heap_size_hint + * Signature: (JJ)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1local_1heap_1size_1hint(JNIEnv *env, jclass clss, jlong gcpl_id, jlong size_hint) +{ + herr_t retVal = -1; + + retVal = H5Pset_local_heap_size_hint((hid_t)gcpl_id, (size_t)size_hint); + if(retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1local_1heap_1size_1hint */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_local_heap_size_hint + * Signature: (J)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1local_1heap_1size_1hint(JNIEnv *env, jclass clss, jlong gcpl_id) +{ + size_t size_hint; + + if(H5Pget_local_heap_size_hint((hid_t)gcpl_id, &size_hint) < 0) + h5libraryError(env); + + return (jlong)size_hint; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1local_1heap_1size_1hint */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_nbit + * Signature: (J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1nbit(JNIEnv *env, jclass clss, jlong plist_id) +{ + herr_t retVal = -1; + + retVal = H5Pset_nbit((hid_t)plist_id); + if(retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1nbit */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_scaleoffset + * Signature: (JII)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1scaleoffset(JNIEnv *env, jclass clss, jlong plist_id, jint scale_type, jint scale_factor) +{ + herr_t retVal = -1; + + /* Check arguments */ + if(scale_factor < 0) { + h5badArgument(env, "H5Pset_scaleoffset: scale factor must be > 0"); + } /* end if */ + else { + if(scale_type != H5Z_SO_FLOAT_DSCALE && scale_type != H5Z_SO_FLOAT_ESCALE && scale_type != H5Z_SO_INT){ + h5badArgument(env, "H5Pset_scaleoffset: invalid scale type"); + } /* end if */ + else { + retVal = H5Pset_scaleoffset((hid_t)plist_id, (H5Z_SO_scale_type_t)scale_type, scale_factor); + if(retVal < 0) + h5libraryError(env); + } /* end else */ + } /* end else */ + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1scaleoffset */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_est_link_info + * Signature: (JII)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1est_1link_1info(JNIEnv *env, jclass clss, jlong gcpl_id, jint est_num_entries, jint est_name_len) +{ + herr_t retVal = -1; + + /* Range check values */ + if((est_num_entries > 65535) || (est_name_len > 65535)) { + h5badArgument(env, "H5Pset_est_link_info: est. name length or number of entries must be < 65536"); + } /* end if */ + else { + retVal = H5Pset_est_link_info((hid_t)gcpl_id, (unsigned)est_num_entries, (unsigned)est_name_len); + if(retVal < 0) + h5libraryError(env); + } /* end else */ + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1est_1link_1info */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_est_link_info + * Signature: (J[I)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1est_1link_1info(JNIEnv *env, jclass clss, jlong gcpl_id, jintArray link_info) +{ + herr_t retVal = -1; + unsigned *theArray = NULL; + jboolean isCopy; + + if (link_info == NULL) { + h5nullArgument(env, "H5Pget_est_link_info: link_info is NULL"); + } /* end if */ + else { + theArray = (unsigned *)ENVPTR->GetIntArrayElements(ENVPAR link_info,&isCopy); + if (theArray == NULL) { + h5JNIFatalError(env, "H5Pget_est_link_info: input not pinned"); + } /* end if */ + else { + retVal= H5Pget_est_link_info((hid_t)gcpl_id, &(theArray[0]), &(theArray[1])); + if(retVal < 0) { + ENVPTR->ReleaseIntArrayElements(ENVPAR link_info, (jint *)theArray, JNI_ABORT); + h5libraryError(env); + } /* end if */ + else + ENVPTR->ReleaseIntArrayElements(ENVPAR link_info, (jint *)theArray, 0); + } /* end else */ + } /* end else */ + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1est_1link_1info */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_elink_fapl + * Signature: (JJ)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1elink_1fapl(JNIEnv *env, jclass clss, jlong lapl_id, jlong fapl_id) +{ + herr_t retVal = -1; + + retVal = H5Pset_elink_fapl((hid_t)lapl_id, (hid_t)fapl_id); + if(retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1elink_1fapl */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: _H5Pget_elink_fapl + * Signature: (J)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5__1H5Pget_1elink_1fapl(JNIEnv *env, jclass clss, jlong lapl_id) +{ + hid_t retVal = -1; + + retVal = H5Pget_elink_fapl((hid_t)lapl_id); + if (retVal < 0) + h5libraryError(env); + + return (jlong)retVal; +} /* end Java_hdf_hdf5lib_H5__1H5Pget_1elink_1fapl */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_elink_prefix + * Signature: (JLjava/lang/String;)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1elink_1prefix(JNIEnv *env, jclass clss, jlong lapl_id, jstring prefix) +{ + herr_t retVal = -1; + const char *aName; + + PIN_JAVA_STRING(prefix, aName, -1); + + retVal = H5Pset_elink_prefix((hid_t)lapl_id, aName); + + UNPIN_JAVA_STRING(prefix, aName); + + if(retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1elink_1prefix */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_elink_prefix + * Signature: (J[Ljava/lang/String;)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1elink_1prefix(JNIEnv *env, jclass clss, jlong lapl_id, jobjectArray prefix) +{ + size_t size = 0; + char *pre; + jlong prefix_size; + jstring str = NULL; + + if (prefix == NULL) { + h5nullArgument(env, "H5Pget_elink_prefix: prefix is NULL"); + } /* end if */ + else { + prefix_size = (jlong)H5Pget_elink_prefix((hid_t)lapl_id, (char*)NULL, size); + if(prefix_size < 0) { + h5libraryError(env); + } /* end if */ + else { + size = (size_t)prefix_size + 1;/* add extra space for the null terminator */ + pre = (char*)HDmalloc(sizeof(char)*size); + if (pre == NULL) { + h5outOfMemory(env, "H5Pget_elink_prefix: malloc failed "); + } /* end if */ + else { + prefix_size = (jlong)H5Pget_elink_prefix((hid_t)lapl_id, (char*)pre, size); + + if (prefix_size < 0) { + HDfree(pre); + h5libraryError(env); + } /* end if */ + else { + str = ENVPTR->NewStringUTF(ENVPAR pre); + HDfree(pre); + if (str == NULL) { + h5JNIFatalError(env, "H5Pget_elink_prefix: return string not created"); + } /* end if */ + else + ENVPTR->SetObjectArrayElement(ENVPAR prefix, 0, str); + } /* end else */ + } /* end else */ + } /* end else */ + } /* end else */ + + return prefix_size; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1elink_1prefix */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_fapl_direct + * Signature: (JJJJ)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1fapl_1direct(JNIEnv *env, jclass clss, jlong fapl_id, jlong alignment, + jlong block_size, jlong cbuf_size) +{ + herr_t retVal = -1; + +#ifdef H5_HAVE_DIRECT + retVal = H5Pset_fapl_direct((hid_t)fapl_id, (size_t)alignment, (size_t)block_size, (size_t)cbuf_size); +#endif + if(retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1direct */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_fapl_direct + * Signature: (J[J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1fapl_1direct(JNIEnv *env, jclass clss, jlong fapl_id, jlongArray info) +{ + herr_t retVal = -1; + +#ifdef H5_HAVE_DIRECT + size_t alignment = 0; + size_t block_size = 0; + size_t cbuf_size = 0; + jlong *theArray; + jboolean isCopy; + if (info == NULL) { + h5nullArgument(env, "H5Pget_fapl_direct: info input array is NULL"); + } /* end if */ + else { + if (ENVPTR->GetArrayLength(ENVPAR info) < 3) { + h5badArgument( env, "H5Pget_fapl_direct: info input array < 4"); + } /* end if */ + else { + theArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR info, &isCopy); + if (theArray == NULL) { + h5JNIFatalError(env, "H5Pget_fapl_direct: info not pinned"); + } /* end if */ + else { + retVal = H5Pget_fapl_direct((hid_t)fapl_id, &alignment, &block_size, &cbuf_size); + if(retVal < 0) { + ENVPTR->ReleaseLongArrayElements(ENVPAR