diff options
Diffstat (limited to 'java/src/jni')
56 files changed, 401 insertions, 420 deletions
diff --git a/java/src/jni/Makefile.am b/java/src/jni/Makefile.am index 96973d4..bf086d2 100644 --- a/java/src/jni/Makefile.am +++ b/java/src/jni/Makefile.am @@ -1,6 +1,5 @@ # # Copyright by The HDF Group. -# Copyright by the Board of Trustees of the University of Illinois. # All rights reserved. # # This file is part of HDF5. The full HDF5 copyright notice, including diff --git a/java/src/jni/exceptionImp.h b/java/src/jni/exceptionImp.h index 4b81605..72edf4c 100644 --- a/java/src/jni/exceptionImp.h +++ b/java/src/jni/exceptionImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5Constants.c b/java/src/jni/h5Constants.c index 06fc606..ee1448b 100644 --- a/java/src/jni/h5Constants.c +++ b/java/src/jni/h5Constants.c @@ -1403,7 +1403,7 @@ Java_hdf_hdf5lib_HDF5Constants_H5FD_1DIRECT(JNIEnv *env, jclass cls) #ifdef H5_HAVE_DIRECT return H5FD_DIRECT; #else - return -1; + return H5I_INVALID_HID; #endif } JNIEXPORT jlong JNICALL @@ -1417,7 +1417,7 @@ Java_hdf_hdf5lib_HDF5Constants_H5FD_1HDFS(JNIEnv *env, jclass cls) #ifdef H5_HAVE_LIBHDFS return H5FD_HDFS; #else - return -1; + return H5I_INVALID_HID; #endif } JNIEXPORT jlong JNICALL @@ -1446,7 +1446,7 @@ Java_hdf_hdf5lib_HDF5Constants_H5FD_1ROS3(JNIEnv *env, jclass cls) #ifdef H5_HAVE_ROS3_VFD return H5FD_ROS3; #else - return -1; + return H5I_INVALID_HID; #endif } JNIEXPORT jlong JNICALL @@ -1460,7 +1460,7 @@ Java_hdf_hdf5lib_HDF5Constants_H5FD_1WINDOWS(JNIEnv *env, jclass cls) #ifdef H5_HAVE_WINDOWS return H5FD_DIRECT; #else - return -1; + return H5I_INVALID_HID; #endif } JNIEXPORT jint JNICALL diff --git a/java/src/jni/h5Imp.h b/java/src/jni/h5Imp.h index 226a2fe..776f295 100644 --- a/java/src/jni/h5Imp.h +++ b/java/src/jni/h5Imp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5aImp.c b/java/src/jni/h5aImp.c index c365144..6bf86d0 100644 --- a/java/src/jni/h5aImp.c +++ b/java/src/jni/h5aImp.c @@ -1133,7 +1133,7 @@ H5AreadVL_asstr(JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf) for (i = 0; i < (size_t)n; i++) { h5str.s[0] = '\0'; - if (!h5str_sprintf(ENVONLY, &h5str, aid, tid, &(((char *)readBuf)[i * typeSize]), typeSize, 0)) + if (!h5str_sprintf(ENVONLY, &h5str, aid, tid, &(((char *)readBuf)[i * typeSize]), 0)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s))) @@ -1425,7 +1425,7 @@ Java_hdf_hdf5lib_H5_H5Aread_1reg_1ref(JNIEnv *env, jclass clss, jlong attr_id, j for (i = 0; i < n; i++) { h5str.s[0] = '\0'; - if (!h5str_sprintf(ENVONLY, &h5str, (hid_t)attr_id, (hid_t)mem_type_id, (void *)&ref_data[i], 0, 0)) + if (!h5str_sprintf(ENVONLY, &h5str, (hid_t)attr_id, (hid_t)mem_type_id, (void *)&ref_data[i], 0)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s))) diff --git a/java/src/jni/h5aImp.h b/java/src/jni/h5aImp.h index 7615946..3d9a230 100644 --- a/java/src/jni/h5aImp.h +++ b/java/src/jni/h5aImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5dImp.c b/java/src/jni/h5dImp.c index f8f2325..73b252a 100644 --- a/java/src/jni/h5dImp.c +++ b/java/src/jni/h5dImp.c @@ -1290,7 +1290,7 @@ H5DreadVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid for (i = 0; i < (size_t)n; i++) { h5str.s[0] = '\0'; - if (!h5str_sprintf(ENVONLY, &h5str, did, tid, &(((char *)readBuf)[i * typeSize]), typeSize, 0)) + if (!h5str_sprintf(ENVONLY, &h5str, did, tid, &(((char *)readBuf)[i * typeSize]), 0)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s))) @@ -1669,8 +1669,7 @@ Java_hdf_hdf5lib_H5_H5Dread_1reg_1ref(JNIEnv *env, jclass clss, jlong dataset_id for (i = 0; i < n; i++) { h5str.s[0] = '\0'; - if (!h5str_sprintf(ENVONLY, &h5str, (hid_t)dataset_id, (hid_t)mem_type_id, (void *)&ref_data[i], 0, - 0)) + if (!h5str_sprintf(ENVONLY, &h5str, (hid_t)dataset_id, (hid_t)mem_type_id, (void *)&ref_data[i], 0)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s))) diff --git a/java/src/jni/h5dImp.h b/java/src/jni/h5dImp.h index c1ed065..61dfeaa 100644 --- a/java/src/jni/h5dImp.h +++ b/java/src/jni/h5dImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5eImp.c b/java/src/jni/h5eImp.c index 7d7a2cf..5bdeae8 100644 --- a/java/src/jni/h5eImp.c +++ b/java/src/jni/h5eImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5eImp.h b/java/src/jni/h5eImp.h index d849b92..3133ca9 100644 --- a/java/src/jni/h5eImp.h +++ b/java/src/jni/h5eImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5fImp.h b/java/src/jni/h5fImp.h index ed90ee9..d7e3ded 100644 --- a/java/src/jni/h5fImp.h +++ b/java/src/jni/h5fImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5gImp.h b/java/src/jni/h5gImp.h index 393d5d8..4b0cb4d 100644 --- a/java/src/jni/h5gImp.h +++ b/java/src/jni/h5gImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5iImp.h b/java/src/jni/h5iImp.h index eff5048..ed54303 100644 --- a/java/src/jni/h5iImp.h +++ b/java/src/jni/h5iImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5jni.h b/java/src/jni/h5jni.h index fb6f22a..aab5479 100644 --- a/java/src/jni/h5jni.h +++ b/java/src/jni/h5jni.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5lImp.c b/java/src/jni/h5lImp.c index fabd920..43db4e9 100644 --- a/java/src/jni/h5lImp.c +++ b/java/src/jni/h5lImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5lImp.h b/java/src/jni/h5lImp.h index 2e949fe..134ed17 100644 --- a/java/src/jni/h5lImp.h +++ b/java/src/jni/h5lImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5oImp.c b/java/src/jni/h5oImp.c index e06ad79..3037bc6 100644 --- a/java/src/jni/h5oImp.c +++ b/java/src/jni/h5oImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5oImp.h b/java/src/jni/h5oImp.h index e6675be..2abb0d9 100644 --- a/java/src/jni/h5oImp.h +++ b/java/src/jni/h5oImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pACPLImp.c b/java/src/jni/h5pACPLImp.c index 611016f..6290e0e 100644 --- a/java/src/jni/h5pACPLImp.c +++ b/java/src/jni/h5pACPLImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pACPLImp.h b/java/src/jni/h5pACPLImp.h index 21c0cc6..8d9bf7d 100644 --- a/java/src/jni/h5pACPLImp.h +++ b/java/src/jni/h5pACPLImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pDAPLImp.c b/java/src/jni/h5pDAPLImp.c index 430fc79..82802b9 100644 --- a/java/src/jni/h5pDAPLImp.c +++ b/java/src/jni/h5pDAPLImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pDAPLImp.h