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-rw-r--r--java/src/jni/h5Constants.c6
-rw-r--r--java/src/jni/h5fImp.c73
-rw-r--r--java/src/jni/h5fImp.h32
-rw-r--r--java/src/jni/h5pImp.c160
-rw-r--r--java/src/jni/h5pImp.h24
-rw-r--r--java/src/jni/h5tImp.c6
-rw-r--r--java/src/jni/h5tImp.h4
7 files changed, 298 insertions, 7 deletions
diff --git a/java/src/jni/h5Constants.c b/java/src/jni/h5Constants.c
index f1d49be..1b94315 100644
--- a/java/src/jni/h5Constants.c
+++ b/java/src/jni/h5Constants.c
@@ -200,6 +200,8 @@ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5F_1ACC_1RDONLY(JNIEnv *e
JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5F_1ACC_1RDWR(JNIEnv *env, jclass cls) { return H5F_ACC_RDWR; }
JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5F_1ACC_1TRUNC(JNIEnv *env, jclass cls) { return H5F_ACC_TRUNC; }
JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5F_1ACC_1DEFAULT(JNIEnv *env, jclass cls) { return H5F_ACC_DEFAULT; }
+JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5F_1ACC_1SWMR_1READ(JNIEnv *env, jclass cls) { return H5F_ACC_SWMR_READ; }
+JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5F_1ACC_1SWMR_1WRITE(JNIEnv *env, jclass cls) { return H5F_ACC_SWMR_WRITE; }
#pragma GCC diagnostic pop
JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5F_1CLOSE_1DEFAULT(JNIEnv *env, jclass cls) { return H5F_CLOSE_DEFAULT; }
@@ -375,8 +377,8 @@ JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5P_1GROUP_1ACCESS(JNIEnv
JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5P_1DATATYPE_1CREATE(JNIEnv *env, jclass cls){return H5P_DATATYPE_CREATE;}
JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5P_1DATATYPE_1ACCESS(JNIEnv *env, jclass cls){return H5P_DATATYPE_ACCESS;}
JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5P_1STRING_1CREATE(JNIEnv *env, jclass cls){return H5P_STRING_CREATE;}
-JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5P_1ATTRIBUTE_1CREATE(JNIEnv *env, jclass cls){return H5P_ATTRIBUTE_CREATE;}
JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5P_1ATTRIBUTE_1ACCESS(JNIEnv *env, jclass cls){return H5P_ATTRIBUTE_ACCESS;}
+JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5P_1ATTRIBUTE_1CREATE(JNIEnv *env, jclass cls){return H5P_ATTRIBUTE_CREATE;}
JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5P_1OBJECT_1COPY(JNIEnv *env, jclass cls){return H5P_OBJECT_COPY;}
JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5P_1LINK_1CREATE(JNIEnv *env, jclass cls){return H5P_LINK_CREATE;}
JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5P_1LINK_1ACCESS(JNIEnv *env, jclass cls){return H5P_LINK_ACCESS;}
@@ -390,8 +392,8 @@ JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5P_1GROUP_1CREATE_1DEFAU
JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5P_1GROUP_1ACCESS_1DEFAULT(JNIEnv *env, jclass cls){return H5P_GROUP_ACCESS_DEFAULT;}
JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5P_1DATATYPE_1CREATE_1DEFAULT(JNIEnv *env, jclass cls){return H5P_DATATYPE_CREATE_DEFAULT;}
JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5P_1DATATYPE_1ACCESS_1DEFAULT(JNIEnv *env, jclass cls){return H5P_DATATYPE_ACCESS_DEFAULT;}
-JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5P_1ATTRIBUTE_1CREATE_1DEFAULT(JNIEnv *env, jclass cls){return H5P_ATTRIBUTE_CREATE_DEFAULT;}
JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5P_1ATTRIBUTE_1ACCESS_1DEFAULT(JNIEnv *env, jclass cls){return H5P_ATTRIBUTE_ACCESS_DEFAULT;}
+JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5P_1ATTRIBUTE_1CREATE_1DEFAULT(JNIEnv *env, jclass cls){return H5P_ATTRIBUTE_CREATE_DEFAULT;}
JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5P_1OBJECT_1COPY_1DEFAULT(JNIEnv *env, jclass cls){return H5P_OBJECT_COPY_DEFAULT;}
JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5P_1LINK_1CREATE_1DEFAULT(JNIEnv *env, jclass cls){return H5P_LINK_CREATE_DEFAULT;}
JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5P_1LINK_1ACCESS_1DEFAULT(JNIEnv *env, jclass cls){return H5P_LINK_ACCESS_DEFAULT;}
diff --git a/java/src/jni/h5fImp.c b/java/src/jni/h5fImp.c
index b484fb2..1666940 100644
--- a/java/src/jni/h5fImp.c
+++ b/java/src/jni/h5fImp.c
@@ -510,6 +510,79 @@ Java_hdf_hdf5lib_H5_H5Fclear_1elink_1file_1cache(JNIEnv *env, jclass cls, jlong
h5libraryError(env);
} /* end Java_hdf_hdf5lib_H5_H5Fclear_1elink_1file_1cache */
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Fstart_swmr_write
+ * Signature: (J)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Fstart_1swmr_1write(JNIEnv *env, jclass cls, jlong file_id)
+{
+ if (H5Fstart_swmr_write((hid_t)file_id) < 0)
+ h5libraryError(env);
+} /* end Java_hdf_hdf5lib_H5_H5Fstart_1swmr_1write */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Fstart_mdc_logging
+ * Signature: (J)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Fstart_1mdc_1logging(JNIEnv *env, jclass cls, jlong file_id)
+{
+ if (H5Fstart_mdc_logging((hid_t)file_id) < 0)
+ h5libraryError(env);
+} /* end Java_hdf_hdf5lib_H5_H5Fstart_1mdc_1logging */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Fstop_mdc_logging
+ * Signature: (J)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Fstop_1mdc_1logging (JNIEnv *env, jclass cls, jlong file_id)
+{
+ if (H5Fstop_mdc_logging((hid_t)file_id) < 0)
+ h5libraryError(env);
+} /* end Java_hdf_hdf5lib_H5_H5Fstop_1mdc_1logging */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Fget_mdc_logging_status
+ * Signature: (J[Z)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Fget_1mdc_1logging_1status(JNIEnv *env, jclass cls, jlong file_id,
+ jbooleanArray mdc_logging_status)
+{
+ hbool_t is_enabled;
+ hbool_t is_currently_logging;
+ jboolean *mdc_logging_status_ptr;
+ jint size;
+ jboolean isCopy;
+
+ if (mdc_logging_status == NULL) {
+ h5nullArgument(env, "H5Fget_mdc_logging_status: mdc_logging_status is NULL");
+ } /* end if */
+ else {
+ size = (int)ENVPTR->GetArrayLength(ENVPAR mdc_logging_status);
+ if (size < 2) {
+ h5badArgument(env, "H5Fget_mdc_logging_status: length of mdc_logging_status < 2.");
+ } /* end if */
+ else {
+ if (H5Fget_mdc_logging_status((hid_t)file_id, &is_enabled, &is_currently_logging) < 0) {
+ h5libraryError(env);
+ } /* end if */