info, theArray, JNI_ABORT); + h5libraryError(env); + } /* end if */ + else { + theArray[0] = (jlong)alignment; + theArray[1] = (jlong)block_size; + theArray[2] = (jlong)cbuf_size; + ENVPTR->ReleaseLongArrayElements(ENVPAR info, theArray, 0); + } /* end else */ + } /* end else */ + } /* end else */ + } /* end else */ +#else + if (retVal < 0) + h5libraryError(env); +#endif + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1fapl_1direct */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_fapl_sec2 + * Signature: (J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1fapl_1sec2(JNIEnv *env, jclass clss, jlong fapl_id) +{ + herr_t retVal = -1; + + retVal = H5Pset_fapl_sec2((hid_t) fapl_id); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1sec2 */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_fapl_stdio + * Signature: (J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1fapl_1stdio(JNIEnv *env, jclass clss, jlong fapl_id) +{ + herr_t retVal = -1; + + retVal = H5Pset_fapl_stdio((hid_t) fapl_id); + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1stdio */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_fapl_windows + * Signature: (J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1fapl_1windows(JNIEnv *env, jclass clss, jlong fapl_id) +{ + herr_t retVal = -1; + +#ifdef H5_HAVE_WINDOWS + retVal = H5Pset_fapl_windows((hid_t) fapl_id); +#endif + if (retVal < 0) + h5libraryError(env); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1windows */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_fapl_muti + * Signature: (J[I[J[Ljava/lang/String;[J)Z + */ +JNIEXPORT jboolean JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1fapl_1multi(JNIEnv *env, jclass clss, jlong tid, jintArray memb_map, + jlongArray memb_fapl, jobjectArray memb_name, jlongArray memb_addr) +{ + herr_t status = -1; + int i; + jint *themapArray = NULL; + jlong *thefaplArray = NULL; + jlong *theaddrArray = NULL; + char **mName = NULL; + jstring str; + jboolean isCopy; + int relax = 0; + + if (memb_map) { + themapArray = (jint*)ENVPTR->GetIntArrayElements(ENVPAR memb_map, &isCopy); + if (themapArray == NULL) { + h5JNIFatalError(env, "H5Pget_fapl_muti: memb_map not pinned"); + return 0; + } /* end if */ + } /* end if */ + + if (memb_fapl) { + thefaplArray = (jlong*)ENVPTR->GetLongArrayElements(ENVPAR memb_fapl, &isCopy); + if (thefaplArray == NULL) { + if (memb_map) ENVPTR->ReleaseIntArrayElements(ENVPAR memb_map, themapArray, JNI_ABORT); + h5JNIFatalError(env, "H5Pget_fapl_muti: memb_fapl not pinned"); + return 0; + } /* end if */ + } /* end if */ + + if (memb_addr) { + theaddrArray = (jlong*)ENVPTR->GetLongArrayElements(ENVPAR memb_addr, &isCopy); + if (theaddrArray == NULL) { + if (memb_map) ENVPTR->ReleaseIntArrayElements(ENVPAR memb_map, themapArray, JNI_ABORT); + if (memb_fapl) ENVPTR->ReleaseLongArrayElements(ENVPAR memb_fapl, thefaplArray, JNI_ABORT); + h5JNIFatalError(env, "H5Pget_fapl_muti: memb_addr not pinned"); + return 0; + } /* end if */ + } /* end if */ + + if (memb_name) + mName = (char**)HDcalloc(H5FD_MEM_NTYPES, sizeof (*mName)); + + status = H5Pget_fapl_multi((hid_t)tid, (H5FD_mem_t*)themapArray, (hid_t*)thefaplArray, mName, (haddr_t*)theaddrArray, (hbool_t*)&relax); + + if (status < 0) { + if (memb_map) ENVPTR->ReleaseIntArrayElements(ENVPAR memb_map, themapArray, JNI_ABORT); + if (memb_fapl) ENVPTR->ReleaseLongArrayElements(ENVPAR memb_fapl, thefaplArray, JNI_ABORT); + if (memb_addr) ENVPTR->ReleaseLongArrayElements(ENVPAR memb_addr, theaddrArray, JNI_ABORT); + if (memb_name) h5str_array_free(mName, H5FD_MEM_NTYPES); + h5libraryError(env); + } /* end if */ + else { + if (memb_map) ENVPTR->ReleaseIntArrayElements(ENVPAR memb_map, themapArray, 0); + if (memb_fapl) ENVPTR->ReleaseLongArrayElements(ENVPAR memb_fapl, thefaplArray, 0); + if (memb_addr) ENVPTR->ReleaseLongArrayElements(ENVPAR memb_addr, theaddrArray, 0); + + if (memb_name) { + if (mName) { + for (i = 0; i < H5FD_MEM_NTYPES; i++) { + if (*(mName + i)) { + str = ENVPTR->NewStringUTF(ENVPAR *(mName+i)); + ENVPTR->SetObjectArrayElement(ENVPAR memb_name, i, (jobject)str); + } /* end if */ + } /* for (i=0; i<n; i++)*/ + } /* end if */ + h5str_array_free(mName, H5FD_MEM_NTYPES); + } /* end if */ + } /* end else */ + + return (relax!=0); +} /* end Java_hdf_hdf5lib_H5_H5Pget_1fapl_1multi */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_fapl_muti + * Signature: (J[I[J[Ljava/lang/String;[JZ)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi(JNIEnv *env, jclass clss, jlong tid, jintArray memb_map, + jlongArray memb_fapl, jobjectArray memb_name, jlongArray memb_addr, jboolean relax) +{ + herr_t status = -1; + jint *themapArray = NULL; + jlong *thefaplArray = NULL; + jlong *theaddrArray = NULL; + jboolean isCopy; + jclass Sjc; + jstring rstring; + jobject o; + jboolean bb; + const char **mName = NULL; + char *member_name[H5FD_MEM_NTYPES]; + + if (memb_map) { + themapArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR memb_map, &isCopy); + if (themapArray == NULL) { + h5JNIFatalError(env, "H5Pget_fapl_muti: memb_map not pinned"); + return; + } /* end if */ + } /* end if */ + + if (memb_fapl) { + thefaplArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR memb_fapl, &isCopy); + if (thefaplArray == NULL) { + if (memb_map) + ENVPTR->ReleaseIntArrayElements(ENVPAR memb_map, themapArray, JNI_ABORT); + h5JNIFatalError(env, "H5Pget_fapl_muti: memb_fapl not pinned"); + return; + } /* end if */ + } /* end if */ + + if (memb_addr) { + theaddrArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR memb_addr, &isCopy); + if (theaddrArray == NULL) { + if (memb_map) + ENVPTR->ReleaseIntArrayElements(ENVPAR memb_map, themapArray, JNI_ABORT); + if (memb_fapl) + ENVPTR->ReleaseLongArrayElements(ENVPAR memb_fapl, thefaplArray, JNI_ABORT); + h5JNIFatalError(env, "H5Pget_fapl_muti: memb_addr not pinned"); + return; + } /* end if */ + } /* end if */ + + HDmemset(member_name, 0, H5FD_MEM_NTYPES * sizeof(char*)); + if (memb_name) { + int i; + for (i = 0; i < H5FD_MEM_NTYPES; i++) { + jstring obj = (jstring) ENVPTR->GetObjectArrayElement(ENVPAR (jobjectArray) memb_name, i); + if (obj != 0) { + jsize length = ENVPTR->GetStringUTFLength(ENVPAR obj); + const char *utf8 = ENVPTR->GetStringUTFChars(ENVPAR obj, 0); + + if (utf8) { + member_name[i] = (char*)HDmalloc(strlen(utf8) + 1); + if (member_name[i]) { + strcpy(member_name[i], utf8); + } /* end if */ + } /* end if */ + + ENVPTR->ReleaseStringUTFChars(ENVPAR obj, utf8); + ENVPTR->DeleteLocalRef(ENVPAR obj); + } /* end if */ + } /* end for */ + mName = (const char **)member_name; + } /* end if */ + + status = H5Pset_fapl_multi((hid_t)tid, (const H5FD_mem_t *)themapArray, (const hid_t *)thefaplArray, mName, (const haddr_t *)theaddrArray, (hbool_t)relax); + + if (status < 0) { + if (memb_map) ENVPTR->ReleaseIntArrayElements(ENVPAR memb_map, themapArray, JNI_ABORT); + if (memb_fapl) ENVPTR->ReleaseLongArrayElements(ENVPAR memb_fapl, thefaplArray, JNI_ABORT); + if (memb_addr) ENVPTR->ReleaseLongArrayElements(ENVPAR memb_addr, theaddrArray, JNI_ABORT); + if (memb_name) { + int i; + for (i = 0; i < H5FD_MEM_NTYPES; i++) + HDfree(member_name[i]); + } /* end if */ + h5libraryError(env); + } /* end if */ + else { + if (memb_map) ENVPTR->ReleaseIntArrayElements(ENVPAR memb_map, themapArray, 0); + if (memb_fapl) ENVPTR->ReleaseLongArrayElements(ENVPAR memb_fapl, thefaplArray, 0); + if (memb_addr) ENVPTR->ReleaseLongArrayElements(ENVPAR memb_addr, theaddrArray, 0); + if (memb_name) { + if (mName != NULL) { + int i; + Sjc = ENVPTR->FindClass(ENVPAR "java/lang/String"); + if (Sjc != NULL) { + for (i = 0; i < H5FD_MEM_NTYPES; i++) { + rstring = ENVPTR->NewStringUTF(ENVPAR member_name[i]); + o = ENVPTR->GetObjectArrayElement(ENVPAR memb_name, i); + if (o != NULL) { + bb = ENVPTR->IsInstanceOf(ENVPAR o, Sjc); + if (bb == JNI_TRUE) { + ENVPTR->SetObjectArrayElement(ENVPAR memb_name, i, (jobject)rstring); + } /* end if */ + ENVPTR->DeleteLocalRef(ENVPAR o); + } /* end if */ + HDfree(member_name[i]); + } /* end for */ + } /* end if */ + } /* end if */ + } /* end if */ + } /* end else */ +} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_fapl_split + * Signature: (JLjava/lang/String;JLjava/lang/String;J)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1fapl_1split(JNIEnv *env, jclass clss, jlong fapl_id, jstring metaext, jlong meta_pl_id, jstring rawext, jlong raw_pl_id) +{ + herr_t retVal = -1; + const char *mstr; + const char *rstr; + + PIN_JAVA_STRING_TWO0(metaext, mstr, rawext, rstr); + + retVal = H5Pset_fapl_split((hid_t)fapl_id, mstr, (hid_t)meta_pl_id, rstr, (hid_t)raw_pl_id); + + UNPIN_JAVA_STRING_TWO(metaext, mstr, rawext, rstr); + + if (retVal < 0) + h5libraryError(env); +} /* end Java_hdf_hdf5lib_H5_H5Pset_1fapl_1split */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_meta_block_size + * Signature: (JJ)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1meta_1block_1size(JNIEnv *env, jclass clss, jlong plist, jlong size) +{ + long sz = (long)size; + + if (H5Pset_meta_block_size((hid_t)plist, (hsize_t)sz) < 0) + h5libraryError(env); +} /* end Java_hdf_hdf5lib_H5_H5Pset_1meta_1block_1size */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_meta_block_size + * Signature: (J)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1meta_1block_1size(JNIEnv *env, jclass clss, jlong plist) +{ + hsize_t s; + + if (H5Pget_meta_block_size((hid_t)plist, &s) < 0) + h5libraryError(env); + + return (jlong)s; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1meta_1block_1size */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_sieve_buf_size + * Signature: (JJ)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1sieve_1buf_1size(JNIEnv *env, jclass clss, jlong plist, jlong size) +{ + size_t sz = (size_t)size; + + if (H5Pset_sieve_buf_size((hid_t)plist, (size_t)sz) < 0) + h5libraryError(env); +} /* end Java_hdf_hdf5lib_H5_H5Pset_1sieve_1buf_1size */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_sieve_buf_size + * Signature: (J)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1sieve_1buf_1size(JNIEnv *env, jclass clss, jlong plist) +{ + size_t s; + + if ( H5Pget_sieve_buf_size((hid_t)plist, &s) < 0) + h5libraryError(env); + + return (jlong)s; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1sieve_1buf_1size */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_elink_file_cache_size + * Signature: (JI)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1elink_1file_1cache_1size(JNIEnv *env, jclass clss, jlong plist, jint size) +{ + unsigned sz = (unsigned)size; + + if (H5Pset_elink_file_cache_size((hid_t)plist, (unsigned)sz) < 0) + h5libraryError(env); +} /* end Java_hdf_hdf5lib_H5_H5Pset_1elink_1file_1cache_1size */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_elink_file_cache_size + * Signature: (J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1elink_1file_1cache_1size(JNIEnv *env, jclass clss, jlong plist) +{ + unsigned s; + + if (H5Pget_elink_file_cache_size((hid_t)plist, &s) < 0) + h5libraryError(env); + + return (jint)s; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1elink_1file_1cache_1size */ + + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_mdc_config + * Signature: (J)Lhdf/hdf5lib/structs/H5AC_cache_config_t; + */ +JNIEXPORT jobject JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1mdc_1config(JNIEnv *env, jclass clss, jlong plist) +{ + H5AC_cache_config_t cacheinfo; + herr_t status = -1; + jvalue args[30]; + jstring j_str = NULL; + jobject ret_obj = NULL; + + HDmemset(&cacheinfo, 0, sizeof(H5AC_cache_config_t)); + cacheinfo.version = H5AC__CURR_CACHE_CONFIG_VERSION; + + status = H5Pget_mdc_config((hid_t)plist, &cacheinfo); + + if (status < 0) { + h5libraryError(env); + } /* end if */ + else { + args[0].i = cacheinfo.version; + args[1].z = cacheinfo.rpt_fcn_enabled; + args[2].z = cacheinfo.open_trace_file; + args[3].z = cacheinfo.close_trace_file; + if (cacheinfo.trace_file_name != NULL) { + j_str = ENVPTR->NewStringUTF(ENVPAR cacheinfo.trace_file_name); + } /* end if */ + args[4].l = j_str; + args[5].z = cacheinfo.evictions_enabled; + args[6].z = cacheinfo.set_initial_size; + args[7].j = (jlong)cacheinfo.initial_size; + args[8].d = cacheinfo.min_clean_fraction; + args[9].j = (jlong)cacheinfo.max_size; + args[10].j = (jlong)cacheinfo.min_size; + args[11].j = cacheinfo.epoch_length; + args[12].i = cacheinfo.incr_mode; + args[13].d = cacheinfo.lower_hr_threshold; + args[14].d = cacheinfo.increment; + args[15].z = cacheinfo.apply_max_increment; + args[16].j = (jlong)cacheinfo.max_increment; + args[17].i = cacheinfo.flash_incr_mode; + args[18].d = cacheinfo.flash_multiple; + args[19].d = cacheinfo.flash_threshold; + args[20].i = cacheinfo.decr_mode; + args[21].d = cacheinfo.upper_hr_threshold; + args[22].d = cacheinfo.decrement; + args[23].z = cacheinfo.apply_max_decrement; + args[24].j = (jlong)cacheinfo.max_decrement; + args[25].i = cacheinfo.epochs_before_eviction; + args[26].z = cacheinfo.apply_empty_reserve; + args[27].d = cacheinfo.empty_reserve; + args[28].j = (jlong)cacheinfo.dirty_bytes_threshold; + args[29].i = cacheinfo.metadata_write_strategy; + CALL_CONSTRUCTOR("hdf/hdf5lib/structs/H5AC_cache_config_t", "(IZZZLjava/lang/String;ZZJDJJJIDDZJIDDIDDZJIZDJI)V", args); + } /* end else */ + return ret_obj; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1mdc_1config */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_mdc_config + * Signature: (JLhdf/hdf5lib/structs/H5AC_cache_config_t;)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1mdc_1config(JNIEnv *env, jclass clss, jlong plist, jobject cache_config) +{ + herr_t status = -1; + jclass cls; + jfieldID fid; + jstring j_str; + const char *str; + H5AC_cache_config_t cacheinfo; + + cls = ENVPTR->GetObjectClass(ENVPAR cache_config); + fid = ENVPTR->GetFieldID(ENVPAR cls, "version", "I"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: version"); + return; + } /* end if */ + cacheinfo.version = ENVPTR->GetIntField(ENVPAR cache_config, fid); + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading version failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "rpt_fcn_enabled", "Z"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: rpt_fcn_enabled"); + return; + } /* end if */ + cacheinfo.rpt_fcn_enabled = ENVPTR->GetBooleanField(ENVPAR cache_config, fid); + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading rpt_fcn_enabled failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "open_trace_file", "Z"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: open_trace_file"); + return; + } /* end if */ + cacheinfo.open_trace_file = ENVPTR->GetBooleanField(ENVPAR cache_config, fid); + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading open_trace_file failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "close_trace_file", "Z"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: close_trace_file"); + return; + } /* end if */ + cacheinfo.close_trace_file = ENVPTR->GetBooleanField(ENVPAR cache_config, fid); + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading close_trace_file failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "trace_file_name", "Ljava/lang/String;"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: trace_file_name"); + return; + } /* end if */ + j_str = (jstring)ENVPTR->GetObjectField(ENVPAR cache_config, fid); + str = ENVPTR->GetStringUTFChars(ENVPAR j_str, NULL); + if (str == NULL) { + h5JNIFatalError(env, "H5Pset_mdc_config: out