b/java/src/jni/h5pDAPLImp.h index a15e964..353f652 100644 --- a/java/src/jni/h5pDAPLImp.h +++ b/java/src/jni/h5pDAPLImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pDCPLImp.c b/java/src/jni/h5pDCPLImp.c index 9e8b2b6..760a5a8 100644 --- a/java/src/jni/h5pDCPLImp.c +++ b/java/src/jni/h5pDCPLImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pDCPLImp.h b/java/src/jni/h5pDCPLImp.h index 6adcbe4..302019f 100644 --- a/java/src/jni/h5pDCPLImp.h +++ b/java/src/jni/h5pDCPLImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pDXPLImp.c b/java/src/jni/h5pDXPLImp.c index 8b930dc..c555d53 100644 --- a/java/src/jni/h5pDXPLImp.c +++ b/java/src/jni/h5pDXPLImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pDXPLImp.h b/java/src/jni/h5pDXPLImp.h index 8d2df68..250c3f8 100644 --- a/java/src/jni/h5pDXPLImp.h +++ b/java/src/jni/h5pDXPLImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pFAPLImp.c b/java/src/jni/h5pFAPLImp.c index 23c84c4..ad85aae 100644 --- a/java/src/jni/h5pFAPLImp.c +++ b/java/src/jni/h5pFAPLImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pFAPLImp.h b/java/src/jni/h5pFAPLImp.h index 166834f..4bb48e2 100644 --- a/java/src/jni/h5pFAPLImp.h +++ b/java/src/jni/h5pFAPLImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pFCPLImp.c b/java/src/jni/h5pFCPLImp.c index fe12760..ded3248 100644 --- a/java/src/jni/h5pFCPLImp.c +++ b/java/src/jni/h5pFCPLImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pFCPLImp.h b/java/src/jni/h5pFCPLImp.h index 7799e49..0fe3944 100644 --- a/java/src/jni/h5pFCPLImp.h +++ b/java/src/jni/h5pFCPLImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pGAPLImp.c b/java/src/jni/h5pGAPLImp.c index c43609d..b92e180 100644 --- a/java/src/jni/h5pGAPLImp.c +++ b/java/src/jni/h5pGAPLImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pGAPLImp.h b/java/src/jni/h5pGAPLImp.h index db95f5d..478402a 100644 --- a/java/src/jni/h5pGAPLImp.h +++ b/java/src/jni/h5pGAPLImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pGCPLImp.c b/java/src/jni/h5pGCPLImp.c index 46d102f..2ba140d 100644 --- a/java/src/jni/h5pGCPLImp.c +++ b/java/src/jni/h5pGCPLImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pGCPLImp.h b/java/src/jni/h5pGCPLImp.h index a1b8b28..6a40908 100644 --- a/java/src/jni/h5pGCPLImp.h +++ b/java/src/jni/h5pGCPLImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pImp.h b/java/src/jni/h5pImp.h index 49d36a6..b80ce46 100644 --- a/java/src/jni/h5pImp.h +++ b/java/src/jni/h5pImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pLAPLImp.c b/java/src/jni/h5pLAPLImp.c index 8b5afa2..1db495c 100644 --- a/java/src/jni/h5pLAPLImp.c +++ b/java/src/jni/h5pLAPLImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pLAPLImp.h b/java/src/jni/h5pLAPLImp.h index 204901d..46adc0c 100644 --- a/java/src/jni/h5pLAPLImp.h +++ b/java/src/jni/h5pLAPLImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pLCPLImp.c b/java/src/jni/h5pLCPLImp.c index 455936b..b5eebd1 100644 --- a/java/src/jni/h5pLCPLImp.c +++ b/java/src/jni/h5pLCPLImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pLCPLImp.h b/java/src/jni/h5pLCPLImp.h index b744815..7601adb 100644 --- a/java/src/jni/h5pLCPLImp.h +++ b/java/src/jni/h5pLCPLImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pOCPLImp.c b/java/src/jni/h5pOCPLImp.c index 6cf62d7..bdcba46 100644 --- a/java/src/jni/h5pOCPLImp.c +++ b/java/src/jni/h5pOCPLImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pOCPLImp.h b/java/src/jni/h5pOCPLImp.h index ccc4c78..c16f1be 100644 --- a/java/src/jni/h5pOCPLImp.h +++ b/java/src/jni/h5pOCPLImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pOCpyPLImp.c b/java/src/jni/h5pOCpyPLImp.c index 9cf18fd..b525b68 100644 --- a/java/src/jni/h5pOCpyPLImp.c +++ b/java/src/jni/h5pOCpyPLImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pOCpyPLImp.h b/java/src/jni/h5pOCpyPLImp.h index 82369b3..d8682cb 100644 --- a/java/src/jni/h5pOCpyPLImp.h +++ b/java/src/jni/h5pOCpyPLImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pStrCPLImp.c b/java/src/jni/h5pStrCPLImp.c index 33dbdd7..a056e3a 100644 --- a/java/src/jni/h5pStrCPLImp.c +++ b/java/src/jni/h5pStrCPLImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5pStrCPLImp.h b/java/src/jni/h5pStrCPLImp.h index 01cde89..8a56494 100644 --- a/java/src/jni/h5pStrCPLImp.h +++ b/java/src/jni/h5pStrCPLImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5plImp.c b/java/src/jni/h5plImp.c index bef1242..9193028 100644 --- a/java/src/jni/h5plImp.c +++ b/java/src/jni/h5plImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5plImp.h b/java/src/jni/h5plImp.h index 228d512..b809efa 100644 --- a/java/src/jni/h5plImp.h +++ b/java/src/jni/h5plImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5rImp.h b/java/src/jni/h5rImp.h index 94e7911..582b837 100644 --- a/java/src/jni/h5rImp.h +++ b/java/src/jni/h5rImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5sImp.h b/java/src/jni/h5sImp.h index c4a1828..1ceaf3f 100644 --- a/java/src/jni/h5sImp.h +++ b/java/src/jni/h5sImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5tImp.h b/java/src/jni/h5tImp.h index 3769cf3..3faeb00 100644 --- a/java/src/jni/h5tImp.h +++ b/java/src/jni/h5tImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5util.c b/java/src/jni/h5util.c index 5b38daf..3e1962e 100644 --- a/java/src/jni/h5util.c +++ b/java/src/jni/h5util.c @@ -28,8 +28,6 @@ extern "C" { #include "hdf5.h" #include "h5util.h" -#define SKIP_UNUSED_DUMP_ROUTINES - /* size of hyperslab buffer when a dataset is bigger than H5TOOLS_MALLOCSIZE */ hsize_t H5TOOLS_BUFSIZE = (32 * 1024 * 1024); /* 32 MB */ int H5TOOLS_TEXT_BLOCK = 16; /* Number of elements on a line in a text export file */ @@ -54,18 +52,19 @@ void * edata; /* Local Prototypes */ /********************/ -#ifndef SKIP_UNUSED_DUMP_ROUTINES -static int h5str_dump_region_blocks(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj); -static int h5str_dump_region_points(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj); -#endif +static int h5str_dump_region_blocks(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj, + int expand_data); +static int h5str_dump_region_points(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj, + int expand_data); +static int h5str_dump_region_attribute(JNIEnv *env, h5str_t *str, hid_t