+ else {
+ mdc_logging_status_ptr = ENVPTR->GetBooleanArrayElements(ENVPAR mdc_logging_status, &isCopy);
+ mdc_logging_status_ptr[0] = (jboolean)is_enabled;
+ mdc_logging_status_ptr[1] = (jboolean)is_currently_logging;
+ ENVPTR->ReleaseBooleanArrayElements(ENVPAR mdc_logging_status, mdc_logging_status_ptr, 0);
+ } /* end else */
+ } /* end else */
+ } /* end else */
+} /* end Java_hdf_hdf5lib_H5_H5Fget_1mdc_1logging_1status */
+
#ifdef __cplusplus
} /* end extern "C" */
diff --git a/java/src/jni/h5fImp.h b/java/src/jni/h5fImp.h
index 5a72fab..909d1b8 100644
--- a/java/src/jni/h5fImp.h
+++ b/java/src/jni/h5fImp.h
@@ -191,6 +191,38 @@ JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Fget_1info
JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Fclear_1elink_1file_1cache
(JNIEnv *, jclass, jlong);
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Fstart_swmr_write
+ * Signature: (J)V
+ */
+JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Fstart_1swmr_1write
+ (JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Fstart_mdc_logging
+ * Signature: (J)V
+ */
+JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Fstart_1mdc_1logging
+ (JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Fstop_mdc_logging
+ * Signature: (J)V
+ */
+JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Fstop_1mdc_1logging
+ (JNIEnv *, jclass, jlong);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Fget_mdc_logging_status
+ * Signature: (J[Z)V
+ */
+JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Fget_1mdc_1logging_1status
+ (JNIEnv *, jclass, jlong, jbooleanArray);
+
#ifdef __cplusplus
} /* end extern "C" */
#endif /* __cplusplus */
diff --git a/java/src/jni/h5pImp.c b/java/src/jni/h5pImp.c
index f4fee74..eb83bb0 100644
--- a/java/src/jni/h5pImp.c
+++ b/java/src/jni/h5pImp.c
@@ -4880,6 +4880,166 @@ H5P_cls_close_cb(hid_t prop_id, void *close_data)
/*
* Class: hdf_hdf5lib_H5
+ * Method: H5Pset_mdc_log_options
+ * Signature: (JZLjava/lang/String;Z)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1mdc_1log_1options(JNIEnv *env, jclass clss, jlong fapl_id, jboolean is_enabled, jstring location, jboolean start_on_access)
+{
+ herr_t retVal = -1;
+ const char *lstr;
+
+ PIN_JAVA_STRING0(location, lstr);
+
+ retVal = H5Pset_mdc_log_options((hid_t)fapl_id, (hbool_t)is_enabled, lstr, (hbool_t)start_on_access);
+
+ UNPIN_JAVA_STRING(location, lstr);
+
+ if (retVal < 0) {
+ h5libraryError(env);
+ }
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1mdc_1log_1options */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_mdc_log_options
+ * Signature: (J[Z)Ljava/lang/String;
+ */
+JNIEXPORT jstring JNICALL
+Java_hdf_hdf5lib_H5_H5Pget_1mdc_1log_1options(JNIEnv *env, jclass clss, jlong fapl_id, jbooleanArray mdc_log_options)
+{
+ hbool_t is_enabled;
+ hbool_t start_on_access;
+ jboolean *mdc_log_options_ptr;
+ char *lname;
+ size_t location_size;
+ ssize_t status;
+ jstring str = NULL;
+ jint size;
+ jboolean isCopy;
+
+ if (mdc_log_options == NULL) {
+ h5nullArgument(env, "H5Fget_mdc_log_options: mdc_log_options is NULL");
+ } /* end if */
