diff options
Diffstat (limited to 'java/src/jni')
| -rw-r--r-- | java/src/jni/CMakeLists.txt | 6 | ||||
| -rw-r--r-- | java/src/jni/Makefile.am | 2 | ||||
| -rw-r--r-- | java/src/jni/h5Constants.c | 43 | ||||
| -rw-r--r-- | java/src/jni/h5fImp.c | 29 | ||||
| -rw-r--r-- | java/src/jni/h5fImp.h | 9 | ||||
| -rw-r--r-- | java/src/jni/h5vlImp.c | 206 | ||||
| -rw-r--r-- | java/src/jni/h5vlImp.h | 91 |
7 files changed, 380 insertions, 6 deletions
diff --git a/java/src/jni/CMakeLists.txt b/java/src/jni/CMakeLists.txt index 7b95e0b..00c2b34 100644 --- a/java/src/jni/CMakeLists.txt +++ b/java/src/jni/CMakeLists.txt @@ -19,6 +19,7 @@ set (HDF5_JAVA_JNI_CSRCS ${HDF5_JAVA_JNI_SOURCE_DIR}/h5sImp.c ${HDF5_JAVA_JNI_SOURCE_DIR}/h5tImp.c ${HDF5_JAVA_JNI_SOURCE_DIR}/h5util.c + ${HDF5_JAVA_JNI_SOURCE_DIR}/h5vlImp.c ${HDF5_JAVA_JNI_SOURCE_DIR}/h5zImp.c ${HDF5_JAVA_JNI_SOURCE_DIR}/nativeData.c ) @@ -40,6 +41,7 @@ set (HDF5_JAVA_JNI_CHDRS ${HDF5_JAVA_JNI_SOURCE_DIR}/h5sImp.h ${HDF5_JAVA_JNI_SOURCE_DIR}/h5tImp.h ${HDF5_JAVA_JNI_SOURCE_DIR}/h5util.h + ${HDF5_JAVA_JNI_SOURCE_DIR}/h5vlImp.h ${HDF5_JAVA_JNI_SOURCE_DIR}/h5zImp.h ${HDF5_JAVA_JNI_SOURCE_DIR}/nativeData.h ) @@ -48,7 +50,9 @@ set (CMAKE_INCLUDE_CURRENT_DIR_IN_INTERFACE ON) ########### JNI libraries always must be built shared ############### add_library (${HDF5_JAVA_JNI_LIB_TARGET} SHARED ${HDF5_JAVA_JNI_CSRCS} ${HDF5_JAVA_JNI_CHDRS}) -target_include_directories(${HDF5_JAVA_JNI_LIB_TARGET} PRIVATE ${HDF5_BINARY_DIR} ${HDF5_JAVA_JNI_SOURCE_DIR}) +target_include_directories(${HDF5_JAVA_JNI_LIB_TARGET} + PRIVATE "${HDF5_BINARY_DIR};${HDF5_JAVA_JNI_SOURCE_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>" +) TARGET_C_PROPERTIES (${HDF5_JAVA_JNI_LIB_TARGET} SHARED) target_link_libraries (${HDF5_JAVA_JNI_LIB_TARGET} PUBLIC ${HDF5_LIBSH_TARGET}) set_target_properties (${HDF5_JAVA_JNI_LIB_TARGET} PROPERTIES FOLDER libraries/jni) diff --git a/java/src/jni/Makefile.am b/java/src/jni/Makefile.am index 6ded371..370b08b 100644 --- a/java/src/jni/Makefile.am +++ b/java/src/jni/Makefile.am @@ -34,7 +34,7 @@ libhdf5_java_la_LDFLAGS = -avoid-version -shared -export-dynamic -version-info $ # Source files for the library libhdf5_java_la_SOURCES=exceptionImp.c h5Constants.c nativeData.c h5util.c h5Imp.c \ h5aImp.c h5dImp.c h5eImp.c h5fImp.c h5gImp.c h5iImp.c h5lImp.c h5oImp.c \ - h5pImp.c h5plImp.c h5rImp.c h5sImp.c h5tImp.c h5zImp.c + h5pImp.c h5plImp.c h5rImp.c h5sImp.c h5tImp.c h5vlImp.c h5zImp.c # HDF5 Java (JNI) library depends on HDF5 Library. libhdf5_java_la_LIBADD=$(LIBHDF5) diff --git a/java/src/jni/h5Constants.c b/java/src/jni/h5Constants.c index fdec61a..e88fa55 100644 --- a/java/src/jni/h5Constants.c +++ b/java/src/jni/h5Constants.c @@ -21,8 +21,10 @@ extern "C" { #endif /* __cplusplus */ -#include <jni.h> #include "hdf5.h" +#include <jni.h> +#include <stdlib.h> +#include "h5jni.h" #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wmissing-prototypes" @@ -352,6 +354,15 @@ Java_hdf_hdf5lib_HDF5Constants_H5E_1WALK_1UPWARD(JNIEnv *env, jclass cls) { retu JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_HDF5Constants_H5E_1WRITEERROR(JNIEnv *env, jclass cls) { return H5E_WRITEERROR; } +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5ES_1STATUS_1IN_1PROGRESS(JNIEnv *env, jclass cls) { return H5ES_STATUS_IN_PROGRESS; } +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5ES_1STATUS_1SUCCEED(JNIEnv *env, jclass cls) { return H5ES_STATUS_SUCCEED; } +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5ES_1STATUS_1FAIL(JNIEnv *env, jclass cls) { return H5ES_STATUS_FAIL; } +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5ES_1STATUS_1CANCELED(JNIEnv *env, jclass cls) { return H5ES_STATUS_CANCELED; } + /* Java does not have unsigned native types */ #pragma GCC diagnostic push #pragma GCC diagnostic ignored "-Wsign-conversion" @@ -603,8 +614,6 @@ Java_hdf_hdf5lib_HDF5Constants_H5I_1DATASET(JNIEnv *env, jclass cls) { return H5 JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5I_1ATTR(JNIEnv *env, jclass cls) { return H5I_ATTR; } JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5I_1REFERENCE(JNIEnv *env, jclass cls) { return H5I_REFERENCE; } -JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5I_1VFL(JNIEnv *env, jclass cls) { return H5I_VFL; } JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5I_1VOL(JNIEnv *env, jclass cls) { return H5I_VOL; } @@ -763,8 +772,14 @@ Java_hdf_hdf5lib_HDF5Constants_H5PL_1TYPE_1ERROR(JNIEnv *env, jclass cls) { retu JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5PL_1TYPE_1FILTER(JNIEnv *env, jclass cls) { return H5PL_TYPE_FILTER; } JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5PL_1TYPE_1VOL(JNIEnv *env, jclass cls) { return H5PL_TYPE_VOL; } +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5PL_1TYPE_1NONE(JNIEnv *env, jclass cls) { return H5PL_TYPE_NONE; } +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5PL_1FILTER_1PLUGIN(JNIEnv *env, jclass cls) { return H5PL_FILTER_PLUGIN; } JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5PL_1VOL_1PLUGIN(JNIEnv *env, jclass cls) { return H5PL_VOL_PLUGIN; } +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5PL_1ALL_1PLUGIN(JNIEnv *env, jclass cls) { return H5PL_ALL_PLUGIN; } JNIEXPORT jint JNICALL @@ -1239,6 +1254,28 @@ JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5T_1VL_1T(JNIEnv *env, jclass cls) { return sizeof(hvl_t); } JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5VL_1CAP_1FLAG_1NONE(JNIEnv *env, jclass cls) { return H5VL_CAP_FLAG_NONE; } +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5VL_1CAP_1FLAG_1THREADSAFE(JNIEnv *env, jclass cls) { return H5VL_CAP_FLAG_THREADSAFE; } +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5VL_1NATIVE(JNIEnv *env, jclass cls) { return H5VL_NATIVE; } +JNIEXPORT jobject JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5VL_1NATIVE_1NAME(JNIEnv *env, jclass cls) { return (jstring)ENVPTR->NewStringUTF(ENVPAR H5VL_NATIVE_NAME); } +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5VL_1NATIVE_1VALUE(JNIEnv *env, jclass cls) { return H5VL_NATIVE_VALUE; } +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5VL_1NATIVE_1VERSION(JNIEnv *env, jclass cls) { return H5VL_NATIVE_VERSION; } + +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5_1VOL_1INVALID(JNIEnv *env, jclass cls) { return H5_VOL_INVALID; } +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5_1VOL_1NATIVE(JNIEnv *env, jclass cls) { return H5_VOL_NATIVE; } +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5_1VOL_1RESERVED(JNIEnv *env, jclass cls) { return H5_VOL_RESERVED; } +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5_1VOL_1MAX(JNIEnv *env, jclass cls) { return H5_VOL_MAX; } + +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5Z_1CB_1CONT(JNIEnv *env, jclass cls) { return H5Z_CB_CONT; } JNIEXPORT jint JNICALL Java_hdf_hdf5lib_HDF5Constants_H5Z_1CB_1ERROR(JNIEnv *env, jclass cls) { return H5Z_CB_ERROR; } diff --git a/java/src/jni/h5fImp.c b/java/src/jni/h5fImp.c index 9d68290..248e654 100644 --- a/java/src/jni/h5fImp.c +++ b/java/src/jni/h5fImp.c @@ -168,6 +168,33 @@ Java_hdf_hdf5lib_H5_H5Fis_1hdf5 /* * Class: hdf_hdf5lib_H5 + * Method: H5Fis_accessible + * Signature: (Ljava/lang/String;J)Z + */ +JNIEXPORT jboolean JNICALL +Java_hdf_hdf5lib_H5_H5Fis_1accessible + (JNIEnv *env, jclass clss, jstring name, jlong file_id) +{ + htri_t bval = JNI_FALSE; + const char *fileName; + + PIN_JAVA_STRING(name, fileName); + if (fileName != NULL) { + bval = H5Fis_accessible(fileName, (hid_t)file_id); + + UNPIN_JAVA_STRING(name, fileName); + + if (bval > 0) + bval = JNI_TRUE; + else if (bval < 0) + h5libraryError(env); + } + + return (jboolean)bval; +} /* end Java_hdf_hdf5lib_H5_H5Fis_1accessible */ + +/* + * Class: hdf_hdf5lib_H5 * Method: H5Fget_create_plist * Signature: (J)J */ @@ -177,7 +204,7 @@ Java_hdf_hdf5lib_H5__1H5Fget_1create_1plist { hid_t retVal = -1; - retVal = H5Fget_create_plist((hid_t)file_id ); + retVal = H5Fget_create_plist((hid_t)file_id); if (retVal < 0) h5libraryError(env); diff --git a/java/src/jni/h5fImp.h b/java/src/jni/h5fImp.h index fcfdedf..af0fa1d 100644 --- a/java/src/jni/h5fImp.h +++ b/java/src/jni/h5fImp.h @@ -68,6 +68,15 @@ Java_hdf_hdf5lib_H5_H5Fis_1hdf5 /* * Class: hdf_hdf5lib_H5 + * Method: H5Fis_accessible + * Signature: (Ljava/lang/String;J)Z + */ +JNIEXPORT jboolean JNICALL +Java_hdf_hdf5lib_H5_H5Fis_1ccessible + (JNIEnv*, jclass, jstring, jlong); + +/* + * Class: hdf_hdf5lib_H5 * Method: H5Fget_create_plist * Signature: (J)J */ diff --git a/java/src/jni/h5vlImp.c b/java/src/jni/h5vlImp.c new file mode 100644 index 0000000..89ea703 --- /dev/null +++ b/java/src/jni/h5vlImp.c @@ -0,0 +1,206 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +/* + * For details of the HDF libraries, see the HDF Documentation at: + * http://hdfgroup.org/HDF5/doc/ + * + */ + +#ifdef __cplusplus +extern "C" { +#endif /* __cplusplus */ + +#include "hdf5.h" +#include <jni.h> +#include <stdlib.h> +#include "h5jni.h" +#include "h5vlImp.h" + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5VLregister_connector_by_name + * Signature: (Ljava/lang/String;J)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1name + (JNIEnv *env, jclass clss, jobject connector_name, jlong vipl_id) +{ + hid_t status = -1; + const char *vlName; + + PIN_JAVA_STRING(connector_name, vlName); + if (vlName != NULL) { + status = H5VLregister_connector_by_name(vlName, (hid_t)vipl_id); + + UNPIN_JAVA_STRING(connector_name, vlName); + + if (status < 0) + h5libraryError(env); + } + + return (jlong)status; +} /* end Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1name */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5VLregister_connector_by_value + * Signature: (IJ)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1value + (JNIEnv *env, jclass clss, jint connector_value, jlong vipl_id) +{ + hid_t status = H5VLregister_connector_by_value((H5VL_class_value_t)connector_value, (hid_t)vipl_id); + + if (status < 0) + h5libraryError(env); + + return (jlong)status; +} /* end Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1value */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5VLis_connector_registered + * Signature: (Ljava/lang/String;)Z + */ +JNIEXPORT jboolean JNICALL +Java_hdf_hdf5lib_H5_H5VLis_1connector_1registered + (JNIEnv *env, jclass clss, jobject connector_name) +{ + htri_t bval = JNI_FALSE; + const char *vlName; + + PIN_JAVA_STRING(connector_name, vlName); + if (vlName != NULL) { + bval = H5VLis_connector_registered(vlName); + + UNPIN_JAVA_STRING(connector_name, vlName); + + if (bval > 0) + bval = JNI_TRUE; + else if (bval < 0) + h5libraryError(env); + } + + return (jboolean)bval; +} /* end Java_hdf_hdf5lib_H5_H5VLis_1connector_1registered */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5VLget_connector_id + * Signature: (Ljava/lang/String;)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5VLget_1connector_1id + (JNIEnv *env, jclass clss, jobject connector_name) +{ + hid_t status = -1; + const char *vlName; + + PIN_JAVA_STRING(connector_name, vlName); + if (vlName != NULL) { + status = H5VLget_connector_id(vlName); + + UNPIN_JAVA_STRING(connector_name, vlName); + + if (status < 0) + h5libraryError(env); + } + + return (jlong)status; +} /* end Java_hdf_hdf5lib_H5_H5VLget_1connector_1id */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5VLget_connector_name + * Signature: (J)Ljava/lang/String; + */ + +JNIEXPORT jobject JNICALL +Java_hdf_hdf5lib_H5_H5VLget_1connector_1name + (JNIEnv *env, jclass clss, jlong object_id) +{ + char *vlName; + ssize_t