region_id); static int h5str_is_zero(const void *_mem, size_t size); static hid_t h5str_get_native_type(hid_t type); static hid_t h5str_get_little_endian_type(hid_t type); static hid_t h5str_get_big_endian_type(hid_t type); static htri_t h5str_detect_vlen(hid_t tid); static htri_t h5str_detect_vlen_str(hid_t tid); -static int h5tools_dump_simple_data(JNIEnv *env, FILE *stream, hid_t container, hid_t type, void *_mem, - hsize_t nelmts); +static int h5str_dump_simple_data(JNIEnv *env, FILE *stream, hid_t container, hid_t type, void *_mem, + hsize_t nelmts); static int h5str_render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t block_nelmts); static int render_bin_output_region_data_blocks(FILE *stream, hid_t region_id, hid_t container, int ndims, @@ -185,13 +184,14 @@ h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_ H5T_class_t tclass = H5T_NO_CLASS; const char delimiter[] = " ," H5_COMPOUND_BEGIN_INDICATOR H5_COMPOUND_END_INDICATOR H5_ARRAY_BEGIN_INDICATOR H5_ARRAY_END_INDICATOR H5_VLEN_BEGIN_INDICATOR H5_VLEN_END_INDICATOR; - size_t typeSize = 0; - hid_t mtid = H5I_INVALID_HID; - char * this_str = NULL; - char * token; - char * cptr = NULL; - int n; - size_t retVal = 0; + + size_t retVal = 0; + size_t typeSize = 0; + hid_t mtid = H5I_INVALID_HID; + char * this_str = NULL; + char * cptr = NULL; + char * token; + int n; if (!in_str) H5_NULL_ARGUMENT_ERROR(ENVONLY, "h5str_convert: in_str is NULL"); @@ -239,7 +239,7 @@ h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_ case sizeof(long double): { long double tmp_ldouble = 0.0; - sscanf(token, "%Lf", &tmp_ldouble); + sscanf(token, "%Lg", &tmp_ldouble); HDmemcpy(cptr, &tmp_ldouble, sizeof(long double)); break; } @@ -644,27 +644,27 @@ done: * * Purpose: Object reference -- show the name of the referenced object. * - * Return: Nothing + * Return: SUCCEED or FAIL *------------------------------------------------------------------------- */ -void -h5str_sprint_reference(JNIEnv *env, h5str_t *out_str, hid_t container, void *ref_p) +int +h5str_sprint_reference(JNIEnv *env, h5str_t *out_str, void *ref_p) { - ssize_t buf_size; - char * ref_name = NULL; - const H5R_ref_t *ref_vp = (H5R_ref_t *)ref_p; + ssize_t buf_size; + char * ref_name = NULL; + H5R_ref_t *ref_vp = (H5R_ref_t *)ref_p; - UNUSED(container); + int ret_value = FAIL; if (!h5str_append(out_str, " \"")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_LIBRARY_ERROR(ENVONLY); buf_size = H5Rget_file_name(ref_vp, NULL, 0); if (buf_size) { ref_name = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1); if (H5Rget_file_name(ref_vp, ref_name, buf_size + 1) >= 0) { ref_name[buf_size] = '\0'; if (!h5str_append(out_str, ref_name)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_LIBRARY_ERROR(ENVONLY); } HDfree(ref_name); ref_name = NULL; @@ -676,7 +676,7 @@ h5str_sprint_reference(JNIEnv *env, h5str_t *out_str, hid_t container, void *ref if (H5Rget_obj_name(ref_vp, H5P_DEFAULT, ref_name, buf_size + 1) >= 0) { ref_name[buf_size] = '\0'; if (!h5str_append(out_str, ref_name)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_LIBRARY_ERROR(ENVONLY); } HDfree(ref_name); ref_name = NULL; @@ -689,17 +689,61 @@ h5str_sprint_reference(JNIEnv *env, h5str_t *out_str, hid_t container, void *ref if (H5Rget_attr_name(ref_vp, ref_name, buf_size + 1) >= 0) { ref_name[buf_size] = '\0'; if (!h5str_append(out_str, ref_name)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_LIBRARY_ERROR(ENVONLY); } HDfree(ref_name); ref_name = NULL; } } if (!h5str_append(out_str, "\"")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_LIBRARY_ERROR(ENVONLY); + + ret_value = SUCCEED; done: if (ref_name) HDfree(ref_name); + + return ret_value; +} /* h5str_sprint_reference */ + +int +h5str_region_dataset(JNIEnv *env, h5str_t *out_str, H5R_ref_t *ref_vp, int expand_data) +{ + hid_t new_obj_id = H5I_INVALID_HID; + hid_t new_obj_sid = H5I_INVALID_HID; + H5S_sel_type region_type; + + int ret_value = FAIL; + + if ((new_obj_id = H5Ropen_object(ref_vp, H5P_DEFAULT, H5P_DEFAULT)) < 0) { + ret_value = SUCCEED; /* An uncreated region is a valid state */ + goto done; + } + + if ((new_obj_sid = H5Ropen_region(ref_vp, H5P_DEFAULT, H5P_DEFAULT)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + if ((region_type = H5Sget_select_type(new_obj_sid)) > H5S_SEL_ERROR) { + if (H5S_SEL_POINTS == region_type) { + if (h5str_dump_region_points(ENVONLY, out_str, new_obj_sid, new_obj_id, expand_data) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + } + else if (H5S_SEL_HYPERSLABS == region_type) { + if (h5str_dump_region_blocks(ENVONLY, out_str, new_obj_sid, new_obj_id, expand_data) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + } + } + + ret_value = SUCCEED; +done: + if (new_obj_sid >= 0) + if (H5Sclose(new_obj_sid) < 0) + H5_LIBRARY_ERROR(ENVONLY); + if (new_obj_id >= 0) + if (H5Dclose(new_obj_id) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + return ret_value; } /* @@ -710,8 +754,7 @@ done: * FAILURE: 0 */ size_t -h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *in_buf, size_t in_buf_len, - int expand_data) +h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *in_buf, int expand_data) { unsigned char *ucptr = (unsigned char *)in_buf; static char fmt_llong[8], fmt_ullong[8]; @@ -719,7 +762,6 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i size_t typeSize = 0; H5T_sign_t nsign = H5T_SGN_ERROR; hid_t mtid = H5I_INVALID_HID; - hid_t obj = H5I_INVALID_HID; char * cptr = (char *)in_buf; char * this_str = NULL; int n; @@ -734,8 +776,6 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i H5_LIBRARY_ERROR(ENVONLY); if (!(typeSize = H5Tget_size(tid))) H5_LIBRARY_ERROR(ENVONLY); - if (!