+ else {
+ size = (int)ENVPTR->GetArrayLength(ENVPAR mdc_log_options);
+ if (size < 2) {
+ h5badArgument(env, "H5Fget_mdc_log_options: length of mdc_log_options < 2.");
+ } /* end if */
+ else {
+ /* get the length of the filename */
+ H5Pget_mdc_log_options((hid_t)fapl_id, &is_enabled, NULL, &location_size, &start_on_access);
+ if (location_size < 0) {
+ h5badArgument(env, "H5Pget_mdc_log_options: location_size < 0");
+ }/* end if */
+ else if (location_size > 0) {
+ location_size++; /* add extra space for the null terminator */
+ lname = (char *)HDmalloc(sizeof(char) * location_size);
+ if (lname == NULL) {
+ h5outOfMemory(env, "H5Pget_mdc_log_options: malloc failed");
+ } /* end if */
+ else {
+ status = H5Pget_mdc_log_options((hid_t)fapl_id, &is_enabled, lname, &location_size, &start_on_access);
+
+ if (status < 0) {
+ HDfree(lname);
+ h5libraryError(env);
+ } /* end if */
+ else {
+ str = ENVPTR->NewStringUTF(ENVPAR lname);
+ HDfree(lname);
+ if (str == NULL) {
+ h5JNIFatalError(env, "H5Pget_mdc_log_options: return string not allocated");
+ } /* end if */
+ else {
+ mdc_log_options_ptr = ENVPTR->GetBooleanArrayElements(ENVPAR mdc_log_options, &isCopy);
+ mdc_log_options_ptr[0] = (jboolean)is_enabled;
+ mdc_log_options_ptr[1] = (jboolean)start_on_access;
+ ENVPTR->ReleaseBooleanArrayElements(ENVPAR mdc_log_options, mdc_log_options_ptr, 0);
+ } /* end else */
+ } /* end else */
+ } /* end else */
+ } /* end else if*/
+ } /* end else */
+ } /* end else */
+
+ return (jstring)str;
+} /* end if */
+
+static herr_t
+H5D_append_cb(hid_t dataset_id, hsize_t *cur_dims, void *op_data)
+{
+ JNIEnv *cbenv;
+ jint status;
+ jclass cls;
+ jmethodID mid;
+ jlongArray cur_dimsArray;
+ jsize size;
+
+ if(JVMPTR->AttachCurrentThread(JVMPAR2 (void**)&cbenv, NULL) != 0) {
+ JVMPTR->DetachCurrentThread(JVMPAR);
+ return -1;
+ } /* end if */
+ cls = CBENVPTR->GetObjectClass(CBENVPAR visit_callback);
+ if (cls == 0) {
+ JVMPTR->DetachCurrentThread(JVMPAR);
+ return -1;
+ } /* end if */
+ mid = CBENVPTR->GetMethodID(CBENVPAR cls, "callback", "(J[JLhdf/hdf5lib/callbacks/H5D_append_t;)I");
+ if (mid == 0) {
+ JVMPTR->DetachCurrentThread(JVMPAR);
+ return -1;
+ } /* end if */
+
+ if (cur_dims == NULL) {
+ JVMPTR->DetachCurrentThread(JVMPAR);
+ return -1;
+ } /* end if */
+
+ cur_dimsArray = CBENVPTR->NewLongArray(CBENVPAR 2);
+ if (cur_dimsArray == NULL) {
+ JVMPTR->DetachCurrentThread(JVMPAR);
+ return -1;
+ } /* end if */
+ CBENVPTR->SetLongArrayRegion(CBENVPAR cur_dimsArray, 0, 2, (const jlong *)cur_dims);
+
+ status = CBENVPTR->CallIntMethod(CBENVPAR visit_callback, mid, dataset_id, cur_dims, op_data);
+
+ JVMPTR->DetachCurrentThread(JVMPAR);
+
+ return status;
+} /* end H5D_append_cb */
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_append_flush
+ * Signature: (JI[JLjava/lang/Object;Ljava/lang/Object;)V
+ */
+JNIEXPORT void JNICALL
+Java_hdf_hdf5lib_H5_H5Pset_1append_1flush(JNIEnv *env, jclass clss, jlong plist_id, jint ndims, jlongArray boundary,
+ jobject callback_op, jobject op_data)
+{
+ herr_t status = -1;
+
+ ENVPTR->GetJavaVM(ENVPAR &jvm);