of memory trace_file_name"); + return; + } /* end if */ + strncpy(cacheinfo.trace_file_name, str, 1025); + ENVPTR->ReleaseStringUTFChars(ENVPAR j_str, str); + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading trace_file_name failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "evictions_enabled", "Z"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: evictions_enabled"); + return; + } /* end if */ + cacheinfo.evictions_enabled = ENVPTR->GetBooleanField(ENVPAR cache_config, fid); + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading evictions_enabled failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "set_initial_size", "Z"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: set_initial_size"); + return; + } /* end if */ + cacheinfo.set_initial_size = ENVPTR->GetBooleanField(ENVPAR cache_config, fid); + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading set_initial_size failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "initial_size", "J"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: initial_size"); + return; + } /* end if */ + cacheinfo.initial_size = (size_t)ENVPTR->GetLongField(ENVPAR cache_config, fid); + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading initial_size failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "min_clean_fraction", "D"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: min_clean_fraction"); + return; + } /* end if */ + cacheinfo.min_clean_fraction = ENVPTR->GetDoubleField(ENVPAR cache_config, fid); + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading min_clean_fraction failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "max_size", "J"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: max_size"); + return; + } /* end if */ + cacheinfo.max_size = (size_t)ENVPTR->GetLongField(ENVPAR cache_config, fid); + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading max_size failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "min_size", "J"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: min_size"); + return; + } /* end if */ + cacheinfo.min_size = (size_t)ENVPTR->GetLongField(ENVPAR cache_config, fid); + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading min_size failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "epoch_length", "J"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: epoch_length"); + return; + } + cacheinfo.epoch_length = (long int)ENVPTR->GetLongField(ENVPAR cache_config, fid); + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading epoch_length failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "incr_mode", "I"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: incr_mode"); + return; + } /* end if */ + cacheinfo.incr_mode = ENVPTR->GetIntField(ENVPAR cache_config, fid); /*(enum H5C_cache_incr_mode) */ + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading incr_mode failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "lower_hr_threshold", "D"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: lower_hr_threshold"); + return; + } /* end if */ + cacheinfo.lower_hr_threshold = ENVPTR->GetDoubleField(ENVPAR cache_config, fid); + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading lower_hr_threshold failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "increment", "D"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: increment"); + return; + } /* end if */ + cacheinfo.increment = ENVPTR->GetDoubleField(ENVPAR cache_config, fid); + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading increment failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "apply_max_increment", "Z"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: apply_max_increment"); + return; + } /* end if */ + cacheinfo.apply_max_increment = ENVPTR->GetBooleanField(ENVPAR cache_config, fid); + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading apply_max_increment failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "max_increment", "J"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: max_increment"); + return; + } /* end if */ + cacheinfo.max_increment = (size_t)ENVPTR->GetLongField(ENVPAR cache_config, fid); + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading max_increment failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "flash_incr_mode", "I"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: flash_incr_mode"); + return; + } /* end if */ + cacheinfo.flash_incr_mode = ENVPTR->GetIntField(ENVPAR cache_config, fid); /*(enum H5C_cache_flash_incr_mode) */ + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading flash_incr_mode failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "flash_multiple", "D"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: flash_multiple"); + return; + } /* end if */ + cacheinfo.flash_multiple = ENVPTR->GetDoubleField(ENVPAR cache_config, fid); + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading flash_multiple failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "flash_threshold", "D"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: flash_threshold"); + return; + } /* end if */ + cacheinfo.flash_threshold = ENVPTR->GetDoubleField(ENVPAR cache_config, fid); + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading flash_threshold failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "decr_mode", "I"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: decr_mode"); + return; + } /* end if */ + cacheinfo.decr_mode = ENVPTR->GetIntField(ENVPAR cache_config, fid); /*(enum H5C_cache_decr_mode) */ + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading decr_mode failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "upper_hr_threshold", "D"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: upper_hr_threshold"); + return; + } /* end if */ + cacheinfo.upper_hr_threshold = ENVPTR->GetDoubleField(ENVPAR cache_config, fid); + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading upper_hr_threshold failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "decrement", "D"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: decrement"); + return; + } /* end if */ + cacheinfo.decrement = ENVPTR->GetDoubleField(ENVPAR cache_config, fid); + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading decrement failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "apply_max_decrement", "Z"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: apply_max_decrement"); + return; + } /* end if */ + cacheinfo.apply_max_decrement = ENVPTR->GetBooleanField(ENVPAR cache_config, fid); + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading apply_max_decrement failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "max_decrement", "J"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: max_decrement"); + return; + } /* end if */ + cacheinfo.max_decrement = (size_t)ENVPTR->GetLongField(ENVPAR cache_config, fid); + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading max_decrement failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "epochs_before_eviction", "I"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: epochs_before_eviction"); + return; + } /* end if */ + cacheinfo.epochs_before_eviction = ENVPTR->GetIntField(ENVPAR cache_config, fid); + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading epochs_before_eviction failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "apply_empty_reserve", "Z"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: apply_empty_reserve"); + return; + } /* end if */ + cacheinfo.apply_empty_reserve = ENVPTR->GetBooleanField(ENVPAR cache_config, fid); + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading apply_empty_reserve failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "empty_reserve", "D"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: empty_reserve"); + return; + } /* end if */ + cacheinfo.empty_reserve = ENVPTR->GetDoubleField(ENVPAR cache_config, fid); + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading empty_reserve failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "dirty_bytes_threshold", "J"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: dirty_bytes_threshold"); + return; + } /* end if */ + cacheinfo.dirty_bytes_threshold = (size_t)ENVPTR->GetLongField(ENVPAR cache_config, fid); + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading dirty_bytes_threshold failed"); + return; + } /* end if */ + + fid = ENVPTR->GetFieldID(ENVPAR cls, "metadata_write_strategy", "I"); + if(fid == 0) { + h5badArgument(env, "H5Pset_mdc_config: metadata_write_strategy"); + return; + } /* end if */ + cacheinfo.metadata_write_strategy = ENVPTR->GetIntField(ENVPAR cache_config, fid); + if(ENVPTR->ExceptionOccurred(ENVONLY)) { + h5JNIFatalError(env, "H5Pset_mdc_config: loading metadata_write_strategy failed"); + return; + } /* end if */ + + status = H5Pset_mdc_config((hid_t)plist, &cacheinfo); + + if (status < 0) + h5libraryError(env); +} /* end Java_hdf_hdf5lib_H5_H5Pset_1mdc_1config */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_chunk_cache + * Signature: (JJJD)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1chunk_1cache(JNIEnv *env, jclass clss, jlong dapl, jlong rdcc_nslots, + jlong rdcc_nbytes, jdouble rdcc_w0) +{ + if (H5Pset_chunk_cache((hid_t)dapl, (size_t)rdcc_nslots, (size_t)rdcc_nbytes, (double) rdcc_w0) < 0) + h5libraryError(env); +} /* end Java_hdf_hdf5lib_H5_H5Pset_1chunk_1cache */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_chunk_cache + * Signature: (J[J[J[D)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1chunk_1cache(JNIEnv *env, jclass clss, jlong dapl, jlongArray rdcc_nslots, + jlongArray rdcc_nbytes, jdoubleArray rdcc_w0) +{ + herr_t status = -1; + jint mode; + jdouble *w0Array; + jlong *rdcc_nslotsArray; + jlong *nbytesArray; + jboolean isCopy; + + if (rdcc_w0 == NULL) { + w0Array = (jdouble *)NULL; + } /* end if */ + else { + w0Array = (jdouble *)ENVPTR->GetDoubleArrayElements(ENVPAR rdcc_w0, &isCopy); + if (w0Array == NULL) { + h5JNIFatalError(env, "H5Pget_chunk_cache: w0_array array not pinned"); + return; + } /* end if */ + } /* end else */ + + if (rdcc_nslots == NULL) { + rdcc_nslotsArray = (jlong *)NULL; + } /* end if */ + else { + rdcc_nslotsArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR rdcc_nslots, &isCopy); + if (rdcc_nslotsArray == NULL) { + /* exception -- out of memory */ + if (w0Array != NULL) { + ENVPTR->ReleaseDoubleArrayElements(ENVPAR rdcc_w0, w0Array, JNI_ABORT); + } /* end if */ + h5JNIFatalError(env, "H5Pget_chunk_cache: rdcc_nslots array not pinned"); + return; + } /* end if */ + } /* end else */ + + if (rdcc_nbytes == NULL) { + nbytesArray = (jlong *)NULL; + } /* end if */ + else { + nbytesArray = (jlong *)ENVPTR->GetLongArrayElements(ENVPAR rdcc_nbytes, &isCopy); + if (nbytesArray == NULL) { + if (w0Array != NULL) { + ENVPTR->ReleaseDoubleArrayElements(ENVPAR rdcc_w0, w0Array, JNI_ABORT); + } /* end if */ + if (rdcc_nslotsArray != NULL) { + ENVPTR->ReleaseLongArrayElements(ENVPAR rdcc_nslots, rdcc_nslotsArray, JNI_ABORT); + } /* end if */ + h5JNIFatalError(env, "H5Pget_chunk_cache: nbytesArray array not pinned"); + return; + } /* end if */ + } /* end else */ + + { /* direct cast (size_t *)variable fails on 32-bit environment */ + long long rdcc_nslots_temp = *(rdcc_nslotsArray); + size_t rdcc_nslots_t = (size_t)rdcc_nslots_temp; + long long nbytes_temp = *(nbytesArray); + size_t nbytes_t = (size_t)nbytes_temp; + + status = H5Pget_chunk_cache((hid_t)dapl, &rdcc_nslots_t, &nbytes_t, (double *)w0Array); + + *rdcc_nslotsArray = (jlong)rdcc_nslots_t; + *nbytesArray = (jlong)nbytes_t; + } /* end direct cast special handling */ + + if (status < 0) { + mode = JNI_ABORT; + } /* end if */ + else { + mode = 0; /* commit and free */ + } /* end else */ + + if (rdcc_nslotsArray != NULL) { + ENVPTR->ReleaseLongArrayElements(ENVPAR rdcc_nslots, rdcc_nslotsArray, mode); + } + /* end if */ + if (nbytesArray != NULL) { + ENVPTR->ReleaseLongArrayElements(ENVPAR rdcc_nbytes, nbytesArray, mode); + } /* end if */ + + if (w0Array != NULL) { + ENVPTR->ReleaseDoubleArrayElements(ENVPAR rdcc_w0, w0Array, mode); + } /* end if */ + + if (status < 0) + h5libraryError(env); +} /* end Java_hdf_hdf5lib_H5_H5Pget_1chunk_1cache */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_obj_track_times + * Signature: (J)Z + */ +JNIEXPORT jboolean JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1obj_1track_1times(JNIEnv *env, jclass clss, jlong objplid) +{ + hbool_t track_times; + + if (H5Pget_obj_track_times((hid_t)objplid, &track_times) < 0) { + h5libraryError(env); + return JNI_FALSE; + } /* end if */ + if (track_times == 1) { + return JNI_TRUE; + } /* end if */ + return JNI_FALSE; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1obj_1track_1times */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_obj_track_times + * Signature: (JZ)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1obj_1track_1times(JNIEnv *env, jclass clss, jlong objplid, jboolean track_times) +{ + hbool_t track; + + if (track_times == JNI_TRUE) { + track = 1; + } /* end if */ + else { + track = 0; + } /* end else */ + + if (H5Pset_obj_track_times((hid_t)objplid, track) < 0) + h5libraryError(env); +} /* end Java_hdf_hdf5lib_H5_H5Pset_1obj_1track_1times */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_char_encoding + * Signature: (J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1char_1encoding(JNIEnv *env, jclass clss, jlong acpl) +{ + H5T_cset_t encoding; + + if (H5Pget_char_encoding((hid_t)acpl, &encoding) < 0) + h5libraryError(env); + + return encoding; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1char_1encoding */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_char_encoding + * Signature: (JI)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1char_1encoding(JNIEnv *env, jclass clss, jlong acpl, jint encoding) +{ + if (H5Pset_char_encoding((hid_t)acpl, (H5T_cset_t)encoding) < 0) + h5libraryError(env); +} /* end Java_hdf_hdf5lib_H5_H5Pset_1char_1encoding */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_virtual + * Signature: (JJLjava/lang/String;Ljava/lang/String;J)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1virtual(JNIEnv *env, jclass clss, jlong dcpl_id, jlong vspace_id, + jstring src_file_name, jstring src_dset_name, jlong src_space_id) +{ + herr_t retVal = -1; + const char *fstr; + const char *dstr; + + PIN_JAVA_STRING_TWO0(src_file_name, fstr, src_dset_name, dstr); + + retVal = H5Pset_virtual((hid_t)dcpl_id, (hid_t)vspace_id, fstr, dstr, (hid_t)src_space_id); + + UNPIN_JAVA_STRING_TWO(src_file_name, fstr, src_dset_name, dstr); + + if (retVal < 0) + h5libraryError(env); +} /* end Java_hdf_hdf5lib_H5_H5Pset_1virtual */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_virtual_count + * Signature: (J)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1virtual_1count(JNIEnv *env, jclass clss, jlong dcpl_id) +{ + size_t s; + + if (H5Pget_virtual_count((hid_t)dcpl_id, &s) < 0) + h5libraryError(env); + + return (jlong)s; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1count */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_virtual_vspace + * Signature: (JJ)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1virtual_1vspace(JNIEnv *env, jclass clss, jlong dcpl_id, jlong index) +{ + hid_t space_id = -1; + + space_id = H5Pget_virtual_vspace((hid_t)dcpl_id, (size_t)index); + if (space_id < 0) + h5libraryError(env); + + return (jlong)space_id; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1vspace */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_virtual_srcspace + * Signature: (JJ)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1virtual_1srcspace(JNIEnv *env, jclass clss, jlong dcpl_id, jlong index) +{ + hid_t space_id = -1; + + space_id = H5Pget_virtual_srcspace((hid_t)dcpl_id, (size_t)index); + if (space_id < 0) + h5libraryError(env); + + return (jlong)space_id; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1srcspace */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_virtual_filename + * Signature: (JJ)Ljava/lang/String; + */ +JNIEXPORT jstring JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1virtual_1filename(JNIEnv *env, jclass clss, jlong dcpl_id, jlong index) +{ + char *fname; + ssize_t buf_size; + ssize_t status; + jstring str = NULL; + + /* get the length of the filename */ + buf_size = H5Pget_virtual_filename((hid_t)dcpl_id, (size_t)index, NULL, 0); + if (buf_size < 0) { + h5badArgument( env, "H5Pget_virtual_filename: buf_size < 0"); + } /* end if */ + else if (buf_size >= 0) { + buf_size++; /* add extra space for the null terminator */ + fname = (char *)HDmalloc(sizeof(char) * (size_t)buf_size); + if (fname == NULL) { + h5outOfMemory( env, "H5Pget_virtual_filename: malloc failed"); + } /* end if */ + else { + status = H5Pget_virtual_filename((hid_t)dcpl_id, (size_t)index, fname, (size_t)buf_size); + + if (status >= 0) { + str = ENVPTR->NewStringUTF(ENVPAR fname); + HDfree(fname); + if (str == NULL) + h5JNIFatalError( env, "H5Pget_virtual_filename: return string not allocated"); + } /* end if */ + else { + HDfree(fname); + h5libraryError(env); + } /* end else */ + } /* end else */ + } /* end else if */ + + return (jstring)str; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1filename */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_virtual_dsetname + * Signature: (JJ)Ljava/lang/String; + */ +JNIEXPORT jstring JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1virtual_1dsetname(JNIEnv *env, jclass clss, jlong dcpl_id, jlong index) +{ + char *dname; + ssize_t buf_size; + ssize_t status; + jstring str = NULL; + + /* get the length of the filename */ + buf_size = H5Pget_virtual_dsetname((hid_t)dcpl_id, (size_t)index, NULL, 0); + if (buf_size < 0) { + h5badArgument( env, "H5Pget_virtual_dsetname: buf_size < 0"); + } /* end if */ + else if (buf_size > 0) { + buf_size++; /* add extra space for the null terminator */ + dname = (char *)HDmalloc(sizeof(char) * (size_t)buf_size); + if (dname == NULL) { + h5outOfMemory( env, "H5Pget_virtual_dsetname: malloc failed"); + } /* end if */ + else { + status = H5Pget_virtual_dsetname((hid_t)dcpl_id, (size_t)index, dname, (size_t)buf_size); + + if (status >= 0) { + str = ENVPTR->NewStringUTF(ENVPAR dname); + HDfree(dname); + if (str == NULL) + h5JNIFatalError( env, "H5Pget_virtual_dsetname: return string not allocated"); + } /* end if */ + else { + HDfree(dname); + h5libraryError(env); + } /* end else */ + } /* end else */ + } /* end else if */ + return (jstring)str; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1dsetname */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_virtual_view + * Signature: (J)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1virtual_1view(JNIEnv *env, jclass clss, jlong dapl_id) +{ + H5D_vds_view_t virtual_view; + + if (H5Pget_virtual_view((hid_t)dapl_id, &virtual_view) < 0) + h5libraryError(env); + + return (jint)virtual_view; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1view */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_virtual_view + * Signature: (JI)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1virtual_1view(JNIEnv *env, jclass clss, jlong dapl_id, jint view) +{ + if (H5Pset_virtual_view((hid_t)dapl_id, (H5D_vds_view_t)view) < 0) + h5libraryError(env); +} /* end Java_hdf_hdf5lib_H5_H5Pset_1virtual_1view */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_virtual_printf_gap + * Signature: (J)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1virtual_1printf_1gap(JNIEnv *env, jclass clss, jlong dapl_id) +{ + hsize_t gap_size; + + if (H5Pget_virtual_printf_gap((hid_t)dapl_id, &gap_size) < 0) + h5libraryError(env); + + return (jlong)gap_size; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1printf_1gap */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_virtual_printf_gap + * Signature: (JJ)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1virtual_1printf_1gap(JNIEnv *env, jclass clss, jlong dapl_id, jlong gap_size) +{ + if (H5Pset_virtual_printf_gap((hid_t)dapl_id, (hsize_t)gap_size) < 0) + h5libraryError(env); +} /* end Java_hdf_hdf5lib_H5_H5Pset_1virtual_1printf_1gap */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_file_space + * Signature: (J[I[J)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1file_1space(JNIEnv *env, jclass clss, jlong fcpl_id, jintArray strategy, jlongArray threshold) +{ + herr_t status = -1; + jint *thestrategyArray = NULL; + jlong *thethresholdArray = NULL; + jboolean isCopy; + + if (strategy) { + thestrategyArray = (jint*)ENVPTR->GetIntArrayElements(ENVPAR strategy, &isCopy); + if (thestrategyArray == NULL) { + h5JNIFatalError(env, "H5Pget_file_space: strategy not pinned"); + return; + } + } + + if (threshold) { + thethresholdArray = (jlong*)ENVPTR->GetLongArrayElements(ENVPAR threshold, &isCopy); + if (thethresholdArray == NULL) { + if (strategy) ENVPTR->ReleaseIntArrayElements(ENVPAR strategy, thestrategyArray, JNI_ABORT); + h5JNIFatalError(env, "H5Pget_file_space: threshold not pinned"); + return; + } /* end if */ + } /* end if */ + + status = H5Pget_file_space((hid_t)fcpl_id, (H5F_file_space_type_t*)thestrategyArray, (hsize_t*)thethresholdArray); + + if (status < 0) { + if (strategy) ENVPTR->ReleaseIntArrayElements(ENVPAR strategy, thestrategyArray, JNI_ABORT); + if (threshold) ENVPTR->ReleaseLongArrayElements(ENVPAR threshold, thethresholdArray, JNI_ABORT); + h5libraryError(env); + } /* end if */ + else { + if (strategy) ENVPTR->ReleaseIntArrayElements(ENVPAR strategy, thestrategyArray, 0); + if (threshold) ENVPTR->ReleaseLongArrayElements(ENVPAR threshold, thethresholdArray, 0); + } /* end else */ +} /* end Java_hdf_hdf5lib_H5_H5Pget_1file_1space */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_file_space + * Signature: (JIJ)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1file_1space(JNIEnv *env, jclass clss, jlong fcpl_id, jint strategy, jlong threshold) +{ + if (H5Pset_file_space((hid_t)fcpl_id, (H5F_file_space_type_t)strategy, (hsize_t)threshold) < 0) + h5libraryError(env); +} /* end Java_hdf_hdf5lib_H5_H5Pset_1file_1space */ + + +static herr_t +H5P_cls_create_cb(hid_t prop_id, void *create_data) +{ + JNIEnv *cbenv; + jint status = -1; + jclass cls; + jmethodID mid; + jmethodID constructor; + + if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) { + cls = CBENVPTR->GetObjectClass(CBENVPAR create_callback); + if (cls != 0) { + mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(JLhdf/hdf5lib/callbacks/H5P_cls_create_func_t;)I"); + if (mid != 0) { + /* fprintf(stderr, "JNI H5P_cls_create_func_cb execute\n"); fflush(stderr); */ + status = CBENVPTR->CallIntMethod(CBENVPAR create_callback, mid, prop_id, create_data); + /* fprintf(stderr, "\nJNI H5P_cls_create_func_cb status: %d\n", status); fflush(stderr); */ + } /* end if */ + } /* end if */ + } /* end if */ + JVMPTR->DetachCurrentThread(JVMPAR); + return status; +} /* end H5P_cls_create_cb */ + +static herr_t +H5P_cls_copy_cb(hid_t new_prop_id, hid_t old_prop_id, void *copy_data) +{ + JNIEnv *cbenv; + jint status; + jclass cls; + jmethodID mid; + jmethodID constructor; + + if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) { + cls = CBENVPTR->GetObjectClass(CBENVPAR copy_callback); + if (cls != 0) { + mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(JJLhdf/hdf5lib/callbacks/H5P_cls_copy_func_t;)I"); + if (mid != 0) { + status = CBENVPTR->CallIntMethod(CBENVPAR copy_callback, mid, new_prop_id, old_prop_id, copy_data); + } /* end if */ + } /* end if */ + } /* end if */ + JVMPTR->DetachCurrentThread(JVMPAR); + return status; +} /* end H5P_cls_ccopy_cb */ + +static herr_t +H5P_cls_close_cb(hid_t prop_id, void *close_data) +{ + JNIEnv *cbenv; + jint status; + jclass cls; + jmethodID mid; + jmethodID constructor; + + if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) { + cls = CBENVPTR->GetObjectClass(CBENVPAR close_callback); + if (cls != 0) { + mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(JLhdf/hdf5lib/callbacks/H5P_cls_close_func_t;)I"); + if (mid != 0) { + status = CBENVPTR->CallIntMethod(CBENVPAR close_callback, mid, prop_id, close_data); + } /* end if */ + } /* end if */ + } /* end if */ + JVMPTR->DetachCurrentThread(JVMPAR); + return status; +} /* end H5P_cls_close_cb */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: _H5Pcreate_class_nocb + * Signature: (JLjava/lang/String;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5__1H5Pcreate_1class_1nocb(JNIEnv *env, jclass clss, jlong parent_class, jstring name) +{ + hid_t class_id = -1; + const char *cstr; + + PIN_JAVA_STRING(name, cstr, -1); + + class_id = H5Pcreate_class((hid_t)parent_class, cstr, NULL, NULL, NULL, NULL, NULL, NULL); + + UNPIN_JAVA_STRING(name, cstr); + + if (class_id < 0) + h5libraryError(env); + + return (jlong)class_id; +} /* end Java_hdf_hdf5lib_H5__1H5Pcreate_1class_1nocb */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: _H5Pcreate_class + * Signature: (JLjava/lang/String;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5__1H5Pcreate_1class(JNIEnv *env, jclass clss, jlong parent_class, jstring name, jobject create_op, + jobject create_data, jobject copy_op, jobject copy_data, jobject close_op, jobject close_data) +{ + hid_t class_id = -1; + const char *cstr; + copy_callback = copy_op; + close_callback = close_op; + create_callback = create_op; + + PIN_JAVA_STRING(name, cstr, -1); + + class_id = H5Pcreate_class((hid_t)parent_class, cstr, (H5P_cls_create_func_t)H5P_cls_create_cb, (void*) create_data, + (H5P_cls_copy_func_t)H5P_cls_copy_cb, (void*) copy_data, (H5P_cls_close_func_t)H5P_cls_close_cb, (void*) close_data); + + UNPIN_JAVA_STRING(name, cstr); + + if (class_id < 0) + h5libraryError(env); + + return (jlong)class_id; +} /* end Java_hdf_hdf5lib_H5__1H5Pcreate_1class */ + +static herr_t +H5P_prp_create_cb(const char *name, size_t size, void *value) +{ + JNIEnv *cbenv; + jint status; + jclass cls; + jmethodID mid; + jmethodID constructor; + jstring str; + + if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) { + cls = CBENVPTR->GetObjectClass(CBENVPAR create_callback); + if (cls != 0) { + mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(Ljava/lang/String;J[B)I"); + if (mid != 0) { + str = CBENVPTR->NewStringUTF(CBENVPAR name); + status = CBENVPTR->CallIntMethod(CBENVPAR create_callback, mid, str, size, value); + } /* end if */ + } /* end if */ + } /* end if */ + JVMPTR->DetachCurrentThread(JVMPAR); + return status; +} /* end H5P_prp_create_cb */ + +static herr_t +H5P_prp_copy_cb(const char *name, size_t size, void *value) +{ + JNIEnv *cbenv; + jint status; + jclass cls; + jmethodID mid; + jmethodID constructor; + jstring str; + + if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) { + cls = CBENVPTR->GetObjectClass(CBENVPAR copy_callback); + if (cls != 0) { + mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(Ljava/lang/String;J[B)I"); + if (mid != 0) { + str = CBENVPTR->NewStringUTF(CBENVPAR name); + status = CBENVPTR->CallIntMethod(CBENVPAR copy_callback, mid, str, size, value); + } /* end if */ + } /* end if */ + } /* end if */ + JVMPTR->DetachCurrentThread(JVMPAR); + return status; +} /* end H5P_prp_copy_cb */ + +static herr_t +H5P_prp_close_cb(const char *name, size_t size, void *value) +{ + JNIEnv *cbenv; + jint status; + jclass cls; + jmethodID mid; + jmethodID constructor; + jstring str; + + if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) { + cls = CBENVPTR->GetObjectClass(CBENVPAR close_callback); + if (cls != 0) { + mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(Ljava/lang/String;J[B)I"); + if (mid != 0) { + str = CBENVPTR->NewStringUTF(CBENVPAR name); + status = CBENVPTR->CallIntMethod(CBENVPAR close_callback, mid, str, size, value); + } /* end if */ + } /* end if */ + } /* end if */ + JVMPTR->DetachCurrentThread(JVMPAR); + return status; +} /* end H5P_prp_close_cb */ + +static int +H5P_prp_compare_cb(void *value1, void *value2, size_t size) +{ + JNIEnv *cbenv; + jint status; + jclass cls; + jmethodID mid; + jmethodID constructor; + + if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) { + cls = CBENVPTR->GetObjectClass(CBENVPAR compare_callback); + if (cls != 0) { + mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "([B[BJ)I"); + if (mid != 0) { + status = CBENVPTR->CallIntMethod(CBENVPAR compare_callback, mid, value1, value2, size); + } /* end if */ + } /* end if */ + } /* end if */ + JVMPTR->DetachCurrentThread(JVMPAR); + return status; +} /* end H5P_prp_compare_cb */ + +static herr_t +H5P_prp_get_cb(hid_t prop_id, const char *name, size_t size, void *value) +{ + JNIEnv *cbenv; + jint status; + jclass cls; + jmethodID mid; + jmethodID constructor; + jstring str; + + if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) { + cls = CBENVPTR->GetObjectClass(CBENVPAR get_callback); + if (cls != 0) { + mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(JLjava/lang/String;J[B)I"); + if (mid != 0) { + str = CBENVPTR->NewStringUTF(CBENVPAR name); + status = CBENVPTR->CallIntMethod(CBENVPAR get_callback, mid, prop_id, str, size, value); + } /* end if */ + } /* end if */ + } /* end if */ + JVMPTR->DetachCurrentThread(JVMPAR); + return status; +} /* end H5P_prp_get_cb */ + +static herr_t +H5P_prp_set_cb(hid_t prop_id, const char *name, size_t size, void *value) +{ + JNIEnv *cbenv; + jint status; + jclass cls; + jmethodID mid; + jmethodID constructor; + jstring str; + + if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) { + cls = CBENVPTR->GetObjectClass(CBENVPAR set_callback); + if (cls != 0) { + mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(JLjava/lang/String;J[B)I"); + if (mid != 0) { + str = CBENVPTR->NewStringUTF(CBENVPAR name); + status = CBENVPTR->CallIntMethod(CBENVPAR set_callback, mid, prop_id, str, size, value); + } /* end if */ + } /* end if */ + } /* end if */ + JVMPTR->DetachCurrentThread(JVMPAR); + return status; +} /* end H5P_prp_set_cb */ + +static herr_t +H5P_prp_delete_cb(hid_t prop_id, const char *name, size_t size, void *value) +{ + JNIEnv *cbenv; + jint status; + jclass cls; + jmethodID mid; + jmethodID constructor; + jstring str; + + if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) == 0) { + cls = CBENVPTR->GetObjectClass(CBENVPAR delete_callback); + if (cls != 0) { + mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(JLjava/lang/String;J[B)I"); + if (mid != 0) { + str = CBENVPTR->NewStringUTF(CBENVPAR name); + status = CBENVPTR->CallIntMethod(CBENVPAR delete_callback, mid, prop_id, str, size, value); + } /* end if */ + } /* end if */ + } /* end if */ + JVMPTR->DetachCurrentThread(JVMPAR); + return status; +} /* end H5P_prp_delete_cb */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pregister2_nocb + * Signature: (JLjava/lang/String;J[B)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Pregister2_1nocb(JNIEnv *env, jclass clss, jlong cls_id, jstring name, jlong prp_size, jbyteArray def_value) +{ + herr_t status = -1; + jbyte *buffP; + jboolean isCopy2; + const char *cstr; + + PIN_JAVA_STRING0(name, cstr); + buffP = ENVPTR->GetByteArrayElements(ENVPAR def_value, &isCopy2); + if (buffP == NULL) { + UNPIN_JAVA_STRING(name, cstr); + h5JNIFatalError(env, "H5Pregister2: buf not pinned"); + } /* end if */ + else { + status = H5Pregister2((hid_t)cls_id, cstr, (size_t)prp_size, (void*)buffP, NULL, NULL, NULL, NULL, NULL, NULL, NULL); + + UNPIN_JAVA_STRING(name, cstr); + if (status < 0) { + ENVPTR->ReleaseByteArrayElements(ENVPAR def_value, buffP, JNI_ABORT); + h5libraryError(env); + } /* end if */ + else { + ENVPTR->ReleaseByteArrayElements(ENVPAR def_value, buffP, 0); + } /* end else */ + } /* end else */ +} /* end Java_hdf_hdf5lib_H5_H5Pregister2_1nocb */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pregister2 + * Signature: (JLjava/lang/String;J[BLjava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Pregister2(JNIEnv *env, jclass clss, jlong cls_id, jstring name, jlong prp_size, + jbyteArray def_value, jobject prp_create, jobject prp_set, jobject prp_get, jobject prp_delete, + jobject prp_copy, jobject prp_cmp, jobject prp_close) +{ + herr_t status = -1; + jbyte *buffP; + jboolean isCopy2; + const char *cstr; + copy_callback = prp_copy; + close_callback = prp_close; + create_callback = prp_create; + compare_callback = prp_cmp; + set_callback = prp_set; + get_callback = prp_get; + delete_callback = prp_delete; + + PIN_JAVA_STRING0(name, cstr); + buffP = ENVPTR->GetByteArrayElements(ENVPAR def_value, &isCopy2); + if (buffP == NULL) { + UNPIN_JAVA_STRING(name, cstr); + h5JNIFatalError(env, "H5Pregister2: buf not pinned"); + } /* end if */ + else { + status = H5Pregister2((hid_t)cls_id, cstr, (size_t)prp_size, (void*)buffP, (H5P_prp_create_func_t)H5P_prp_create_cb, + (H5P_prp_set_func_t)H5P_prp_set_cb, (H5P_prp_get_func_t)H5P_prp_get_cb, (H5P_prp_delete_func_t)H5P_prp_delete_cb, + (H5P_prp_copy_func_t)H5P_prp_copy_cb, (H5P_prp_compare_func_t)H5P_prp_compare_cb, (H5P_prp_close_func_t)H5P_prp_close_cb); + + UNPIN_JAVA_STRING(name, cstr); + if (status < 0) { + ENVPTR->ReleaseByteArrayElements(ENVPAR def_value, buffP, JNI_ABORT); + h5libraryError(env); + } /* end if */ + else { + ENVPTR->ReleaseByteArrayElements(ENVPAR def_value, buffP, 0); + } /* end else */ + } /* end else */ +} /* end Java_hdf_hdf5lib_H5_H5Pregister2 */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pinsert2_nocb + * Signature: (JLjava/lang/String;J[B)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Pinsert2_1nocb(JNIEnv *env, jclass clss, jlong cls_id, jstring name, jlong prp_size, jbyteArray def_value) +{ + herr_t status = -1; + jbyte *buffP; + jboolean isCopy2; + const char *cstr; + + PIN_JAVA_STRING0(name, cstr); + buffP = ENVPTR->GetByteArrayElements(ENVPAR def_value, &isCopy2); + if (buffP == NULL) { + UNPIN_JAVA_STRING(name, cstr); + h5JNIFatalError(env, "H5Pinsert2: buf not pinned"); + } /* end if */ + else { + status = H5Pinsert2((hid_t)cls_id, cstr, (size_t)prp_size, (void*)buffP, NULL, NULL, NULL, NULL, NULL, NULL); + + UNPIN_JAVA_STRING(name, cstr); + if (status < 0) { + ENVPTR->ReleaseByteArrayElements(ENVPAR def_value, buffP, JNI_ABORT); + h5libraryError(env); + } /* end if */ + else { + ENVPTR->ReleaseByteArrayElements(ENVPAR def_value, buffP, 0); + } /* end else */ + } /* end else */ +} /* end Java_hdf_hdf5lib_H5_H5Pinsert2 */ + + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pinsert2 + * Signature: (JLjava/lang/String;J[BLjava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Pinsert2(JNIEnv *env, jclass clss, jlong cls_id, jstring name, jlong prp_size, + jbyteArray def_value, jobject prp_set, jobject prp_get, jobject prp_delete, + jobject prp_copy, jobject prp_cmp, jobject prp_close) +{ + herr_t status = -1; + jbyte *buffP; + jboolean isCopy2; + const char *cstr; + copy_callback = prp_copy; + close_callback = prp_close; + compare_callback = prp_cmp; + set_callback = prp_set; + get_callback = prp_get; + delete_callback = prp_delete; + + PIN_JAVA_STRING0(name, cstr); + buffP = ENVPTR->GetByteArrayElements(ENVPAR def_value, &isCopy2); + if (buffP == NULL) { + UNPIN_JAVA_STRING(name, cstr); + h5JNIFatalError(env, "H5Pinsert2: buf not pinned"); + } /* end if */ + else { + status = H5Pinsert2((hid_t)cls_id, cstr, (size_t)prp_size, (void*)buffP, + (H5P_prp_set_func_t)H5P_prp_set_cb, (H5P_prp_get_func_t)H5P_prp_get_cb, (H5P_prp_delete_func_t)H5P_prp_delete_cb, + (H5P_prp_copy_func_t)H5P_prp_copy_cb, (H5P_prp_compare_func_t)H5P_prp_compare_cb, (H5P_prp_close_func_t)H5P_prp_close_cb); + + UNPIN_JAVA_STRING(name, cstr); + if (status < 0) { + ENVPTR->ReleaseByteArrayElements(ENVPAR def_value, buffP, JNI_ABORT); + h5libraryError(env); + } /* end if */ + else { + ENVPTR->ReleaseByteArrayElements(ENVPAR def_value, buffP, 0); + } /* end else */ + } /* end else */ +} /* end Java_hdf_hdf5lib_H5_H5Pinsert2 */ + +static herr_t +H5P_iterate_cb(hid_t prop_id, const char *name, void *op_data) +{ + JNIEnv *cbenv; + jint status = -1; + jclass cls; + jmethodID mid; + jstring str; + jmethodID constructor; + + /* fprintf(stderr, "\nJNI H5P_iterate_cb entered\n"); fflush(stderr); */ + if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) != 0) { + /* fprintf(stderr, "\nJNI H5P_iterate_cb error: AttachCurrentThread failed\n"); fflush(stderr); */ + JVMPTR->DetachCurrentThread(JVMPAR); + } /* end if */ + else { + cls = CBENVPTR->GetObjectClass(CBENVPAR visit_callback); + if (cls == 0) { + /* fprintf(stderr, "\nJNI H5P_iterate_cb error: GetObjectClass failed\n"); fflush(stderr); */ + JVMPTR->DetachCurrentThread(JVMPAR); + } /* end if */ + else { + mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(JLjava/lang/String;Lhdf/hdf5lib/callbacks/H5P_iterate_t;)I"); + if (mid == 0) { + /* fprintf(stderr, "\nJNI H5P_iterate_cb error: GetMethodID failed\n"); fflush(stderr); */ + JVMPTR->DetachCurrentThread(JVMPAR); + } /* end if */ + else { + str = CBENVPTR->NewStringUTF(CBENVPAR name); + + /* fprintf(stderr, "JNI H5P_iterate_cb execute\n"); fflush(stderr); */ + status = CBENVPTR->CallIntMethod(CBENVPAR visit_callback, mid, prop_id, str, op_data); + /* fprintf(stderr, "\nJNI H5P_iterate_cb status: %d\n", status); fflush(stderr); */ + } /* end else */ + } /* end else */ + } /* end else */ + + JVMPTR->DetachCurrentThread(JVMPAR); + /* fprintf(stderr, "\nJNI H5P_iterate_cb leave\n"); fflush(stderr); */ + + return status; +} /* end H5P_iterate_cb */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Piterate + * Signature: (J[ILjava/lang/Object;Ljava/lang/Object;)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Piterate(JNIEnv *env, jclass clss, jlong prop_id, jintArray idx, + jobject callback_op, jobject op_data) +{ + herr_t status = -1; + jint *theArray = NULL; + jboolean isCopy; + + ENVPTR->GetJavaVM(ENVPAR &jvm); + visit_callback = callback_op; + + if (op_data == NULL) { + h5nullArgument(env, "H5Piterate: op_data is NULL"); + } /* end if */ + else if (callback_op == NULL) { + h5nullArgument(env, "H5Piterate: callback_op is NULL"); + } /* end else if */ + else { + if (idx == NULL) { + status = H5Piterate((hid_t)prop_id, NULL, (H5P_iterate_t)H5P_iterate_cb, (void*)op_data); + } /* end if */ + else { + theArray = (jint *)ENVPTR->GetIntArrayElements(ENVPAR idx, &isCopy); + if (theArray == NULL) { + h5JNIFatalError(env, "H5Piterate: idx not pinned"); + return -1; + } /* end if */ + status = H5Piterate((hid_t)prop_id, (int*)&theArray[0], (H5P_iterate_t)H5P_iterate_cb, (void*)op_data); + } /* end else */ + + if (status < 0) { + if(idx) + ENVPTR->ReleaseIntArrayElements(ENVPAR idx, theArray, JNI_ABORT); + h5libraryError(env); + } /* end if */ + else if (idx) + ENVPTR->ReleaseIntArrayElements(ENVPAR idx, theArray, 0); + } /* end else */ + + return status; +} /* end Java_hdf_hdf5lib_H5_H5Piterate */ + +#ifdef __cplusplus +} /* end extern "C" */ +#endif /* __cplusplus */ |