(nsign = H5Tget_sign(tid))) - H5_LIBRARY_ERROR(ENVONLY); /* Build default formats for long long types */ if (!fmt_llong[0]) { @@ -744,7 +784,6 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i if (HDsnprintf(fmt_ullong, sizeof(fmt_ullong), "%%%su", H5_PRINTF_LL_WIDTH) < 0) H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure"); } /* end if */ - switch (tclass) { case H5T_FLOAT: { switch (typeSize) { @@ -805,6 +844,8 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i htri_t is_variable; char * tmp_str; + typeSize = 0; + if ((is_variable = H5Tis_variable_str(tid)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1003,7 +1044,7 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i H5_LIBRARY_ERROR(ENVONLY); if (!h5str_append(out_str, H5_COMPOUND_BEGIN_INDICATOR)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_LIBRARY_ERROR(ENVONLY); for (i = 0; i < (unsigned)n; i++) { offset = H5Tget_member_offset(tid, i); @@ -1011,12 +1052,12 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i if ((mtid = H5Tget_member_type(tid, i)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (!h5str_sprintf(ENVONLY, out_str, container, mtid, &cptr[offset], in_buf_len, expand_data)) + if (!h5str_sprintf(ENVONLY, out_str, container, mtid, &cptr[offset], expand_data)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if ((i + 1) < (unsigned)n) if (!h5str_append(out_str, ", ")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_LIBRARY_ERROR(ENVONLY); if (H5Tclose(mtid) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1024,7 +1065,7 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i } if (!h5str_append(out_str, H5_COMPOUND_END_INDICATOR)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_LIBRARY_ERROR(ENVONLY); break; } @@ -1034,7 +1075,7 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i if (H5Tenum_nameof(tid, cptr, enum_name, sizeof enum_name) >= 0) { if (!h5str_append(out_str, enum_name)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_LIBRARY_ERROR(ENVONLY); } else { size_t i; @@ -1057,130 +1098,120 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i } case H5T_REFERENCE: { - if (h5str_is_zero(cptr, typeSize)) { - if (!h5str_append(out_str, "NULL")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - break; - } - if (H5Tequal(tid, H5T_STD_REF)) { - H5O_type_t obj_type = -1; /* Object type */ - H5R_type_t ref_type; /* Reference type */ - const H5R_ref_t *ref_vp = (H5R_ref_t *)cptr; + hid_t new_obj_id = H5I_INVALID_HID; + H5O_type_t obj_type = -1; /* Object type */ + H5R_type_t ref_type; /* Reference type */ + + H5R_ref_t *ref_vp = (H5R_ref_t *)cptr; ref_type = H5Rget_type(ref_vp); - H5Rget_obj_type3(ref_vp, H5P_DEFAULT, &obj_type); switch (ref_type) { - case H5R_OBJECT1: { - /* Object references -- show the type and OID of the referenced object. */ - H5O_info2_t oi; - - if ((obj = H5Ropen_object(ref_vp, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { - H5Oget_info3(obj, &oi, H5O_INFO_BASIC); - if (H5Oclose(obj) < 0) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + case H5R_OBJECT1: + if (H5Rget_obj_type3(ref_vp, H5P_DEFAULT, &obj_type) >= 0) { + switch (obj_type) { + case H5O_TYPE_DATASET: + if (h5str_region_dataset(ENVONLY, out_str, ref_vp, expand_data) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + break; + + case H5O_TYPE_GROUP: + case H5O_TYPE_NAMED_DATATYPE: + case H5O_TYPE_MAP: + case H5O_TYPE_UNKNOWN: + case H5O_TYPE_NTYPES: + default: { + /* Object references -- show the type and OID of the referenced object. */ + H5O_info2_t oi; + char * obj_tok_str = NULL; + if ((new_obj_id = H5Ropen_object(ref_vp, H5P_DEFAULT, H5P_DEFAULT)) >= + 0) { + H5Oget_info3(new_obj_id, &oi, H5O_INFO_BASIC); + H5Otoken_to_str(new_obj_id, &oi.token, &obj_tok_str); + if (H5Dclose(new_obj_id) < 0) + H5_LIBRARY_ERROR(ENVONLY); + } + else + H5_LIBRARY_ERROR(ENVONLY); + + if (NULL == (this_str = (char *)HDmalloc(14))) + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + if (HDsprintf(this_str, "%u-", (unsigned)oi.type) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); + if (!h5str_append(out_str, this_str)) + H5_LIBRARY_ERROR(ENVONLY); + HDfree(this_str); + this_str = NULL; + + /* Print OID */ + { + char *token_str; + + H5Otoken_to_str(tid, &oi.token, &token_str); + + if (NULL == (this_str = (char *)HDmalloc(64 + strlen(token_str) + 1))) + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + if (HDsprintf(this_str, "%lu:%s", oi.fileno, token_str) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); + + H5free_memory(token_str); + } + } break; + } /* end switch */ } else - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - - if (NULL == (this_str = (char *)HDmalloc(14))) - H5_OUT_OF_MEMORY_ERROR(ENVONLY, - "h5str_sprintf: failed to allocate string buffer"); - if (HDsprintf(this_str, "%u-", (unsigned)oi.type) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); - if (!h5str_append(out_str, this_str)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - HDfree(this_str); - this_str = NULL; - - switch (obj_type) { - case H5O_TYPE_GROUP: - if (!h5str_append(out_str, H5_TOOLS_GROUP)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - break; - - case H5O_TYPE_DATASET: - if (!h5str_append(out_str, H5_TOOLS_DATASET)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - break; - - case H5O_TYPE_NAMED_DATATYPE: - if (!h5str_append(out_str, H5_TOOLS_DATATYPE)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - break; - - case H5O_TYPE_MAP: - case H5O_TYPE_UNKNOWN: - case H5O_TYPE_NTYPES: - default: - break; - } /* end switch */ - H5Oclose(obj); - h5str_sprint_reference(ENVONLY, out_str, container, ref_vp); - - /* Print OID */ - { - char *token_str; - - H5Otoken_to_str(tid, &oi.token, &token_str); - - if (NULL == (this_str = (char *)HDmalloc(64 + strlen(token_str) + 1))) - H5_OUT_OF_MEMORY_ERROR(ENVONLY, - "h5str_sprintf: failed to allocate string buffer"); - if (HDsprintf(this_str, "%lu:%s", oi.fileno, token_str) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); - - H5free_memory(token_str); - } - - } - - break; + H5_LIBRARY_ERROR(ENVONLY); + break; case H5R_DATASET_REGION1: - if (!h5str_append(out_str, H5_TOOLS_DATASET)) + if (h5str_region_dataset(ENVONLY, out_str, ref_vp, expand_data) < 0) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - h5str_sprint_reference(ENVONLY, out_str, container, (void *)cptr); break; case H5R_OBJECT2: - switch (obj_type) { - case H5O_TYPE_GROUP: - if (!h5str_append(out_str, H5_TOOLS_GROUP)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - break; - - case H5O_TYPE_DATASET: - if (!h5str_append(out_str, H5_TOOLS_DATASET)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - break; - - case H5O_TYPE_NAMED_DATATYPE: - if (!h5str_append(out_str, H5_TOOLS_DATATYPE)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - break; - - case H5O_TYPE_MAP: - case H5O_TYPE_UNKNOWN: - case H5O_TYPE_NTYPES: - default: - break; - } /* end switch */ - h5str_sprint_reference(ENVONLY, out_str, container, (void *)cptr); + if (H5Rget_obj_type3(ref_vp, H5P_DEFAULT, &obj_type) >= 0) { + switch (obj_type) { + case H5O_TYPE_GROUP: + break; + + case H5O_TYPE_DATASET: + if (h5str_region_dataset(ENVONLY, out_str, ref_vp, expand_data) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + break; + + case H5O_TYPE_NAMED_DATATYPE: + break; + + case H5O_TYPE_MAP: + case H5O_TYPE_UNKNOWN: + case H5O_TYPE_NTYPES: + default: + break; + } /* end switch */ + } + else + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: H5R_OBJECT2 failed"); break; case H5R_DATASET_REGION2: - if (!h5str_append(out_str, H5_TOOLS_DATASET)) + if (h5str_region_dataset(ENVONLY, out_str, ref_vp, expand_data) < 0) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - h5str_sprint_reference(ENVONLY, out_str, container, (void *)cptr); break; case H5R_ATTR: - if (!h5str_append(out_str, H5_TOOLS_ATTRIBUTE)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - h5str_sprint_reference(ENVONLY, out_str, container, (void *)cptr); + if ((new_obj_id = H5Ropen_attr(ref_vp, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + if (h5str_dump_region_attribute(ENVONLY, out_str, new_obj_id) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + if (H5Aclose(new_obj_id) < 0) + H5_LIBRARY_ERROR(ENVONLY); + } break; case H5R_BADTYPE: case H5R_MAXTYPE: default: break; } /* end switch */ + + if (H5Rdestroy(ref_vp) < 0) + H5_LIBRARY_ERROR(ENVONLY); } else if (H5Tequal(tid, H5T_STD_REF_DSETREG)) { /* (H5R_DSET_REG_REF_BUF_SIZE == typeSize) */ @@ -1200,7 +1231,7 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i int rank = 0; if (!h5str_append(out_str, H5_ARRAY_BEGIN_INDICATOR)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_LIBRARY_ERROR(ENVONLY); if ((mtid = H5Tget_super(tid)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1218,17 +1249,16 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i total_elmts *= dims[i]; for (i = 0; i < total_elmts; i++) { - if (!h5str_sprintf(ENVONLY, out_str, container, mtid, &(cptr[i * baseSize]), in_buf_len, - expand_data)) + if (!h5str_sprintf(ENVONLY, out_str, container, mtid, &(cptr[i * baseSize]), expand_data)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if ((i + 1) < total_elmts) if (!h5str_append(out_str, ", ")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_LIBRARY_ERROR(ENVONLY); } if (!h5str_append(out_str, H5_ARRAY_END_INDICATOR)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_LIBRARY_ERROR(ENVONLY); if (H5Tclose(mtid) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1249,20 +1279,20 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i H5_LIBRARY_ERROR(ENVONLY); if (!h5str_append(out_str, H5_VLEN_BEGIN_INDICATOR)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_LIBRARY_ERROR(ENVONLY); for (i = 0; i < (unsigned)vl_buf->len; i++) { if (!h5str_sprintf(ENVONLY, out_str, container, mtid, &(((char *)vl_buf->p)[i * baseSize]), - vl_buf->len, expand_data)) + expand_data)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if ((i + 1) < (unsigned)vl_buf->len) if (!h5str_append(out_str, ", ")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_LIBRARY_ERROR(ENVONLY); } if (!h5str_append(out_str, H5_VLEN_END_INDICATOR)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_LIBRARY_ERROR(ENVONLY); if (H5Tclose(mtid) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1304,7 +1334,7 @@ h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *i if (this_str) { if (!h5str_append(out_str, this_str)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_LIBRARY_ERROR(ENVONLY); HDfree(this_str); this_str = NULL; @@ -1405,12 +1435,12 @@ h5str_print_region_data_blocks(JNIEnv *env, hid_t region_id, h5str_t *str, int n for (numindex = 0; numindex < numelem; numindex++) { if (!h5str_sprintf(ENVONLY, str, region_id, type_id, ((char *)region_buf + numindex * type_size), - 0, 1)) + 1)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (numindex + 1 < numelem) if (!h5str_append(str, ", ")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_LIBRARY_ERROR(ENVONLY); } /* end for (jndx = 0; jndx < numelem; jndx++, region_elmtno++, ctx.cur_elmt++) */ } /* end for (blkndx = 0; blkndx < nblocks; blkndx++) */ @@ -1434,7 +1464,7 @@ done: } /* end h5str_print_region_data_blocks */ int -h5str_dump_region_blocks_data(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_id) +h5str_dump_region_blocks(JNIEnv *env, h5str_t *str, hid_t region_space, hid_t region_id, int expand_data) { hssize_t nblocks; hsize_t alloc_size; @@ -1443,29 +1473,31 @@ h5str_dump_region_blocks_data(JNIEnv *env, h5str_t *str, hid_t region, hid_t reg hid_t type_id = H5I_INVALID_HID; int ndims = -1; int ret_value = FAIL; + int i; + char tmp_str[256]; /* * This function fails if the region does not have blocks. */ - H5E_BEGIN_TRY { nblocks = H5Sget_select_hyper_nblocks(region); } + H5E_BEGIN_TRY { nblocks = H5Sget_select_hyper_nblocks(region_space); } H5E_END_TRY; - if (nblocks < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if ((ndims = H5Sget_simple_extent_ndims(region)) < 0) + if (nblocks <= 0) { + ret_value = SUCCEED; + goto done; + } + if ((ndims = H5Sget_simple_extent_ndims(region_space)) < 0) H5_LIBRARY_ERROR(ENVONLY); /* Print block information */ alloc_size = (hsize_t)nblocks * (hsize_t)ndims * 2 * (hsize_t)sizeof(ptdata[0]); - if (alloc_size == (hsize_t)((size_t)alloc_size)) { - if (NULL == (ptdata = (hsize_t *)HDmalloc((size_t)alloc_size))) - H5_OUT_OF_MEMORY_ERROR(ENVONLY, - "h5str_dump_region_blocks_data: failed to allocate region block buffer"); + if (NULL == (ptdata = (hsize_t *)HDmalloc((size_t)alloc_size))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_region_blocks: failed to allocate region block buffer"); - if (H5Sget_select_hyper_blocklist(region, (hsize_t)0, (hsize_t)nblocks, ptdata) < 0) - H5_LIBRARY_ERROR(ENVONLY); + if (H5Sget_select_hyper_blocklist(region_space, (hsize_t)0, (hsize_t)nblocks, ptdata) < 0) + H5_LIBRARY_ERROR(ENVONLY); + if (expand_data) { if ((dtype = H5Dget_type(region_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1474,66 +1506,19 @@ h5str_dump_region_blocks_data(JNIEnv *env, h5str_t *str, hid_t region, hid_t reg if (h5str_print_region_data_blocks(ENVONLY, region_id, str, ndims, type_id, nblocks, ptdata) < 0) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } /* if (alloc_size == (hsize_t)((size_t)alloc_size)) */ - - ret_value = SUCCEED; - -done: - if (type_id >= 0) - H5Tclose(type_id); - if (dtype >= 0) - H5Tclose(dtype); - if (ptdata) - HDfree(ptdata); - - return ret_value; -} /* end h5str_dump_region_blocks_data */ - -#ifndef SKIP_UNUSED_DUMP_ROUTINES -static int -h5str_dump_region_blocks(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_id) -{ - hssize_t nblocks; - hsize_t alloc_size; - hsize_t *ptdata = NULL; - char tmp_str[256]; - int ndims = -1; - int ret_value = FAIL; - - UNUSED(region_id); - - /* - * This function fails if the region does not have blocks. - */ - H5E_BEGIN_TRY { nblocks = H5Sget_select_hyper_nblocks(region); } - H5E_END_TRY; - - if (nblocks < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if ((ndims = H5Sget_simple_extent_ndims(region)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - /* Print block information */ - alloc_size = (hsize_t)nblocks * (hsize_t)ndims * 2 * (hsize_t)sizeof(ptdata[0]); - if (alloc_size == (hsize_t)((size_t)alloc_size)) { - int i; - - if (NULL == (ptdata = (hsize_t *)HDmalloc((size_t)alloc_size))) - H5_OUT_OF_MEMORY_ERROR(ENVONLY, - "h5str_dump_region_blocks: failed to allocate region block buffer"); - - if (H5Sget_select_hyper_blocklist(region, (hsize_t)0, (hsize_t)nblocks, ptdata) < 0) + } + else { + if (!h5str_append(str, " REGION_TYPE BLOCK")) H5_LIBRARY_ERROR(ENVONLY); if (!h5str_append(str, " {")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_LIBRARY_ERROR(ENVONLY); for (i = 0; i < nblocks; i++) { int j; if (!h5str_append(str, " ")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_LIBRARY_ERROR(ENVONLY); /* Start coordinates and opposite corner */ for (j = 0; j < ndims; j++) { @@ -1543,7 +1528,7 @@ h5str_dump_region_blocks(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_i H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_blocks: HDsprintf failure"); if (!h5str_append(str, tmp_str)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_LIBRARY_ERROR(ENVONLY); } for (j = 0; j < ndims; j++) { @@ -1554,28 +1539,30 @@ h5str_dump_region_blocks(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_i H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_blocks: HDsprintf failure"); if (!h5str_append(str, tmp_str)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_LIBRARY_ERROR(ENVONLY); } if (!h5str_append(str, ") ")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_LIBRARY_ERROR(ENVONLY); tmp_str[0] = '\0'; } if (!h5str_append(str, " }")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } /* if (alloc_size == (hsize_t)((size_t)alloc_size)) */ - + H5_LIBRARY_ERROR(ENVONLY); + } ret_value = SUCCEED; done: + if (type_id >= 0) + H5Tclose(type_id); + if (dtype >= 0) + H5Tclose(dtype); if (ptdata) HDfree(ptdata); return ret_value; } /* end h5str_dump_region_blocks */ -#endif /*------------------------------------------------------------------------- * Purpose: Print the data values from a dataset referenced by region points. @@ -1628,12 +1615,12 @@ h5str_print_region_data_points(JNIEnv *env, hid_t region_space, hid_t region_id, if (H5Sget_simple_extent_dims(mem_space, total_size, NULL) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (!h5str_sprintf(ENVONLY, str, region_id, type_id, ((char *)region_buf + jndx * type_size), 0, 1)) + if (!h5str_sprintf(ENVONLY, str, region_id, type_id, ((char *)region_buf + jndx * type_size), 1)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (jndx + 1 < (size_t)npoints) if (!h5str_append(str, ", ")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_LIBRARY_ERROR(ENVONLY); } /* end for (jndx = 0; jndx < npoints; jndx++, elmtno++) */ ret_value = SUCCEED; @@ -1650,140 +1637,93 @@ done: } /* end h5str_print_region_data_points */ int -h5str_dump_region_points_data(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_id) +h5str_dump_region_points(JNIEnv *env, h5str_t *str, hid_t region_space, hid_t region_id, int expand_data) { - hssize_t npoints; hsize_t alloc_size; + hssize_t npoints = -1; hsize_t *ptdata = NULL; hid_t dtype = H5I_INVALID_HID; hid_t type_id = H5I_INVALID_HID; int ndims = -1; int ret_value = FAIL; + int i; + char tmp_str[256]; /* * This function fails if the region does not have points. */ - H5E_BEGIN_TRY { npoints = H5Sget_select_elem_npoints(region); } + H5E_BEGIN_TRY { npoints = H5Sget_select_elem_npoints(region_space); } H5E_END_TRY; - if (npoints < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if ((ndims = H5Sget_simple_extent_ndims(region)) < 0) + if (npoints <= 0) { + ret_value = SUCCEED; + goto done; + } + if ((ndims = H5Sget_simple_extent_ndims(region_space)) < 0) H5_LIBRARY_ERROR(ENVONLY); /* Print point information */ - if (npoints > 0) { - alloc_size = (hsize_t)npoints * (hsize_t)ndims * (hsize_t)sizeof(ptdata[0]); - if (alloc_size == (hsize_t)((size_t)alloc_size)) { - if (NULL == (ptdata = (hsize_t *)HDmalloc((size_t)alloc_size))) - H5_OUT_OF_MEMORY_ERROR( - ENVONLY, "h5str_dump_region_points_data: failed to allocate region point data buffer"); + alloc_size = (hsize_t)npoints * (hsize_t)ndims * (hsize_t)sizeof(ptdata[0]); + if (NULL == (ptdata = (hsize_t *)HDmalloc((size_t)alloc_size))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "h5str_dump_region_points: failed to allocate region point data buffer"); - if (H5Sget_select_elem_pointlist(region, (hsize_t)0, (hsize_t)npoints, ptdata) < 0) - H5_LIBRARY_ERROR(ENVONLY); + if (H5Sget_select_elem_pointlist(region_space, (hsize_t)0, (hsize_t)npoints, ptdata) < 0) + H5_LIBRARY_ERROR(ENVONLY); - if ((dtype = H5Dget_type(region_id)) < 0) - H5_LIBRARY_ERROR(ENVONLY); + if (expand_data) { + if ((dtype = H5Dget_type(region_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); - if ((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) < 0) - H5_LIBRARY_ERROR(ENVONLY); + if ((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) < 0) + H5_LIBRARY_ERROR(ENVONLY); - if (h5str_print_region_data_points(ENVONLY, region, region_id, str, ndims, type_id, npoints, - ptdata) < 0) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } + if (h5str_print_region_data_points(ENVONLY, region_space, region_id, str, ndims, type_id, npoints, + ptdata) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); } + else { + if (!h5str_append(str, " REGION_TYPE POINT")) + H5_LIBRARY_ERROR(ENVONLY); - ret_value = SUCCEED; - -done: - if (type_id >= 0) - H5Tclose(type_id); - if (dtype >= 0) - H5Tclose(dtype); - if (ptdata) - HDfree(ptdata); - - return ret_value; -} /* end h5str_dump_region_points_data */ - -#ifndef SKIP_UNUSED_DUMP_ROUTINES -static int -h5str_dump_region_points(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_id) -{ - hssize_t npoints; - hsize_t alloc_size; - hsize_t *ptdata = NULL; - char tmp_str[256]; - int ndims = -1; - int ret_value = FAIL; - - UNUSED(region_id); - - /* - * This function fails if the region does not have points. - */ - H5E_BEGIN_TRY { npoints = H5Sget_select_elem_npoints(region); } - H5E_END_TRY; - - if (npoints < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if ((ndims = H5Sget_simple_extent_ndims(region)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - /* Print point information */ - if (npoints > 0) { - int i; + if (!h5str_append(str, " {")) + H5_LIBRARY_ERROR(ENVONLY); - alloc_size = (hsize_t)npoints * (hsize_t)ndims * (hsize_t)sizeof(ptdata[0]); - if (alloc_size == (hsize_t)((size_t)alloc_size)) { - if (NULL == (ptdata = (hsize_t *)HDmalloc((size_t)alloc_size))) - H5_OUT_OF_MEMORY_ERROR(ENVONLY, - "h5str_dump_region_points: failed to allocate region point buffer"); + for (i = 0; i < npoints; i++) { + int j; - if (H5Sget_select_elem_pointlist(region, (hsize_t)0, (hsize_t)npoints, ptdata) < 0) + if (!h5str_append(str, " ")) H5_LIBRARY_ERROR(ENVONLY); - if (!h5str_append(str, " {")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - - for (i = 0; i < npoints; i++) { - int j; - - if (!h5str_append(str, " ")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - - for (j = 0; j < ndims; j++) { - tmp_str[0] = '\0'; - - if (HDsprintf(tmp_str, "%s%lu", j ? "," : "(", (unsigned long)(ptdata[i * ndims + j])) < - 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_points: HDsprintf failure"); + for (j = 0; j < ndims; j++) { + tmp_str[0] = '\0'; - if (!h5str_append(str, tmp_str)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } /* end for (j = 0; j < ndims; j++) */ + if (HDsprintf(tmp_str, "%s%lu", j ? "," : "(", (unsigned long)(ptdata[i * ndims + j])) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_points: HDsprintf failure"); - if (!h5str_append(str, ") ")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } /* end for (i = 0; i < npoints; i++) */ + if (!h5str_append(str, tmp_str)) + H5_LIBRARY_ERROR(ENVONLY); + } /* end for (j = 0; j < ndims; j++) */ - if (!h5str_append(str, " }")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } /* end if (alloc_size == (hsize_t)((size_t) alloc_size)) */ - } /* end if (npoints > 0) */ + if (!h5str_append(str, ") ")) + H5_LIBRARY_ERROR(ENVONLY); + } /* end for (i = 0; i < npoints; i++) */ + if (!h5str_append(str, " }")) + H5_LIBRARY_ERROR(ENVONLY); + } ret_value = SUCCEED; done: + if (type_id >= 0) + H5Tclose(type_id); + if (dtype >= 0) + H5Tclose(dtype); if (ptdata) HDfree(ptdata); return ret_value; } /* end h5str_dump_region_points */ -#endif static int h5str_is_zero(const void *_mem, size_t size) @@ -2308,30 +2248,22 @@ h5str_render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hs /* Region data */ for (block_index = 0; block_index < block_nelmts; block_index++) { mem = ((unsigned char *)_mem) + block_index * size; - if ((region_id = H5Ropen_object((const H5R_ref_t *)mem, H5P_DEFAULT, H5P_DEFAULT)) < 0) + if ((region_id = H5Ropen_object((H5R_ref_t *)mem, H5P_DEFAULT, H5P_DEFAULT)) < 0) continue; - else { - if ((region_space = - H5Ropen_region((const H5R_ref_t *)mem, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { - if (!h5str_is_zero(mem, H5Tget_size(H5T_STD_REF))) { - region_type = H5Sget_select_type(region_space); - if (region_type == H5S_SEL_POINTS) - ret_value = render_bin_output_region_points(stream, region_space, - region_id, container); - else - ret_value = render_bin_output_region_blocks(stream, region_space, - region_id, container); - } - H5Sclose(region_space); - } /* end if (region_space >= 0) */ - H5Dclose(region_id); - } - - if ((region_type = H5Sget_select_type(region_space)) < 0) { + if ((region_space = H5Ropen_region((H5R_ref_t *)mem, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + if (!h5str_is_zero(mem, H5Tget_size(H5T_STD_REF))) { + region_type = H5Sget_select_type(region_space); + if (region_type == H5S_SEL_POINTS) + ret_value = render_bin_output_region_points(stream, region_space, region_id, + container); + else if (region_type == H5S_SEL_HYPERSLABS) + ret_value = render_bin_output_region_blocks(stream, region_space, region_id, + container); + } H5Sclose(region_space); - H5Dclose(region_id); - continue; - } + } /* end if (region_space >= 0) */ + H5Dclose(region_id); + if (ret_value < 0) break; } @@ -2711,6 +2643,109 @@ done: return ret_value; } /* end render_bin_output_region_points */ +/*------------------------------------------------------------------------- + * Purpose: Print some values from an attribute referenced by object reference. + * + * Parameters Description: + * FILE *buffer is the string into which to render + *------------------------------------------------------------------------- + */ +static int +h5str_dump_region_attribute(JNIEnv *env, h5str_t *str, hid_t region_id) +{ + int ret_value = SUCCEED; + hid_t atype = H5I_INVALID_HID; + hid_t type_id = H5I_INVALID_HID; + hid_t region_space = H5I_INVALID_HID; + hsize_t total_size[H5S_MAX_RANK]; /* total size of dataset*/ + size_t i; /* counter */ + size_t size; /* datum size */ + int sndims; /* rank of dataspace */ + hsize_t p_nelmts; /* total selected elmts */ + hsize_t alloc_size; + + unsigned char *buf = NULL; /* buffer for raw data */ + + /* VL data special information */ + unsigned int vl_data = 0; /* contains VL datatypes */ + + if ((region_space = H5Aget_space(region_id)) < 0) { + ret_value = FAIL; + goto done; + } + + if ((sndims = H5Sget_simple_extent_ndims(region_space)) < 0) { + ret_value = FAIL; + goto done; + } + + /* Assume entire data space to be read */ + H5Sget_simple_extent_dims(region_space, total_size, NULL); + p_nelmts = 1; + + for (i = 0; i < sndims; i++) + p_nelmts *= total_size[i]; + + if ((atype = H5Aget_type(region_id)) < 0) { + ret_value = FAIL; + goto done; + } + if ((type_id = H5Tget_native_type(atype, H5T_DIR_DEFAULT)) < 0) { + ret_value = FAIL; + goto done; + } + + /* Check if we have VL data in the dataset's datatype */ + if (h5str_detect_vlen(type_id) == TRUE) + vl_data = TRUE; + + if (!