+ visit_callback = callback_op;
+
+ if (op_data == NULL) {
+ h5nullArgument(env, "H5Ovisit: op_data is NULL");
+ } /* end if */
+ else if (callback_op == NULL) {
+ h5nullArgument(env, "H5Ovisit: callback_op is NULL");
+ } /* end if */
+ else {
+ status = H5Pset_append_flush((hid_t)plist_id, (unsigned)ndims, (const hsize_t*)boundary, (H5D_append_cb_t)H5D_append_cb, (void*)op_data);
+
+ if (status < 0)
+ h5libraryError(env);
+ } /* end else */
+} /* end Java_hdf_hdf5lib_H5_H5Pset_1append_1flush */
+
+/*
+ * Class: hdf_hdf5lib_H5
* Method: _H5Pcreate_class_nocb
* Signature: (JLjava/lang/String;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)J
*/
diff --git a/java/src/jni/h5pImp.h b/java/src/jni/h5pImp.h
index ea1ee52..22c817e 100644
--- a/java/src/jni/h5pImp.h
+++ b/java/src/jni/h5pImp.h
@@ -1252,6 +1252,30 @@ JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1file_1space
/*
* Class: hdf_hdf5lib_H5
+ * Method: H5Pset_mdc_log_options
+ * Signature: (JZLjava/lang/String;Z)V
+ */
+JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1mdc_1log_1options
+(JNIEnv *, jclass, jlong, jboolean, jstring, jboolean);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pget_mdc_log_options
+ * Signature: (J[Z)Ljava/lang/String;
+ */
+JNIEXPORT jstring JNICALL Java_hdf_hdf5lib_H5_H5Pget_1mdc_1log_1options
+(JNIEnv *, jclass, jlong, jbooleanArray);
+
+/*
+ * Class: hdf_hdf5lib_H5
+ * Method: H5Pset_append_flush
+ * Signature: (JI[JLjava/lang/Object;Ljava/lang/Object;)V
+ */
+JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1append_1flush
+ (JNIEnv*, jclass, jlong, jint, jlongArray, jobject, jobject);
+
+/*
+ * Class: hdf_hdf5lib_H5
* Method: _H5Pcreate_class_nocb
* Signature: (JLjava/lang/String;)J
*/
diff --git a/java/src/jni/h5tImp.c b/java/src/jni/h5tImp.c
index 1f587de..83882a0 100644
--- a/java/src/jni/h5tImp.c
+++ b/java/src/jni/h5tImp.c
@@ -1386,9 +1386,9 @@ Java_hdf_hdf5lib_H5_H5Tis_1variable_1str(JNIEnv *env, jclass clss, jlong type_id
/*
* Class: hdf_hdf5lib_H5
* Method: H5Tget_native_type
- * Signature: (JI)J
+ * Signature: (JI)I
*/
-JNIEXPORT jlong JNICALL
+JNIEXPORT jint JNICALL
Java_hdf_hdf5lib_H5__1H5Tget_1native_1type(JNIEnv *env, jclass clss, jlong type_id, jint direction)
{
hid_t native_tid = -1;
@@ -1398,7 +1398,7 @@ Java_hdf_hdf5lib_H5__1H5Tget_1native_1type(JNIEnv *env, jclass clss, jlong type_
if (native_tid < 0)
h5libraryError(env);
- return (jlong)native_tid;
+ return (jint)native_tid;
} /* end Java_hdf_hdf5lib_H5__1H5Tget_1native_1type */
/*
diff --git a/java/src/jni/h5tImp.h b/java/src/jni/h5tImp.h
index 9755a91..f9e6985 100644
--- a/java/src/jni/h5tImp.h
+++ b/java/src/jni/h5tImp.h
@@ -498,9 +498,9 @@ JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Tis_1variable_1str
/*
* Class: hdf_hdf5lib_H5
* Method: H5Tget_native_type
- * Signature: (JI)J
+ * Signature: (JI)I
*/
-JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Tget_1native_1type
+JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5__1H5Tget_1native_1type
(JNIEnv *, jclass, jlong, jint);
/*
generated by cgit v0.12 at 2024-07-17 11:35:11 (GMT)