buf_size; + ssize_t status; + jstring str = NULL; + + /* get the length of the comment */ + buf_size = H5VLget_connector_name((hid_t)object_id, NULL, 0); + if (buf_size < 0) { + H5Eprint2(H5E_DEFAULT, NULL); + + h5badArgument(env, "H5VLget_connector_name: buf_size < 0"); + } /* end if */ + else if (buf_size > 0) { + buf_size++; /* add extra space for the null terminator */ + vlName = (char *)HDmalloc(sizeof(char) * (size_t)buf_size); + if (vlName == NULL) { + /* exception -- out of memory */ + h5outOfMemory(env, "H5VLget_connector_name: malloc failed"); + } /* end if */ + else { + status = H5VLget_connector_name((hid_t)object_id, vlName, (size_t)buf_size); + + if (status < 0) { + h5libraryError(env); + } /* end if */ + else { + /* may throw OutOfMemoryError */ + str = ENVPTR->NewStringUTF(ENVPAR vlName); + if (str == NULL) { + h5JNIFatalError(env, "H5VLget_connector_name: return string not allocated"); + } /* end if */ + } /* end else */ + HDfree(vlName); + } + } /* end else if */ + + return (jstring)str; +} /* end Java_hdf_hdf5lib_H5_H5VLget_1connector_1name */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5VLclose + * Signature: (J)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5VLclose + (JNIEnv *env, jclass clss, jlong connector_id) +{ + herr_t retValue = H5VLclose((hid_t)connector_id); + + if (retValue < 0) + h5libraryError(env); +} /* end Java_hdf_hdf5lib_H5_H5VLclose */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5VLunregister_connector + * Signature: (J)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5VLunregister_1connector + (JNIEnv *env, jclass clss, jlong connector_id) +{ + herr_t retValue = H5VLunregister_connector((hid_t)connector_id); + + if (retValue < 0) + h5libraryError(env); +} /* end Java_hdf_hdf5lib_H5_H5VLunregister_1connector */ + + +#ifdef __cplusplus +} /* end extern "C" */ +#endif /* __cplusplus */ diff --git a/java/src/jni/h5vlImp.h b/java/src/jni/h5vlImp.h new file mode 100644 index 0000000..af824a9 --- /dev/null +++ b/java/src/jni/h5vlImp.h @@ -0,0 +1,91 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +#include <jni.h> +/* Header for class hdf_hdf5lib_H5_H5VL */ + +#ifndef _Included_hdf_hdf5lib_H5_H5VL +#define _Included_hdf_hdf5lib_H5_H5VL + +#ifdef __cplusplus +extern "C" { +#endif /* __cplusplus */ +/* + * Class: hdf_hdf5lib_H5 + * Method: H5VLregister_connector_by_name + * Signature: (Ljava/lang/String;J)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1name + (JNIEnv *, jclass, jobject, jlong); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5VLregister_connector_by_value + * Signature: (IJ)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1value + (JNIEnv *, jclass, jint, jlong); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5VLis_connector_registered + * Signature: (Ljava/lang/String;)Z + */ +JNIEXPORT jboolean JNICALL +Java_hdf_hdf5lib_H5_H5VLis_connector_registered + (JNIEnv *, jclass, jobject); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5VLget_connector_id + * Signature: (Ljava/lang/String;)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5VLget_1connector_1id + (JNIEnv *, jclass, jobject); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5VLget_connector_name + * Signature: (J)Ljava/lang/String; + */ + +JNIEXPORT jobject JNICALL +Java_hdf_hdf5lib_H5_H5VLget_1connector_1name + (JNIEnv *, jclass, jlong); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5VLclose + * Signature: (J)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5VLclose + (JNIEnv *, jclass, jlong); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5VLunregister_connector + * Signature: (J)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5VLunregister_1connector + (JNIEnv *, jclass, jlong); + +#ifdef __cplusplus +} /* end extern "C" */ +#endif /* __cplusplus */ + +#endif /* _Included_hdf_hdf5lib_H5_H5VL */ |