(size = H5Tget_size(type_id))) { + ret_value = FAIL; + goto done; + } + + alloc_size = p_nelmts * size; + HDassert(alloc_size == (hsize_t)((size_t)alloc_size)); /*check for overflow*/ + if (NULL != (buf = (unsigned char *)HDmalloc((size_t)alloc_size))) { + /* Read the data */ + if (H5Aread(region_id, type_id, buf) >= 0) { + + for (i = 0; i < p_nelmts; i++) { + size_t bytes_in = 0; /* # of bytes to write */ + void * memref = buf + i * size; + + if (!(bytes_in = h5str_sprintf(ENVONLY, str, region_id, type_id, memref, 1))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + if ((i < p_nelmts - 1) && (bytes_in > 0)) { + if (!h5str_append(str, ", ")) + H5_LIBRARY_ERROR(ENVONLY); + } + } + + /* Reclaim any VL memory, if necessary */ + if (vl_data) { + if (H5Treclaim(type_id, region_space, H5P_DEFAULT, buf) < 0) + H5_LIBRARY_ERROR(ENVONLY); + } + } + else + H5_LIBRARY_ERROR(ENVONLY); + } + +done: + if (buf) + HDfree(buf); + if (region_space >= 0) + H5Sclose(region_space); + if (type_id >= 0) + H5Tclose(type_id); + if (atype >= 0) + H5Tclose(type_id); + + return ret_value; +} + int h5str_dump_simple_dset(JNIEnv *env, FILE *stream, hid_t dset, int binary_order) { @@ -2865,7 +2900,7 @@ h5str_dump_simple_dset(JNIEnv *env, FILE *stream, hid_t dset, int binary_order) H5_LIBRARY_ERROR(ENVONLY); if (binary_order == 99) { - if (h5tools_dump_simple_data(ENVONLY, stream, dset, p_type, sm_buf, hs_nelmts) < 0) + if (h5str_dump_simple_data(ENVONLY, stream, dset, p_type, sm_buf, hs_nelmts) < 0) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); } else { @@ -2936,7 +2971,7 @@ H5Tdetect_variable_str(hid_t tid) } /* end H5Tdetect_variable_str */ static int -h5tools_dump_simple_data(JNIEnv *env, FILE *stream, hid_t container, hid_t type, void *_mem, hsize_t nelmts) +h5str_dump_simple_data(JNIEnv *env, FILE *stream, hid_t container, hid_t type, void *_mem, hsize_t nelmts) { unsigned char *mem = (unsigned char *)_mem; h5str_t buffer; /* string into which to render */ @@ -2956,38 +2991,38 @@ h5tools_dump_simple_data(JNIEnv *env, FILE *stream, hid_t container, hid_t type, h5str_new(&buffer, 32 * size); if (!buffer.s) - H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5tools_dump_simple_data: failed to allocate buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_simple_data: failed to allocate buffer"); - if (!(bytes_in = h5str_sprintf(ENVONLY, &buffer, container, type, memref, 0, 1))) + if (!(bytes_in = h5str_sprintf(ENVONLY, &buffer, container, type, memref, 1))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - if (i > 0) { + if ((i > 0) && (bytes_in > 0)) { if (HDfprintf(stream, ", ") < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5tools_dump_simple_data: HDfprintf failure"); + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_data: HDfprintf failure"); if (line_count >= H5TOOLS_TEXT_BLOCK) { line_count = 0; if (HDfprintf(stream, "\n") < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5tools_dump_simple_data: HDfprintf failure"); + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_data: HDfprintf failure"); } } if (HDfprintf(stream, "%s", buffer.s) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5tools_dump_simple_data: HDfprintf failure"); + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_data: HDfprintf failure"); h5str_free(&buffer); } /* end for (i = 0; i < nelmts... */ if (HDfprintf(stream, "\n") < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5tools_dump_simple_data: HDfprintf failure"); + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_data: HDfprintf failure"); done: if (buffer.s) h5str_free(&buffer); return ret_value; -} /* end h5tools_dump_simple_data */ +} /* end h5str_dump_simple_data */ /* * Utility Java APIs @@ -3041,7 +3076,7 @@ Java_hdf_hdf5lib_H5_H5AreadComplex(JNIEnv *env, jclass clss, jlong attr_id, jlon for (i = 0; i < (size_t)n; i++) { h5str.s[0] = '\0'; - if (!h5str_sprintf(ENVONLY, &h5str, attr_id, mem_type_id, readBuf + (i * size), 0, 0)) + if (!h5str_sprintf(ENVONLY, &h5str, attr_id, mem_type_id, readBuf + (i * size), 0)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s))) diff --git a/java/src/jni/h5util.h b/java/src/jni/h5util.h index 4b79eda..a5e9607 100644 --- a/java/src/jni/h5util.h +++ b/java/src/jni/h5util.h @@ -41,13 +41,11 @@ extern void h5str_resize(h5str_t *str, size_t new_len); extern char * h5str_append(h5str_t *str, const char *cstr); extern size_t h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_buf, size_t out_buf_offset); -extern void h5str_sprint_reference(JNIEnv *env, h5str_t *out_str, hid_t container, void *ref_p); +extern int h5str_sprint_reference(JNIEnv *env, h5str_t *out_str, void *ref_p); extern size_t h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *in_buf, - size_t in_buf_len, int expand_data); + int expand_data); extern void h5str_array_free(char **strs, size_t len); extern int h5str_dump_simple_dset(JNIEnv *env, FILE *stream, hid_t dset, int binary_order); -extern int h5str_dump_region_blocks_data(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj); -extern int h5str_dump_region_points_data(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj); extern htri_t H5Tdetect_variable_str(hid_t tid); diff --git a/java/src/jni/h5vlImp.c b/java/src/jni/h5vlImp.c index 9b48d21..40f8863 100644 --- a/java/src/jni/h5vlImp.c +++ b/java/src/jni/h5vlImp.c @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5vlImp.h b/java/src/jni/h5vlImp.h index 70c5006..bf467af 100644 --- a/java/src/jni/h5vlImp.h +++ b/java/src/jni/h5vlImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/h5zImp.h b/java/src/jni/h5zImp.h index 924776c..4e8982e 100644 --- a/java/src/jni/h5zImp.h +++ b/java/src/jni/h5zImp.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * diff --git a/java/src/jni/nativeData.h b/java/src/jni/nativeData.h index 398dfc9..0150c75 100644 --- a/java/src/jni/nativeData.h +++ b/java/src/jni/nativeData.h @@ -1,6 +1,5 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * |