diff options
Diffstat (limited to 'java/src')
147 files changed, 16665 insertions, 8412 deletions
diff --git a/java/src/CMakeLists.txt b/java/src/CMakeLists.txt index 3f80d8f..0bfbaf7 100644 --- a/java/src/CMakeLists.txt +++ b/java/src/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.10) +cmake_minimum_required (VERSION 3.12) project (HDF5_JAVA_SRC C) #----------------------------------------------------------------------------- diff --git a/java/src/Makefile.am b/java/src/Makefile.am index fcdeae9..5bb72ad 100644 --- a/java/src/Makefile.am +++ b/java/src/Makefile.am @@ -1,16 +1,15 @@ # # Copyright by The HDF Group. -# Copyright by the Board of Trustees of the University of Illinois. # All rights reserved. # # This file is part of HDF5. The full HDF5 copyright notice, including # terms governing use, modification, and redistribution, is contained in # the COPYING file, which can be found at the root of the source code -# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. +# distribution tree, or in https://www.hdfgroup.org/licenses. # If you do not have access to either file, you may request a copy from # help@hdfgroup.org. # -# +# # This makefile mostly just reinvokes make in the various subdirectories # but does so in the correct order. You can alternatively invoke make from # each subdirectory manually. @@ -37,7 +36,7 @@ jarfile = jar$(PACKAGE_TARNAME)-$(PACKAGE_VERSION).jar hdf5_javadir = $(libdir) pkgpath = hdf/hdf5lib -CLASSPATH_ENV=CLASSPATH=.:$(top_srcdir)/java/lib/slf4j-api-1.7.25.jar:$$CLASSPATH +CLASSPATH_ENV=CLASSPATH=.:$(top_srcdir)/java/lib/slf4j-api-1.7.33.jar:$$CLASSPATH AM_JAVACFLAGS = $(H5_JAVACFLAGS) -deprecation @@ -51,10 +50,10 @@ hdf5_java_JAVA = \ ${pkgpath}/callbacks/H5D_iterate_t.java \ ${pkgpath}/callbacks/H5E_walk_cb.java \ ${pkgpath}/callbacks/H5E_walk_t.java \ - ${pkgpath}/callbacks/H5L_iterate_cb.java \ ${pkgpath}/callbacks/H5L_iterate_t.java \ - ${pkgpath}/callbacks/H5O_iterate_cb.java \ + ${pkgpath}/callbacks/H5L_iterate_opdata_t.java \ ${pkgpath}/callbacks/H5O_iterate_t.java \ + ${pkgpath}/callbacks/H5O_iterate_opdata_t.java \ ${pkgpath}/callbacks/H5P_cls_close_func_cb.java \ ${pkgpath}/callbacks/H5P_cls_close_func_t.java \ ${pkgpath}/callbacks/H5P_cls_copy_func_cb.java \ @@ -70,7 +69,7 @@ hdf5_java_JAVA = \ ${pkgpath}/callbacks/H5P_prp_set_func_cb.java \ ${pkgpath}/callbacks/H5P_iterate_cb.java \ ${pkgpath}/callbacks/H5P_iterate_t.java \ - ${pkgpath}/exceptions/HDF5AtomException.java \ + ${pkgpath}/exceptions/HDF5IdException.java \ ${pkgpath}/exceptions/HDF5AttributeException.java \ ${pkgpath}/exceptions/HDF5BtreeException.java \ ${pkgpath}/exceptions/HDF5DataFiltersException.java \ @@ -103,6 +102,8 @@ hdf5_java_JAVA = \ ${pkgpath}/structs/H5G_info_t.java \ ${pkgpath}/structs/H5L_info_t.java \ ${pkgpath}/structs/H5O_info_t.java \ + ${pkgpath}/structs/H5O_native_info_t.java \ + ${pkgpath}/structs/H5O_token_t.java \ ${pkgpath}/structs/H5O_hdr_info_t.java \ ${pkgpath}/structs/H5AC_cache_config_t.java \ ${pkgpath}/H5.java \ diff --git a/java/src/hdf/CMakeLists.txt b/java/src/hdf/CMakeLists.txt index 161ddf1..5660158 100644 --- a/java/src/hdf/CMakeLists.txt +++ b/java/src/hdf/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.10) +cmake_minimum_required (VERSION 3.12) project (HDF5_JAVA_HDF C) add_subdirectory (hdf5lib) diff --git a/java/src/hdf/hdf5lib/CMakeLists.txt b/java/src/hdf/hdf5lib/CMakeLists.txt index be8f60a..a26e117 100644 --- a/java/src/hdf/hdf5lib/CMakeLists.txt +++ b/java/src/hdf/hdf5lib/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.10) +cmake_minimum_required (VERSION 3.12) project (HDF5_JAVA_HDF_HDF5 Java) set (CMAKE_VERBOSE_MAKEFILE 1) @@ -18,10 +18,10 @@ set (HDF5_JAVA_HDF_HDF5_CALLBACKS_SOURCES callbacks/H5D_iterate_t.java callbacks/H5E_walk_cb.java callbacks/H5E_walk_t.java - callbacks/H5L_iterate_cb.java callbacks/H5L_iterate_t.java - callbacks/H5O_iterate_cb.java + callbacks/H5L_iterate_opdata_t.java callbacks/H5O_iterate_t.java + callbacks/H5O_iterate_opdata_t.java callbacks/H5P_cls_close_func_cb.java callbacks/H5P_cls_close_func_t.java callbacks/H5P_cls_copy_func_cb.java @@ -40,9 +40,14 @@ set (HDF5_JAVA_HDF_HDF5_CALLBACKS_SOURCES callbacks/Callbacks.java ) +set (HDF5_JAVADOC_HDF_HDF5_CALLBACKS_SOURCES + ${HDF5_JAVA_HDF_HDF5_CALLBACKS_SOURCES} + callbacks/package-info.java +) + set (HDF5_JAVA_HDF_HDF5_EXCEPTIONS_SOURCES exceptions/HDF5Exception.java - exceptions/HDF5AtomException.java + exceptions/HDF5IdException.java exceptions/HDF5AttributeException.java exceptions/HDF5BtreeException.java exceptions/HDF5DataFiltersException.java @@ -67,6 +72,11 @@ set (HDF5_JAVA_HDF_HDF5_EXCEPTIONS_SOURCES exceptions/HDF5SymbolTableException.java ) +set (HDF5_JAVADOC_HDF_HDF5_EXCEPTIONS_SOURCES + ${HDF5_JAVA_HDF_HDF5_EXCEPTIONS_SOURCES} + exceptions/package-info.java +) + set (HDF5_JAVA_HDF_HDF5_STRUCTS_SOURCES structs/H5_ih_info_t.java structs/H5A_info_t.java @@ -79,6 +89,13 @@ set (HDF5_JAVA_HDF_HDF5_STRUCTS_SOURCES structs/H5L_info_t.java structs/H5O_hdr_info_t.java structs/H5O_info_t.java + structs/H5O_native_info_t.java + structs/H5O_token_t.java +) + +set (HDF5_JAVADOC_HDF_HDF5_STRUCTS_SOURCES + ${HDF5_JAVA_HDF_HDF5_STRUCTS_SOURCES} + structs/package-info.java ) set (HDF5_JAVA_HDF_HDF5_SOURCES @@ -89,6 +106,11 @@ set (HDF5_JAVA_HDF_HDF5_SOURCES H5.java ) +set (HDF5_JAVADOC_HDF_HDF5_SOURCES + ${HDF5_JAVA_HDF_HDF5_SOURCES} + package-info.java +) + set (CMAKE_JNI_TARGET TRUE) file (WRITE ${PROJECT_BINARY_DIR}/Manifest.txt @@ -112,7 +134,7 @@ add_dependencies (${HDF5_JAVA_HDF5_LIB_TARGET} ${HDF5_JAVA_JNI_LIB_TARGET}) set_target_properties (${HDF5_JAVA_HDF5_LIB_TARGET} PROPERTIES FOLDER libraries/java) create_javadoc(hdf5_java_doc - FILES ${HDF5_JAVA_HDF_HDF5_CALLBACKS_SOURCES} ${HDF5_JAVA_HDF_HDF5_EXCEPTIONS_SOURCES} ${HDF5_JAVA_HDF_HDF5_STRUCTS_SOURCES} ${HDF5_JAVA_HDF_HDF5_SOURCES} + FILES ${HDF5_JAVADOC_HDF_HDF5_CALLBACKS_SOURCES} ${HDF5_JAVADOC_HDF_HDF5_EXCEPTIONS_SOURCES} ${HDF5_JAVADOC_HDF_HDF5_STRUCTS_SOURCES} ${HDF5_JAVADOC_HDF_HDF5_SOURCES} OVERVIEW ${HDF5_JAVA_HDF5_SRC_DIR}/overview.html CLASSPATH ${CMAKE_JAVA_INCLUDE_PATH} WINDOWTITLE "HDF5 Java" diff --git a/java/src/hdf/hdf5lib/H5.java b/java/src/hdf/hdf5lib/H5.java index 4b563fd..3180ede 100644 --- a/java/src/hdf/hdf5lib/H5.java +++ b/java/src/hdf/hdf5lib/H5.java @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -24,10 +24,10 @@ import hdf.hdf5lib.callbacks.H5D_iterate_cb; import hdf.hdf5lib.callbacks.H5D_iterate_t; import hdf.hdf5lib.callbacks.H5E_walk_cb; import hdf.hdf5lib.callbacks.H5E_walk_t; -import hdf.hdf5lib.callbacks.H5L_iterate_cb; import hdf.hdf5lib.callbacks.H5L_iterate_t; -import hdf.hdf5lib.callbacks.H5O_iterate_cb; +import hdf.hdf5lib.callbacks.H5L_iterate_opdata_t; import hdf.hdf5lib.callbacks.H5O_iterate_t; +import hdf.hdf5lib.callbacks.H5O_iterate_opdata_t; import hdf.hdf5lib.callbacks.H5P_cls_close_func_cb; import hdf.hdf5lib.callbacks.H5P_cls_close_func_t; import hdf.hdf5lib.callbacks.H5P_cls_copy_func_cb; @@ -55,6 +55,8 @@ import hdf.hdf5lib.structs.H5FD_ros3_fapl_t; import hdf.hdf5lib.structs.H5G_info_t; import hdf.hdf5lib.structs.H5L_info_t; import hdf.hdf5lib.structs.H5O_info_t; +import hdf.hdf5lib.structs.H5O_native_info_t; +import hdf.hdf5lib.structs.H5O_token_t; /** * This class is the Java interface for the HDF5 library. @@ -62,8 +64,8 @@ import hdf.hdf5lib.structs.H5O_info_t; * This code is the called by Java programs to access the entry points of the HDF5 library. Each routine wraps a single * HDF5 entry point, generally with the arguments and return codes analogous to the C interface. * <p> - * For details of the HDF5 library, see the HDF5 Documentation at: <a - * href="http://hdfgroup.org/HDF5/">http://hdfgroup.org/HDF5/</a> + * For details of the HDF5 library, see the HDF5 Documentation at: + * <a href="http://hdfgroup.org/HDF5/">http://hdfgroup.org/HDF5/</a> * <hr> * <p> * <b>Mapping of arguments for Java</b> @@ -159,9 +161,9 @@ import hdf.hdf5lib.structs.H5O_info_t; * disk (source) and in memory (destination). * <p> * For Java, this ``ANY'' is a problem, as the type of data must always be declared. Furthermore, multidimensional - * arrays are definitely <i>not</i> layed out contiguously in memory. It would be infeasible to declare a separate - * routine for every combination of number type and dimensionality. For that reason, the <a - * href="./hdf.hdf5lib.HDFArray.html"><b>HDFArray</b></a> class is used to discover the type, shape, and size of the + * arrays are definitely <i>not</i> laid out contiguously in memory. It would be infeasible to declare a separate + * routine for every combination of number type and dimensionality. For that reason, the + * <a href="./hdf.hdf5lib.HDFArray.html"><b>HDFArray</b></a> class is used to discover the type, shape, and size of the * data array at run time, and to convert to and from a contiguous array of bytes in synchronized static native C order. * <p> * The upshot is that any Java array of numbers (either primitive or sub-classes of type <b>Number</b>) can be passed as @@ -185,8 +187,8 @@ import hdf.hdf5lib.structs.H5O_info_t; * <b><i>H5F_ACC_RDWR</i></b> and <b><i>H5P_DEFAULT</i></b>. * <p> * The HDF-5 API defines a set of values that describe number types and sizes, such as "H5T_NATIVE_INT" and "hsize_t". - * These values are determined at run time by the HDF-5 C library. To support these parameters, the Java class <a - * href="./hdf.hdf5lib.HDF5CDataTypes.html"> <b>HDF5CDataTypes</b></a> looks up the values when initiated. The values + * These values are determined at run time by the HDF-5 C library. To support these parameters, the Java class + * <a href="./hdf.hdf5lib.HDF5CDataTypes.html"> <b>HDF5CDataTypes</b></a> looks up the values when initiated. The values * can be accessed as public variables of the Java class, such as: * * <pre> @@ -202,8 +204,8 @@ import hdf.hdf5lib.structs.H5O_info_t; * JHI5. Errors are converted into Java exceptions. This is totally different from the C interface, but is very natural * for Java programming. * <p> - * The exceptions of the JHI5 are organized as sub-classes of the class <a - * href="./hdf.hdf5lib.exceptions.HDF5Exception.html"> <b>HDF5Exception</b></a>. There are two subclasses of + * The exceptions of the JHI5 are organized as sub-classes of the class + * <a href="./hdf.hdf5lib.exceptions.HDF5Exception.html"> <b>HDF5Exception</b></a>. There are two subclasses of * <b>HDF5Exception</b>, <a href="./hdf.hdf5lib.exceptions.HDF5LibraryException.html"> <b>HDF5LibraryException</b></a> * and <a href="./hdf.hdf5lib.exceptions.HDF5JavaException.html"> <b>HDF5JavaException</b></a>. The sub-classes of the * former represent errors from the HDF-5 C library, while sub-classes of the latter represent errors in the JHI5 @@ -214,7 +216,7 @@ import hdf.hdf5lib.structs.H5O_info_t; * exception handlers to print out the HDF-5 error stack. * <hr> * - * @version HDF5 1.11.6 <BR> + * @version HDF5 1.13.2 <BR> * <b>See also: <a href ="./hdf.hdf5lib.HDFArray.html"> hdf.hdf5lib.HDFArray</a> </b><BR> * <a href ="./hdf.hdf5lib.HDF5Constants.html"> hdf.hdf5lib.HDF5Constants</a><BR> * <a href ="./hdf.hdf5lib.HDF5CDataTypes.html"> hdf.hdf5lib.HDF5CDataTypes</a><BR> @@ -237,12 +239,16 @@ public class H5 implements java.io.Serializable { * * Make sure to update the versions number when a different library is used. */ - public final static int LIB_VERSION[] = { 1, 11, 6 }; + public final static int LIB_VERSION[] = { 1, 13, 2 }; + /** + * add system property to load library by path + */ public final static String H5PATH_PROPERTY_KEY = "hdf.hdf5lib.H5.hdf5lib"; - // add system property to load library by name from library path, via - // System.loadLibrary() + /** + * add system property to load library by name from library path, via System.loadLibrary() + */ public final static String H5_LIBRARY_NAME_PROPERTY_KEY = "hdf.hdf5lib.H5.loadLibraryName"; private static String s_libraryName; private static boolean isLibraryLoaded = false; @@ -255,6 +261,9 @@ public class H5 implements java.io.Serializable { loadH5Lib(); } + /** + * load native library + */ public static void loadH5Lib() { // Make sure that the library is loaded only once if (isLibraryLoaded) @@ -433,7 +442,7 @@ public class H5 implements java.io.Serializable { /** * Turn on error handling. By default, the C library prints the error stack of the HDF-5 C library on stdout. This - * behavior may be reenabled by calling H5error_on(). + * behavior may be re-enabled by calling H5error_on(). */ public synchronized static native void H5error_on(); @@ -466,6 +475,35 @@ public class H5 implements java.io.Serializable { **/ public synchronized static native int H5get_libversion(int[] libversion) throws HDF5LibraryException; + /** + * H5set_free_list_limits + * Sets limits on the different kinds of free lists. Setting a value + * of -1 for a limit means no limit of that type. These limits are global + * for the entire library. Each "global" limit only applies to free lists + * of that type, so if an application sets a limit of 1 MB on each of the + * global lists, up to 3 MB of total storage might be allocated (1MB on + * each of regular, array and block type lists). + * + * The settings for block free lists are duplicated to factory free lists. + * Factory free list limits cannot be set independently currently. + * + * @param reg_global_lim + * The limit on all "regular" free list memory used + * @param reg_list_lim + * The limit on memory used in each "regular" free list + * @param arr_global_lim + * The limit on all "array" free list memory used + * @param arr_list_lim + * The limit on memory used in each "array" free list + * @param blk_global_lim + * The limit on all "block" free list memory used + * @param blk_list_lim + * The limit on memory used in each "block" free list + * @return a non-negative value if successful, along with the version information. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + */ public synchronized static native int H5set_free_list_limits(int reg_global_lim, int reg_list_lim, int arr_global_lim, int arr_list_lim, int blk_global_lim, int blk_list_lim) throws HDF5LibraryException; @@ -474,8 +512,8 @@ public class H5 implements java.io.Serializable { * * @param file_export_name * The file name to export data into. - * @param file_name - * The name of the HDF5 file containing the dataset. + * @param file_id + * The identifier of the HDF5 file containing the dataset. * @param object_path * The full path of the dataset to be exported. * @param binary_order @@ -487,10 +525,31 @@ public class H5 implements java.io.Serializable { * @exception HDF5LibraryException * - Error from the HDF-5 Library. **/ - public synchronized static native void H5export_dataset(String file_export_name, String file_name, + public synchronized static native void H5export_dataset(String file_export_name, long file_id, String object_path, int binary_order) throws HDF5LibraryException; /** + * H5export_attribute is a utility function to save data in a file. + * + * @param file_export_name + * The file name to export data into. + * @param dataset_id + * The identifier of the dataset containing the attribute. + * @param attribute_name + * The attribute to be exported. + * @param binary_order + * 99 - export data as text. + * 1 - export data as binary Native Order. + * 2 - export data as binary Little Endian. + * 3 - export data as binary Big Endian. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native void H5export_attribute(String file_export_name, long dataset_id, + String attribute_name, int binary_order) throws HDF5LibraryException; + + /** * H5is_library_threadsafe Checks to see if the library was built with thread-safety enabled. * * @return true if hdf5 library implements threadsafe @@ -1014,7 +1073,7 @@ public class H5 implements java.io.Serializable { /** * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with - * mem_type_id. The entire attribute is read into buf from the file. + * mem_type_id. The entire attribute is read into buffer from the file. * * @param attr_id * IN: Identifier of an attribute to read. @@ -1035,11 +1094,47 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Aread(long attr_id, long mem_type_id, byte[] obj, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Aread(long attr_id, long mem_type_id, byte[] buf) throws HDF5LibraryException, NullPointerException { return H5Aread(attr_id, mem_type_id, buf, true); } + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param obj + * Buffer to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Aread(long attr_id, long mem_type_id, Object obj) throws HDF5Exception, HDF5LibraryException, NullPointerException { return H5Aread(attr_id, mem_type_id, obj, true); @@ -1107,7 +1202,9 @@ public class H5 implements java.io.Serializable { log.trace("H5Aread_dname_D"); status = H5Aread_double(attr_id, mem_type_id, (double[]) obj, isCriticalPinning); } - else if ((H5.H5Tdetect_class(mem_type_id, HDF5Constants.H5T_REFERENCE) && (is1D && (dataClass.getComponentType() == String.class))) || H5.H5Tequal(mem_type_id, HDF5Constants.H5T_STD_REF_DSETREG)) { + else if ((H5.H5Tdetect_class(mem_type_id, HDF5Constants.H5T_REFERENCE) && + (is1D && (dataClass.getComponentType() == String.class))) || + H5.H5Tequal(mem_type_id, HDF5Constants.H5T_STD_REF_DSETREG)) { log.trace("H5Aread_reg_ref"); status = H5Aread_reg_ref(attr_id, mem_type_id, (String[]) obj); } @@ -1137,63 +1234,343 @@ public class H5 implements java.io.Serializable { return status; } + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of double from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of double to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Aread_double(long attr_id, long mem_type_id, double[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of double from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of double to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Aread_double(long attr_id, long mem_type_id, double[] buf) throws HDF5LibraryException, NullPointerException { return H5Aread_double(attr_id, mem_type_id, buf, true); } + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of float from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of float to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Aread_float(long attr_id, long mem_type_id, float[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of float from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of float to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Aread_float(long attr_id, long mem_type_id, float[] buf) throws HDF5LibraryException, NullPointerException { return H5Aread_float(attr_id, mem_type_id, buf, true); } + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of int from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of int to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Aread_int(long attr_id, long mem_type_id, int[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of int from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of int to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Aread_int(long attr_id, long mem_type_id, int[] buf) throws HDF5LibraryException, NullPointerException { return H5Aread_int(attr_id, mem_type_id, buf, true); } + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of long from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of long to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Aread_long(long attr_id, long mem_type_id, long[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of long from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of long to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Aread_long(long attr_id, long mem_type_id, long[] buf) throws HDF5LibraryException, NullPointerException { return H5Aread_long(attr_id, mem_type_id, buf, true); } + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of String from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of String to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Aread_reg_ref(long attr_id, long mem_type_id, String[] buf) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of short from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of short to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Aread_short(long attr_id, long mem_type_id, short[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of shortfrom the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of short to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Aread_short(long attr_id, long mem_type_id, short[] buf) throws HDF5LibraryException, NullPointerException { return H5Aread_short(attr_id, mem_type_id, buf, true); } + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of variable-lenght from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of variable-lenght to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5AreadVL(long attr_id, long mem_type_id, Object[] buf) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of String from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of String to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Aread_string(long attr_id, long mem_type_id, String[] buf) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of variable-lenght strings from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of variable-lenght strings to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Aread_VLStrings(long attr_id, long mem_type_id, Object[] buf) throws HDF5LibraryException, NullPointerException; + /** + * H5Aread reads an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is read into buffer of string from the file. + * + * @param attr_id + * IN: Identifier of an attribute to read. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * Buffer of string to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5AreadComplex(long attr_id, long mem_type_id, String[] buf) throws HDF5LibraryException, NullPointerException; @@ -1266,12 +1643,48 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Awrite(long attr_id, long mem_type_id, byte[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buf to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static int H5Awrite(long attr_id, long mem_type_id, byte[] buf) throws HDF5LibraryException, NullPointerException { return H5Awrite(attr_id, mem_type_id, buf, true); } + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buf to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param obj + * IN: Buffer with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static int H5Awrite(long attr_id, long mem_type_id, Object obj) throws HDF5Exception, HDF5LibraryException, NullPointerException { @@ -1349,60 +1762,286 @@ public class H5 implements java.io.Serializable { return status; } + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of double to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of double with data to be written to the file. + * @param isCriticalPinning + * IN: request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static native int H5Awrite_double(long attr_id, long mem_type_id, double[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of double to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of double with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static int H5Awrite_double(long attr_id, long mem_type_id, double[] buf) throws HDF5LibraryException, NullPointerException { return H5Awrite_double(attr_id, mem_type_id, buf, true); } + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of float to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of float with data to be written to the file. + * @param isCriticalPinning + * IN: request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static native int H5Awrite_float(long attr_id, long mem_type_id, float[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of float to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of float with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static int H5Awrite_float(long attr_id, long mem_type_id, float[] buf) throws HDF5LibraryException, NullPointerException { return H5Awrite_float(attr_id, mem_type_id, buf, true); } + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of int to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of int with data to be written to the file. + * @param isCriticalPinning + * IN: request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static native int H5Awrite_int(long attr_id, long mem_type_id, int[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of int to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of int with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static int H5Awrite_int(long attr_id, long mem_type_id, int[] buf) throws HDF5LibraryException, NullPointerException { return H5Awrite_int(attr_id, mem_type_id, buf, true); } + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of long to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of long with data to be written to the file. + * @param isCriticalPinning + * IN: request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static native int H5Awrite_long(long attr_id, long mem_type_id, long[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of long to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of long with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static int H5Awrite_long(long attr_id, long mem_type_id, long[] buf) throws HDF5LibraryException, NullPointerException { return H5Awrite_long(attr_id, mem_type_id, buf, true); } + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of short to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of short with data to be written to the file. + * @param isCriticalPinning + * IN: request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static native int H5Awrite_short(long attr_id, long mem_type_id, short[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of short to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of short with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static int H5Awrite_short(long attr_id, long mem_type_id, short[] buf) throws HDF5LibraryException, NullPointerException { return H5Awrite_short(attr_id, mem_type_id, buf, true); } + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of string to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of string with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static native int H5Awrite_string(long attr_id, long mem_type_id, String[] buf) throws HDF5LibraryException, NullPointerException; + /** + * H5Awrite writes an attribute, specified with attr_id. The attribute's memory datatype is specified with + * mem_type_id. The entire attribute is written from buffer of variable-lenght to the file. + * + * @param attr_id + * IN: Identifier of an attribute to write. + * @param mem_type_id + * IN: Identifier of the attribute datatype (in memory). + * @param buf + * IN: Buffer of variable-lenght with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data is null. + **/ public synchronized static native int H5AwriteVL(long attr_id, long mem_type_id, Object[] buf) throws HDF5LibraryException, NullPointerException; /** * H5Awrite_VLStrings writes a variable length String dataset, specified by its identifier attr_id, from - * the application memory buffer buf into the file. + * the application memory buffer buffer of variable-lenght strings into the file. * * ---- contributed by Rosetta Biosoftware * @@ -1411,7 +2050,7 @@ public class H5 implements java.io.Serializable { * @param mem_type_id * Identifier of the memory datatype. * @param buf - * Buffer with data to be written to the file. + * Buffer of variable-lenght strings with data to be written to the file. * * @return a non-negative value if successful * @@ -1458,7 +2097,7 @@ public class H5 implements java.io.Serializable { * IN: Identifier for object to which attributes are attached; may be group, dataset, or named datatype. * @param idx_type * IN: The type of index specified by idx_type can be one of the following: - * H5_INDEX_NAME An alpha-numeric index by attribute name. + * H5_INDEX_NAME An alphanumeric index by attribute name. * H5_INDEX_CRT_ORDER An index by creation order. * @param order * IN: The order in which the index is to be traversed, as specified by order, can be one of the following: @@ -1498,7 +2137,7 @@ public class H5 implements java.io.Serializable { * IN: Name of object, relative to location. * @param idx_type * IN: The type of index specified by idx_type can be one of the following: - * H5_INDEX_NAME An alpha-numeric index by attribute name. + * H5_INDEX_NAME An alphanumeric index by attribute name. * H5_INDEX_CRT_ORDER An index by creation order. * @param order * IN: The order in which the index is to be traversed, as specified by order, can be one of the following: @@ -1918,12 +2557,60 @@ public class H5 implements java.io.Serializable { long file_space_id, long xfer_plist_id, byte[] obj, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer buf. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Dread(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, byte[] buf) throws HDF5LibraryException, NullPointerException { return H5Dread(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer buf. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param obj + * Buffer to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Dread(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, Object obj) throws HDF5Exception, HDF5LibraryException, NullPointerException { @@ -2005,7 +2692,9 @@ public class H5 implements java.io.Serializable { status = H5Dread_double(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, (double[]) obj, isCriticalPinning); } - else if ((H5.H5Tdetect_class(mem_type_id, HDF5Constants.H5T_REFERENCE) && (is1D && (dataClass.getComponentType() == String.class))) || H5.H5Tequal(mem_type_id, HDF5Constants.H5T_STD_REF_DSETREG)) { + else if ((H5.H5Tdetect_class(mem_type_id, HDF5Constants.H5T_REFERENCE) && + (is1D && (dataClass.getComponentType() == String.class))) || + H5.H5Tequal(mem_type_id, HDF5Constants.H5T_STD_REF_DSETREG)) { log.trace("H5Dread_reg_ref"); status = H5Dread_reg_ref(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, (String[]) obj); @@ -2037,65 +2726,411 @@ public class H5 implements java.io.Serializable { return status; } + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of type double. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of type double to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Dread_double(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, double[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of type double. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of double to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Dread_double(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, double[] buf) throws HDF5LibraryException, NullPointerException { return H5Dread_double(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of float. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of float to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Dread_float(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, float[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of float. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of float to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Dread_float(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, float[] buf) throws HDF5LibraryException, NullPointerException { return H5Dread_float(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of int. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of int to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Dread_int(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, int[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of int. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of int to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Dread_int(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, int[] buf) throws HDF5LibraryException, NullPointerException { return H5Dread_int(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of long. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of long to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Dread_long(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, long[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of long. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of long to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Dread_long(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, long[] buf) throws HDF5LibraryException, NullPointerException { return H5Dread_long(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of string. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of string to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Dread_reg_ref(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, String[] buf) throws HDF5LibraryException, NullPointerException; + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of short. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of short to store data read from the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Dread_short(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, short[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of short. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of short to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static int H5Dread_short(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, short[] buf) throws HDF5LibraryException, NullPointerException { return H5Dread_short(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of variable-lenght. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of variable-lenght to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5DreadVL(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, Object[] buf) throws HDF5LibraryException, NullPointerException; + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of string. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of string to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Dread_string(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, String[] buf) throws HDF5LibraryException, NullPointerException; + /** + * H5Dread reads a (partial) dataset, specified by its identifier dataset_id, from the file into the application + * memory buffer of variable-lenght strings. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of variable-lenght strings to store data read from the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - data buffer is null. + **/ public synchronized static native int H5Dread_VLStrings(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, Object[] buf) throws HDF5LibraryException, NullPointerException; @@ -2155,13 +3190,16 @@ public class H5 implements java.io.Serializable { * - Error from the HDF-5 Library. * @exception NullPointerException * - buf is null. + * + * @deprecated As of HDF5 1.12.0 in favor of H5Treclaim **/ + @Deprecated public synchronized static native int H5Dvlen_reclaim(long type_id, long space_id, long xfer_plist_id, byte[] buf) throws HDF5LibraryException, NullPointerException; /** * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer - * buf into the file. + * into the file. * * @param dataset_id * Identifier of the dataset read from. @@ -2189,12 +3227,60 @@ public class H5 implements java.io.Serializable { long file_space_id, long xfer_plist_id, byte[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static int H5Dwrite(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, byte[] buf) throws HDF5LibraryException, NullPointerException { return H5Dwrite(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param obj + * Buffer with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static int H5Dwrite(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, Object obj) throws HDF5Exception, HDF5LibraryException, NullPointerException { @@ -2290,59 +3376,357 @@ public class H5 implements java.io.Serializable { return status; } + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of double with data to be written to the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static native int H5Dwrite_double(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, double[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of double with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static int H5Dwrite_double(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, double[] buf) throws HDF5LibraryException, NullPointerException { return H5Dwrite_double(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of float with data to be written to the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static native int H5Dwrite_float(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, float[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of float with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static int H5Dwrite_float(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, float[] buf) throws HDF5LibraryException, NullPointerException { return H5Dwrite_float(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of int with data to be written to the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static native int H5Dwrite_int(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, int[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of int with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static int H5Dwrite_int(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, int[] buf) throws HDF5LibraryException, NullPointerException { return H5Dwrite_int(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of long with data to be written to the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static native int H5Dwrite_long(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, long[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of long with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static int H5Dwrite_long(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, long[] buf) throws HDF5LibraryException, NullPointerException { return H5Dwrite_long(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of short with data to be written to the file. + * @param isCriticalPinning + * request lock on data reference. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static native int H5Dwrite_short(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, short[] buf, boolean isCriticalPinning) throws HDF5LibraryException, NullPointerException; + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of short with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static int H5Dwrite_short(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, short[] buf) throws HDF5LibraryException, NullPointerException { return H5Dwrite_short(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, buf, true); } + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of string with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static native int H5Dwrite_string(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, String[] buf) throws HDF5LibraryException, NullPointerException; + /** + * H5Dwrite writes a (partial) dataset, specified by its identifier dataset_id, from the application memory buffer + * into the file. + * + * @param dataset_id + * Identifier of the dataset read from. + * @param mem_type_id + * Identifier of the memory datatype. + * @param mem_space_id + * Identifier of the memory dataspace. + * @param file_space_id + * Identifier of the dataset's dataspace in the file. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer of variable-length with data to be written to the file. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public synchronized static native int H5DwriteVL(long dataset_id, long mem_type_id, long mem_space_id, long file_space_id, long xfer_plist_id, Object[] buf) throws HDF5LibraryException, NullPointerException; @@ -2619,7 +4003,7 @@ public class H5 implements java.io.Serializable { /** - * H5Epush2 pushes a new error record onto the error stack specified by estack_id. + * H5Epush pushes a new error record onto the error stack specified by estack_id. * * @param stack_id * IN: Error stack identifier. @@ -2648,6 +4032,31 @@ public class H5 implements java.io.Serializable { { H5Epush2(stack_id, file, func, line, cls_id, maj_id, min_id, msg); } + /** + * H5Epush2 pushes a new error record onto the error stack specified by estack_id. + * + * @param stack_id + * IN: Error stack identifier. + * @param file + * IN: Name of the file in which the error was detected. + * @param func + * IN: Name of the function in which the error was detected. + * @param line + * IN: Line number within the file at which the error was detected. + * @param cls_id + * IN: Error class identifier. + * @param maj_id + * IN: Major error identifier. + * @param min_id + * IN: Minor error identifier. + * @param msg + * IN: Error description string. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - file, func, or msg is null. + **/ public synchronized static native void H5Epush2(long stack_id, String file, String func, int line, long cls_id, long maj_id, long min_id, String msg) throws HDF5LibraryException, NullPointerException; @@ -2705,6 +4114,24 @@ public class H5 implements java.io.Serializable { { H5Ewalk2(stack_id, direction, func, client_data); } + /** + * H5Ewalk2 walks the error stack specified by estack_id for the current thread and calls the + * function specified in func for each error along the way. + * + * @param stack_id + * IN: Error stack identifier. + * @param direction + * IN: Direction in which the error stack is to be walked. + * @param func + * IN: Function to be called for each error encountered. + * @param client_data + * IN: Data to be passed with func. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - func is null. + **/ public synchronized static native void H5Ewalk2(long stack_id, long direction, H5E_walk_cb func, H5E_walk_t client_data) throws HDF5LibraryException, NullPointerException; @@ -2941,6 +4368,19 @@ public class H5 implements java.io.Serializable { private synchronized static native long _H5Fget_create_plist(long file_id) throws HDF5LibraryException; + /** + * H5Fget_filesize retrieves the file size of the HDF5 file. This function + * is called after an existing file is opened in order + * to learn the true size of the underlying file. + * + * @param file_id + * IN: File identifier for a currently-open HDF5 file + * + * @return the file size of the HDF5 file + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native long H5Fget_filesize(long file_id) throws HDF5LibraryException; /** @@ -3093,6 +4533,7 @@ public class H5 implements java.io.Serializable { * * @deprecated As of HDF5 1.10.5 in favor of H5Fis_accessible. **/ + @Deprecated public synchronized static native boolean H5Fis_hdf5(String name) throws HDF5LibraryException, NullPointerException; /** @@ -3136,7 +4577,7 @@ public class H5 implements java.io.Serializable { throws HDF5LibraryException, NullPointerException; /** - * Given a mount point, H5Funmount dissassociates the mount point's file from the file mounted there. + * Given a mount point, H5Funmount disassociates the mount point's file from the file mounted there. * * @param loc_id * The identifier for the location at which the specified file is to be unmounted. @@ -3569,8 +5010,8 @@ public class H5 implements java.io.Serializable { * OUT: Names of all objects under the group, name. * @param objTypes * OUT: Types of all objects under the group, name. - * @param objRef - * OUT: Reference number of all objects under the group, name. + * @param tokens + * OUT: Object token of all objects under the group, name. * * @return the number of items found * @@ -3580,48 +5021,129 @@ public class H5 implements java.io.Serializable { * - name is null. */ public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] objNames, int[] objTypes, - long[] objRef) throws HDF5LibraryException, NullPointerException { + H5O_token_t[] tokens) throws HDF5LibraryException, NullPointerException { if (objNames == null) { throw new NullPointerException("H5Gget_obj_info_all(): name array is null"); } - return H5Gget_obj_info_all(loc_id, name, objNames, objTypes, null, null, objRef, HDF5Constants.H5_INDEX_NAME); + return H5Gget_obj_info_all(loc_id, name, objNames, objTypes, null, null, tokens, HDF5Constants.H5_INDEX_NAME); } - public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] oname, int[] otype, - int[] ltype, long[] ref, int indx_type) throws HDF5LibraryException, NullPointerException { - return H5Gget_obj_info_full(loc_id, name, oname, otype, ltype, null, ref, indx_type, -1); + /** + * retrieves information of all objects under the group (name) located in the file or group specified by loc_id. + * + * @param loc_id + * IN: File or group identifier + * @param name + * IN: Name of group for which information is to be retrieved + * @param objNames + * OUT: Names of all objects under the group, name. + * @param objTypes + * OUT: Types of all objects under the group, name. + * @param ltype + * OUT: Link type + * @param tokens + * OUT: Object token of all objects under the group, name. + * @param indx_type + * IN: Index type for iterate + * + * @return the number of items found + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + */ + public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] objNames, int[] objTypes, + int[] ltype, H5O_token_t[] tokens, int indx_type) throws HDF5LibraryException, NullPointerException { + return H5Gget_obj_info_full(loc_id, name, objNames, objTypes, ltype, null, tokens, indx_type, -1); } - public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] oname, int[] otype, - int[] ltype, long[] fno, long[] ref, int indx_type) throws HDF5LibraryException, NullPointerException { - return H5Gget_obj_info_full(loc_id, name, oname, otype, ltype, fno, ref, oname.length, indx_type, -1); + /** + * retrieves information of all objects under the group (name) located in the file or group specified by loc_id. + * + * @param loc_id + * IN: File or group identifier + * @param name + * IN: Name of group for which information is to be retrieved + * @param objNames + * OUT: Names of all objects under the group, name. + * @param objTypes + * OUT: Types of all objects under the group, name. + * @param ltype + * OUT: Link type + * @param fno + * OUT: File number + * @param tokens + * OUT: Object token of all objects under the group, name. + * @param indx_type + * IN: Index type for iterate + * + * @return the number of items found + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + */ + public synchronized static int H5Gget_obj_info_all(long loc_id, String name, String[] objNames, int[] objTypes, + int[] ltype, long[] fno, H5O_token_t[] tokens, int indx_type) throws HDF5LibraryException, NullPointerException { + return H5Gget_obj_info_full(loc_id, name, objNames, objTypes, ltype, fno, tokens, indx_type, -1); } - public synchronized static int H5Gget_obj_info_full(long loc_id, String name, String[] oname, int[] otype, - int[] ltype, long[] fno, long[] ref, int indx_type, int indx_order) throws HDF5LibraryException, + /** + * retrieves information of all objects under the group (name) located in the file or group specified by loc_id. + * + * @param loc_id + * IN: File or group identifier + * @param name + * IN: Name of group for which information is to be retrieved + * @param objNames + * OUT: Names of all objects under the group, name. + * @param objTypes + * OUT: Types of all objects under the group, name. + * @param ltype + * OUT: Link type + * @param fno + * OUT: File number + * @param tokens + * OUT: Object token of all objects under the group, name. + * @param indx_type + * IN: Index type for iterate + * @param indx_order + * IN: Index order for iterate + * + * @return the number of items found + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + */ + public synchronized static int H5Gget_obj_info_full(long loc_id, String name, String[] objNames, int[] objTypes, + int[] ltype, long[] fno, H5O_token_t[] tokens, int indx_type, int indx_order) throws HDF5LibraryException, NullPointerException { - if (oname == null) { + if (objNames == null) { throw new NullPointerException("H5Gget_obj_info_full(): name array is null"); } - if (otype == null) { + if (objTypes == null) { throw new NullPointerException("H5Gget_obj_info_full(): object type array is null"); } - if (oname.length == 0) { + if (objNames.length == 0) { throw new HDF5LibraryException("H5Gget_obj_info_full(): array size is zero"); } - if (oname.length != otype.length) { + if (objNames.length != objTypes.length) { throw new HDF5LibraryException("H5Gget_obj_info_full(): name and type array sizes are different"); } if (ltype == null) - ltype = new int[otype.length]; + ltype = new int[objTypes.length]; if (fno == null) - fno = new long[ref.length]; + fno = new long[tokens.length]; if (indx_type < 0) indx_type = HDF5Constants.H5_INDEX_NAME; @@ -3629,16 +5151,16 @@ public class H5 implements java.io.Serializable { if (indx_order < 0) indx_order = HDF5Constants.H5_ITER_INC; - log.trace("H5Gget_obj_info_full: oname_len={}", oname.length); - int status = H5Gget_obj_info_full(loc_id, name, oname, otype, ltype, fno, ref, oname.length, indx_type, + log.trace("H5Gget_obj_info_full: objNames_len={}", objNames.length); + int status = H5Gget_obj_info_full(loc_id, name, objNames, objTypes, ltype, fno, tokens, objNames.length, indx_type, indx_order); - for (int indx = 0; indx < oname.length; indx++) - log.trace("H5Gget_obj_info_full: oname={}", oname[indx]); + for (int indx = 0; indx < objNames.length; indx++) + log.trace("H5Gget_obj_info_full: objNames={}", objNames[indx]); return status; } - private synchronized static native int H5Gget_obj_info_full(long loc_id, String name, String[] oname, int[] otype, - int[] ltype, long[] fno, long[] ref, int n, int indx_type, int indx_order) throws HDF5LibraryException, + private synchronized static native int H5Gget_obj_info_full(long loc_id, String name, String[] objNames, int[] objTypes, + int[] ltype, long[] fno, H5O_token_t[] tokens, int n, int indx_type, int indx_order) throws HDF5LibraryException, NullPointerException; /** @@ -3653,9 +5175,9 @@ public class H5 implements java.io.Serializable { * @param idx * IN: the index of the object to iterate. * @param oname - * the name of the object [OUT] + * OUT: the name of the object * @param type - * the type of the object [OUT] + * OUT: the type of the object * * @return non-negative if successful, -1 if not. * @@ -3683,7 +5205,7 @@ public class H5 implements java.io.Serializable { */ /** * retrieves information of all objects (recurvisely) under the group (name) located in the file or group specified - * by loc_id upto maximum specified by objMax. + * by loc_id up to maximum specified by objMax. * * @param loc_id * IN: File or group identifier @@ -3693,8 +5215,8 @@ public class H5 implements java.io.Serializable { * OUT: Types of all objects under the group, name. * @param lnkTypes * OUT: Types of all links under the group, name. - * @param objRef - * OUT: Reference number of all objects under the group, name. + * @param objToken + * OUT: Object token of all objects under the group, name. * @param objMax * IN: Maximum number of all objects under the group, name. * @@ -3706,7 +5228,7 @@ public class H5 implements java.io.Serializable { * - name is null. */ public synchronized static int H5Gget_obj_info_max(long loc_id, String[] objNames, int[] objTypes, int[] lnkTypes, - long[] objRef, long objMax) throws HDF5LibraryException, NullPointerException { + H5O_token_t[] objToken, long objMax) throws HDF5LibraryException, NullPointerException { if (objNames == null) { throw new NullPointerException("H5Gget_obj_info_max(): name array is null"); } @@ -3731,11 +5253,11 @@ public class H5 implements java.io.Serializable { throw new HDF5LibraryException("H5Gget_obj_info_max(): name and type array sizes are different"); } - return H5Gget_obj_info_max(loc_id, objNames, objTypes, lnkTypes, objRef, objMax, objNames.length); + return H5Gget_obj_info_max(loc_id, objNames, objTypes, lnkTypes, objToken, objMax, objNames.length); } private synchronized static native int H5Gget_obj_info_max(long loc_id, String[] oname, int[] otype, int[] ltype, - long[] ref, long amax, int n) throws HDF5LibraryException, NullPointerException; + H5O_token_t[] tokens, long amax, int n) throws HDF5LibraryException, NullPointerException; /** * H5Gn_members report the number of objects in a Group. The 'objects' include everything that will be visited by @@ -3856,13 +5378,40 @@ public class H5 implements java.io.Serializable { // // // //////////////////////////////////////////////////////////// + /** + * H5Iget_file_id obtains the file ID specified by the identifier, obj_id. + * + * @param obj_id + * IN: Identifier of the object. + * + * @return the file ID. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native long H5Iget_file_id(long obj_id) throws HDF5LibraryException; + /** + * H5Iget_name_long retrieves the name of an object specified by the identifier, obj_id. + * @deprecated + * + * @param obj_id + * IN: Identifier of the object. + * @param name + * OUT: Attribute name buffer. + * @param size + * IN: Maximum length of the name to retrieve. + * + * @return the length of the name retrieved. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ @Deprecated public synchronized static native long H5Iget_name_long(long obj_id, String[] name, long size) throws HDF5LibraryException, NullPointerException; /** - * H5Iget_name_str retrieves the name of an object specified by the identifier, obj_id. + * H5Iget_name retrieves the name of an object specified by the identifier, obj_id. * * @param obj_id * IN: Identifier of the object. @@ -3875,10 +5424,44 @@ public class H5 implements java.io.Serializable { public synchronized static native String H5Iget_name(long obj_id) throws HDF5LibraryException; + /** + * H5Iget_ref obtains the number of references outstanding specified by the identifier, obj_id. + * + * @param obj_id + * IN: Identifier of the object. + * + * @return the reference count. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native int H5Iget_ref(long obj_id) throws HDF5LibraryException, NullPointerException; + /** + * H5Idec_ref decrements the reference count specified by the identifier, obj_id. + * If the reference count for an ID reaches zero, the object will be closed. + * + * @param obj_id + * IN: Identifier of the object. + * + * @return the reference count. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native int H5Idec_ref(long obj_id) throws HDF5LibraryException, NullPointerException; + /** + * H5Iinc_ref increments the reference count specified by the identifier, obj_id. + * + * @param obj_id + * IN: Identifier of the object. + * + * @return the reference count. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native int H5Iinc_ref(long obj_id) throws HDF5LibraryException, NullPointerException; /** @@ -4332,8 +5915,8 @@ public class H5 implements java.io.Serializable { * @exception HDF5LibraryException * - Error from the HDF-5 Library. **/ - public synchronized static native int H5Literate(long grp_id, int idx_type, int order, long idx, H5L_iterate_cb op, - H5L_iterate_t op_data) throws HDF5LibraryException; + public synchronized static native int H5Literate(long grp_id, int idx_type, int order, long idx, H5L_iterate_t op, + H5L_iterate_opdata_t op_data) throws HDF5LibraryException; /** * H5Literate_by_name iterates through links in a group. @@ -4364,7 +5947,7 @@ public class H5 implements java.io.Serializable { * - group_name is null. **/ public synchronized static native int H5Literate_by_name(long grp_id, String group_name, int idx_type, int order, - long idx, H5L_iterate_cb op, H5L_iterate_t op_data, long lapl_id) throws HDF5LibraryException, + long idx, H5L_iterate_t op, H5L_iterate_opdata_t op_data, long lapl_id) throws HDF5LibraryException, NullPointerException; /** @@ -4411,8 +5994,8 @@ public class H5 implements java.io.Serializable { * @exception HDF5LibraryException * - Error from the HDF-5 Library. **/ - public synchronized static native int H5Lvisit(long grp_id, int idx_type, int order, H5L_iterate_cb op, - H5L_iterate_t op_data) throws HDF5LibraryException; + public synchronized static native int H5Lvisit(long grp_id, int idx_type, int order, H5L_iterate_t op, + H5L_iterate_opdata_t op_data) throws HDF5LibraryException; /** * H5Lvisit_by_name recursively visits all links starting from a specified group. @@ -4441,7 +6024,7 @@ public class H5 implements java.io.Serializable { * - group_name is null. **/ public synchronized static native int H5Lvisit_by_name(long loc_id, String group_name, int idx_type, int order, - H5L_iterate_cb op, H5L_iterate_t op_data, long lapl_id) throws HDF5LibraryException, NullPointerException; + H5L_iterate_t op, H5L_iterate_opdata_t op_data, long lapl_id) throws HDF5LibraryException, NullPointerException; /** @@ -4658,6 +6241,52 @@ public class H5 implements java.io.Serializable { NullPointerException; /** + * H5Oget_info_by_name retrieves the metadata for an object, identifying the object by location and relative name. + * + * @param loc_id + * IN: File or group identifier specifying location of group in which object is located + * @param name + * IN: Relative name of group + * @param lapl_id + * IN: Access property list identifier for the link pointing to the object (Not currently used; pass as + * H5P_DEFAULT.) + * + * @return object information + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ + public static H5O_info_t H5Oget_info_by_name(long loc_id, String name, long lapl_id) + throws HDF5LibraryException, NullPointerException { + return H5Oget_info_by_name(loc_id, name, HDF5Constants.H5O_INFO_ALL, lapl_id); + } + + /** + * H5Oget_info_by_name retrieves the metadata for an object, identifying the object by location and relative name. + * + * @param loc_id + * IN: File or group identifier specifying location of group in which object is located + * @param name + * IN: Relative name of group + * @param fields + * IN: Object fields to select + * @param lapl_id + * IN: Access property list identifier for the link pointing to the object (Not currently used; pass as + * H5P_DEFAULT.) + * + * @return object information + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ + public synchronized static native H5O_info_t H5Oget_info_by_name(long loc_id, String name, int fields, long lapl_id) + throws HDF5LibraryException, NullPointerException; + + /** * H5Oget_info_by_idx retrieves the metadata for an object, identifying the object by an index position. * * @param loc_id @@ -4716,7 +6345,47 @@ public class H5 implements java.io.Serializable { int order, long n, int fields, long lapl_id) throws HDF5LibraryException, NullPointerException; /** - * H5Oget_info_by_name retrieves the metadata for an object, identifying the object by location and relative name. + * H5Oget_native_info retrieves the native HDF5-specific metadata for an HDF5 object specified by an identifier. + * Native HDF5-specific metadata includes things like object header information and object storage layout information. + * + * @param loc_id + * IN: Identifier for target object + * + * @return object information + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ + public static H5O_native_info_t H5Oget_native_info(long loc_id) throws HDF5LibraryException, + NullPointerException { + return H5Oget_native_info(loc_id, HDF5Constants.H5O_NATIVE_INFO_ALL); + } + + /** + * H5Oget_native_info retrieves the native HDF5-specific metadata for an HDF5 object specified by an identifier. + * Native HDF5-specific metadata includes things like object header information and object storage layout information. + * + * @param loc_id + * IN: Identifier for target object + * @param fields + * IN: Object fields to select + * + * @return object information + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ + public synchronized static native H5O_native_info_t H5Oget_native_info(long loc_id, int fields) throws HDF5LibraryException, + NullPointerException; + + /** + * H5Oget_native_info_by_name retrieves the native HDF5-specific metadata for an HDF5 object, identifying the object + * by location and relative name. Native HDF5-specific metadata includes things like object header information and + * object storage layout information. * * @param loc_id * IN: File or group identifier specifying location of group in which object is located @@ -4733,13 +6402,15 @@ public class H5 implements java.io.Serializable { * @exception NullPointerException * - name is null. **/ - public static H5O_info_t H5Oget_info_by_name(long loc_id, String name, long lapl_id) + public static H5O_native_info_t H5Oget_native_info_by_name(long loc_id, String name, long lapl_id) throws HDF5LibraryException, NullPointerException { - return H5Oget_info_by_name(loc_id, name, HDF5Constants.H5O_INFO_ALL, lapl_id); + return H5Oget_native_info_by_name(loc_id, name, HDF5Constants.H5O_NATIVE_INFO_ALL, lapl_id); } /** - * H5Oget_info_by_name retrieves the metadata for an object, identifying the object by location and relative name. + * H5Oget_native_info_by_name retrieves the native HDF5-specific metadata for an HDF5 object, identifying the object + * by location and relative name. Native HDF5-specific metadata includes things like object header information and + * object storage layout information. * * @param loc_id * IN: File or group identifier specifying location of group in which object is located @@ -4758,10 +6429,72 @@ public class H5 implements java.io.Serializable { * @exception NullPointerException * - name is null. **/ - public synchronized static native H5O_info_t H5Oget_info_by_name(long loc_id, String name, int fields, long lapl_id) + public synchronized static native H5O_native_info_t H5Oget_native_info_by_name(long loc_id, String name, int fields, long lapl_id) throws HDF5LibraryException, NullPointerException; /** + * H5Oget_native_info_by_idx retrieves the native HDF5-specific metadata for an HDF5 object, identifying the object + * by an index position. Native HDF5-specific metadata includes things like object header information and + * object storage layout information. + * + * @param loc_id + * IN: File or group identifier + * @param group_name + * IN: Name of group, relative to loc_id, in which object is located + * @param idx_type + * IN: Type of index by which objects are ordered + * @param order + * IN: Order of iteration within index + * @param n + * IN: Object to open + * @param lapl_id + * IN: Access property list identifier for the link pointing to the object (Not currently used; pass as + * H5P_DEFAULT.) + * + * @return object information + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ + public static H5O_native_info_t H5Oget_native_info_by_idx(long loc_id, String group_name, int idx_type, + int order, long n, long lapl_id) throws HDF5LibraryException, NullPointerException { + return H5Oget_native_info_by_idx(loc_id, group_name, idx_type, order, n, HDF5Constants.H5O_NATIVE_INFO_ALL, lapl_id); + } + + /** + * H5Oget_native_info_by_idx retrieves the native HDF5-specific metadata for an HDF5 object, identifying the object + * by an index position. Native HDF5-specific metadata includes things like object header information and + * object storage layout information. + * + * @param loc_id + * IN: File or group identifier + * @param group_name + * IN: Name of group, relative to loc_id, in which object is located + * @param idx_type + * IN: Type of index by which objects are ordered + * @param order + * IN: Order of iteration within index + * @param n + * IN: Object to open + * @param fields + * IN: Object fields to select + * @param lapl_id + * IN: Access property list identifier for the link pointing to the object (Not currently used; pass as + * H5P_DEFAULT.) + * + * @return object information + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ + public synchronized static native H5O_native_info_t H5Oget_native_info_by_idx(long loc_id, String group_name, int idx_type, + int order, long n, int fields, long lapl_id) throws HDF5LibraryException, NullPointerException; + + /** * H5Olink creates a new hard link to an object in an HDF5 file. * * @param obj_id @@ -4835,7 +6568,7 @@ public class H5 implements java.io.Serializable { * @exception NullPointerException * - name is null. **/ - public static int H5Ovisit(long obj_id, int idx_type, int order, H5O_iterate_cb op, H5O_iterate_t op_data) + public static int H5Ovisit(long obj_id, int idx_type, int order, H5O_iterate_t op, H5O_iterate_opdata_t op_data) throws HDF5LibraryException, NullPointerException { return H5Ovisit(obj_id, idx_type, order, op, op_data, HDF5Constants.H5O_INFO_ALL); } @@ -4864,8 +6597,8 @@ public class H5 implements java.io.Serializable { * @exception NullPointerException * - name is null. **/ - public synchronized static native int H5Ovisit(long obj_id, int idx_type, int order, H5O_iterate_cb op, - H5O_iterate_t op_data, int fields) throws HDF5LibraryException, NullPointerException; + public synchronized static native int H5Ovisit(long obj_id, int idx_type, int order, H5O_iterate_t op, + H5O_iterate_opdata_t op_data, int fields) throws HDF5LibraryException, NullPointerException; /** * H5Ovisit_by_name recursively visits all objects starting from a specified object. @@ -4894,7 +6627,7 @@ public class H5 implements java.io.Serializable { * - name is null. **/ public static int H5Ovisit_by_name(long loc_id, String obj_name, int idx_type, int order, - H5O_iterate_cb op, H5O_iterate_t op_data, long lapl_id) throws HDF5LibraryException, NullPointerException { + H5O_iterate_t op, H5O_iterate_opdata_t op_data, long lapl_id) throws HDF5LibraryException, NullPointerException { return H5Ovisit_by_name(loc_id, obj_name, idx_type, order, op, op_data, HDF5Constants.H5O_INFO_ALL, lapl_id); } @@ -4927,7 +6660,7 @@ public class H5 implements java.io.Serializable { * - name is null. **/ public synchronized static native int H5Ovisit_by_name(long loc_id, String obj_name, int idx_type, int order, - H5O_iterate_cb op, H5O_iterate_t op_data, int fields, long lapl_id) throws HDF5LibraryException, NullPointerException; + H5O_iterate_t op, H5O_iterate_opdata_t op_data, int fields, long lapl_id) throws HDF5LibraryException, NullPointerException; /** @@ -4969,26 +6702,28 @@ public class H5 implements java.io.Serializable { public synchronized static native void H5Oincr_refcount(long object_id) throws HDF5LibraryException; /** - * H5Oopen_by_addr opens a group, dataset, or named datatype using its address within an HDF5 file. + * H5Oopen_by_token opens a group, dataset, or named datatype using its object token within an HDF5 file. * * @param loc_id IN: File or group identifier - * @param addr IN: Object's address in the file + * @param token IN: Object's token in the file * * @return an object identifier for the opened object * * @exception HDF5LibraryException - Error from the HDF-5 Library. **/ - public static long H5Oopen_by_addr(long loc_id, long addr) throws HDF5LibraryException { - long id = _H5Oopen_by_addr(loc_id, addr); + public static long H5Oopen_by_token(long loc_id, H5O_token_t token) throws HDF5LibraryException { + long id = _H5Oopen_by_token(loc_id, token); + if (id > 0) { - log.trace("OPEN_IDS: H5Oopen_by_addr add {}", id); + log.trace("OPEN_IDS: H5Oopen_by_token add {}", id); OPEN_IDS.add(id); log.trace("OPEN_IDS: {}", OPEN_IDS.size()); } + return id; } - private synchronized static native long _H5Oopen_by_addr(long loc_id, long addr) + private synchronized static native long _H5Oopen_by_token(long loc_id, H5O_token_t token) throws HDF5LibraryException, NullPointerException; /** @@ -5017,7 +6752,7 @@ public class H5 implements java.io.Serializable { return id; } - public synchronized static native long _H5Oopen_by_idx(long loc_id, String group_name, + private synchronized static native long _H5Oopen_by_idx(long loc_id, String group_name, int idx_type, int order, long n, long lapl_id) throws HDF5LibraryException, NullPointerException; /** @@ -5048,10 +6783,38 @@ public class H5 implements java.io.Serializable { **/ public synchronized static native void H5Orefresh(long object_id) throws HDF5LibraryException; + /** + * H5Odisable_mdc_flushes corks an object, keeping dirty entries associated with the object in the metadata cache. + * + * @param object_id + * IN: Identifier of the object to be corked. + **/ public synchronized static native void H5Odisable_mdc_flushes(long object_id); + /** + * H5Oenable_mdc_flushes uncorks an object, keeping dirty entries associated with the object in the metadata cache. + * + * @param object_id + * IN: Identifier of the object to be uncorked. + **/ public synchronized static native void H5Oenable_mdc_flushes(long object_id); + /** + * H5Oare_mdc_flushes_disabled retrieve the object's "cork" status. + * + * @param object_id + * IN: Identifier of the object to be flushed. + * + * @return the cork status + * TRUE if mdc flushes for the object is disabled + * FALSE if mdc flushes for the object is not disabled + **/ public synchronized static native boolean H5Oare_mdc_flushes_disabled(long object_id); + // /////// unimplemented //////// + // herr_t H5Otoken_cmp(hid_t loc_id, const H5O_token_t *token1, const H5O_token_t *token2, + // int *cmp_value); + // herr_t H5Otoken_to_str(hid_t loc_id, const H5O_token_t *token, char **token_str); + // herr_t H5Otoken_from_str(hid_t loc_id, const char *token_str, H5O_token_t *token); + // //////////////////////////////////////////////////////////// // // // H5P: Property List Interface Functions // @@ -5196,6 +6959,7 @@ public class H5 implements java.io.Serializable { * IN: First property object to be compared * @param plid2 * IN: Second property object to be compared + * * @return positive value if equal; zero if unequal, a negative value if failed * * @exception HDF5LibraryException @@ -5203,6 +6967,19 @@ public class H5 implements java.io.Serializable { */ public synchronized static native int H5Pequal(long plid1, long plid2) throws HDF5LibraryException; + /** + * H5Pequal determines if two property lists or classes are equal + * + * @param plid1 + * IN: First property object to be compared + * @param plid2 + * IN: Second property object to be compared + * + * @return TRUE if equal, FALSE if unequal + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + */ public static boolean H5P_equal(long plid1, long plid2) throws HDF5LibraryException { if (H5Pequal(plid1, plid2) == 1) return true; @@ -5288,7 +7065,7 @@ public class H5 implements java.io.Serializable { return _H5Pclose_class(plid); } - public synchronized static native int _H5Pclose_class(long plid) throws HDF5LibraryException; + private synchronized static native int _H5Pclose_class(long plid) throws HDF5LibraryException; /** * H5Pclose terminates access to a property list. @@ -5356,6 +7133,19 @@ public class H5 implements java.io.Serializable { // Define property list iteration function type // typedef herr_t (*H5P_iterate_t)(hid_t id, const char *name, void *iter_data); + /** + * H5Pcreate_class_nocb creates an new property class with no callback functions. + * + * @param parent_class + * IN: Identifier of the parent property class. + * @param name + * IN: Name of the property class. + * + * @return a property list identifier if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public static long H5Pcreate_class_nocb(long parent_class, String name) throws HDF5LibraryException { long id = _H5Pcreate_class_nocb(parent_class, name); if (id > 0) { @@ -5382,17 +7172,69 @@ public class H5 implements java.io.Serializable { // private synchronized static native long _H5Pcreate_class(long parent_class, String name, H5P_cls_create_func_cb create_op, H5P_cls_create_func_t create_data, // H5P_cls_copy_func_cb copy_op, H5P_cls_copy_func_t copy_data, H5P_cls_close_func_cb close_op, H5P_cls_close_func_t close_data) throws HDF5LibraryException; + /** + * H5Pregister2_nocb registers a property list with no callback functions. + * + * @param plist_class + * IN: Identifier of the property list. + * @param name + * IN: Name of the property. + * @param size + * IN: Size the property value. + * @param def_value + * IN: Default value of the property + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native void H5Pregister2_nocb(long plist_class, String name, long size, byte[] def_value) throws HDF5LibraryException; // public synchronized static native void H5Pregister2(long plist_class, String name, long size, byte[] def_value, H5P_prp_create_func_cb prp_create, H5P_prp_set_func_cb prp_set, // H5P_prp_get_func_cb prp_get, H5P_prp_delete_func_cb prp_delete, H5P_prp_copy_func_cb prp_copy, H5P_prp_compare_func_cb prp_cmp, H5P_prp_close_func_cb prp_close) throws HDF5LibraryException; + /** + * H5Pinsert2_nocb inserts a property list with no callback functions. + * + * @param plist + * IN: Identifier of the property list. + * @param name + * IN: Name of the property. + * @param size + * IN: Size the property value. + * @param value + * IN: Default value of the property + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native void H5Pinsert2_nocb(long plist, String name, long size, byte[] value) throws HDF5LibraryException; // public synchronized static native void H5Pinsert2(long plist, String name, long size, byte[] value, H5P_prp_set_func_cb prp_set, H5P_prp_get_func_cb prp_get, // H5P_prp_delete_func_cb prp_delete, H5P_prp_copy_func_cb prp_copy, H5P_prp_compare_func_cb prp_cmp, H5P_prp_close_func_cb prp_close) throws HDF5LibraryException; + /** + * H5Piterate iterates over the properties in a property list or class + * + * @param plist + * IN: ID of property object to iterate over + * @param idx + * IN/OUT: index of the property to begin with + * @param op + * IN: function to be called with each property iterated over. + * @param op_data + * IN: iteration data from user + * + * @return + * the return value of the last call to op if it was non-zero, + * zero if all properties have been processed + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - size is null. + * + **/ public synchronized static native int H5Piterate(long plist, int[] idx, H5P_iterate_cb op, H5P_iterate_t op_data) throws HDF5LibraryException; // /////// Object creation property list (OCPL) routines /////// @@ -5403,9 +7245,9 @@ public class H5 implements java.io.Serializable { * @param ocpl_id * IN: : Object (dataset or group) creation property list identifier * @param attributes - * The maximun and minimum no. of attributes to be stored. + * The maximum and minimum no. of attributes to be stored. * - * <pre> + * <pre> * attributes[0] = The maximum number of attributes to be stored in compact storage * attributes[1] = The minimum number of attributes to be stored in dense storage * </pre> @@ -5505,6 +7347,51 @@ public class H5 implements java.io.Serializable { public synchronized static native void H5Pset_obj_track_times(long ocpl_id, boolean track_times) throws HDF5LibraryException; + /** + * H5Pmodify_filter modifies the specified FILTER in the transient or permanent output filter pipeline + * depending on whether PLIST is a dataset creation or dataset + * transfer property list. The FLAGS argument specifies certain + * general properties of the filter and is documented below. + * The CD_VALUES is an array of CD_NELMTS integers which are + * auxiliary data for the filter. The integer values will be + * stored in the dataset object header as part of the filter + * information. + *<p> + * The FLAGS argument is a bit vector of the following fields: + *<p> + * H5Z_FLAG_OPTIONAL(0x0001) + * If this bit is set then the filter is optional. If the + * filter fails during an H5Dwrite() operation then the filter + * is just excluded from the pipeline for the chunk for which it + * failed; the filter will not participate in the pipeline + * during an H5Dread() of the chunk. If this bit is clear and + * the filter fails then the entire I/O operation fails. + * If this bit is set but encoding is disabled for a filter, + * attempting to write will generate an error. + *<p> + * Note: This function currently supports only the permanent filter + * pipeline. That is, PLIST_ID must be a dataset creation + * property list. + * + * @param plist + * IN: Property list identifier. + * @param filter + * IN: Filter to be modified to the pipeline. + * @param flags + * IN: Bit vector specifying certain general properties of the filter. + * @param cd_nelmts + * IN: Number of elements in cd_values + * @param cd_values + * IN: Auxiliary data for the filter. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name or an array is null. + * + **/ public synchronized static native int H5Pmodify_filter(long plist, long filter, int flags, long cd_nelmts, int[] cd_values) throws HDF5LibraryException, NullPointerException; @@ -5676,9 +7563,37 @@ public class H5 implements java.io.Serializable { throws HDF5LibraryException, NullPointerException; + /** + * H5Pall_filters_avail query to verify that all the filters set + * in the dataset creation property list are available currently. + * + * @param dcpl_id + * IN: Property list identifier. + * + * @return + * TRUE if all filters available + * FALSE if one or more filters not currently available. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native boolean H5Pall_filters_avail(long dcpl_id) throws HDF5LibraryException, NullPointerException; + /** + * H5Premove_filter deletes a filter from the dataset creation property list; + * deletes all filters if filter is H5Z_FILTER_NONE + * + * @param obj_id + * IN: Property list identifier. + * @param filter + * IN: Filter identifier. + * + * @return a non-negative value and the size of the user block; if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native int H5Premove_filter(long obj_id, long filter) throws HDF5LibraryException; /** @@ -5696,6 +7611,18 @@ public class H5 implements java.io.Serializable { **/ public synchronized static native int H5Pset_deflate(long plist, int level) throws HDF5LibraryException; + /** + * H5Pset_fletcher32 sets Fletcher32 checksum of EDC for a dataset creation + * property list or group creation property list. + * + * @param plist + * IN: Property list identifier. + * + * @return a non-negative value and the size of the user block; if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native int H5Pset_fletcher32(long plist) throws HDF5LibraryException, NullPointerException; @@ -6127,9 +8054,9 @@ public class H5 implements java.io.Serializable { * @exception HDF5LibraryException * - Error from the HDF-5 Library. * @exception NullPointerException - * - aligment array is null. + * - alignment array is null. * @exception IllegalArgumentException - * - aligment array is invalid. + * - alignment array is invalid. **/ public synchronized static native int H5Pget_alignment(long plist, long[] alignment) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; @@ -6166,11 +8093,35 @@ public class H5 implements java.io.Serializable { */ public synchronized static native long H5Pget_driver(long plid) throws HDF5LibraryException; - public synchronized static native long H5Pget_family_offset(long fapl_id) throws HDF5LibraryException, - NullPointerException; + /** + * H5Pget_family_offset gets offset for family driver. + * + * @param fapl_id + * IN: File access property list identifier + * + * @return the offset. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ + public synchronized static native long H5Pget_family_offset(long fapl_id) throws HDF5LibraryException; - public synchronized static native int H5Pset_family_offset(long fapl_id, long offset) throws HDF5LibraryException, - NullPointerException; + /** + * H5Pset_family_offset sets the offset for family driver. + * + * @param fapl_id + * IN: File access property list identifier + * @param offset + * IN: the offset value + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ + public synchronized static native int H5Pset_family_offset(long fapl_id, long offset) throws HDF5LibraryException; /** * Retrieves the maximum possible number of elements in the meta data cache and the maximum possible number of bytes @@ -6221,9 +8172,8 @@ public class H5 implements java.io.Serializable { double rdcc_w0) throws HDF5LibraryException; /** - * H5Pget_mdc_config gets the initial metadata cache configuration contained in a file access property list and - * loads it into the instance of H5AC_cache_config_t pointed to by the config_ptr parameter. This configuration is - * used when the file is opened. + * H5Pget_mdc_config gets the initial metadata cache configuration contained in a file access property list. + * This configuration is used when the file is opened. * * @param plist_id * IN: Identifier of the file access property list. @@ -6235,11 +8185,24 @@ public class H5 implements java.io.Serializable { **/ public synchronized static native H5AC_cache_config_t H5Pget_mdc_config(long plist_id) throws HDF5LibraryException; + /** + * H5Pset_mdc_config sets the initial metadata cache configuration contained in a file access property list and + * loads it into the instance of H5AC_cache_config_t pointed to by the config_ptr parameter. This configuration is + * used when the file is opened. + * + * @param plist_id + * IN: Identifier of the file access property list. + * @param config_ptr + * IN: H5AC_cache_config_t, the initial metadata cache configuration. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native void H5Pset_mdc_config(long plist_id, H5AC_cache_config_t config_ptr) throws HDF5LibraryException; /** - * H5Pget_gc_references Returns the current setting for the garbage collection refernces property from a file access + * H5Pget_gc_references Returns the current setting for the garbage collection references property from a file access * property list. * * @param fapl_id @@ -6269,10 +8232,35 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Pset_gc_references(long fapl_id, boolean gc_ref) throws HDF5LibraryException; - public synchronized static native int H5Pget_fclose_degree(long plist_id) throws HDF5LibraryException, + /** + * H5Pget_fclose_degree returns the degree for the file close behavior for a file access + * property list. + * + * @param fapl_id + * IN File access property list + * + * @return the degree for the file close behavior + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native int H5Pget_fclose_degree(long fapl_id) throws HDF5LibraryException, NullPointerException; - public synchronized static native int H5Pset_fclose_degree(long plist, int degree) throws HDF5LibraryException, + /** + * H5Pset_fclose_degree sets the degree for the file close behavior. + * + * @param fapl_id + * IN File access property list + * @param degree + * IN the degree for the file close behavior + * + * @return non-negative if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native int H5Pset_fclose_degree(long fapl_id, int degree) throws HDF5LibraryException, NullPointerException; /** @@ -6303,8 +8291,40 @@ public class H5 implements java.io.Serializable { **/ public synchronized static native void H5Pset_meta_block_size(long fapl_id, long size) throws HDF5LibraryException; + /** + * H5Pget_sieve_buf_size retrieves the current settings for the data sieve buffer size + * property from a file access property list. + * + * @param fapl_id + * IN: Identifier for property list to query. + * + * @return a non-negative value and the size of the user block; if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native long H5Pget_sieve_buf_size(long fapl_id) throws HDF5LibraryException; + /** + * H5Pset_sieve_buf_size Sets the maximum size of the data seive buffer used for file + * drivers which are capable of using data sieving. The data sieve + * buffer is used when performing I/O on datasets in the file. Using a + * buffer which is large anough to hold several pieces of the dataset + * being read in for hyperslab selections boosts performance by quite a + * bit. + * <p> + * The default value is set to 64KB, indicating that file I/O for raw data + * reads and writes will occur in at least 64KB blocks. Setting the value to 0 + * with this function will turn off the data sieving + * + * @param fapl_id + * IN: Identifier of property list to modify. + * @param size + * IN: maximum size of the data seive buffer. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native void H5Pset_sieve_buf_size(long fapl_id, long size) throws HDF5LibraryException; /** @@ -6519,6 +8539,55 @@ public class H5 implements java.io.Serializable { public synchronized static native void H5Pset_evict_on_close(long fapl_id, boolean evict_on_close) throws HDF5LibraryException; + /** + * H5Pget_use_file_locking retrieves whether we are using file locking. + * + * @param fapl_id + * IN: File access property list identifier + * + * @return indication if file locking is used. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ + public synchronized static native boolean H5Pget_use_file_locking(long fapl_id) + throws HDF5LibraryException; + + /** + * H5Pget_use_file_locking retrieves whether we ignore file locks when they are disabled. + * + * @param fapl_id + * IN: File access property list identifier + * + * @return indication if file locking is ignored. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ + public synchronized static native boolean H5Pget_ignore_disabled_file_locking(long fapl_id) + throws HDF5LibraryException; + + /** + * H5Pset_file_locking sets parameters related to file locking. + * + * @param fapl_id + * IN: File access property list identifier + * + * @param use_file_locking + * IN: Whether the library will use file locking when opening files (mainly for SWMR semantics). + * + * @param ignore_when_disabled + * IN: Whether file locking will be ignored when disabled on a file system (useful for Lustre). + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ + public synchronized static native void H5Pset_file_locking(long fapl_id, boolean use_file_locking, boolean ignore_when_disabled) + throws HDF5LibraryException; + // ///// unimplemented ///// // herr_t H5Pset_vol(hid_t plist_id, hid_t new_vol_id, const void *new_vol_info); // herr_t H5Pget_vol_id(hid_t plist_id, hid_t *vol_id); @@ -6599,6 +8668,25 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Pset_chunk(long plist, int ndims, byte[] dim) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; + /** + * H5Pset_chunk sets the size of the chunks used to store a chunked layout dataset. + * + * @param plist + * IN: Identifier for property list to query. + * @param ndims + * IN: The number of dimensions of each chunk. + * @param dim + * IN: An array containing the size of each chunk. + * + * @return a non-negative value if successful + * + * @exception HDF5Exception + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - dims array is null. + * @exception IllegalArgumentException + * - dims <=0 + **/ public synchronized static int H5Pset_chunk(long plist, int ndims, long[] dim) throws HDF5Exception, NullPointerException, IllegalArgumentException { if (dim == null) { @@ -6834,9 +8922,37 @@ public class H5 implements java.io.Serializable { **/ public synchronized static native int H5Pget_external_count(long plist) throws HDF5LibraryException; + /** + * H5Pset_szip Sets up the use of the szip filter. + * + * @param plist + * IN: Dataset creation property list identifier. + * @param options_mask + * IN: Bit vector specifying certain general properties of the filter. + * @param pixels_per_block + * IN: Number of pixels in blocks + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_szip(long plist, int options_mask, int pixels_per_block) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_shuffle Sets up the use of the shuffle filter. + * + * @param plist_id + * IN: Dataset creation property list identifier. + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_shuffle(long plist_id) throws HDF5LibraryException, NullPointerException; @@ -6964,20 +9080,91 @@ public class H5 implements java.io.Serializable { return retVal; } + /** + * H5Pset_fill_value checks if the fill value is defined for a dataset creation property list. + * + * @param plist_id + * IN: Property list identifier. + * @param status + * IN: The fill value setting: + * H5D_FILL_VALUE_UNDEFINED + * H5D_FILL_VALUE_DEFAULT + * H5D_FILL_VALUE_USER_DEFINED + * H5D_FILL_VALUE_ERROR + * + * @return a non-negative value if successful + * + * @exception HDF5Exception + * - Error converting data array + **/ public synchronized static native int H5Pfill_value_defined(long plist_id, int[] status) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_alloc_time Gets space allocation time for dataset during creation. + * + * @param plist_id + * IN: Dataset creation property list identifier. + * @param alloc_time + * OUT: allocation time. + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pget_alloc_time(long plist_id, int[] alloc_time) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_alloc_time Sets space allocation time for dataset during creation. + * + * @param plist_id + * IN: Dataset creation property list identifier. + * @param alloc_time + * IN: allocation time. + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_alloc_time(long plist_id, int alloc_time) throws HDF5LibraryException, NullPointerException; - public synchronized static native int H5Pget_fill_time(long plist_id, int[] fill_time) throws HDF5LibraryException, - NullPointerException; + /** + * H5Pset_fill_time Gets fill value writing time. + * + * @param plist_id + * IN: Dataset creation property list identifier. + * @param fill_time + * OUT: fill time. + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ + public synchronized static native int H5Pget_fill_time(long plist_id, int[] fill_time) throws HDF5LibraryException; - public synchronized static native int H5Pset_fill_time(long plist_id, int fill_time) throws HDF5LibraryException, - NullPointerException; + /** + * H5Pset_fill_time Sets the fill value writing time. + * + * @param plist_id + * IN: Dataset creation property list identifier. + * @param fill_time + * IN: fill time. + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ + public synchronized static native int H5Pset_fill_time(long plist_id, int fill_time) throws HDF5LibraryException; /** * H5Pset_chunk_opts Sets the edge chunk option in a dataset creation property list. @@ -7067,7 +9254,7 @@ public class H5 implements java.io.Serializable { * the raw data chunk cache on a per-datset basis. * * @param dapl_id - * IN: Identifier of the datset access property list. + * IN: Identifier of the dataset access property list. * @param rdcc_nslots * IN: Number of elements (objects) in the raw data chunk cache. * @param rdcc_nbytes @@ -7277,6 +9464,20 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Pget_buffer(long plist, byte[] tconv, byte[] bkg) throws HDF5LibraryException, IllegalArgumentException; + /** + * H5Pget_buffer_size gets type conversion and background buffer size, in bytes, if successful; + * otherwise 0 on failure. + * + * @param plist + * Identifier for the dataset transfer property list. + * + * @return buffer size, in bytes, if successful; otherwise 0 on failure + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception IllegalArgumentException + * - plist is invalid. + **/ public synchronized static native long H5Pget_buffer_size(long plist) throws HDF5LibraryException, IllegalArgumentException; @@ -7307,11 +9508,33 @@ public class H5 implements java.io.Serializable { public synchronized static native void H5Pset_buffer_size(long plist, long size) throws HDF5LibraryException, IllegalArgumentException; - public synchronized static native int H5Pget_edc_check(long plist) throws HDF5LibraryException, - NullPointerException; + /** + * H5Pget_edc_check gets the error-detecting algorithm in use. + * + * @param plist + * Identifier for the dataset transfer property list. + * + * @return the error-detecting algorithm + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native int H5Pget_edc_check(long plist) throws HDF5LibraryException; - public synchronized static native int H5Pset_edc_check(long plist, int check) throws HDF5LibraryException, - NullPointerException; + /** + * H5Pset_edc_check sets the error-detecting algorithm. + * + * @param plist + * Identifier for the dataset transfer property list. + * @param check + * the error-detecting algorithm to use. + * + * @return non-negative if succeed + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native int H5Pset_edc_check(long plist, int check) throws HDF5LibraryException; /** * H5Pget_btree_ratio Get the B-tree split ratios for a dataset transfer property list. @@ -7356,9 +9579,46 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Pset_btree_ratios(long plist_id, double left, double middle, double right) throws HDF5LibraryException; + /** + * H5Pget_hyper_vector_size reads values previously set with H5Pset_hyper_vector_size. + * + * @param dxpl_id + * IN: Dataset transfer property list identifier. + * @param vector_size + * OUT: hyper vector size. + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pget_hyper_vector_size(long dxpl_id, long[] vector_size) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_hyper_vector_size sets the number of + * "I/O vectors" (offset and length pairs) which are to be + * accumulated in memory before being issued to the lower levels + * of the library for reading or writing the actual data. + * Increasing the number should give better performance, but use + * more memory during hyperslab I/O. The vector size must be + * greater than 1. + *,p. + * The default is to use 1024 vectors for I/O during hyperslab + * reading/writing. + * + * @param dxpl_id + * IN: Dataset transfer property list identifier. + * @param vector_size + * IN: hyper vestor size. + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_hyper_vector_size(long dxpl_id, long vector_size) throws HDF5LibraryException, NullPointerException; @@ -7556,8 +9816,32 @@ public class H5 implements java.io.Serializable { // /////// String creation property list (STRCPL) routines /////// + /** + * H5Pget_char_encoding gets the character encoding of the string. + * + * @param plist_id + * IN: the property list identifier + * + * @return Returns the character encoding of the string. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pget_char_encoding(long plist_id) throws HDF5LibraryException; + /** + * H5Pset_char_encoding sets the character encoding of the string. + * + * @param plist_id + * IN: the property list identifier + * @param encoding + * IN: the character encoding of the string + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native void H5Pset_char_encoding(long plist_id, int encoding) throws HDF5LibraryException; @@ -7747,20 +10031,51 @@ public class H5 implements java.io.Serializable { // /////// file drivers property list routines /////// + /** + * H5Pget_fapl_core retrieve H5FD_CORE I/O settings. + * + * @param fapl_id + * IN: File access property list identifier + * @param increment + * OUT: how much to grow the memory each time + * @param backing_store + * OUT: write to file name on flush setting + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native void H5Pget_fapl_core(long fapl_id, long[] increment, boolean[] backing_store) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_fapl_core modifies the file access property list to use the H5FD_CORE driver. + * + * @param fapl_id + * IN: File access property list identifier + * @param increment + * IN: how much to grow the memory each time + * @param backing_store + * IN: write to file name on flush setting + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_fapl_core(long fapl_id, long increment, boolean backing_store) throws HDF5LibraryException, NullPointerException; /** - * H5Pget_fapl_direct Retrieve direct I/O settings. + * H5Pget_fapl_direct queries properties set by the H5Pset_fapl_direct. * * @param fapl_id * IN: File access property list identifier * @param info - * OUT: Returned property list information info[0] = alignment Required memory alignment boundary info[1] - * = block_size File system block size info[2] = cbuf_size Copy buffer size + * OUT: Returned property list information + * info[0] = increment -how much to grow the memory each time + * info[1] = backing_store - write to file name on flush setting * * @return a non-negative value if successful; otherwise returns a negative value. * @@ -7791,14 +10106,72 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Pset_fapl_direct(long fapl_id, long alignment, long block_size, long cbuf_size) throws HDF5LibraryException; + /** + * H5Pget_fapl_family Returns information about the family file access property list. + * + * @param fapl_id + * IN: File access property list identifier + * @param memb_size + * OUT: the size in bytes of each file member (used only when creating a new file) + * @param memb_fapl_id + * OUT: the file access property list to be used for each family member + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pget_fapl_family(long fapl_id, long[] memb_size, long[] memb_fapl_id) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_fapl_family Sets up use of the direct I/O driver. + * + * @param fapl_id + * IN: File access property list identifier + * @param memb_size + * IN: the size in bytes of each file member (used only when creating a new file) + * @param memb_fapl_id + * IN: the file access property list to be used for each family member + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_fapl_family(long fapl_id, long memb_size, long memb_fapl_id) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_fapl_hdfs Modify the file access property list to use the H5FD_HDFS driver. + * + * @param fapl_id + * IN: File access property list identifier + * @param fapl_conf + * IN: the properties of the hdfs driver + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_fapl_hdfs(long fapl_id, H5FD_hdfs_fapl_t fapl_conf) throws HDF5LibraryException, NullPointerException; + /** + * H5Pget_fapl_hdfs gets the properties hdfs I/O driver. + * + * @param fapl_id + * IN: File access property list identifier + * + * @return the properties of the hdfs driver. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native H5FD_hdfs_fapl_t H5Pget_fapl_hdfs(long fapl_id) throws HDF5LibraryException, NullPointerException; /** @@ -7876,17 +10249,99 @@ public class H5 implements java.io.Serializable { public synchronized static native void H5Pset_fapl_log(long fapl_id, String logfile, long flags, long buf_size) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_fapl_sec2 Sets up use of the sec2 I/O driver. + * + * @param fapl_id + * IN: File access property list identifier + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_fapl_sec2(long fapl_id) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_fapl_split Sets up use of the split I/O driver. Makes the multi driver act like the + * old split driver which stored meta data in one file and raw + * data in another file + * + * @param fapl_id + * IN: File access property list identifier + * @param meta_ext + * IN: meta filename extension + * @param meta_plist_id + * IN: File access property list identifier for metadata + * @param raw_ext + * IN: raw data filename extension + * @param raw_plist_id + * IN: File access property list identifier raw data + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native void H5Pset_fapl_split(long fapl_id, String meta_ext, long meta_plist_id, String raw_ext, long raw_plist_id) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_fapl_stdio Sets up use of the stdio I/O driver. + * + * @param fapl_id + * IN: File access property list identifier + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_fapl_stdio(long fapl_id) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_fapl_windows Sets up use of the windows I/O driver. + * + * @param fapl_id + * IN: File access property list identifier + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_fapl_windows(long fapl_id) throws HDF5LibraryException, NullPointerException; + /** + * H5Pset_fapl_ros3 Modify the file access property list to use the H5FD_ROS3 driver. + * + * @param fapl_id + * IN: File access property list identifier + * @param fapl_conf + * IN: the properties of the ros3 driver + * + * @return a non-negative value if successful; otherwise returns a negative value. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native int H5Pset_fapl_ros3(long fapl_id, H5FD_ros3_fapl_t fapl_conf) throws HDF5LibraryException, NullPointerException; + /** + * H5Pget_fapl_ros3 gets the properties of the ros3 I/O driver. + * + * @param fapl_id + * IN: File access property list identifier + * + * @return the properties of the ros3 driver. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * + **/ public synchronized static native H5FD_ros3_fapl_t H5Pget_fapl_ros3(long fapl_id) throws HDF5LibraryException, NullPointerException; // /////// unimplemented //////// @@ -8091,6 +10546,364 @@ public class H5 implements java.io.Serializable { // //////////////////////////////////////////////////////////// // // + // H5R: HDF5 1.12 Reference API Functions // + // // + // //////////////////////////////////////////////////////////// + + // Constructors // + + /** + * H5Rcreate_object creates a reference pointing to the object named name located at loc id. + * + * @param loc_id + * IN: Location identifier used to locate the object being pointed to. + * @param name + * IN: Name of object at location loc_id. + * @param access_id + * IN: Object access identifier to the object being pointed to. + * + * @return the reference (byte[]) if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - an input array is null. + * @exception IllegalArgumentException + * - an input array is invalid. + **/ + public synchronized static native byte[] H5Rcreate_object(long loc_id, String name, long access_id) + throws HDF5LibraryException, NullPointerException, IllegalArgumentException; + + /** + * H5Rcreate_region creates the reference, pointing to the region represented by + * space id within the object named name located at loc id. + * + * @param loc_id + * IN: Location identifier used to locate the object being pointed to. + * @param name + * IN: Name of object at location loc_id. + * @param space_id + * IN: Identifies the dataset region that a dataset region reference points to. + * @param access_id + * IN: Object access identifier to the object being pointed to. + * + * @return the reference (byte[]) if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - an input array is null. + * @exception IllegalArgumentException + * - an input array is invalid. + **/ + public synchronized static native byte[] H5Rcreate_region(long loc_id, String name, long space_id, long access_id) + throws HDF5LibraryException, NullPointerException, IllegalArgumentException; + + /** + * H5Rcreate_attr creates the reference, pointing to the attribute named attr name + * and attached to the object named name located at loc id. + * + * @param loc_id + * IN: Location identifier used to locate the object being pointed to. + * @param name + * IN: Name of object at location loc_id. + * @param attr_name + * IN: Name of the attribute within the object. + * @param access_id + * IN: Object access identifier to the object being pointed to. + * + * @return the reference (byte[]) if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - an input array is null. + * @exception IllegalArgumentException + * - an input array is invalid. + **/ + public synchronized static native byte[] H5Rcreate_attr(long loc_id, String name, String attr_name, long access_id) + throws HDF5LibraryException, NullPointerException, IllegalArgumentException; + + /** + * H5Rdestroy destroys a reference and releases resources. + * + * @param ref_ptr + * IN: Reference to an object, region or attribute attached to an object. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - an input array is null. + * @exception IllegalArgumentException + * - an input array is invalid. + **/ + public synchronized static native void H5Rdestroy(byte[] ref_ptr) + throws HDF5LibraryException, NullPointerException, IllegalArgumentException; + + // Info // + + /** + * H5Rget_type retrieves the type of a reference. + * + * @param ref_ptr + * IN: Reference to an object, region or attribute attached to an object. + * + * @return a valid reference type if successful; otherwise returns H5R UNKNOWN. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - an input array is null. + * @exception IllegalArgumentException + * - an input array is invalid. + **/ + public synchronized static native int H5Rget_type(byte[] ref_ptr) + throws HDF5LibraryException, NullPointerException, IllegalArgumentException; + + /** + * H5Requal determines whether two references point to the same object, region or attribute. + * + * @param ref1_ptr + * IN: Reference to an object, region or attribute attached to an object. + * @param ref2_ptr + * IN: Reference to an object, region or attribute attached to an object. + * + * @return true if equal, else false + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - an input array is null. + * @exception IllegalArgumentException + * - an input array is invalid. + **/ + public synchronized static native boolean H5Requal(byte[] ref1_ptr, byte[] ref2_ptr) + throws HDF5LibraryException, NullPointerException, IllegalArgumentException; + + /** + * H5Rcopy creates a copy of an existing reference. + * + * @param src_ref_ptr + * IN: Reference to an object, region or attribute attached to an object. + * + * @return a valid copy of the reference (byte[]) if successful. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - an input array is null. + * @exception IllegalArgumentException + * - an input array is invalid. + **/ + public synchronized static native byte[] H5Rcopy(byte[] src_ref_ptr) + throws HDF5LibraryException, NullPointerException, IllegalArgumentException; + + // Dereference // + + /** + * H5Ropen_object opens that object and returns an identifier. + * The object opened with this function should be closed when it is no longer needed + * so that resource leaks will not develop. Use the appropriate close function such + * as H5Oclose or H5Dclose for datasets. + * + * @param ref_ptr + * IN: Reference to an object, region or attribute attached to an object. + * @param rapl_id + * IN: A reference access property list identifier for the reference. The access property + * list can be used to access external files that the reference points + * to (through a file access property list). + * @param oapl_id + * IN: An object access property list identifier for the reference. The access property + * property list must be of the same type as the object being referenced, + * that is a group or dataset property list. + * + * @return a valid identifier if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - an input array is null. + * @exception IllegalArgumentException + * - an input array is invalid. + **/ + public static long H5Ropen_object(byte[] ref_ptr, long rapl_id, long oapl_id) + throws HDF5LibraryException, NullPointerException, IllegalArgumentException { + long id = _H5Ropen_object(ref_ptr, rapl_id, oapl_id); + if (id > 0) { + log.trace("OPEN_IDS: H5Ropen_object add {}", id); + OPEN_IDS.add(id); + log.trace("OPEN_IDS: {}", OPEN_IDS.size()); + } + return id; + } + + private synchronized static native long _H5Ropen_object(byte[] ref_ptr, long rapl_id, long oapl_id) + throws HDF5LibraryException, NullPointerException, IllegalArgumentException; + + /** + * H5Ropen region creates a copy of the dataspace of the dataset pointed to by a region reference, + * ref ptr, and defines a selection matching the selection pointed to by ref ptr within the dataspace copy. + * Use H5Sclose to release the dataspace identifier returned by this function when the identifier is no longer needed. + * + * @param ref_ptr + * IN: Reference to an object, region or attribute attached to an object. + * @param rapl_id + * IN: A reference access property list identifier for the reference. The access property + * list can be used to access external files that the reference points + * to (through a file access property list). + * @param oapl_id + * IN: An object access property list identifier for the reference. The access property + * property list must be of the same type as the object being referenced, + * that is a group or dataset property list. + * + * @return a valid dataspace identifier if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - an input array is null. + * @exception IllegalArgumentException + * - an input array is invalid. + **/ + public static long H5Ropen_region(byte[] ref_ptr, long rapl_id, long oapl_id) + throws HDF5LibraryException, NullPointerException, IllegalArgumentException { + long id = _H5Ropen_region(ref_ptr, rapl_id, oapl_id); + if (id > 0) { + log.trace("OPEN_IDS: H5Ropen_region add {}", id); + OPEN_IDS.add(id); + log.trace("OPEN_IDS: {}", OPEN_IDS.size()); + } + return id; + } + + private synchronized static native long _H5Ropen_region(byte[] ref_ptr, long rapl_id, long oapl_id) + throws HDF5LibraryException, NullPointerException, IllegalArgumentException; + + /** + * H5Ropen_attr opens the attribute attached to the object and returns an identifier. + * The attribute opened with this function should be closed with H5Aclose when it is no longer needed + * so that resource leaks will not develop. + * + * @param ref_ptr + * IN: Reference to an object, region or attribute attached to an object. + * @param rapl_id + * IN: A reference access property list identifier for the reference. The access property + * list can be used to access external files that the reference points + * to (through a file access property list). + * @param aapl_id + * IN: An attribute access property list identifier for the reference. The access property + * property list must be of the same type as the object being referenced, + * that is a group or dataset property list. + * + * @return a valid attribute identifier if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - an input array is null. + * @exception IllegalArgumentException + * - an input array is invalid. + **/ + public static long H5Ropen_attr(byte[] ref_ptr, long rapl_id, long aapl_id) + throws HDF5LibraryException, NullPointerException, IllegalArgumentException { + long id = _H5Ropen_attr(ref_ptr, rapl_id, aapl_id); + if (id > 0) { + log.trace("OPEN_IDS: H5Ropen_attr add {}", id); + OPEN_IDS.add(id); + log.trace("OPEN_IDS: {}", OPEN_IDS.size()); + } + return id; + } + + private synchronized static native long _H5Ropen_attr(byte[] ref_ptr, long rapl_id, long aapl_id) + throws HDF5LibraryException, NullPointerException, IllegalArgumentException; + + // Get type // + + /** + * H5Rget obj type3 retrieves the type of the referenced object pointed to. + * + * @param ref_ptr + * IN: Reference to an object, region or attribute attached to an object. + * @param rapl_id + * IN: A reference access property list identifier for the reference. The access property + * list can be used to access external files that the reference points + * to (through a file access property list). + * + * @return Returns the object type + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - array is null. + * @exception IllegalArgumentException + * - array is invalid. + **/ + public synchronized static native int H5Rget_obj_type3(byte[] ref_ptr, long rapl_id) + throws HDF5LibraryException, NullPointerException, IllegalArgumentException; + + // Get name // + + /** + * H5Rget_file_name retrieves the file name for the object, region or attribute reference pointed to. + * + * @param ref_ptr + * IN: Reference to an object, region or attribute attached to an object. + * + * @return Returns the file name of the reference + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - array is null. + * @exception IllegalArgumentException + * - array is invalid. + **/ + public synchronized static native String H5Rget_file_name(byte[] ref_ptr) + throws HDF5LibraryException, NullPointerException, IllegalArgumentException; + + /** + * H5Rget_obj_name retrieves the object name for the object, region or attribute reference pointed to. + * + * @param ref_ptr + * IN: Reference to an object, region or attribute attached to an object. + * @param rapl_id + * IN: A reference access property list identifier for the reference. The access property + * list can be used to access external files that the reference points + * to (through a file access property list). + * + * @return Returns the object name of the reference + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - array is null. + * @exception IllegalArgumentException + * - array is invalid. + **/ + public synchronized static native String H5Rget_obj_name(byte[] ref_ptr, long rapl_id) + throws HDF5LibraryException, NullPointerException, IllegalArgumentException; + + /** + * H5Rget_attr_name retrieves the attribute name for the object, region or attribute reference pointed to. + * + * @param ref_ptr + * IN: Reference to an object, region or attribute attached to an object. + * + * @return Returns the attribute name of the reference + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - array is null. + * @exception IllegalArgumentException + * - array is invalid. + **/ + public synchronized static native String H5Rget_attr_name(byte[] ref_ptr) + throws HDF5LibraryException, NullPointerException, IllegalArgumentException; + + // //////////////////////////////////////////////////////////// + // // // H5R: HDF5 1.8 Reference API Functions // // // // //////////////////////////////////////////////////////////// @@ -8269,50 +11082,7 @@ public class H5 implements java.io.Serializable { // // // //////////////////////////////////////////////////////////// - /** - * H5Sclose releases a dataspace. - * - * @param space_id - * Identifier of dataspace to release. - * - * @return a non-negative value if successful - * - * @exception HDF5LibraryException - * - Error from the HDF-5 Library. - **/ - public static int H5Sclose(long space_id) throws HDF5LibraryException { - if (space_id < 0) - return 0; // throw new HDF5LibraryException("Negative ID");; - - log.trace("OPEN_IDS: H5Sclose remove {}", space_id); - OPEN_IDS.remove(space_id); - log.trace("OPEN_IDS: {}", OPEN_IDS.size()); - return _H5Sclose(space_id); - } - - private synchronized static native int _H5Sclose(long space_id) throws HDF5LibraryException; - - /** - * H5Scopy creates a new dataspace which is an exact copy of the dataspace identified by space_id. - * - * @param space_id - * Identifier of dataspace to copy. - * @return a dataspace identifier if successful - * - * @exception HDF5LibraryException - * - Error from the HDF-5 Library. - **/ - public static long H5Scopy(long space_id) throws HDF5LibraryException { - long id = _H5Scopy(space_id); - if (id > 0) { - log.trace("OPEN_IDS: H5Scopy add {}", id); - OPEN_IDS.add(id); - log.trace("OPEN_IDS: {}", OPEN_IDS.size()); - } - return id; - } - - private synchronized static native long _H5Scopy(long space_id) throws HDF5LibraryException; + /**************** Operations on dataspaces ********************/ /** * H5Screate creates a new dataspace of a particular type. @@ -8369,19 +11139,96 @@ public class H5 implements java.io.Serializable { throws HDF5Exception, NullPointerException; /** - * H5Sdecode reconstructs the HDF5 data space object and returns a new object handle for it. + * H5Sset_extent_simple sets or resets the size of an existing dataspace. * - * @param buf - * IN: Buffer for the data space object to be decoded. + * @param space_id + * Dataspace identifier. + * @param rank + * Rank, or dimensionality, of the dataspace. + * @param current_size + * Array containing current size of dataspace. + * @param maximum_size + * Array containing maximum size of dataspace. * - * @return a new object handle + * @return a dataspace identifier if successful * * @exception HDF5LibraryException * - Error from the HDF-5 Library. - * @exception NullPointerException - * - buf is null. **/ - public synchronized static native long H5Sdecode(byte[] buf) throws HDF5LibraryException, NullPointerException; + public synchronized static native long H5Sset_extent_simple(long space_id, int rank, long[] current_size, + long[] maximum_size) throws HDF5LibraryException, NullPointerException; + + /** + * H5Sset_extent_simple sets or resets the size of an existing dataspace. + * + * @param space_id + * Dataspace identifier. + * @param rank + * Rank, or dimensionality, of the dataspace. + * @param current_size + * Array containing current size of dataspace. + * @param maximum_size + * Array containing maximum size of dataspace. + * + * @return a dataspace identifier if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static long H5Sset_extent_simple(long space_id, int rank, byte[] current_size, + byte[] maximum_size) throws HDF5LibraryException, NullPointerException { + ByteBuffer csbb = ByteBuffer.wrap(current_size); + long[] lacs = (csbb.asLongBuffer()).array(); + ByteBuffer maxsbb = ByteBuffer.wrap(maximum_size); + long[] lamaxs = (maxsbb.asLongBuffer()).array(); + + return H5Sset_extent_simple(space_id, rank, lacs, lamaxs); + } + + /** + * H5Scopy creates a new dataspace which is an exact copy of the dataspace identified by space_id. + * + * @param space_id + * Identifier of dataspace to copy. + * @return a dataspace identifier if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public static long H5Scopy(long space_id) throws HDF5LibraryException { + long id = _H5Scopy(space_id); + if (id > 0) { + log.trace("OPEN_IDS: H5Scopy add {}", id); + OPEN_IDS.add(id); + log.trace("OPEN_IDS: {}", OPEN_IDS.size()); + } + return id; + } + + private synchronized static native long _H5Scopy(long space_id) throws HDF5LibraryException; + + /** + * H5Sclose releases a dataspace. + * + * @param space_id + * Identifier of dataspace to release. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public static int H5Sclose(long space_id) throws HDF5LibraryException { + if (space_id < 0) + return 0; // throw new HDF5LibraryException("Negative ID");; + + log.trace("OPEN_IDS: H5Sclose remove {}", space_id); + OPEN_IDS.remove(space_id); + log.trace("OPEN_IDS: {}", OPEN_IDS.size()); + return _H5Sclose(space_id); + } + + private synchronized static native int _H5Sclose(long space_id) throws HDF5LibraryException; /** * H5Sencode converts a data space description into binary form in a buffer. @@ -8397,154 +11244,139 @@ public class H5 implements java.io.Serializable { public synchronized static native byte[] H5Sencode(long obj_id) throws HDF5LibraryException, NullPointerException; /** - * H5Sextent_copy copies the extent from source_space_id to dest_space_id. This action may change the type of the - * dataspace. + * H5Sdecode reconstructs the HDF5 data space object and returns a new object handle for it. * - * @param dest_space_id - * IN: The identifier for the dataspace from which the extent is copied. - * @param source_space_id - * IN: The identifier for the dataspace to which the extent is copied. + * @param buf + * IN: Buffer for the data space object to be decoded. * - * @return a non-negative value if successful + * @return a new object handle * * @exception HDF5LibraryException * - Error from the HDF-5 Library. + * @exception NullPointerException + * - buf is null. **/ - public synchronized static native int H5Sextent_copy(long dest_space_id, long source_space_id) - throws HDF5LibraryException; + public synchronized static native long H5Sdecode(byte[] buf) throws HDF5LibraryException, NullPointerException; /** - * H5Sextent_equal determines whether the dataspace extents of two dataspaces, space1_id and space2_id, are equal. + * H5Sget_simple_extent_npoints determines the number of elements in a dataspace. * - * @param first_space_id - * IN: The identifier for the first dataspace. - * @param second_space_id - * IN: The identifier for the seconddataspace. + * @param space_id + * ID of the dataspace object to query + * @return the number of elements in the dataspace if successful * - * @return true if successful, else false + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native long H5Sget_simple_extent_npoints(long space_id) throws HDF5LibraryException; + + /** + * H5Sget_simple_extent_ndims determines the dimensionality (or rank) of a dataspace. + * + * @param space_id + * IN: Identifier of the dataspace + * + * @return the number of dimensions in the dataspace if successful * * @exception HDF5LibraryException * - Error from the HDF-5 Library. **/ - public synchronized static native boolean H5Sextent_equal(long first_space_id, long second_space_id) - throws HDF5LibraryException; + public synchronized static native int H5Sget_simple_extent_ndims(long space_id) throws HDF5LibraryException; /** - * H5Sget_select_bounds retrieves the coordinates of the bounding box containing the current selection and places - * them into user-supplied buffers. - * <P> - * The start and end buffers must be large enough to hold the dataspace rank number of coordinates. + * H5Sget_simple_extent_dims returns the size and maximum sizes of each dimension of a dataspace through the dims + * and maxdims parameters. * - * @param spaceid - * Identifier of dataspace to release. - * @param start - * coordinates of lowest corner of bounding box. - * @param end - * coordinates of highest corner of bounding box. + * @param space_id + * IN: Identifier of the dataspace object to query + * @param dims + * OUT: Pointer to array to store the size of each dimension. + * @param maxdims + * OUT: Pointer to array to store the maximum size of each dimension. * - * @return a non-negative value if successful,with start and end initialized. + * @return the number of dimensions in the dataspace if successful * * @exception HDF5LibraryException * - Error from the HDF-5 Library. * @exception NullPointerException - * - start or end is null. + * - dims or maxdims is null. **/ - public synchronized static native int H5Sget_select_bounds(long spaceid, long[] start, long[] end) + public synchronized static native int H5Sget_simple_extent_dims(long space_id, long[] dims, long[] maxdims) throws HDF5LibraryException, NullPointerException; /** - * H5Sget_select_elem_npoints returns the number of element points in the current dataspace selection. + * H5Sis_simple determines whether a dataspace is a simple dataspace. * - * @param spaceid - * Identifier of dataspace to release. + * @param space_id + * Identifier of the dataspace to query * - * @return a non-negative value if successful + * @return true if is a simple dataspace * * @exception HDF5LibraryException * - Error from the HDF-5 Library. **/ - public synchronized static native long H5Sget_select_elem_npoints(long spaceid) throws HDF5LibraryException; + public synchronized static native boolean H5Sis_simple(long space_id) throws HDF5LibraryException; /** - * H5Sget_select_elem_pointlist returns an array of of element points in the current dataspace selection. The point - * coordinates have the same dimensionality (rank) as the dataspace they are located within, one coordinate per - * point. + * H5Sget_simple_extent_type queries a dataspace to determine the current class of a dataspace. * - * @param spaceid - * Identifier of dataspace to release. - * @param startpoint - * first point to retrieve - * @param numpoints - * number of points to retrieve - * @param buf - * returns points startblock to startblock+num-1, each points is <i>rank</i> longs. + * @param space_id + * Dataspace identifier. * - * @return a non-negative value if successful + * @return a dataspace class name if successful * * @exception HDF5LibraryException * - Error from the HDF-5 Library. - * @exception NullPointerException - * - buf is null. **/ - public synchronized static native int H5Sget_select_elem_pointlist(long spaceid, long startpoint, long numpoints, - long[] buf) throws HDF5LibraryException, NullPointerException; + public synchronized static native int H5Sget_simple_extent_type(long space_id) throws HDF5LibraryException; /** - * H5Sget_select_hyper_blocklist returns an array of hyperslab blocks. The block coordinates have the same - * dimensionality (rank) as the dataspace they are located within. The list of blocks is formatted as follows: - * - * <pre> - * <"start" coordinate>, immediately followed by - * <"opposite" corner coordinate>, followed by - * the next "start" and "opposite" coordinates, - * etc. - * until all of the selected blocks have been listed. - * </pre> + * H5Sset_extent_none removes the extent from a dataspace and sets the type to H5S_NONE. * - * @param spaceid - * Identifier of dataspace to release. - * @param startblock - * first block to retrieve - * @param numblocks - * number of blocks to retrieve - * @param buf - * returns blocks startblock to startblock+num-1, each block is <i>rank</i> * 2 (corners) longs. + * @param space_id + * The identifier for the dataspace from which the extent is to be removed. * * @return a non-negative value if successful * * @exception HDF5LibraryException * - Error from the HDF-5 Library. - * @exception NullPointerException - * - buf is null. **/ - public synchronized static native int H5Sget_select_hyper_blocklist(long spaceid, long startblock, long numblocks, - long[] buf) throws HDF5LibraryException, NullPointerException; + public synchronized static native int H5Sset_extent_none(long space_id) throws HDF5LibraryException; /** - * H5Sget_select_hyper_nblocks returns the number of hyperslab blocks in the current dataspace selection. + * H5Sextent_copy copies the extent from source_space_id to dest_space_id. This action may change the type of the + * dataspace. * - * @param spaceid - * Identifier of dataspace to release. + * @param dest_space_id + * IN: The identifier for the dataspace from which the extent is copied. + * @param source_space_id + * IN: The identifier for the dataspace to which the extent is copied. * * @return a non-negative value if successful * * @exception HDF5LibraryException * - Error from the HDF-5 Library. **/ - public synchronized static native long H5Sget_select_hyper_nblocks(long spaceid) throws HDF5LibraryException; + public synchronized static native int H5Sextent_copy(long dest_space_id, long source_space_id) + throws HDF5LibraryException; /** - * H5Sget_select_npoints determines the number of elements in the current selection of a dataspace. + * H5Sextent_equal determines whether the dataspace extents of two dataspaces, space1_id and space2_id, are equal. * - * @param space_id - * IN: Identifier of the dataspace object to query + * @param first_space_id + * IN: The identifier for the first dataspace. + * @param second_space_id + * IN: The identifier for the seconddataspace. * - * @return the number of elements in the selection if successful + * @return true if successful, else false * * @exception HDF5LibraryException * - Error from the HDF-5 Library. **/ - public synchronized static native long H5Sget_select_npoints(long space_id) throws HDF5LibraryException; + public synchronized static native boolean H5Sextent_equal(long first_space_id, long second_space_id) + throws HDF5LibraryException; + + /***************** Operations on dataspace selections *****************/ /** * H5Sget_select_type retrieves the type of selection currently defined for the dataspace space_id. @@ -8560,76 +11392,118 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Sget_select_type(long space_id) throws HDF5LibraryException; /** - * H5Sget_simple_extent_dims returns the size and maximum sizes of each dimension of a dataspace through the dims - * and maxdims parameters. + * H5Sget_select_npoints determines the number of elements in the current selection of a dataspace. * * @param space_id * IN: Identifier of the dataspace object to query - * @param dims - * OUT: Pointer to array to store the size of each dimension. - * @param maxdims - * OUT: Pointer to array to store the maximum size of each dimension. * - * @return the number of dimensions in the dataspace if successful + * @return the number of elements in the selection if successful * * @exception HDF5LibraryException * - Error from the HDF-5 Library. - * @exception NullPointerException - * - dims or maxdims is null. **/ - public synchronized static native int H5Sget_simple_extent_dims(long space_id, long[] dims, long[] maxdims) - throws HDF5LibraryException, NullPointerException; + public synchronized static native long H5Sget_select_npoints(long space_id) throws HDF5LibraryException; /** - * H5Sget_simple_extent_ndims determines the dimensionality (or rank) of a dataspace. + * H5Sselect_copy copies all the selection information (including offset) from the source + * dataspace to the destination dataspace. + * @param dst_id ID of the destination dataspace + * @param src_id ID of the source dataspace + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native void H5Sselect_copy(long dst_id, long src_id) throws HDF5LibraryException; + + /** + * H5Sselect_valid verifies that the selection for the dataspace. * * @param space_id - * IN: Identifier of the dataspace + * The identifier for the dataspace in which the selection is being reset. * - * @return the number of dimensions in the dataspace if successful + * @return true if the selection is contained within the extent and FALSE if it is not or is an error. * * @exception HDF5LibraryException * - Error from the HDF-5 Library. **/ - public synchronized static native int H5Sget_simple_extent_ndims(long space_id) throws HDF5LibraryException; + public synchronized static native boolean H5Sselect_valid(long space_id) throws HDF5LibraryException; /** - * H5Sget_simple_extent_npoints determines the number of elements in a dataspace. + * H5Sselect_adjust moves a selection by subtracting an offset from it. * * @param space_id - * ID of the dataspace object to query - * @return the number of elements in the dataspace if successful + * ID of dataspace to adjust + * @param offset + * Offset to subtract * * @exception HDF5LibraryException * - Error from the HDF-5 Library. + * @exception NullPointerException + * - offset is null. **/ - public synchronized static native long H5Sget_simple_extent_npoints(long space_id) throws HDF5LibraryException; + public synchronized static native void H5Sselect_adjust(long space_id, long[][] offset) + throws HDF5LibraryException, NullPointerException; /** - * H5Sget_simple_extent_type queries a dataspace to determine the current class of a dataspace. + * H5Sget_select_bounds retrieves the coordinates of the bounding box containing the current selection and places + * them into user-supplied buffers. + * <P> + * The start and end buffers must be large enough to hold the dataspace rank number of coordinates. * * @param space_id - * Dataspace identifier. + * Identifier of dataspace to release. + * @param start + * coordinates of lowest corner of bounding box. + * @param end + * coordinates of highest corner of bounding box. * - * @return a dataspace class name if successful + * @return a non-negative value if successful,with start and end initialized. * * @exception HDF5LibraryException * - Error from the HDF-5 Library. + * @exception NullPointerException + * - start or end is null. **/ - public synchronized static native int H5Sget_simple_extent_type(long space_id) throws HDF5LibraryException; + public synchronized static native int H5Sget_select_bounds(long space_id, long[] start, long[] end) + throws HDF5LibraryException, NullPointerException; /** - * H5Sis_simple determines whether a dataspace is a simple dataspace. + * H5Sselect_shape_same checks to see if the current selection in the dataspaces are the same + * dimensionality and shape. + * This is primarily used for reading the entire selection in one swoop. + * + * @param space1_id ID of 1st Dataspace pointer to compare + * @param space2_id ID of 2nd Dataspace pointer to compare + * + * @return true if the selection is the same dimensionality and shape; + * false otherwise + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native boolean H5Sselect_shape_same(long space1_id, long space2_id) throws HDF5LibraryException; + + /** + * H5Sselect_intersect_block checks to see if the current selection in the + * dataspace intersects with the block given. * * @param space_id - * Identifier of the dataspace to query + * ID of dataspace pointer to compare + * @param start + * Starting coordinate of block + * @param end + * Opposite ("ending") coordinate of block * - * @return true if is a simple dataspace + * @return a TRUE if the current selection in the dataspace intersects with the block given + * FALSE otherwise * * @exception HDF5LibraryException * - Error from the HDF-5 Library. + * @exception NullPointerException + * - offset is null. **/ - public synchronized static native boolean H5Sis_simple(long space_id) throws HDF5LibraryException; + public synchronized static native boolean H5Sselect_intersect_block(long space_id, long[] start, long[] end) + throws HDF5LibraryException, NullPointerException; /** * H5Soffset_simple sets the offset of a simple dataspace space_id. @@ -8649,6 +11523,21 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Soffset_simple(long space_id, byte[] offset) throws HDF5LibraryException, NullPointerException; + /** + * H5Soffset_simple sets the offset of a simple dataspace space_id. + * + * @param space_id + * IN: The identifier for the dataspace object to reset. + * @param offset + * IN: The offset at which to position the selection. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - offset array is null. + **/ public synchronized static int H5Soffset_simple(long space_id, long[] offset) throws HDF5Exception, NullPointerException { if (offset == null) { @@ -8679,6 +11568,18 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Sselect_all(long space_id) throws HDF5LibraryException; /** + * H5Sselect_none resets the selection region for the dataspace space_id to include no elements. + * + * @param space_id + * IN: The identifier of the dataspace to be reset. + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native int H5Sselect_none(long space_id) throws HDF5LibraryException; + + /** * H5Sselect_elements selects array elements to be included in the selection for the space_id dataspace. * * @param space_id @@ -8736,6 +11637,43 @@ public class H5 implements java.io.Serializable { } /** + * H5Sget_select_elem_npoints returns the number of element points in the current dataspace selection. + * + * @param spaceid + * Identifier of dataspace to release. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native long H5Sget_select_elem_npoints(long spaceid) throws HDF5LibraryException; + + /** + * H5Sget_select_elem_pointlist returns an array of of element points in the current dataspace selection. The point + * coordinates have the same dimensionality (rank) as the dataspace they are located within, one coordinate per + * point. + * + * @param spaceid + * Identifier of dataspace to release. + * @param startpoint + * first point to retrieve + * @param numpoints + * number of points to retrieve + * @param buf + * returns points startblock to startblock+num-1, each points is <i>rank</i> longs. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - buf is null. + **/ + public synchronized static native int H5Sget_select_elem_pointlist(long spaceid, long startpoint, long numpoints, + long[] buf) throws HDF5LibraryException, NullPointerException; + + /** * H5Sselect_hyperslab selects a hyperslab region to add to the current selected region for the dataspace specified * by space_id. The start, stride, count, and block arrays must be the same size as the rank of the dataspace. * @@ -8775,76 +11713,118 @@ public class H5 implements java.io.Serializable { return H5Sselect_hyperslab(space_id, op, lastart, lastride, lacount, lablock); } - public synchronized static native int H5Sselect_hyperslab(long space_id, int op, long[] start, long[] stride, - long[] count, long[] block) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; - /** - * H5Sselect_none resets the selection region for the dataspace space_id to include no elements. + * H5Sselect_hyperslab selects a hyperslab region to add to the current selected region for the dataspace specified + * by space_id. The start, stride, count, and block arrays must be the same size as the rank of the dataspace. * * @param space_id - * IN: The identifier of the dataspace to be reset. + * IN: Identifier of dataspace selection to modify + * @param op + * IN: Operation to perform on current selection. + * @param start + * IN: Offset of start of hyperslab + * @param stride + * IN: Hyperslab stride. + * @param count + * IN: Number of blocks included in hyperslab. + * @param block + * IN: Size of block in hyperslab. + * * @return a non-negative value if successful * * @exception HDF5LibraryException * - Error from the HDF-5 Library. + * @exception NullPointerException + * - an input array is null. + * @exception IllegalArgumentException + * - an input array is invalid. **/ - public synchronized static native int H5Sselect_none(long space_id) throws HDF5LibraryException; + public synchronized static native int H5Sselect_hyperslab(long space_id, int op, long[] start, long[] stride, + long[] count, long[] block) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; + /** - * H5Sselect_valid verifies that the selection for the dataspace. + * H5Scombine_hyperslab combines a hyperslab selection with the current selection for a dataspace, + * creating a new dataspace to return the generated selection. + * If the current selection is not a hyperslab, it is freed and the hyperslab + * parameters passed in are combined with the H5S_SEL_ALL hyperslab (ie. a + * selection composing the entire current extent). If STRIDE or BLOCK is + * NULL, they are assumed to be set to all '1'. * * @param space_id - * The identifier for the dataspace in which the selection is being reset. + * IN: Dataspace ID of selection to use + * @param op + * IN: Operation to perform on current selection. + * @param start + * IN: Offset of start of hyperslab + * @param stride + * IN: Hyperslab stride. + * @param count + * IN: Number of blocks included in hyperslab. + * @param block + * IN: Size of block in hyperslab. * - * @return true if the selection is contained within the extent and FALSE if it is not or is an error. + * @return a dataspace ID on success / H5I_INVALID_HID on failure * * @exception HDF5LibraryException * - Error from the HDF-5 Library. + * @exception NullPointerException + * - an input array is null. + * @exception IllegalArgumentException + * - an input array is invalid. **/ - public synchronized static native boolean H5Sselect_valid(long space_id) throws HDF5LibraryException; + public synchronized static native long H5Scombine_hyperslab(long space_id, int op, long[] start, long[] stride, + long[] count, long[] block) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; /** - * H5Sset_extent_none removes the extent from a dataspace and sets the type to H5S_NONE. + * H5Smodify_select refine an existing hyperslab selection with an operation, using a second + * hyperslab. The first selection is modified to contain the result of + * space1 operated on by space2. * - * @param space_id - * The identifier for the dataspace from which the extent is to be removed. + * @param space1_id + * ID of the destination dataspace + * @param op + * Operation to perform on current selection. + * @param space2_id + * ID of the source dataspace * - * @return a non-negative value if successful + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native void H5Smodify_select(long space1_id, int op, long space2_id) throws HDF5LibraryException; + + /** + * H5Scombine_select combines two existing hyperslab selections with an operation, returning + * a new dataspace with the resulting selection. The dataspace extent from + * space1 is copied for the dataspace extent of the newly created dataspace. + * + * @param space1_id + * ID of the first dataspace + * @param op + * Operation to perform on current selection. + * @param space2_id + * ID of the second dataspace + * + * @return a dataspace ID on success / H5I_INVALID_HID on failure * * @exception HDF5LibraryException * - Error from the HDF-5 Library. **/ - public synchronized static native int H5Sset_extent_none(long space_id) throws HDF5LibraryException; + public synchronized static native long H5Scombine_select(long space1_id, int op, long space2_id) throws HDF5LibraryException; /** - * H5Sset_extent_simple sets or resets the size of an existing dataspace. + * H5Sis_regular_hyperslab retrieves a regular hyperslab selection for the dataspace specified + * by space_id. * * @param space_id - * Dataspace identifier. - * @param rank - * Rank, or dimensionality, of the dataspace. - * @param current_size - * Array containing current size of dataspace. - * @param maximum_size - * Array containing maximum size of dataspace. + * IN: Identifier of dataspace selection to query * - * @return a dataspace identifier if successful + * @return a TRUE/FALSE for hyperslab selection if successful * * @exception HDF5LibraryException * - Error from the HDF-5 Library. **/ - public synchronized static native long H5Sset_extent_simple(long space_id, int rank, long[] current_size, - long[] maximum_size) throws HDF5LibraryException, NullPointerException; - - public synchronized static long H5Sset_extent_simple(long space_id, int rank, byte[] current_size, - byte[] maximum_size) throws HDF5LibraryException, NullPointerException { - ByteBuffer csbb = ByteBuffer.wrap(current_size); - long[] lacs = (csbb.asLongBuffer()).array(); - ByteBuffer maxsbb = ByteBuffer.wrap(maximum_size); - long[] lamaxs = (maxsbb.asLongBuffer()).array(); - - return H5Sset_extent_simple(space_id, rank, lacs, lamaxs); - } + public synchronized static native boolean H5Sis_regular_hyperslab(long space_id) throws HDF5LibraryException; /** * H5Sget_regular_hyperslab determines if a hyperslab selection is regular for the dataspace specified @@ -8870,33 +11850,82 @@ public class H5 implements java.io.Serializable { **/ public synchronized static native void H5Sget_regular_hyperslab(long space_id, long[] start, long[] stride, long[] count, long[] block) throws HDF5LibraryException, NullPointerException, IllegalArgumentException; + /** + * H5Sget_select_hyper_nblocks returns the number of hyperslab blocks in the current dataspace selection. + * + * @param spaceid + * Identifier of dataspace to release. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native long H5Sget_select_hyper_nblocks(long spaceid) throws HDF5LibraryException; + /** - * H5Sis_regular_hyperslab retrieves a regular hyperslab selection for the dataspace specified - * by space_id. + * H5Sget_select_hyper_blocklist returns an array of hyperslab blocks. The block coordinates have the same + * dimensionality (rank) as the dataspace they are located within. The list of blocks is formatted as follows: * - * @param space_id - * IN: Identifier of dataspace selection to query + * <pre> + * <"start" coordinate>, immediately followed by + * <"opposite" corner coordinate>, followed by + * the next "start" and "opposite" coordinates, + * etc. + * until all of the selected blocks have been listed. + * </pre> * - * @return a TRUE/FALSE for hyperslab selection if successful + * @param spaceid + * Identifier of dataspace to release. + * @param startblock + * first block to retrieve + * @param numblocks + * number of blocks to retrieve + * @param buf + * returns blocks startblock to startblock+num-1, each block is <i>rank</i> * 2 (corners) longs. + * + * @return a non-negative value if successful * * @exception HDF5LibraryException * - Error from the HDF-5 Library. + * @exception NullPointerException + * - buf is null. **/ - public synchronized static native boolean H5Sis_regular_hyperslab(long space_id) throws HDF5LibraryException; + public synchronized static native int H5Sget_select_hyper_blocklist(long spaceid, long startblock, long numblocks, + long[] buf) throws HDF5LibraryException, NullPointerException; - // /////// unimplemented //////// - // #ifdef NEW_HYPERSLAB_API - // hid_t H5Scombine_hyperslab(hid_t space_id, H5S_seloper_t op, - // const hsize_t start[], - // const hsize_t _stride[], - // const hsize_t count[], - // const hsize_t _block[]); - // herr_t H5Sselect_select(hid_t space1_id, H5S_seloper_t op, - // hid_t space2_id); - // hid_t H5Scombine_select(hid_t space1_id, H5S_seloper_t op, - // hid_t space2_id); - // #endif /* NEW_HYPERSLAB_API */ - // herr_t H5Sselect_copy(hid_t dst_id, hid_t src_id); + /** + * H5Sselect_project_intersection projects the intersection of the selections of src_space_id and + * src_intersect_space_id within the selection of src_space_id as a + * selection within the selection of dst_space_id. + * + * @param src_space_id + * Selection that is mapped to dst_space_id, and intersected with src_intersect_space_id + * @param dst_space_id + * Selection that is mapped to src_space_id + * @param src_intersect_space_id + * Selection whose intersection with src_space_id is projected to dst_space_id to obtain the result + * + * @return a dataspace with a selection equal to the intersection of + * src_intersect_space_id and src_space_id projected from src_space to dst_space on success + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native long H5Sselect_project_intersection(long src_space_id, long dst_space_id, + long src_intersect_space_id) throws HDF5LibraryException; + + + // /////// unimplemented //////// + ///// Operations on dataspace selections ///// + + // + ///// Operations on dataspace selection iterators ///// + //public synchronized static native H5Ssel_iter_create(hid_t spaceid, size_t elmt_size, unsigned flags); + //public synchronized static native H5Ssel_iter_get_seq_list(hid_t sel_iter_id, size_t maxseq, size_t maxbytes, size_t *nseq, + // size_t *nbytes, hsize_t *off, size_t *len); + //public synchronized static native H5Ssel_iter_reset(hid_t sel_iter_id, hid_t space_id); + //public synchronized static native H5Ssel_iter_close(hid_t sel_iter_id); @@ -9244,6 +12273,23 @@ public class H5 implements java.io.Serializable { return H5Tenum_insert_int(type, name, value); } + /** + * H5Tenum_insert inserts a new enumeration datatype member into an enumeration datatype. + * + * @param type + * IN: Identifier of datatype. + * @param name + * IN: The name of the member + * @param value + * IN: The value of the member, data of the correct type + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - name is null. + **/ public static int H5Tenum_insert(long type, String name, int value) throws HDF5LibraryException, NullPointerException { int[] val = { value }; @@ -9730,8 +12776,11 @@ public class H5 implements java.io.Serializable { * IN: Field name of the field index to retrieve. * * @return if field is defined, the index; else negative. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. **/ - public synchronized static native int H5Tget_member_index(long type_id, String field_name); + public synchronized static native int H5Tget_member_index(long type_id, String field_name) throws HDF5LibraryException; /** * H5Tget_member_name retrieves the name of a field of a compound datatype or an element of an enumeration datatype. @@ -9742,8 +12791,11 @@ public class H5 implements java.io.Serializable { * IN: Field index (0-based) of the field name to retrieve. * * @return a valid pointer to the name if successful; otherwise null. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. **/ - public synchronized static native String H5Tget_member_name(long type_id, int field_idx); + public synchronized static native String H5Tget_member_name(long type_id, int field_idx) throws HDF5LibraryException; /** * H5Tget_member_offset returns the byte offset of the specified member of the compound datatype. This is the byte @@ -9755,11 +12807,8 @@ public class H5 implements java.io.Serializable { * IN: Field index (0-based) of the field type to retrieve. * * @return the offset of the member. - * - * @exception HDF5LibraryException - * - Error from the HDF-5 Library. **/ - public synchronized static native long H5Tget_member_offset(long type_id, int membno) throws HDF5LibraryException; + public synchronized static native long H5Tget_member_offset(long type_id, int membno); /** * H5Tget_member_type returns the datatype of the specified member. @@ -10313,6 +13362,26 @@ public class H5 implements java.io.Serializable { public synchronized static native int H5Tpack(long type_id) throws HDF5LibraryException; /** + * H5Treclaim reclaims buffer used for VL data. + * + * @param type_id + * Identifier of the datatype. + * @param space_id + * Identifier of the dataspace. + * @param xfer_plist_id + * Identifier of a transfer property list for this I/O operation. + * @param buf + * Buffer with data to be reclaimed. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + * @exception NullPointerException + * - buf is null. + **/ + public synchronized static native void H5Treclaim(long type_id, long space_id, long xfer_plist_id, byte[] buf) + throws HDF5LibraryException, NullPointerException; + + /** * H5Tvlen_create creates a new variable-length (VL) dataype. * * @param base_id @@ -10380,13 +13449,129 @@ public class H5 implements java.io.Serializable { // //////////////////////////////////////////////////////////// /// VOL Connector Functionality - public synchronized static native long H5VLregister_connector_by_name(String connector_name, long vipl_id); - public synchronized static native long H5VLregister_connector_by_value(int connector_value, long vipl_id); - public synchronized static native boolean H5VLis_connector_registered(String name); - public synchronized static native long H5VLget_connector_id(String name); - public synchronized static native String H5VLget_connector_name(long object_id); - public synchronized static native void H5VLclose(long connector_id); - public synchronized static native void H5VLunregister_connector(long connector_id); + /** + * H5VLregister_connector_by_name registers a new VOL connector as a member of the virtual object layer class. + * + * @param connector_name + * IN: name of the connector. + * @param vipl_id + * IN: VOL initialization property list which must be + * created with H5Pcreate(H5P_VOL_INITIALIZE) (or H5P_DEFAULT). + * + * @return a VOL connector ID + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native long H5VLregister_connector_by_name(String connector_name, long vipl_id) throws HDF5LibraryException; + /** + * H5VLregister_connector_by_value registers a new VOL connector as a member of the virtual object layer class. + * + * @param connector_value + * IN: value of the connector. + * @param vipl_id + * IN: VOL initialization property list which must be + * created with H5Pcreate(H5P_VOL_INITIALIZE) (or H5P_DEFAULT). + * + * @return a VOL connector ID + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native long H5VLregister_connector_by_value(int connector_value, long vipl_id) throws HDF5LibraryException; + /** + * H5VLis_connector_registered_by_name tests whether a VOL class has been registered. + * + * @param name + * IN: name of the connector. + * + * @return true if a VOL connector with that name has been registered + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native boolean H5VLis_connector_registered_by_name(String name) throws HDF5LibraryException; + /** + * H5VLis_connector_registered_by_value tests whether a VOL class has been registered. + * + * @param connector_value + * IN: value of the connector. + * + * @return true if a VOL connector with that value has been registered + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native boolean H5VLis_connector_registered_by_value(int connector_value) throws HDF5LibraryException; + /** + * H5VLget_connector_id retrieves the ID for a registered VOL connector for a given object. + * + * @param object_id + * IN: Identifier of the object. + * + * @return a VOL connector ID + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native long H5VLget_connector_id(long object_id) throws HDF5LibraryException; + /** + * H5VLget_connector_id_by_name retrieves the ID for a registered VOL connector. + * + * @param name + * IN: name of the connector. + * + * @return a VOL connector ID + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native long H5VLget_connector_id_by_name(String name) throws HDF5LibraryException; + /** + * H5VLget_connector_id_by_value retrieves the ID for a registered VOL connector. + * + * @param connector_value + * IN: value of the connector. + * + * @return a VOL connector ID + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native long H5VLget_connector_id_by_value(int connector_value) throws HDF5LibraryException; + /** + * H5VLget_connector_name returns the connector name for the VOL associated with the + * object or file ID. + * + * @param object_id + * IN: Identifier of the object. + * + * @return the connector name + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native String H5VLget_connector_name(long object_id) throws HDF5LibraryException; + /** + * H5VLclose closes a VOL connector ID. + * + * @param connector_id + * IN: Identifier of the connector. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native void H5VLclose(long connector_id) throws HDF5LibraryException; + /** + * H5VLunregister_connector removes a VOL connector ID from the library. + * + * @param connector_id + * IN: Identifier of the connector. + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native void H5VLunregister_connector(long connector_id) throws HDF5LibraryException; // /////// unimplemented //////// // hid_t H5VLregister_connector(const H5VL_class_t *cls, hid_t vipl_id); @@ -10398,11 +13583,44 @@ public class H5 implements java.io.Serializable { // // // //////////////////////////////////////////////////////////// - public synchronized static native int H5Zfilter_avail(int filter) throws HDF5LibraryException, NullPointerException; + /** + * H5Zfilter_avail checks if a filter is available. + * + * @param filter + * IN: filter number. + * + * @return a non-negative(TRUE/FALSE) value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native int H5Zfilter_avail(int filter) throws HDF5LibraryException; + /** + * H5Zget_filter_info gets information about a pipeline data filter. + * + * @param filter + * IN: filter number. + * + * @return the filter information flags + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ public synchronized static native int H5Zget_filter_info(int filter) throws HDF5LibraryException; - public synchronized static native int H5Zunregister(int filter) throws HDF5LibraryException, NullPointerException; + /** + * H5Zunregister unregisters a filter. + * + * @param filter + * IN: filter number. + * + * @return a non-negative value if successful + * + * @exception HDF5LibraryException + * - Error from the HDF-5 Library. + **/ + public synchronized static native int H5Zunregister(int filter) throws HDF5LibraryException; // /////// unimplemented //////// diff --git a/java/src/hdf/hdf5lib/HDF5Constants.java b/java/src/hdf/hdf5lib/HDF5Constants.java index 2e80f2e..4125907 100644 --- a/java/src/hdf/hdf5lib/HDF5Constants.java +++ b/java/src/hdf/hdf5lib/HDF5Constants.java @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -14,6 +14,8 @@ package hdf.hdf5lib; +import hdf.hdf5lib.structs.H5O_token_t; + /** * /** This class contains C constants and enumerated types of HDF5 library. The * values of these constants are obtained from the library by calling J2C(int @@ -33,259 +35,650 @@ public class HDF5Constants { // Get the HDF5 constants from the library // // ///////////////////////////////////////////////////////////////////////// - public static final long H5_QUARTER_HADDR_MAX = H5_QUARTER_HADDR_MAX(); + //public static final long H5_QUARTER_HADDR_MAX = H5_QUARTER_HADDR_MAX(); + /** Special parameters for szip compression */ public static final int H5_SZIP_MAX_PIXELS_PER_BLOCK = H5_SZIP_MAX_PIXELS_PER_BLOCK(); + /** Special parameters for szip compression */ public static final int H5_SZIP_NN_OPTION_MASK = H5_SZIP_NN_OPTION_MASK(); + /** Special parameters for szip compression */ public static final int H5_SZIP_EC_OPTION_MASK = H5_SZIP_EC_OPTION_MASK(); + /** Special parameters for szip compression */ public static final int H5_SZIP_ALLOW_K13_OPTION_MASK = H5_SZIP_ALLOW_K13_OPTION_MASK(); + /** Special parameters for szip compression */ public static final int H5_SZIP_CHIP_OPTION_MASK = H5_SZIP_CHIP_OPTION_MASK(); + /** indices on links, unknown index type */ public static final int H5_INDEX_UNKNOWN = H5_INDEX_UNKNOWN(); + /** indices on links, index on names */ public static final int H5_INDEX_NAME = H5_INDEX_NAME(); + /** indices on links, index on creation order */ public static final int H5_INDEX_CRT_ORDER = H5_INDEX_CRT_ORDER(); + /** indices on links, number of indices defined */ public static final int H5_INDEX_N = H5_INDEX_N(); + /** Common iteration orders, Unknown order */ public static final int H5_ITER_UNKNOWN = H5_ITER_UNKNOWN(); + /** Common iteration orders, Increasing order */ public static final int H5_ITER_INC = H5_ITER_INC(); + /** Common iteration orders, Decreasing order */ public static final int H5_ITER_DEC = H5_ITER_DEC(); + /** Common iteration orders, No particular order, whatever is fastest */ public static final int H5_ITER_NATIVE = H5_ITER_NATIVE(); + /** Common iteration orders, Number of iteration orders */ public static final int H5_ITER_N = H5_ITER_N(); + /** */ public static final int H5AC_CURR_CACHE_CONFIG_VERSION = H5AC_CURR_CACHE_CONFIG_VERSION(); + /** */ public static final int H5AC_MAX_TRACE_FILE_NAME_LEN = H5AC_MAX_TRACE_FILE_NAME_LEN(); + /** */ public static final int H5AC_METADATA_WRITE_STRATEGY_PROCESS_ZERO_ONLY = H5AC_METADATA_WRITE_STRATEGY_PROCESS_ZERO_ONLY(); + /** */ public static final int H5AC_METADATA_WRITE_STRATEGY_DISTRIBUTED = H5AC_METADATA_WRITE_STRATEGY_DISTRIBUTED(); + /** */ public static final int H5C_incr_off = H5C_incr_off(); + /** */ public static final int H5C_incr_threshold = H5C_incr_threshold(); + /** */ public static final int H5C_flash_incr_off = H5C_flash_incr_off(); + /** */ public static final int H5C_flash_incr_add_space = H5C_flash_incr_add_space(); + /** */ public static final int H5C_decr_off = H5C_decr_off(); + /** */ public static final int H5C_decr_threshold = H5C_decr_threshold(); + /** */ public static final int H5C_decr_age_out = H5C_decr_age_out(); + /** */ public static final int H5C_decr_age_out_with_threshold = H5C_decr_age_out_with_threshold(); + /** */ public static final int H5D_CHUNK_IDX_BTREE = H5D_CHUNK_IDX_BTREE(); + /** */ public static final int H5D_ALLOC_TIME_DEFAULT = H5D_ALLOC_TIME_DEFAULT(); + /** */ public static final int H5D_ALLOC_TIME_EARLY = H5D_ALLOC_TIME_EARLY(); + /** */ public static final int H5D_ALLOC_TIME_ERROR = H5D_ALLOC_TIME_ERROR(); + /** */ public static final int H5D_ALLOC_TIME_INCR = H5D_ALLOC_TIME_INCR(); + /** */ public static final int H5D_ALLOC_TIME_LATE = H5D_ALLOC_TIME_LATE(); + /** */ public static final int H5D_FILL_TIME_ERROR = H5D_FILL_TIME_ERROR(); + /** */ public static final int H5D_FILL_TIME_ALLOC = H5D_FILL_TIME_ALLOC(); + /** */ public static final int H5D_FILL_TIME_NEVER = H5D_FILL_TIME_NEVER(); + /** */ public static final int H5D_FILL_TIME_IFSET = H5D_FILL_TIME_IFSET(); + /** */ public static final int H5D_FILL_VALUE_DEFAULT = H5D_FILL_VALUE_DEFAULT(); + /** */ public static final int H5D_FILL_VALUE_ERROR = H5D_FILL_VALUE_ERROR(); + /** */ public static final int H5D_FILL_VALUE_UNDEFINED = H5D_FILL_VALUE_UNDEFINED(); + /** */ public static final int H5D_FILL_VALUE_USER_DEFINED = H5D_FILL_VALUE_USER_DEFINED(); + /** */ public static final int H5D_LAYOUT_ERROR = H5D_LAYOUT_ERROR(); + /** */ public static final int H5D_CHUNKED = H5D_CHUNKED(); + /** */ public static final int H5D_COMPACT = H5D_COMPACT(); + /** */ public static final int H5D_CONTIGUOUS = H5D_CONTIGUOUS(); + /** */ public static final int H5D_VIRTUAL = H5D_VIRTUAL(); + /** */ public static final int H5D_NLAYOUTS = H5D_NLAYOUTS(); + /** */ public static final int H5D_SPACE_STATUS_ALLOCATED = H5D_SPACE_STATUS_ALLOCATED(); + /** */ public static final int H5D_SPACE_STATUS_ERROR = H5D_SPACE_STATUS_ERROR(); + /** */ public static final int H5D_SPACE_STATUS_NOT_ALLOCATED = H5D_SPACE_STATUS_NOT_ALLOCATED(); + /** */ public static final int H5D_SPACE_STATUS_PART_ALLOCATED = H5D_SPACE_STATUS_PART_ALLOCATED(); + /** */ public static final int H5D_VDS_ERROR = H5D_VDS_ERROR(); + /** */ public static final int H5D_VDS_FIRST_MISSING = H5D_VDS_FIRST_MISSING(); + /** */ public static final int H5D_VDS_LAST_AVAILABLE = H5D_VDS_LAST_AVAILABLE(); + /** */ public static final int H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS = H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS(); + /** Different kinds of error information - H5E_type_t */ public static final int H5E_MAJOR = H5E_MAJOR(); + /** Different kinds of error information - H5E_type_t */ public static final int H5E_MINOR = H5E_MINOR(); + /** Minor error codes - Object header related errors - Alignment error */ public static final long H5E_ALIGNMENT = H5E_ALIGNMENT(); + /** Minor error codes - Resource errors - Object already exists */ public static final long H5E_ALREADYEXISTS = H5E_ALREADYEXISTS(); + /** Minor error codes - Function entry/exit interface - Object already initialized */ public static final long H5E_ALREADYINIT = H5E_ALREADYINIT(); + /** Major error codes - Invalid arguments to routine */ public static final long H5E_ARGS = H5E_ARGS(); - public static final long H5E_ATOM = H5E_ATOM(); + /** Major error codes - Object ID */ + public static final long H5E_ID = H5E_ID(); + /** Major error codes - Attribute */ public static final long H5E_ATTR = H5E_ATTR(); - public static final long H5E_BADATOM = H5E_BADATOM(); + /** Minor error codes - Object ID related errors - Unable to find ID information (already closed?) */ + public static final long H5E_BADID = H5E_BADID(); + /** Minor error codes - File accessibility errors - Bad file ID accessed */ public static final long H5E_BADFILE = H5E_BADFILE(); + /** Minor error codes - Object ID related errors - Unable to find ID group information */ public static final long H5E_BADGROUP = H5E_BADGROUP(); + /** Minor error codes - Object header related errors - Iteration failed */ + public static final long H5E_BADITER = H5E_BADITER(); + /** Minor error codes - Object header related errors - Unrecognized message */ public static final long H5E_BADMESG = H5E_BADMESG(); + /** Minor error codes - Argument errors - Out of range */ public static final long H5E_BADRANGE = H5E_BADRANGE(); + /** Minor error codes - Dataspace errors - Invalid selection */ public static final long H5E_BADSELECT = H5E_BADSELECT(); + /** Datatype conversion errors - Bad size for object */ public static final long H5E_BADSIZE = H5E_BADSIZE(); + /** Minor error codes - Argument errors - Inappropriate type */ public static final long H5E_BADTYPE = H5E_BADTYPE(); + /** Minor error codes - Argument errors - Bad value */ public static final long H5E_BADVALUE = H5E_BADVALUE(); + /** Major error codes - B-Tree node */ public static final long H5E_BTREE = H5E_BTREE(); + /** Major error codes - Object cache */ public static final long H5E_CACHE = H5E_CACHE(); + /** I/O pipeline errors - Callback failed */ public static final long H5E_CALLBACK = H5E_CALLBACK(); + /** I/O pipeline errors - Error from filter 'can apply' callback */ public static final long H5E_CANAPPLY = H5E_CANAPPLY(); - // public static final long H5E_CANTALLOC = H5E_CANTALLOC(); + /** Minor error codes - Resource errors - Can't allocate space */ + public static final long H5E_CANTALLOC = H5E_CANTALLOC(); + /** Minor error codes - Dataspace errors - Can't append object */ + public static final long H5E_CANTAPPEND = H5E_CANTAPPEND(); + /** Minor error codes - Heap errors - Can't attach object */ + public static final long H5E_CANTATTACH = H5E_CANTATTACH(); + /** Minor error codes - Cache related errors - Unable to mark metadata as clean */ + public static final long H5E_CANTCLEAN = H5E_CANTCLEAN(); + /** Minor error codes - Dataspace errors - Can't clip hyperslab region */ public static final long H5E_CANTCLIP = H5E_CANTCLIP(); + /** Minor error codes - File accessibility errors - Unable to close file */ public static final long H5E_CANTCLOSEFILE = H5E_CANTCLOSEFILE(); + /** Minor error codes - Group related errors - Can't close object */ + public static final long H5E_CANTCLOSEOBJ = H5E_CANTCLOSEOBJ(); + /** Minor error codes - Dataspace errors - Can't compare objects */ + public static final long H5E_CANTCOMPARE = H5E_CANTCOMPARE(); + /** Minor error codes - Heap errors - Can't compute value */ + public static final long H5E_CANTCOMPUTE = H5E_CANTCOMPUTE(); + /** Datatype conversion errors - Can't convert datatypes */ public static final long H5E_CANTCONVERT = H5E_CANTCONVERT(); + /** Minor error codes - Resource errors - Unable to copy object */ public static final long H5E_CANTCOPY = H5E_CANTCOPY(); + /** Minor error codes - Cache related errors - Unable to cork an object */ + public static final long H5E_CANTCORK = H5E_CANTCORK(); + /** Minor error codes - Dataspace errors - Can't count elements */ public static final long H5E_CANTCOUNT = H5E_CANTCOUNT(); + /** Minor error codes - File accessibility errors - Unable to create file */ public static final long H5E_CANTCREATE = H5E_CANTCREATE(); + /** Minor error codes - Object ID related errors - Unable to decrement reference count */ public static final long H5E_CANTDEC = H5E_CANTDEC(); + /** Minor error codes - B-tree related errors - Unable to decode value */ public static final long H5E_CANTDECODE = H5E_CANTDECODE(); + /** Minor error codes - Object header related errors - Can't delete message */ public static final long H5E_CANTDELETE = H5E_CANTDELETE(); + /** Minor error codes - File accessibility errors - Unable to delete file */ public static final long H5E_CANTDELETEFILE = H5E_CANTDELETEFILE(); + /** Minor error codes - Cache related errors - Unable to create a flush dependency */ + public static final long H5E_CANTDEPEND = H5E_CANTDEPEND(); + /** Minor error codes - Cache related errors - Unable to mark metadata as dirty */ + public static final long H5E_CANTDIRTY = H5E_CANTDIRTY(); + /** Minor error codes - B-tree related errors - Unable to encode value */ public static final long H5E_CANTENCODE = H5E_CANTENCODE(); + /** Minor error codes - Cache related errors - Unable to expunge a metadata cache entry */ + public static final long H5E_CANTEXPUNGE = H5E_CANTEXPUNGE(); + /** Minor error codes - Heap errors - Can't extend heap's space */ + public static final long H5E_CANTEXTEND = H5E_CANTEXTEND(); + /** I/O pipeline errors - Filter operation failed */ + public static final long H5E_CANTFILTER = H5E_CANTFILTER(); + /** Minor error codes - Cache related errors - Unable to flush data from cache */ public static final long H5E_CANTFLUSH = H5E_CANTFLUSH(); + /** Minor error codes - Resource errors - Unable to free object */ public static final long H5E_CANTFREE = H5E_CANTFREE(); + /** Minor error codes - Parallel MPI - Can't gather data */ + public static final long H5E_CANTGATHER = H5E_CANTGATHER(); + /** Minor error codes - Resource errors - Unable to garbage collect */ + public static final long H5E_CANTGC = H5E_CANTGC(); + /** Minor error codes - Property list errors - Can't get value */ public static final long H5E_CANTGET = H5E_CANTGET(); + /** Minor error codes - Resource errors - Unable to compute size */ + public static final long H5E_CANTGETSIZE = H5E_CANTGETSIZE(); + /** Minor error codes - Object ID related errors - Unable to increment reference count */ public static final long H5E_CANTINC = H5E_CANTINC(); + /** Minor error codes - Function entry/exit interface - Unable to initialize object */ public static final long H5E_CANTINIT = H5E_CANTINIT(); + /** Minor error codes - Cache related errors - Unable to insert metadata into cache */ + public static final long H5E_CANTINS = H5E_CANTINS(); + /** Minor error codes - B-tree related errors - Unable to insert object */ public static final long H5E_CANTINSERT = H5E_CANTINSERT(); + /** Minor error codes - B-tree related errors - Unable to list node */ public static final long H5E_CANTLIST = H5E_CANTLIST(); + /** Minor error codes - Cache related errors - Unable to load metadata into cache */ public static final long H5E_CANTLOAD = H5E_CANTLOAD(); + /** Minor error codes - Resource errors - Unable to lock object */ public static final long H5E_CANTLOCK = H5E_CANTLOCK(); + /** Minor error codes - File accessibility errors Unable to lock file */ + public static final long H5E_CANTLOCKFILE = H5E_CANTLOCKFILE(); + /** Minor error codes - Cache related errors - Unable to mark a pinned entry as clean */ + public static final long H5E_CANTMARKCLEAN = H5E_CANTMARKCLEAN(); + /** Minor error codes - Cache related errors - Unable to mark a pinned entry as dirty */ + public static final long H5E_CANTMARKDIRTY = H5E_CANTMARKDIRTY(); + /** Minor error codes - Cache related errors - Unable to mark an entry as unserialized */ + public static final long H5E_CANTMARKSERIALIZED = H5E_CANTMARKSERIALIZED(); + /** Minor error codes - Cache related errors - Unable to mark an entry as serialized */ + public static final long H5E_CANTMARKUNSERIALIZED = H5E_CANTMARKUNSERIALIZED(); + /** Minor error codes - Free space errors - Can't merge objects */ + public static final long H5E_CANTMERGE = H5E_CANTMERGE(); + /** Minor error codes - B-tree related errors - Unable to modify record */ + public static final long H5E_CANTMODIFY = H5E_CANTMODIFY(); + /** Minor error codes - Link related errors - Can't move object */ + public static final long H5E_CANTMOVE = H5E_CANTMOVE(); + /** Minor error codes - Dataspace errors - Can't move to next iterator location */ public static final long H5E_CANTNEXT = H5E_CANTNEXT(); + /** Minor error codes - Cache related errors - Unable to notify object about action */ + public static final long H5E_CANTNOTIFY = H5E_CANTNOTIFY(); + /** Minor error codes - File accessibility errors - Unable to open file */ public static final long H5E_CANTOPENFILE = H5E_CANTOPENFILE(); + /** Minor error codes - Group related errors - Can't open object */ public static final long H5E_CANTOPENOBJ = H5E_CANTOPENOBJ(); - // public static final long H5E_CANTRECV = H5E_CANTRECV(); + /** Minor error codes - Heap errors - Can't operate on object */ + public static final long H5E_CANTOPERATE = H5E_CANTOPERATE(); + /** Minor error codes - Object header related errors - Can't pack messages */ + public static final long H5E_CANTPACK = H5E_CANTPACK(); + /** Minor error codes - Cache related errors - Unable to pin cache entry */ + public static final long H5E_CANTPIN = H5E_CANTPIN(); + /** Minor error codes - Cache related errors - Unable to protect metadata */ + public static final long H5E_CANTPROTECT = H5E_CANTPROTECT(); + /** Minor error codes - Parallel MPI - Can't receive data */ + public static final long H5E_CANTRECV = H5E_CANTRECV(); + /** Minor error codes - B-tree related errors - Unable to redistribute records */ + public static final long H5E_CANTREDISTRIBUTE = H5E_CANTREDISTRIBUTE(); + /** Minor error codes - Object ID related errors - Unable to register new ID */ public static final long H5E_CANTREGISTER = H5E_CANTREGISTER(); + /** Minor error codes - Function entry/exit interface - Unable to release object */ public static final long H5E_CANTRELEASE = H5E_CANTRELEASE(); + /** Minor error codes - B-tree related errors - Unable to remove object */ + public static final long H5E_CANTREMOVE = H5E_CANTREMOVE(); + /** Minor error codes - Object header related errors - Unable to rename object */ + public static final long H5E_CANTRENAME = H5E_CANTRENAME(); + /** Minor error codes - Object header related errors - Can't reset object */ + public static final long H5E_CANTRESET = H5E_CANTRESET(); + /** Minor error codes - Cache related errors - Unable to resize a metadata cache entry */ + public static final long H5E_CANTRESIZE = H5E_CANTRESIZE(); + /** Minor error codes - Heap errors - Can't restore condition */ + public static final long H5E_CANTRESTORE = H5E_CANTRESTORE(); + /** Minor error codes - Free space errors - Can't revive object */ + public static final long H5E_CANTREVIVE = H5E_CANTREVIVE(); + /** Minor error codes - Free space errors - Can't shrink container */ + public static final long H5E_CANTSHRINK = H5E_CANTSHRINK(); + /** Minor error codes - Dataspace errors - Can't select hyperslab */ public static final long H5E_CANTSELECT = H5E_CANTSELECT(); + /** Minor error codes - Cache related errors - Unable to serialize data from cache */ + public static final long H5E_CANTSERIALIZE = H5E_CANTSERIALIZE(); + /** Minor error codes - Property list errors - Can't set value */ public static final long H5E_CANTSET = H5E_CANTSET(); + /** Minor error codes - Link related errors - Can't sort objects */ + public static final long H5E_CANTSORT = H5E_CANTSORT(); + /** Minor error codes - B-tree related errors - Unable to split node */ public static final long H5E_CANTSPLIT = H5E_CANTSPLIT(); + /** Minor error codes - B-tree related errors - Unable to swap records */ + public static final long H5E_CANTSWAP = H5E_CANTSWAP(); + /** Minor error codes - Cache related errors - Unable to tag metadata in the cache */ + public static final long H5E_CANTTAG = H5E_CANTTAG(); + /** Minor error codes - Cache related errors - Unable to uncork an object */ + public static final long H5E_CANTUNCORK = H5E_CANTUNCORK(); + /** Minor error codes - Cache related errors - Unable to destroy a flush dependency */ + public static final long H5E_CANTUNDEPEND = H5E_CANTUNDEPEND(); + /** Minor error codes - Resource errors - Unable to unlock object */ public static final long H5E_CANTUNLOCK = H5E_CANTUNLOCK(); + /** Minor error codes - File accessibility errors Unable to unlock file */ + public static final long H5E_CANTUNLOCKFILE = H5E_CANTUNLOCKFILE(); + /** Minor error codes - Cache related errors - Unable to un-pin cache entry */ + public static final long H5E_CANTUNPIN = H5E_CANTUNPIN(); + /** Minor error codes - Cache related errors - Unable to unprotect metadata */ + public static final long H5E_CANTUNPROTECT = H5E_CANTUNPROTECT(); + /** Minor error codes - Cache related errors - Unable to mark metadata as unserialized */ + public static final long H5E_CANTUNSERIALIZE = H5E_CANTUNSERIALIZE(); + /** Minor error codes - Heap errors - Can't update object */ + public static final long H5E_CANTUPDATE = H5E_CANTUPDATE(); + /** Generic low-level file I/O errors - Close failed */ public static final long H5E_CLOSEERROR = H5E_CLOSEERROR(); + /** Minor error codes - Group related errors - Name component is too long */ public static final long H5E_COMPLEN = H5E_COMPLEN(); + /** Major error codes - API Context */ + public static final long H5E_CONTEXT = H5E_CONTEXT(); + /** Major error codes - Dataset */ public static final long H5E_DATASET = H5E_DATASET(); + /** Major error codes - Dataspace */ public static final long H5E_DATASPACE = H5E_DATASPACE(); + /** Major error codes - Datatype */ public static final long H5E_DATATYPE = H5E_DATATYPE(); + /** Value for the default error stack */ public static final long H5E_DEFAULT = H5E_DEFAULT(); + /** Minor error codes - Property list errors - Duplicate class name in parent class */ public static final long H5E_DUPCLASS = H5E_DUPCLASS(); + /** Major error codes - Extensible Array */ + public static final long H5E_EARRAY = H5E_EARRAY(); + /** Major error codes - External file list */ public static final long H5E_EFL = H5E_EFL(); + /** Major error codes - Error API */ + public static final long H5E_ERROR = H5E_ERROR(); + /** Minor error codes - B-tree related errors - Object already exists */ public static final long H5E_EXISTS = H5E_EXISTS(); + /** Major error codes - Fixed Array */ + public static final long H5E_FARRAY = H5E_FARRAY(); + /** Generic low-level file I/O errors - File control (fcntl) failed */ public static final long H5E_FCNTL = H5E_FCNTL(); + /** Major error codes - File accessibility */ public static final long H5E_FILE = H5E_FILE(); + /** Minor error codes - File accessibility errors - File already exists */ public static final long H5E_FILEEXISTS = H5E_FILEEXISTS(); + /** Minor error codes - File accessibility errors - File already open */ public static final long H5E_FILEOPEN = H5E_FILEOPEN(); + /** Major error codes - Free Space Manager */ + public static final long H5E_FSPACE = H5E_FSPACE(); + /** Major error codes - Function entry/exit */ public static final long H5E_FUNC = H5E_FUNC(); + /** Major error codes - Heap */ public static final long H5E_HEAP = H5E_HEAP(); + /** Minor error codes - Dataspace errors - Internal states are inconsistent */ + public static final long H5E_INCONSISTENTSTATE = H5E_INCONSISTENTSTATE(); + /** Major error codes - Internal error (too specific to document in detail) */ public static final long H5E_INTERNAL = H5E_INTERNAL(); + /** Major error codes - Low-level I/O */ public static final long H5E_IO = H5E_IO(); + /** Major error codes - Links */ public static final long H5E_LINK = H5E_LINK(); + /** Minor error codes - Object header related errors - Bad object header link count */ public static final long H5E_LINKCOUNT = H5E_LINKCOUNT(); + /** Minor error codes - Cache related errors - Failure in the cache logging framework */ + public static final long H5E_LOGGING = H5E_LOGGING(); + /** Major error codes - Map */ + public static final long H5E_MAP = H5E_MAP(); + /** Minor error codes - File accessibility errors - File mount error */ public static final long H5E_MOUNT = H5E_MOUNT(); + /** Minor error codes - Parallel MPI - Some MPI function failed */ public static final long H5E_MPI = H5E_MPI(); + /** Minor error codes - Parallel MPI - MPI Error String */ public static final long H5E_MPIERRSTR = H5E_MPIERRSTR(); + /** Minor error codes - Link related errors - Too many soft links in path */ + public static final long H5E_NLINKS = H5E_NLINKS(); + /** Minor error codes - Parallel MPI - Can't perform independent IO */ + public static final long H5E_NO_INDEPENDENT = H5E_NO_INDEPENDENT(); + /** I/O pipeline errors - Filter present but encoding disabled */ + public static final long H5E_NOENCODER = H5E_NOENCODER(); + /** I/O pipeline errors - Requested filter is not available */ public static final long H5E_NOFILTER = H5E_NOFILTER(); + /** Minor error codes - Object ID related errors - Out of IDs for group */ public static final long H5E_NOIDS = H5E_NOIDS(); + /** Major error codes - No error */ public static final long H5E_NONE_MAJOR = H5E_NONE_MAJOR(); + /** No error */ public static final long H5E_NONE_MINOR = H5E_NONE_MINOR(); + /** Minor error codes - Resource errors - No space available for allocation */ public static final long H5E_NOSPACE = H5E_NOSPACE(); + /** Minor error codes - Cache related errors - Metadata not currently cached */ public static final long H5E_NOTCACHED = H5E_NOTCACHED(); + /** Minor error codes - B-tree related errors - Object not found */ public static final long H5E_NOTFOUND = H5E_NOTFOUND(); + /** Minor error codes - File accessibility errors - Not an HDF5 file */ public static final long H5E_NOTHDF5 = H5E_NOTHDF5(); + /** Minor error codes - Link related errors - Link class not registered */ + public static final long H5E_NOTREGISTERED = H5E_NOTREGISTERED(); + /** Minor error codes - Resource errors - Object is already open */ + public static final long H5E_OBJOPEN = H5E_OBJOPEN(); + /** Major error codes - Object header */ public static final long H5E_OHDR = H5E_OHDR(); + /** Minor error codes - Plugin errors - Can't open directory or file */ + public static final long H5E_OPENERROR = H5E_OPENERROR(); + /** Generic low-level file I/O errors - Address overflowed */ public static final long H5E_OVERFLOW = H5E_OVERFLOW(); + /** Major error codes - Page Buffering */ + public static final long H5E_PAGEBUF = H5E_PAGEBUF(); + /** Minor error codes - Group related errors - Problem with path to object */ + public static final long H5E_PATH = H5E_PATH(); + /** Major error codes - Data filters */ public static final long H5E_PLINE = H5E_PLINE(); + /** Major error codes - Property lists */ public static final long H5E_PLIST = H5E_PLIST(); + /** Major error codes - Plugin for dynamically loaded library */ + public static final long H5E_PLUGIN = H5E_PLUGIN(); + /** Minor error codes - Cache related errors - Protected metadata error */ public static final long H5E_PROTECT = H5E_PROTECT(); + /** Generic low-level file I/O errors - Read failed */ public static final long H5E_READERROR = H5E_READERROR(); + /** Major error codes - References */ public static final long H5E_REFERENCE = H5E_REFERENCE(); + /** Major error codes - Resource unavailable */ public static final long H5E_RESOURCE = H5E_RESOURCE(); + /** Major error codes - Reference Counted Strings */ public static final long H5E_RS = H5E_RS(); + /** Generic low-level file I/O errors - Seek failed */ public static final long H5E_SEEKERROR = H5E_SEEKERROR(); + /** Minor error codes - Property list errors - Disallowed operation */ + public static final long H5E_SETDISALLOWED = H5E_SETDISALLOWED(); + /** I/O pipeline errors - Error from filter 'set local' callback */ public static final long H5E_SETLOCAL = H5E_SETLOCAL(); + /** Major error codes - Skip Lists */ + public static final long H5E_SLIST = H5E_SLIST(); + /** Major error codes - Shared Object Header Messages */ + public static final long H5E_SOHM = H5E_SOHM(); + /** Major error codes - Data storage */ public static final long H5E_STORAGE = H5E_STORAGE(); + /** Major error codes - Symbol table */ public static final long H5E_SYM = H5E_SYM(); + /** Minor error codes - System level errors - System error message */ + public static final long H5E_SYSERRSTR = H5E_SYSERRSTR(); + /** Minor error codes - Cache related errors - Internal error detected */ + public static final long H5E_SYSTEM = H5E_SYSTEM(); + /** Minor error codes - Link related errors - Link traversal failure */ + public static final long H5E_TRAVERSE = H5E_TRAVERSE(); + /** Minor error codes - File accessibility errors - File has been truncated */ public static final long H5E_TRUNCATED = H5E_TRUNCATED(); + /** Major error codes - Ternary Search Trees */ public static final long H5E_TST = H5E_TST(); + /** Minor error codes - Argument errors - Information is uinitialized */ public static final long H5E_UNINITIALIZED = H5E_UNINITIALIZED(); + /** Minor error codes - Argument errors - Feature is unsupported */ public static final long H5E_UNSUPPORTED = H5E_UNSUPPORTED(); + /** Minor error codes - Object header related errors - Wrong version number */ public static final long H5E_VERSION = H5E_VERSION(); + /** Major error codes - Virtual File Layer */ public static final long H5E_VFL = H5E_VFL(); + /** Major error codes - Virtual Object Layer */ public static final long H5E_VOL = H5E_VOL(); + /** Error stack traversal direction - begin at API function, end deep */ public static final long H5E_WALK_DOWNWARD = H5E_WALK_DOWNWARD(); + /** Error stack traversal direction - begin deep, end at API function */ public static final long H5E_WALK_UPWARD = H5E_WALK_UPWARD(); + /** Generic low-level file I/O errors - Write failed */ public static final long H5E_WRITEERROR = H5E_WRITEERROR(); + /** */ private static final int H5ES_STATUS_IN_PROGRESS = H5ES_STATUS_IN_PROGRESS(); + /** */ private static final int H5ES_STATUS_SUCCEED = H5ES_STATUS_SUCCEED(); + /** */ private static final int H5ES_STATUS_FAIL = H5ES_STATUS_FAIL(); - private static final int H5ES_STATUS_CANCELED = H5ES_STATUS_CANCELED(); + /** */ public static final int H5F_ACC_CREAT = H5F_ACC_CREAT(); + /** */ public static final int H5F_ACC_EXCL = H5F_ACC_EXCL(); + /** */ public static final int H5F_ACC_RDONLY = H5F_ACC_RDONLY(); + /** */ public static final int H5F_ACC_RDWR = H5F_ACC_RDWR(); + /** */ public static final int H5F_ACC_TRUNC = H5F_ACC_TRUNC(); + /** */ public static final int H5F_ACC_DEFAULT = H5F_ACC_DEFAULT(); + /** */ public static final int H5F_ACC_SWMR_READ = H5F_ACC_SWMR_READ(); + /** */ public static final int H5F_ACC_SWMR_WRITE = H5F_ACC_SWMR_WRITE(); + /** */ public static final int H5F_CLOSE_DEFAULT = H5F_CLOSE_DEFAULT(); + /** */ public static final int H5F_CLOSE_SEMI = H5F_CLOSE_SEMI(); + /** */ public static final int H5F_CLOSE_STRONG = H5F_CLOSE_STRONG(); + /** */ public static final int H5F_CLOSE_WEAK = H5F_CLOSE_WEAK(); + /** */ public static final int H5F_LIBVER_ERROR = H5F_LIBVER_ERROR(); + /** */ public static final int H5F_LIBVER_EARLIEST = H5F_LIBVER_EARLIEST(); + /** */ public static final int H5F_LIBVER_V18 = H5F_LIBVER_V18(); + /** */ public static final int H5F_LIBVER_V110 = H5F_LIBVER_V110(); + /** */ public static final int H5F_LIBVER_V112 = H5F_LIBVER_V112(); + /** */ + public static final int H5F_LIBVER_V114 = H5F_LIBVER_V114(); + /** */ public static final int H5F_LIBVER_NBOUNDS = H5F_LIBVER_NBOUNDS(); + /** */ public static final int H5F_LIBVER_LATEST = H5F_LIBVER_LATEST(); + /** */ public static final int H5F_OBJ_ALL = H5F_OBJ_ALL(); + /** */ public static final int H5F_OBJ_ATTR = H5F_OBJ_ATTR(); + /** */ public static final int H5F_OBJ_DATASET = H5F_OBJ_DATASET(); + /** */ public static final int H5F_OBJ_DATATYPE = H5F_OBJ_DATATYPE(); + /** */ public static final int H5F_OBJ_FILE = H5F_OBJ_FILE(); + /** */ public static final int H5F_OBJ_GROUP = H5F_OBJ_GROUP(); + /** */ public static final int H5F_OBJ_LOCAL = H5F_OBJ_LOCAL(); + /** */ public static final int H5F_SCOPE_GLOBAL = H5F_SCOPE_GLOBAL(); + /** */ public static final int H5F_SCOPE_LOCAL = H5F_SCOPE_LOCAL(); + /** */ public static final int H5F_UNLIMITED = H5F_UNLIMITED(); + /** */ public static final int H5F_FSPACE_STRATEGY_FSM_AGGR = H5F_FSPACE_STRATEGY_FSM_AGGR(); + /** */ public static final int H5F_FSPACE_STRATEGY_AGGR = H5F_FSPACE_STRATEGY_AGGR(); + /** */ public static final int H5F_FSPACE_STRATEGY_PAGE = H5F_FSPACE_STRATEGY_PAGE(); + /** */ public static final int H5F_FSPACE_STRATEGY_NONE = H5F_FSPACE_STRATEGY_NONE(); + /** */ public static final int H5F_FSPACE_STRATEGY_NTYPES = H5F_FSPACE_STRATEGY_NTYPES(); + /** */ public static final long H5FD_CORE = H5FD_CORE(); + /** */ public static final long H5FD_DIRECT = H5FD_DIRECT(); + /** */ public static final long H5FD_FAMILY = H5FD_FAMILY(); + /** */ public static final long H5FD_LOG = H5FD_LOG(); + /** */ public static final long H5FD_MPIO = H5FD_MPIO(); + /** */ public static final long H5FD_MULTI = H5FD_MULTI(); + /** */ public static final long H5FD_SEC2 = H5FD_SEC2(); + /** */ public static final long H5FD_STDIO = H5FD_STDIO(); + /** */ public static final long H5FD_WINDOWS = H5FD_WINDOWS(); + /** */ public static final long H5FD_ROS3 = H5FD_ROS3(); + /** */ public static final long H5FD_HDFS = H5FD_HDFS(); + /** */ public static final int H5FD_LOG_LOC_READ = H5FD_LOG_LOC_READ(); + /** */ public static final int H5FD_LOG_LOC_WRITE = H5FD_LOG_LOC_WRITE(); + /** */ public static final int H5FD_LOG_LOC_SEEK = H5FD_LOG_LOC_SEEK(); + /** */ public static final int H5FD_LOG_LOC_IO = H5FD_LOG_LOC_IO(); + /** */ public static final int H5FD_LOG_FILE_READ = H5FD_LOG_FILE_READ(); + /** */ public static final int H5FD_LOG_FILE_WRITE = H5FD_LOG_FILE_WRITE(); + /** */ public static final int H5FD_LOG_FILE_IO = H5FD_LOG_FILE_IO(); + /** */ public static final int H5FD_LOG_FLAVOR = H5FD_LOG_FLAVOR(); + /** */ public static final int H5FD_LOG_NUM_READ = H5FD_LOG_NUM_READ(); + /** */ public static final int H5FD_LOG_NUM_WRITE = H5FD_LOG_NUM_WRITE(); + /** */ public static final int H5FD_LOG_NUM_SEEK = H5FD_LOG_NUM_SEEK(); + /** */ public static final int H5FD_LOG_NUM_TRUNCATE = H5FD_LOG_NUM_TRUNCATE(); + /** */ public static final int H5FD_LOG_NUM_IO = H5FD_LOG_NUM_IO(); + /** */ public static final int H5FD_LOG_TIME_OPEN = H5FD_LOG_TIME_OPEN(); + /** */ public static final int H5FD_LOG_TIME_STAT = H5FD_LOG_TIME_STAT(); + /** */ public static final int H5FD_LOG_TIME_READ = H5FD_LOG_TIME_READ(); + /** */ public static final int H5FD_LOG_TIME_WRITE = H5FD_LOG_TIME_WRITE(); + /** */ public static final int H5FD_LOG_TIME_SEEK = H5FD_LOG_TIME_SEEK(); + /** */ public static final int H5FD_LOG_TIME_CLOSE = H5FD_LOG_TIME_CLOSE(); + /** */ public static final int H5FD_LOG_TIME_IO = H5FD_LOG_TIME_IO(); + /** */ public static final int H5FD_LOG_ALLOC = H5FD_LOG_ALLOC(); + /** */ public static final int H5FD_LOG_ALL = H5FD_LOG_ALL(); + /** */ public static final int H5FD_MEM_NOLIST = H5FD_MEM_NOLIST(); + /** */ public static final int H5FD_MEM_DEFAULT = H5FD_MEM_DEFAULT(); + /** */ public static final int H5FD_MEM_SUPER = H5FD_MEM_SUPER(); + /** */ public static final int H5FD_MEM_BTREE = H5FD_MEM_BTREE(); + /** */ public static final int H5FD_MEM_DRAW = H5FD_MEM_DRAW(); + /** */ public static final int H5FD_MEM_GHEAP = H5FD_MEM_GHEAP(); + /** */ public static final int H5FD_MEM_LHEAP = H5FD_MEM_LHEAP(); + /** */ public static final int H5FD_MEM_OHDR = H5FD_MEM_OHDR(); + /** */ public static final int H5FD_MEM_NTYPES = H5FD_MEM_NTYPES(); + /** */ public static final long H5FD_DEFAULT_HADDR_SIZE = H5FD_DEFAULT_HADDR_SIZE(); + /** */ public static final long H5FD_MEM_DEFAULT_SIZE = H5FD_MEM_DEFAULT_SIZE(); + /** */ public static final long H5FD_MEM_DEFAULT_SUPER_SIZE = H5FD_MEM_DEFAULT_SUPER_SIZE(); + /** */ public static final long H5FD_MEM_DEFAULT_BTREE_SIZE = H5FD_MEM_DEFAULT_BTREE_SIZE(); + /** */ public static final long H5FD_MEM_DEFAULT_DRAW_SIZE = H5FD_MEM_DEFAULT_DRAW_SIZE(); + /** */ public static final long H5FD_MEM_DEFAULT_GHEAP_SIZE = H5FD_MEM_DEFAULT_GHEAP_SIZE(); + /** */ public static final long H5FD_MEM_DEFAULT_LHEAP_SIZE = H5FD_MEM_DEFAULT_LHEAP_SIZE(); + /** */ public static final long H5FD_MEM_DEFAULT_OHDR_SIZE = H5FD_MEM_DEFAULT_OHDR_SIZE(); // public static final int H5G_DATASET = H5G_DATASET(); @@ -305,394 +698,802 @@ public class HDF5Constants { // public static final int H5G_TYPE = H5G_TYPE(); // public static final int H5G_UNKNOWN = H5G_UNKNOWN(); + /** */ public static final int H5G_STORAGE_TYPE_UNKNOWN = H5G_STORAGE_TYPE_UNKNOWN(); + /** */ public static final int H5G_STORAGE_TYPE_SYMBOL_TABLE = H5G_STORAGE_TYPE_SYMBOL_TABLE(); + /** */ public static final int H5G_STORAGE_TYPE_COMPACT = H5G_STORAGE_TYPE_COMPACT(); + /** */ public static final int H5G_STORAGE_TYPE_DENSE = H5G_STORAGE_TYPE_DENSE(); + /** */ public static final int H5I_ATTR = H5I_ATTR(); + /** */ public static final int H5I_BADID = H5I_BADID(); + /** */ public static final int H5I_DATASET = H5I_DATASET(); + /** */ public static final int H5I_DATASPACE = H5I_DATASPACE(); + /** */ public static final int H5I_DATATYPE = H5I_DATATYPE(); + /** */ public static final int H5I_ERROR_CLASS = H5I_ERROR_CLASS(); + /** */ public static final int H5I_ERROR_MSG = H5I_ERROR_MSG(); + /** */ public static final int H5I_ERROR_STACK = H5I_ERROR_STACK(); + /** */ public static final int H5I_FILE = H5I_FILE(); + /** */ public static final int H5I_GENPROP_CLS = H5I_GENPROP_CLS(); + /** */ public static final int H5I_GENPROP_LST = H5I_GENPROP_LST(); + /** */ public static final int H5I_GROUP = H5I_GROUP(); + /** */ public static final int H5I_INVALID_HID = H5I_INVALID_HID(); + /** */ public static final int H5I_NTYPES = H5I_NTYPES(); + /** */ public static final int H5I_UNINIT = H5I_UNINIT(); + /** */ public static final int H5I_VFL = H5I_VFL(); + /** */ public static final int H5I_VOL = H5I_VOL(); + /** */ public static final int H5L_TYPE_ERROR = H5L_TYPE_ERROR(); + /** */ public static final int H5L_TYPE_HARD = H5L_TYPE_HARD(); + /** */ public static final int H5L_TYPE_SOFT = H5L_TYPE_SOFT(); + /** */ public static final int H5L_TYPE_EXTERNAL = H5L_TYPE_EXTERNAL(); + /** */ public static final int H5L_TYPE_MAX = H5L_TYPE_MAX(); + /** */ public static final int H5O_COPY_SHALLOW_HIERARCHY_FLAG = H5O_COPY_SHALLOW_HIERARCHY_FLAG(); + /** */ public static final int H5O_COPY_EXPAND_SOFT_LINK_FLAG = H5O_COPY_EXPAND_SOFT_LINK_FLAG(); + /** */ public static final int H5O_COPY_EXPAND_EXT_LINK_FLAG = H5O_COPY_EXPAND_EXT_LINK_FLAG(); + /** */ public static final int H5O_COPY_EXPAND_REFERENCE_FLAG = H5O_COPY_EXPAND_REFERENCE_FLAG(); + /** */ public static final int H5O_COPY_WITHOUT_ATTR_FLAG = H5O_COPY_WITHOUT_ATTR_FLAG(); + /** */ public static final int H5O_COPY_PRESERVE_NULL_FLAG = H5O_COPY_PRESERVE_NULL_FLAG(); + /** */ public static final int H5O_INFO_BASIC = H5O_INFO_BASIC(); + /** */ public static final int H5O_INFO_TIME = H5O_INFO_TIME(); + /** */ public static final int H5O_INFO_NUM_ATTRS = H5O_INFO_NUM_ATTRS(); - public static final int H5O_INFO_HDR = H5O_INFO_HDR(); - public static final int H5O_INFO_META_SIZE = H5O_INFO_META_SIZE(); + /** */ public static final int H5O_INFO_ALL = H5O_INFO_ALL(); + /** */ + public static final int H5O_NATIVE_INFO_HDR = H5O_NATIVE_INFO_HDR(); + /** */ + public static final int H5O_NATIVE_INFO_META_SIZE = H5O_NATIVE_INFO_META_SIZE(); + /** */ + public static final int H5O_NATIVE_INFO_ALL = H5O_NATIVE_INFO_ALL(); + /** */ public static final int H5O_SHMESG_NONE_FLAG = H5O_SHMESG_NONE_FLAG(); + /** */ public static final int H5O_SHMESG_SDSPACE_FLAG = H5O_SHMESG_SDSPACE_FLAG(); + /** */ public static final int H5O_SHMESG_DTYPE_FLAG = H5O_SHMESG_DTYPE_FLAG(); + /** */ public static final int H5O_SHMESG_FILL_FLAG = H5O_SHMESG_FILL_FLAG(); + /** */ public static final int H5O_SHMESG_PLINE_FLAG = H5O_SHMESG_PLINE_FLAG(); + /** */ public static final int H5O_SHMESG_ATTR_FLAG = H5O_SHMESG_ATTR_FLAG(); + /** */ public static final int H5O_SHMESG_ALL_FLAG = H5O_SHMESG_ALL_FLAG(); + /** */ public static final int H5O_TYPE_UNKNOWN = H5O_TYPE_UNKNOWN(); + /** */ public static final int H5O_TYPE_GROUP = H5O_TYPE_GROUP(); + /** */ public static final int H5O_TYPE_DATASET = H5O_TYPE_DATASET(); + /** */ public static final int H5O_TYPE_NAMED_DATATYPE = H5O_TYPE_NAMED_DATATYPE(); + /** */ public static final int H5O_TYPE_NTYPES = H5O_TYPE_NTYPES(); + /** */ + public static final int H5O_MAX_TOKEN_SIZE = H5O_MAX_TOKEN_SIZE(); + /** */ + public static final H5O_token_t H5O_TOKEN_UNDEF = H5O_TOKEN_UNDEF(); + /** */ public static final long H5P_ROOT = H5P_ROOT(); + /** */ public static final long H5P_OBJECT_CREATE = H5P_OBJECT_CREATE(); + /** */ public static final long H5P_FILE_CREATE = H5P_FILE_CREATE(); + /** */ public static final long H5P_FILE_ACCESS = H5P_FILE_ACCESS(); + /** */ public static final long H5P_DATASET_CREATE = H5P_DATASET_CREATE(); + /** */ public static final long H5P_DATASET_ACCESS = H5P_DATASET_ACCESS(); + /** */ public static final long H5P_DATASET_XFER = H5P_DATASET_XFER(); + /** */ public static final long H5P_FILE_MOUNT = H5P_FILE_MOUNT(); + /** */ public static final long H5P_GROUP_CREATE = H5P_GROUP_CREATE(); + /** */ public static final long H5P_GROUP_ACCESS = H5P_GROUP_ACCESS(); + /** */ public static final long H5P_DATATYPE_CREATE = H5P_DATATYPE_CREATE(); + /** */ public static final long H5P_DATATYPE_ACCESS = H5P_DATATYPE_ACCESS(); + /** */ public static final long H5P_STRING_CREATE = H5P_STRING_CREATE(); + /** */ public static final long H5P_ATTRIBUTE_CREATE = H5P_ATTRIBUTE_CREATE(); + /** */ public static final long H5P_ATTRIBUTE_ACCESS = H5P_ATTRIBUTE_ACCESS(); + /** */ public static final long H5P_OBJECT_COPY = H5P_OBJECT_COPY(); + /** */ public static final long H5P_LINK_CREATE = H5P_LINK_CREATE(); + /** */ public static final long H5P_LINK_ACCESS = H5P_LINK_ACCESS(); + /** */ public static final long H5P_VOL_INITIALIZE = H5P_VOL_INITIALIZE(); + /** */ public static final long H5P_FILE_CREATE_DEFAULT = H5P_FILE_CREATE_DEFAULT(); + /** */ public static final long H5P_FILE_ACCESS_DEFAULT = H5P_FILE_ACCESS_DEFAULT(); + /** */ public static final long H5P_DATASET_CREATE_DEFAULT = H5P_DATASET_CREATE_DEFAULT(); + /** */ public static final long H5P_DATASET_ACCESS_DEFAULT = H5P_DATASET_ACCESS_DEFAULT(); + /** */ public static final long H5P_DATASET_XFER_DEFAULT = H5P_DATASET_XFER_DEFAULT(); + /** */ public static final long H5P_FILE_MOUNT_DEFAULT = H5P_FILE_MOUNT_DEFAULT(); + /** */ public static final long H5P_GROUP_CREATE_DEFAULT = H5P_GROUP_CREATE_DEFAULT(); + /** */ public static final long H5P_GROUP_ACCESS_DEFAULT = H5P_GROUP_ACCESS_DEFAULT(); + /** */ public static final long H5P_DATATYPE_CREATE_DEFAULT = H5P_DATATYPE_CREATE_DEFAULT(); + /** */ public static final long H5P_DATATYPE_ACCESS_DEFAULT = H5P_DATATYPE_ACCESS_DEFAULT(); + /** */ public static final long H5P_ATTRIBUTE_CREATE_DEFAULT = H5P_ATTRIBUTE_CREATE_DEFAULT(); + /** */ public static final long H5P_ATTRIBUTE_ACCESS_DEFAULT = H5P_ATTRIBUTE_ACCESS_DEFAULT(); + /** */ public static final long H5P_OBJECT_COPY_DEFAULT = H5P_OBJECT_COPY_DEFAULT(); + /** */ public static final long H5P_LINK_CREATE_DEFAULT = H5P_LINK_CREATE_DEFAULT(); + /** */ public static final long H5P_LINK_ACCESS_DEFAULT = H5P_LINK_ACCESS_DEFAULT(); + /** */ public static final long H5P_VOL_INITIALIZE_DEFAULT = H5P_VOL_INITIALIZE_DEFAULT(); + /** */ public static final int H5P_CRT_ORDER_TRACKED = H5P_CRT_ORDER_TRACKED(); + /** */ public static final int H5P_CRT_ORDER_INDEXED = H5P_CRT_ORDER_INDEXED(); + /** */ public static final long H5P_DEFAULT = H5P_DEFAULT(); + /** */ public static final int H5PL_TYPE_ERROR = H5PL_TYPE_ERROR(); + /** */ public static final int H5PL_TYPE_FILTER = H5PL_TYPE_FILTER(); + /** */ public static final int H5PL_TYPE_VOL = H5PL_TYPE_VOL(); + /** */ public static final int H5PL_TYPE_NONE = H5PL_TYPE_NONE(); + /** */ public static final int H5PL_FILTER_PLUGIN = H5PL_FILTER_PLUGIN(); + /** */ public static final int H5PL_VOL_PLUGIN = H5PL_VOL_PLUGIN(); + /** */ public static final int H5PL_ALL_PLUGIN = H5PL_ALL_PLUGIN(); + /** */ + public static final int H5R_ATTR = H5R_ATTR(); + /** */ public static final int H5R_BADTYPE = H5R_BADTYPE(); + /** */ public static final int H5R_DATASET_REGION = H5R_DATASET_REGION(); + /** */ + public static final int H5R_DATASET_REGION1 = H5R_DATASET_REGION1(); + /** */ + public static final int H5R_DATASET_REGION2 = H5R_DATASET_REGION2(); + /** */ public static final int H5R_MAXTYPE = H5R_MAXTYPE(); + /** */ + public static final int H5R_REF_BUF_SIZE = H5R_REF_BUF_SIZE(); + /** */ public static final int H5R_OBJ_REF_BUF_SIZE = H5R_OBJ_REF_BUF_SIZE(); + /** */ public static final int H5R_OBJECT = H5R_OBJECT(); + /** */ + public static final int H5R_OBJECT1 = H5R_OBJECT1(); + /** */ + public static final int H5R_OBJECT2 = H5R_OBJECT2(); + + /** Define atomic datatypes */ public static final int H5S_ALL = H5S_ALL(); + /** Define user-level maximum number of dimensions */ public static final int H5S_MAX_RANK = H5S_MAX_RANK(); + /** Different types of dataspaces - error */ public static final int H5S_NO_CLASS = H5S_NO_CLASS(); + /** Different types of dataspaces - null dataspace */ public static final int H5S_NULL = H5S_NULL(); + /** Different types of dataspaces - scalar variable */ public static final int H5S_SCALAR = H5S_SCALAR(); + /** Enumerated type for the type of selection - Entire extent selected */ public static final int H5S_SEL_ALL = H5S_SEL_ALL(); + /** Enumerated type for the type of selection - Error */ public static final int H5S_SEL_ERROR = H5S_SEL_ERROR(); + /** Enumerated type for the type of selection - Hyperslab selected */ public static final int H5S_SEL_HYPERSLABS = H5S_SEL_HYPERSLABS(); + /** Enumerated type for the type of selection - LAST */ public static final int H5S_SEL_N = H5S_SEL_N(); + /** Enumerated type for the type of selection - Nothing selected */ public static final int H5S_SEL_NONE = H5S_SEL_NONE(); + /** Enumerated type for the type of selection - Points / elements selected */ public static final int H5S_SEL_POINTS = H5S_SEL_POINTS(); + /** Different ways of combining selections - Binary "and" operation for hyperslabs */ public static final int H5S_SELECT_AND = H5S_SELECT_AND(); + /** Different ways of combining selections - Append elements to end of point selection */ public static final int H5S_SELECT_APPEND = H5S_SELECT_APPEND(); + /** Different ways of combining selections - Invalid upper bound on selection operations */ public static final int H5S_SELECT_INVALID = H5S_SELECT_INVALID(); + /** Different ways of combining selections - error */ public static final int H5S_SELECT_NOOP = H5S_SELECT_NOOP(); + /** Different ways of combining selections - Binary "not" operation for hyperslabs */ public static final int H5S_SELECT_NOTA = H5S_SELECT_NOTA(); + /** Different ways of combining selections - Binary "not" operation for hyperslabs */ public static final int H5S_SELECT_NOTB = H5S_SELECT_NOTB(); + /** Different ways of combining selections - Binary "or" operation for hyperslabs */ public static final int H5S_SELECT_OR = H5S_SELECT_OR(); + /** Different ways of combining selections - Prepend elements to beginning of point selection */ public static final int H5S_SELECT_PREPEND = H5S_SELECT_PREPEND(); + /** Different ways of combining selections - Select "set" operation */ public static final int H5S_SELECT_SET = H5S_SELECT_SET(); + /** Different ways of combining selections - Binary "xor" operation for hyperslabs */ public static final int H5S_SELECT_XOR = H5S_SELECT_XOR(); + /** Different types of dataspaces - simple dataspace */ public static final int H5S_SIMPLE = H5S_SIMPLE(); + /** Define atomic datatypes */ public static final int H5S_UNLIMITED = H5S_UNLIMITED(); + + /** */ public static final long H5T_ALPHA_B16 = H5T_ALPHA_B16(); + /** */ public static final long H5T_ALPHA_B32 = H5T_ALPHA_B32(); + /** */ public static final long H5T_ALPHA_B64 = H5T_ALPHA_B64(); + /** */ public static final long H5T_ALPHA_B8 = H5T_ALPHA_B8(); + /** */ public static final long H5T_ALPHA_F32 = H5T_ALPHA_F32(); + /** */ public static final long H5T_ALPHA_F64 = H5T_ALPHA_F64(); + /** */ public static final long H5T_ALPHA_I16 = H5T_ALPHA_I16(); + /** */ public static final long H5T_ALPHA_I32 = H5T_ALPHA_I32(); + /** */ public static final long H5T_ALPHA_I64 = H5T_ALPHA_I64(); + /** */ public static final long H5T_ALPHA_I8 = H5T_ALPHA_I8(); + /** */ public static final long H5T_ALPHA_U16 = H5T_ALPHA_U16(); + /** */ public static final long H5T_ALPHA_U32 = H5T_ALPHA_U32(); + /** */ public static final long H5T_ALPHA_U64 = H5T_ALPHA_U64(); + /** */ public static final long H5T_ALPHA_U8 = H5T_ALPHA_U8(); + /** */ public static final int H5T_ARRAY = H5T_ARRAY(); + /** */ public static final int H5T_BITFIELD = H5T_BITFIELD(); + /** */ public static final int H5T_BKG_NO = H5T_BKG_NO(); + /** */ public static final int H5T_BKG_YES = H5T_BKG_YES(); + /** */ public static final long H5T_C_S1 = H5T_C_S1(); + /** */ public static final int H5T_COMPOUND = H5T_COMPOUND(); + /** */ public static final int H5T_CONV_CONV = H5T_CONV_CONV(); + /** */ public static final int H5T_CONV_FREE = H5T_CONV_FREE(); + /** */ public static final int H5T_CONV_INIT = H5T_CONV_INIT(); + /** */ public static final int H5T_CSET_ERROR = H5T_CSET_ERROR(); + /** */ public static final int H5T_CSET_ASCII = H5T_CSET_ASCII(); + /** */ public static final int H5T_CSET_UTF8 = H5T_CSET_UTF8(); + /** */ public static final int H5T_CSET_RESERVED_10 = H5T_CSET_RESERVED_10(); + /** */ public static final int H5T_CSET_RESERVED_11 = H5T_CSET_RESERVED_11(); + /** */ public static final int H5T_CSET_RESERVED_12 = H5T_CSET_RESERVED_12(); + /** */ public static final int H5T_CSET_RESERVED_13 = H5T_CSET_RESERVED_13(); + /** */ public static final int H5T_CSET_RESERVED_14 = H5T_CSET_RESERVED_14(); + /** */ public static final int H5T_CSET_RESERVED_15 = H5T_CSET_RESERVED_15(); + /** */ public static final int H5T_CSET_RESERVED_2 = H5T_CSET_RESERVED_2(); + /** */ public static final int H5T_CSET_RESERVED_3 = H5T_CSET_RESERVED_3(); + /** */ public static final int H5T_CSET_RESERVED_4 = H5T_CSET_RESERVED_4(); + /** */ public static final int H5T_CSET_RESERVED_5 = H5T_CSET_RESERVED_5(); + /** */ public static final int H5T_CSET_RESERVED_6 = H5T_CSET_RESERVED_6(); + /** */ public static final int H5T_CSET_RESERVED_7 = H5T_CSET_RESERVED_7(); + /** */ public static final int H5T_CSET_RESERVED_8 = H5T_CSET_RESERVED_8(); + /** */ public static final int H5T_CSET_RESERVED_9 = H5T_CSET_RESERVED_9(); + /** */ public static final int H5T_DIR_ASCEND = H5T_DIR_ASCEND(); + /** */ public static final int H5T_DIR_DEFAULT = H5T_DIR_DEFAULT(); + /** */ public static final int H5T_DIR_DESCEND = H5T_DIR_DESCEND(); + /** */ public static final int H5T_ENUM = H5T_ENUM(); + /** */ public static final int H5T_FLOAT = H5T_FLOAT(); + /** */ public static final long H5T_FORTRAN_S1 = H5T_FORTRAN_S1(); + /** */ public static final long H5T_IEEE_F32BE = H5T_IEEE_F32BE(); + /** */ public static final long H5T_IEEE_F32LE = H5T_IEEE_F32LE(); + /** */ public static final long H5T_IEEE_F64BE = H5T_IEEE_F64BE(); + /** */ public static final long H5T_IEEE_F64LE = H5T_IEEE_F64LE(); + /** */ public static final int H5T_INTEGER = H5T_INTEGER(); + /** */ public static final long H5T_INTEL_B16 = H5T_INTEL_B16(); + /** */ public static final long H5T_INTEL_B32 = H5T_INTEL_B32(); + /** */ public static final long H5T_INTEL_B64 = H5T_INTEL_B64(); + /** */ public static final long H5T_INTEL_B8 = H5T_INTEL_B8(); + /** */ public static final long H5T_INTEL_F32 = H5T_INTEL_F32(); + /** */ public static final long H5T_INTEL_F64 = H5T_INTEL_F64(); + /** */ public static final long H5T_INTEL_I16 = H5T_INTEL_I16(); + /** */ public static final long H5T_INTEL_I32 = H5T_INTEL_I32(); + /** */ public static final long H5T_INTEL_I64 = H5T_INTEL_I64(); + /** */ public static final long H5T_INTEL_I8 = H5T_INTEL_I8(); + /** */ public static final long H5T_INTEL_U16 = H5T_INTEL_U16(); + /** */ public static final long H5T_INTEL_U32 = H5T_INTEL_U32(); + /** */ public static final long H5T_INTEL_U64 = H5T_INTEL_U64(); + /** */ public static final long H5T_INTEL_U8 = H5T_INTEL_U8(); + /** */ public static final long H5T_MIPS_B16 = H5T_MIPS_B16(); + /** */ public static final long H5T_MIPS_B32 = H5T_MIPS_B32(); + /** */ public static final long H5T_MIPS_B64 = H5T_MIPS_B64(); + /** */ public static final long H5T_MIPS_B8 = H5T_MIPS_B8(); + /** */ public static final long H5T_MIPS_F32 = H5T_MIPS_F32(); + /** */ public static final long H5T_MIPS_F64 = H5T_MIPS_F64(); + /** */ public static final long H5T_MIPS_I16 = H5T_MIPS_I16(); + /** */ public static final long H5T_MIPS_I32 = H5T_MIPS_I32(); + /** */ public static final long H5T_MIPS_I64 = H5T_MIPS_I64(); + /** */ public static final long H5T_MIPS_I8 = H5T_MIPS_I8(); + /** */ public static final long H5T_MIPS_U16 = H5T_MIPS_U16(); + /** */ public static final long H5T_MIPS_U32 = H5T_MIPS_U32(); + /** */ public static final long H5T_MIPS_U64 = H5T_MIPS_U64(); + /** */ public static final long H5T_MIPS_U8 = H5T_MIPS_U8(); + /** */ public static final long H5T_NATIVE_B16 = H5T_NATIVE_B16(); + /** */ public static final long H5T_NATIVE_B32 = H5T_NATIVE_B32(); + /** */ public static final long H5T_NATIVE_B64 = H5T_NATIVE_B64(); + /** */ public static final long H5T_NATIVE_B8 = H5T_NATIVE_B8(); + /** */ public static final long H5T_NATIVE_CHAR = H5T_NATIVE_CHAR(); + /** */ public static final long H5T_NATIVE_DOUBLE = H5T_NATIVE_DOUBLE(); + /** */ public static final long H5T_NATIVE_FLOAT = H5T_NATIVE_FLOAT(); + /** */ public static final long H5T_NATIVE_HADDR = H5T_NATIVE_HADDR(); + /** */ public static final long H5T_NATIVE_HBOOL = H5T_NATIVE_HBOOL(); + /** */ public static final long H5T_NATIVE_HERR = H5T_NATIVE_HERR(); + /** */ public static final long H5T_NATIVE_HSIZE = H5T_NATIVE_HSIZE(); + /** */ public static final long H5T_NATIVE_HSSIZE = H5T_NATIVE_HSSIZE(); + /** */ public static final long H5T_NATIVE_INT = H5T_NATIVE_INT(); + /** */ public static final long H5T_NATIVE_INT_FAST16 = H5T_NATIVE_INT_FAST16(); + /** */ public static final long H5T_NATIVE_INT_FAST32 = H5T_NATIVE_INT_FAST32(); + /** */ public static final long H5T_NATIVE_INT_FAST64 = H5T_NATIVE_INT_FAST64(); + /** */ public static final long H5T_NATIVE_INT_FAST8 = H5T_NATIVE_INT_FAST8(); + /** */ public static final long H5T_NATIVE_INT_LEAST16 = H5T_NATIVE_INT_LEAST16(); + /** */ public static final long H5T_NATIVE_INT_LEAST32 = H5T_NATIVE_INT_LEAST32(); + /** */ public static final long H5T_NATIVE_INT_LEAST64 = H5T_NATIVE_INT_LEAST64(); + /** */ public static final long H5T_NATIVE_INT_LEAST8 = H5T_NATIVE_INT_LEAST8(); + /** */ public static final long H5T_NATIVE_INT16 = H5T_NATIVE_INT16(); + /** */ public static final long H5T_NATIVE_INT32 = H5T_NATIVE_INT32(); + /** */ public static final long H5T_NATIVE_INT64 = H5T_NATIVE_INT64(); + /** */ public static final long H5T_NATIVE_INT8 = H5T_NATIVE_INT8(); + /** */ public static final long H5T_NATIVE_LDOUBLE = H5T_NATIVE_LDOUBLE(); + /** */ public static final long H5T_NATIVE_LLONG = H5T_NATIVE_LLONG(); + /** */ public static final long H5T_NATIVE_LONG = H5T_NATIVE_LONG(); + /** */ public static final long H5T_NATIVE_OPAQUE = H5T_NATIVE_OPAQUE(); + /** */ public static final long H5T_NATIVE_SCHAR = H5T_NATIVE_SCHAR(); + /** */ public static final long H5T_NATIVE_SHORT = H5T_NATIVE_SHORT(); + /** */ public static final long H5T_NATIVE_UCHAR = H5T_NATIVE_UCHAR(); + /** */ public static final long H5T_NATIVE_UINT = H5T_NATIVE_UINT(); + /** */ public static final long H5T_NATIVE_UINT_FAST16 = H5T_NATIVE_UINT_FAST16(); + /** */ public static final long H5T_NATIVE_UINT_FAST32 = H5T_NATIVE_UINT_FAST32(); + /** */ public static final long H5T_NATIVE_UINT_FAST64 = H5T_NATIVE_UINT_FAST64(); + /** */ public static final long H5T_NATIVE_UINT_FAST8 = H5T_NATIVE_UINT_FAST8(); + /** */ public static final long H5T_NATIVE_UINT_LEAST16 = H5T_NATIVE_UINT_LEAST16(); + /** */ public static final long H5T_NATIVE_UINT_LEAST32 = H5T_NATIVE_UINT_LEAST32(); + /** */ public static final long H5T_NATIVE_UINT_LEAST64 = H5T_NATIVE_UINT_LEAST64(); + /** */ public static final long H5T_NATIVE_UINT_LEAST8 = H5T_NATIVE_UINT_LEAST8(); + /** */ public static final long H5T_NATIVE_UINT16 = H5T_NATIVE_UINT16(); + /** */ public static final long H5T_NATIVE_UINT32 = H5T_NATIVE_UINT32(); + /** */ public static final long H5T_NATIVE_UINT64 = H5T_NATIVE_UINT64(); + /** */ public static final long H5T_NATIVE_UINT8 = H5T_NATIVE_UINT8(); + /** */ public static final long H5T_NATIVE_ULLONG = H5T_NATIVE_ULLONG(); + /** */ public static final long H5T_NATIVE_ULONG = H5T_NATIVE_ULONG(); + /** */ public static final long H5T_NATIVE_USHORT = H5T_NATIVE_USHORT(); + /** */ public static final int H5T_NCLASSES = H5T_NCLASSES(); + /** */ public static final int H5T_NO_CLASS = H5T_NO_CLASS(); + /** */ public static final int H5T_NORM_ERROR = H5T_NORM_ERROR(); + /** */ public static final int H5T_NORM_IMPLIED = H5T_NORM_IMPLIED(); + /** */ public static final int H5T_NORM_MSBSET = H5T_NORM_MSBSET(); + /** */ public static final int H5T_NORM_NONE = H5T_NORM_NONE(); + /** */ public static final int H5T_NPAD = H5T_NPAD(); + /** */ public static final int H5T_NSGN = H5T_NSGN(); + /** */ public static final int H5T_OPAQUE = H5T_OPAQUE(); + /** */ public static final int H5T_OPAQUE_TAG_MAX = H5T_OPAQUE_TAG_MAX(); /* 1.6.5 */ + /** */ public static final int H5T_ORDER_BE = H5T_ORDER_BE(); + /** */ public static final int H5T_ORDER_ERROR = H5T_ORDER_ERROR(); + /** */ public static final int H5T_ORDER_LE = H5T_ORDER_LE(); + /** */ public static final int H5T_ORDER_NONE = H5T_ORDER_NONE(); + /** */ public static final int H5T_ORDER_VAX = H5T_ORDER_VAX(); + /** */ public static final int H5T_PAD_BACKGROUND = H5T_PAD_BACKGROUND(); + /** */ public static final int H5T_PAD_ERROR = H5T_PAD_ERROR(); + /** */ public static final int H5T_PAD_ONE = H5T_PAD_ONE(); + /** */ public static final int H5T_PAD_ZERO = H5T_PAD_ZERO(); + /** */ public static final int H5T_PERS_DONTCARE = H5T_PERS_DONTCARE(); + /** */ public static final int H5T_PERS_HARD = H5T_PERS_HARD(); + /** */ public static final int H5T_PERS_SOFT = H5T_PERS_SOFT(); + /** */ public static final int H5T_REFERENCE = H5T_REFERENCE(); + /** */ public static final int H5T_SGN_2 = H5T_SGN_2(); + /** */ public static final int H5T_SGN_ERROR = H5T_SGN_ERROR(); + /** */ public static final int H5T_SGN_NONE = H5T_SGN_NONE(); + /** */ public static final long H5T_STD_B16BE = H5T_STD_B16BE(); + /** */ public static final long H5T_STD_B16LE = H5T_STD_B16LE(); + /** */ public static final long H5T_STD_B32BE = H5T_STD_B32BE(); + /** */ public static final long H5T_STD_B32LE = H5T_STD_B32LE(); + /** */ public static final long H5T_STD_B64BE = H5T_STD_B64BE(); + /** */ public static final long H5T_STD_B64LE = H5T_STD_B64LE(); + /** */ public static final long H5T_STD_B8BE = H5T_STD_B8BE(); + /** */ public static final long H5T_STD_B8LE = H5T_STD_B8LE(); + /** */ public static final long H5T_STD_I16BE = H5T_STD_I16BE(); + /** */ public static final long H5T_STD_I16LE = H5T_STD_I16LE(); + /** */ public static final long H5T_STD_I32BE = H5T_STD_I32BE(); + /** */ public static final long H5T_STD_I32LE = H5T_STD_I32LE(); + /** */ public static final long H5T_STD_I64BE = H5T_STD_I64BE(); + /** */ public static final long H5T_STD_I64LE = H5T_STD_I64LE(); + /** */ public static final long H5T_STD_I8BE = H5T_STD_I8BE(); + /** */ public static final long H5T_STD_I8LE = H5T_STD_I8LE(); + /** */ public static final long H5T_STD_REF_DSETREG = H5T_STD_REF_DSETREG(); + /** */ public static final long H5T_STD_REF_OBJ = H5T_STD_REF_OBJ(); + /** */ + public static final long H5T_STD_REF = H5T_STD_REF(); + /** */ public static final long H5T_STD_U16BE = H5T_STD_U16BE(); + /** */ public static final long H5T_STD_U16LE = H5T_STD_U16LE(); + /** */ public static final long H5T_STD_U32BE = H5T_STD_U32BE(); + /** */ public static final long H5T_STD_U32LE = H5T_STD_U32LE(); + /** */ public static final long H5T_STD_U64BE = H5T_STD_U64BE(); + /** */ public static final long H5T_STD_U64LE = H5T_STD_U64LE(); + /** */ public static final long H5T_STD_U8BE = H5T_STD_U8BE(); + /** */ public static final long H5T_STD_U8LE = H5T_STD_U8LE(); + /** */ public static final int H5T_STR_ERROR = H5T_STR_ERROR(); + /** */ public static final int H5T_STR_NULLPAD = H5T_STR_NULLPAD(); + /** */ public static final int H5T_STR_NULLTERM = H5T_STR_NULLTERM(); + /** */ public static final int H5T_STR_RESERVED_10 = H5T_STR_RESERVED_10(); + /** */ public static final int H5T_STR_RESERVED_11 = H5T_STR_RESERVED_11(); + /** */ public static final int H5T_STR_RESERVED_12 = H5T_STR_RESERVED_12(); + /** */ public static final int H5T_STR_RESERVED_13 = H5T_STR_RESERVED_13(); + /** */ public static final int H5T_STR_RESERVED_14 = H5T_STR_RESERVED_14(); + /** */ public static final int H5T_STR_RESERVED_15 = H5T_STR_RESERVED_15(); + /** */ public static final int H5T_STR_RESERVED_3 = H5T_STR_RESERVED_3(); + /** */ public static final int H5T_STR_RESERVED_4 = H5T_STR_RESERVED_4(); + /** */ public static final int H5T_STR_RESERVED_5 = H5T_STR_RESERVED_5(); + /** */ public static final int H5T_STR_RESERVED_6 = H5T_STR_RESERVED_6(); + /** */ public static final int H5T_STR_RESERVED_7 = H5T_STR_RESERVED_7(); + /** */ public static final int H5T_STR_RESERVED_8 = H5T_STR_RESERVED_8(); + /** */ public static final int H5T_STR_RESERVED_9 = H5T_STR_RESERVED_9(); + /** */ public static final int H5T_STR_SPACEPAD = H5T_STR_SPACEPAD(); + /** */ public static final int H5T_STRING = H5T_STRING(); + /** */ public static final int H5T_TIME = H5T_TIME(); + /** */ public static final long H5T_UNIX_D32BE = H5T_UNIX_D32BE(); + /** */ public static final long H5T_UNIX_D32LE = H5T_UNIX_D32LE(); + /** */ public static final long H5T_UNIX_D64BE = H5T_UNIX_D64BE(); + /** */ public static final long H5T_UNIX_D64LE = H5T_UNIX_D64LE(); + /** */ public static final long H5T_VARIABLE = H5T_VARIABLE(); + /** */ public static final int H5T_VLEN = H5T_VLEN(); + /** */ public static final int H5T_VL_T = H5T_VL_T(); + /** */ public static final int H5VL_CAP_FLAG_NONE = H5VL_CAP_FLAG_NONE(); + /** */ public static final int H5VL_CAP_FLAG_THREADSAFE = H5VL_CAP_FLAG_THREADSAFE(); + /** */ public static final long H5VL_NATIVE = H5VL_NATIVE(); + /** */ public static final String H5VL_NATIVE_NAME = H5VL_NATIVE_NAME(); + /** */ public static final int H5VL_NATIVE_VALUE = H5VL_NATIVE_VALUE(); + /** */ public static final int H5VL_NATIVE_VERSION = H5VL_NATIVE_VERSION(); + /** */ public static final int H5_VOL_INVALID = H5_VOL_INVALID(); + /** */ public static final int H5_VOL_NATIVE = H5_VOL_NATIVE(); + /** */ public static final int H5_VOL_RESERVED = H5_VOL_RESERVED(); + /** */ public static final int H5_VOL_MAX = H5_VOL_MAX(); + /** Return values for filter callback function */ public static final int H5Z_CB_CONT = H5Z_CB_CONT(); + /** Return values for filter callback function */ public static final int H5Z_CB_ERROR = H5Z_CB_ERROR(); + /** Return values for filter callback function */ public static final int H5Z_CB_FAIL = H5Z_CB_FAIL(); + /** Return values for filter callback function */ public static final int H5Z_CB_NO = H5Z_CB_NO(); + /** Values to decide if EDC is enabled for reading data */ public static final int H5Z_DISABLE_EDC = H5Z_DISABLE_EDC(); + /** Values to decide if EDC is enabled for reading data */ public static final int H5Z_ENABLE_EDC = H5Z_ENABLE_EDC(); + /** Values to decide if EDC is enabled for reading data */ public static final int H5Z_ERROR_EDC = H5Z_ERROR_EDC(); + /** Filter IDs - deflation like gzip */ public static final int H5Z_FILTER_DEFLATE = H5Z_FILTER_DEFLATE(); + /** Filter IDs - no filter */ public static final int H5Z_FILTER_ERROR = H5Z_FILTER_ERROR(); + /** Filter IDs - fletcher32 checksum of EDC */ public static final int H5Z_FILTER_FLETCHER32 = H5Z_FILTER_FLETCHER32(); + /** Filter IDs - maximum filter id */ public static final int H5Z_FILTER_MAX = H5Z_FILTER_MAX(); + /** Filter IDs - nbit compression */ public static final int H5Z_FILTER_NBIT = H5Z_FILTER_NBIT(); + /** Filter IDs - reserved indefinitely */ public static final int H5Z_FILTER_NONE = H5Z_FILTER_NONE(); + /** Filter IDs - filter ids below this value are reserved for library use */ public static final int H5Z_FILTER_RESERVED = H5Z_FILTER_RESERVED(); + /** Filter IDs - scale+offset compression */ public static final int H5Z_FILTER_SCALEOFFSET = H5Z_FILTER_SCALEOFFSET(); + /** Filter IDs - shuffle the data */ public static final int H5Z_FILTER_SHUFFLE = H5Z_FILTER_SHUFFLE(); + /** Filter IDs - szip compression */ public static final int H5Z_FILTER_SZIP = H5Z_FILTER_SZIP(); + /** Flags for filter definition (stored) + * definition flag mask */ public static final int H5Z_FLAG_DEFMASK = H5Z_FLAG_DEFMASK(); + /** Additional flags for filter invocation (not stored) + * invocation flag mask */ public static final int H5Z_FLAG_INVMASK = H5Z_FLAG_INVMASK(); + /** Flags for filter definition (stored) + * filter is mandatory */ public static final int H5Z_FLAG_MANDATORY = H5Z_FLAG_MANDATORY(); + /** Flags for filter definition (stored) + * filter is optional */ public static final int H5Z_FLAG_OPTIONAL = H5Z_FLAG_OPTIONAL(); + /** Additional flags for filter invocation (not stored) + * reverse direction; read */ public static final int H5Z_FLAG_REVERSE = H5Z_FLAG_REVERSE(); + /** Additional flags for filter invocation (not stored) + * skip EDC filters for read */ public static final int H5Z_FLAG_SKIP_EDC = H5Z_FLAG_SKIP_EDC(); + /** Symbol to remove all filters in H5Premove_filter */ + public static final int H5Z_FILTER_ALL = H5Z_FILTER_ALL(); + /** Maximum number of filters allowed in a pipeline */ public static final int H5Z_MAX_NFILTERS = H5Z_MAX_NFILTERS(); + /** Values to decide if EDC is enabled for reading data */ public static final int H5Z_NO_EDC = H5Z_NO_EDC(); + /** Bit flags for H5Zget_filter_info */ public static final int H5Z_FILTER_CONFIG_ENCODE_ENABLED = H5Z_FILTER_CONFIG_ENCODE_ENABLED(); + /** Bit flags for H5Zget_filter_info */ public static final int H5Z_FILTER_CONFIG_DECODE_ENABLED = H5Z_FILTER_CONFIG_DECODE_ENABLED(); + /** Special parameters for ScaleOffset filter*/ public static final int H5Z_SO_INT_MINBITS_DEFAULT = H5Z_SO_INT_MINBITS_DEFAULT(); + /** Special parameters for ScaleOffset filter*/ public static final int H5Z_SO_FLOAT_DSCALE = H5Z_SO_FLOAT_DSCALE(); + /** Special parameters for ScaleOffset filter*/ public static final int H5Z_SO_FLOAT_ESCALE = H5Z_SO_FLOAT_ESCALE(); + /** Special parameters for ScaleOffset filter*/ public static final int H5Z_SO_INT = H5Z_SO_INT(); + /** shuffle filter - Number of parameters that users can set */ public static final int H5Z_SHUFFLE_USER_NPARMS = H5Z_SHUFFLE_USER_NPARMS(); + /** shuffle filter - Total number of parameters for filter */ public static final int H5Z_SHUFFLE_TOTAL_NPARMS = H5Z_SHUFFLE_TOTAL_NPARMS(); + /** szip filter - Number of parameters that users can set */ public static final int H5Z_SZIP_USER_NPARMS = H5Z_SZIP_USER_NPARMS(); + /** szip filter - Total number of parameters for filter */ public static final int H5Z_SZIP_TOTAL_NPARMS = H5Z_SZIP_TOTAL_NPARMS(); + /** szip filter - "User" parameter for option mask */ public static final int H5Z_SZIP_PARM_MASK = H5Z_SZIP_PARM_MASK(); + /** szip filter - "User" parameter for pixels-per-block */ public static final int H5Z_SZIP_PARM_PPB = H5Z_SZIP_PARM_PPB(); + /** szip filter - "Local" parameter for bits-per-pixel */ public static final int H5Z_SZIP_PARM_BPP = H5Z_SZIP_PARM_BPP(); + /** szip filter - "Local" parameter for pixels-per-scanline */ public static final int H5Z_SZIP_PARM_PPS = H5Z_SZIP_PARM_PPS(); + /** nbit filter - Number of parameters that users can set */ public static final int H5Z_NBIT_USER_NPARMS = H5Z_NBIT_USER_NPARMS(); + /** scale offset filter - Number of parameters that users can set */ public static final int H5Z_SCALEOFFSET_USER_NPARMS = H5Z_SCALEOFFSET_USER_NPARMS(); - public static final int H5Z_FILTER_ALL = H5Z_FILTER_ALL(); // ///////////////////////////////////////////////////////////////////////// // List of private native variables to get constant values from C // @@ -817,16 +1618,18 @@ public class HDF5Constants { private static native final long H5E_ARGS(); - private static native final long H5E_ATOM(); + private static native final long H5E_ID(); private static native final long H5E_ATTR(); - private static native final long H5E_BADATOM(); + private static native final long H5E_BADID(); private static native final long H5E_BADFILE(); private static native final long H5E_BADGROUP(); + private static native final long H5E_BADITER(); + private static native final long H5E_BADMESG(); private static native final long H5E_BADRANGE(); @@ -847,15 +1650,30 @@ public class HDF5Constants { private static native final long H5E_CANAPPLY(); - // private static native final long H5E_CANTALLOC(); + private static native final long H5E_CANTALLOC(); + + private static native final long H5E_CANTAPPEND(); + + private static native final long H5E_CANTATTACH(); + + private static native final long H5E_CANTCLEAN(); + private static native final long H5E_CANTCLIP(); private static native final long H5E_CANTCLOSEFILE(); + private static native final long H5E_CANTCLOSEOBJ(); + + private static native final long H5E_CANTCOMPARE(); + + private static native final long H5E_CANTCOMPUTE(); + private static native final long H5E_CANTCONVERT(); private static native final long H5E_CANTCOPY(); + private static native final long H5E_CANTCORK(); + private static native final long H5E_CANTCOUNT(); private static native final long H5E_CANTCREATE(); @@ -868,18 +1686,36 @@ public class HDF5Constants { private static native final long H5E_CANTDELETEFILE(); + private static native final long H5E_CANTDEPEND(); + + private static native final long H5E_CANTDIRTY(); + private static native final long H5E_CANTENCODE(); + private static native final long H5E_CANTEXPUNGE(); + + private static native final long H5E_CANTEXTEND(); + + private static native final long H5E_CANTFILTER(); + private static native final long H5E_CANTFLUSH(); private static native final long H5E_CANTFREE(); + private static native final long H5E_CANTGATHER(); + + private static native final long H5E_CANTGC(); + private static native final long H5E_CANTGET(); + private static native final long H5E_CANTGETSIZE(); + private static native final long H5E_CANTINC(); private static native final long H5E_CANTINIT(); + private static native final long H5E_CANTINS(); + private static native final long H5E_CANTINSERT(); private static native final long H5E_CANTLIST(); @@ -888,29 +1724,96 @@ public class HDF5Constants { private static native final long H5E_CANTLOCK(); + private static native final long H5E_CANTLOCKFILE(); + + private static native final long H5E_CANTMARKCLEAN(); + + private static native final long H5E_CANTMARKDIRTY(); + + private static native final long H5E_CANTMARKSERIALIZED(); + + private static native final long H5E_CANTMARKUNSERIALIZED(); + + private static native final long H5E_CANTMERGE(); + + private static native final long H5E_CANTMOVE(); + + private static native final long H5E_CANTMODIFY(); + private static native final long H5E_CANTNEXT(); + private static native final long H5E_CANTNOTIFY(); + private static native final long H5E_CANTOPENFILE(); private static native final long H5E_CANTOPENOBJ(); - // private static native final long H5E_CANTRECV(); + private static native final long H5E_CANTOPERATE(); + + private static native final long H5E_CANTPACK(); + + private static native final long H5E_CANTPIN(); + + private static native final long H5E_CANTPROTECT(); + + private static native final long H5E_CANTRECV(); + + private static native final long H5E_CANTREDISTRIBUTE(); + private static native final long H5E_CANTREGISTER(); private static native final long H5E_CANTRELEASE(); + private static native final long H5E_CANTREMOVE(); + + private static native final long H5E_CANTRENAME(); + + private static native final long H5E_CANTRESET(); + + private static native final long H5E_CANTRESIZE(); + + private static native final long H5E_CANTRESTORE(); + + private static native final long H5E_CANTREVIVE(); + + private static native final long H5E_CANTSHRINK(); + private static native final long H5E_CANTSELECT(); private static native final long H5E_CANTSET(); + private static native final long H5E_CANTSERIALIZE(); + + private static native final long H5E_CANTSORT(); + private static native final long H5E_CANTSPLIT(); + private static native final long H5E_CANTSWAP(); + + private static native final long H5E_CANTTAG(); + + private static native final long H5E_CANTUNCORK(); + + private static native final long H5E_CANTUNDEPEND(); + private static native final long H5E_CANTUNLOCK(); + private static native final long H5E_CANTUNLOCKFILE(); + + private static native final long H5E_CANTUNPIN(); + + private static native final long H5E_CANTUNPROTECT(); + + private static native final long H5E_CANTUNSERIALIZE(); + + private static native final long H5E_CANTUPDATE(); + private static native final long H5E_CLOSEERROR(); private static native final long H5E_COMPLEN(); + private static native final long H5E_CONTEXT(); + private static native final long H5E_DATASET(); private static native final long H5E_DATASPACE(); @@ -921,10 +1824,16 @@ public class HDF5Constants { private static native final long H5E_DUPCLASS(); + private static native final long H5E_EARRAY(); + private static native final long H5E_EFL(); + private static native final long H5E_ERROR(); + private static native final long H5E_EXISTS(); + private static native final long H5E_FARRAY(); + private static native final long H5E_FCNTL(); private static native final long H5E_FILE(); @@ -933,10 +1842,14 @@ public class HDF5Constants { private static native final long H5E_FILEOPEN(); + private static native final long H5E_FSPACE(); + private static native final long H5E_FUNC(); private static native final long H5E_HEAP(); + private static native final long H5E_INCONSISTENTSTATE(); + private static native final long H5E_INTERNAL(); private static native final long H5E_IO(); @@ -945,8 +1858,12 @@ public class HDF5Constants { private static native final long H5E_LINKCOUNT(); + private static native final long H5E_LOGGING(); + private static native final int H5E_MAJOR(); + private static native final long H5E_MAP(); + private static native final int H5E_MINOR(); private static native final long H5E_MOUNT(); @@ -955,6 +1872,12 @@ public class HDF5Constants { private static native final long H5E_MPIERRSTR(); + private static native final long H5E_NLINKS(); + + private static native final long H5E_NO_INDEPENDENT(); + + private static native final long H5E_NOENCODER(); + private static native final long H5E_NOFILTER(); private static native final long H5E_NOIDS(); @@ -971,14 +1894,26 @@ public class HDF5Constants { private static native final long H5E_NOTHDF5(); + private static native final long H5E_NOTREGISTERED(); + + private static native final long H5E_OBJOPEN(); + private static native final long H5E_OHDR(); + private static native final long H5E_OPENERROR(); + private static native final long H5E_OVERFLOW(); + private static native final long H5E_PAGEBUF(); + + private static native final long H5E_PATH(); + private static native final long H5E_PLINE(); private static native final long H5E_PLIST(); + private static native final long H5E_PLUGIN(); + private static native final long H5E_PROTECT(); private static native final long H5E_READERROR(); @@ -991,12 +1926,24 @@ public class HDF5Constants { private static native final long H5E_SEEKERROR(); + private static native final long H5E_SETDISALLOWED(); + private static native final long H5E_SETLOCAL(); + private static native final long H5E_SLIST(); + + private static native final long H5E_SOHM(); + private static native final long H5E_STORAGE(); private static native final long H5E_SYM(); + private static native final long H5E_SYSERRSTR(); + + private static native final long H5E_SYSTEM(); + + private static native final long H5E_TRAVERSE(); + private static native final long H5E_TRUNCATED(); private static native final long H5E_TST(); @@ -1023,8 +1970,6 @@ public class HDF5Constants { private static native final int H5ES_STATUS_FAIL(); - private static native final int H5ES_STATUS_CANCELED(); - private static native final int H5F_ACC_CREAT(); private static native final int H5F_ACC_EXCL(); @@ -1059,6 +2004,8 @@ public class HDF5Constants { private static native final int H5F_LIBVER_V112(); + private static native final int H5F_LIBVER_V114(); + private static native final int H5F_LIBVER_NBOUNDS(); private static native final int H5F_LIBVER_LATEST(); @@ -1297,11 +2244,13 @@ public class HDF5Constants { private static native final int H5O_INFO_NUM_ATTRS(); - private static native final int H5O_INFO_HDR(); + private static native final int H5O_INFO_ALL(); - private static native final int H5O_INFO_META_SIZE(); + private static native final int H5O_NATIVE_INFO_HDR(); - private static native final int H5O_INFO_ALL(); + private static native final int H5O_NATIVE_INFO_META_SIZE(); + + private static native final int H5O_NATIVE_INFO_ALL(); private static native final int H5O_SHMESG_NONE_FLAG(); @@ -1327,6 +2276,10 @@ public class HDF5Constants { private static native final int H5O_TYPE_NTYPES(); + private static native final int H5O_MAX_TOKEN_SIZE(); + + private static native final H5O_token_t H5O_TOKEN_UNDEF(); + private static native final long H5P_ROOT(); private static native final long H5P_OBJECT_CREATE(); @@ -1417,16 +2370,28 @@ public class HDF5Constants { private static native final int H5PL_VOL_PLUGIN(); + private static native final int H5R_ATTR(); + private static native final int H5R_BADTYPE(); private static native final int H5R_DATASET_REGION(); + private static native final int H5R_DATASET_REGION1(); + + private static native final int H5R_DATASET_REGION2(); + private static native final int H5R_MAXTYPE(); + private static native final int H5R_REF_BUF_SIZE(); + private static native final int H5R_OBJ_REF_BUF_SIZE(); private static native final int H5R_OBJECT(); + private static native final int H5R_OBJECT1(); + + private static native final int H5R_OBJECT2(); + private static native final int H5S_ALL(); private static native final int H5S_MAX_RANK(); @@ -1815,6 +2780,8 @@ public class HDF5Constants { private static native final long H5T_STD_REF_OBJ(); + private static native final long H5T_STD_REF(); + private static native final long H5T_STD_U16BE(); private static native final long H5T_STD_U16LE(); diff --git a/java/src/hdf/hdf5lib/HDF5GroupInfo.java b/java/src/hdf/hdf5lib/HDF5GroupInfo.java index a45cb7c..4c31af7 100644 --- a/java/src/hdf/hdf5lib/HDF5GroupInfo.java +++ b/java/src/hdf/hdf5lib/HDF5GroupInfo.java @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -41,6 +41,8 @@ public class HDF5GroupInfo { long mtime; int linklen; + /** Container for the information reported about an HDF5 Object + * from the H5Gget_obj_info() method */ public HDF5GroupInfo() { fileno = new long[2]; objno = new long[2]; @@ -88,27 +90,44 @@ public class HDF5GroupInfo { linklen = 0; } - /* accessors */ + /** fileno accessors + * @return the file number if successful + */ public long[] getFileno() { return fileno; } + /** accessors + * @return the object number if successful + */ public long[] getObjno() { return objno; } + /** accessors + * @return type of group if successful + */ public int getType() { return type; } + /** accessors + * @return the number of links in the group if successful + */ public int getNlink() { return nlink; } + /** accessors + * @return the modified time value if successful + */ public long getMtime() { return mtime; } + /** accessors + * @return a length of link name if successful + */ public int getLinklen() { return linklen; } diff --git a/java/src/hdf/hdf5lib/HDFArray.java b/java/src/hdf/hdf5lib/HDFArray.java index 30f0fc8..21e2b02 100644 --- a/java/src/hdf/hdf5lib/HDFArray.java +++ b/java/src/hdf/hdf5lib/HDFArray.java @@ -6,33 +6,30 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ - package hdf.hdf5lib; import hdf.hdf5lib.exceptions.HDF5Exception; import hdf.hdf5lib.exceptions.HDF5JavaException; +import java.util.Arrays; /** * This is a class for handling multidimensional arrays for HDF. * <p> - * The purpose is to allow the storage and retrieval of arbitrary array types - * containing scientific data. + * The purpose is to allow the storage and retrieval of arbitrary array types containing scientific data. * <p> - * The methods support the conversion of an array to and from Java to a - * one-dimensional array of bytes suitable for I/O by the C library. + * The methods support the conversion of an array to and from Java to a one-dimensional array of bytes suitable for I/O + * by the C library. * <p> - * This class heavily uses the <a - * href="./hdf.hdf5lib.HDFNativeData.html">HDFNativeData</a> class to - * convert between Java and C representations. + * This class heavily uses the <a href="./hdf.hdf5lib.HDFNativeData.html">HDFNativeData</a> class to convert between + * Java and C representations. */ public class HDFArray { - private Object _theArray = null; private ArrayDescriptor _desc = null; private byte[] _barray = null; @@ -40,31 +37,27 @@ public class HDFArray { // public HDFArray() {} /** - * The input must be a Java Array (possibly multidimensional) of primitive - * numbers or sub-classes of Number. + * The input must be a Java Array (possibly multidimensional) of primitive numbers or sub-classes of Number. * <p> - * The input is analysed to determine the number of dimensions and size of - * each dimension, as well as the type of the elements. + * The input is analysed to determine the number of dimensions and size of each dimension, as well as the type of + * the elements. * <p> * The description is saved in private variables, and used to convert data. * * @param anArray - * The array object. - * - * @exception hdf.hdf5lib.exceptions.HDF5Exception + * The array object. + * @exception hdf.hdf5lib.exceptions.HDF5JavaException * object is not an array. */ - public HDFArray(Object anArray) throws HDF5Exception { - + public HDFArray(Object anArray) throws HDF5JavaException + { if (anArray == null) { - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: array is null?: "); + HDF5JavaException ex = new HDF5JavaException("HDFArray: array is null?: "); } Class tc = anArray.getClass(); if (tc.isArray() == false) { /* exception: not an array */ - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: not an array?: "); + HDF5JavaException ex = new HDF5JavaException("HDFArray: not an array?: "); throw (ex); } _theArray = anArray; @@ -72,8 +65,7 @@ public class HDFArray { /* extra error checking -- probably not needed */ if (_desc == null) { - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: internal error: array description failed?: "); + HDF5JavaException ex = new HDF5JavaException("HDFArray: internal error: array description failed?: "); throw (ex); } } @@ -81,14 +73,14 @@ public class HDFArray { /** * Allocate a one-dimensional array of bytes sufficient to store the array. * - * @return A one-D array of bytes, filled with zeroes. The bytes are - * sufficient to hold the data of the Array passed to the - * constructor. + * @return A one-D array of bytes, filled with zeroes. The bytes are sufficient to hold the data of the Array passed + * to the constructor. * @exception hdf.hdf5lib.exceptions.HDF5JavaException * Allocation failed. */ - public byte[] emptyBytes() throws HDF5JavaException { + public byte[] emptyBytes() throws HDF5JavaException + { byte[] b = null; if ((ArrayDescriptor.dims == 1) && (ArrayDescriptor.NT == 'B')) { @@ -98,32 +90,28 @@ public class HDFArray { b = new byte[ArrayDescriptor.totalSize]; } if (b == null) { - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: emptyBytes: allocation failed"); + HDF5JavaException ex = new HDF5JavaException("HDFArray: emptyBytes: allocation failed"); throw (ex); } return (b); } /** - * Given a Java array of numbers, convert it to a one-dimensional array of - * bytes in correct native order. + * Given a Java array of numbers, convert it to a one-dimensional array of bytes in correct native order. * - * @return A one-D array of bytes, constructed from the Array passed to the - * constructor. + * @return A one-D array of bytes, constructed from the Array passed to the constructor. * @exception hdf.hdf5lib.exceptions.HDF5JavaException * the object not an array or other internal error. */ - public byte[] byteify() throws HDF5JavaException { - + public byte[] byteify() throws HDF5JavaException + { if (_barray != null) { return _barray; } if (_theArray == null) { /* exception: not an array */ - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: byteify not an array?: "); + HDF5JavaException ex = new HDF5JavaException("HDFArray: byteify not an array?: "); throw (ex); } @@ -140,73 +128,53 @@ public class HDFArray { byte[] therow; if (ArrayDescriptor.NT == 'I') { - therow = HDFNativeData.intToByte(0, - ArrayDescriptor.dimlen[1], (int[]) _theArray); + therow = HDFNativeData.intToByte(0, ArrayDescriptor.dimlen[1], (int[]) _theArray); } else if (ArrayDescriptor.NT == 'S') { - therow = HDFNativeData.shortToByte(0, - ArrayDescriptor.dimlen[1], (short[]) _theArray); + therow = HDFNativeData.shortToByte(0, ArrayDescriptor.dimlen[1], (short[]) _theArray); } else if (ArrayDescriptor.NT == 'F') { - therow = HDFNativeData.floatToByte(0, - ArrayDescriptor.dimlen[1], (float[]) _theArray); + therow = HDFNativeData.floatToByte(0, ArrayDescriptor.dimlen[1], (float[]) _theArray); } else if (ArrayDescriptor.NT == 'J') { - therow = HDFNativeData.longToByte(0, - ArrayDescriptor.dimlen[1], (long[]) _theArray); + therow = HDFNativeData.longToByte(0, ArrayDescriptor.dimlen[1], (long[]) _theArray); } else if (ArrayDescriptor.NT == 'D') { - therow = HDFNativeData - .doubleToByte(0, ArrayDescriptor.dimlen[1], - (double[]) _theArray); + therow = HDFNativeData.doubleToByte(0, ArrayDescriptor.dimlen[1], (double[]) _theArray); } else if (ArrayDescriptor.NT == 'L') { if (ArrayDescriptor.className.equals("java.lang.Byte")) { therow = ByteObjToByte((Byte[]) _theArray); } - else if (ArrayDescriptor.className - .equals("java.lang.Integer")) { + else if (ArrayDescriptor.className.equals("java.lang.Integer")) { therow = IntegerToByte((Integer[]) _theArray); } - else if (ArrayDescriptor.className - .equals("java.lang.Short")) { + else if (ArrayDescriptor.className.equals("java.lang.Short")) { therow = ShortToByte((Short[]) _theArray); } - else if (ArrayDescriptor.className - .equals("java.lang.Float")) { + else if (ArrayDescriptor.className.equals("java.lang.Float")) { therow = FloatObjToByte((Float[]) _theArray); } - else if (ArrayDescriptor.className - .equals("java.lang.Double")) { + else if (ArrayDescriptor.className.equals("java.lang.Double")) { therow = DoubleObjToByte((Double[]) _theArray); } - else if (ArrayDescriptor.className - .equals("java.lang.Long")) { + else if (ArrayDescriptor.className.equals("java.lang.Long")) { therow = LongObjToByte((Long[]) _theArray); } else { - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: unknown type of Object?"); + HDF5JavaException ex = new HDF5JavaException("HDFArray: unknown type of Object?"); throw (ex); } } else { - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: unknown type of data?"); + HDF5JavaException ex = new HDF5JavaException("HDFArray: unknown type of data?"); throw (ex); } - System - .arraycopy( - therow, - 0, - _barray, - 0, - (ArrayDescriptor.dimlen[1] * ArrayDescriptor.NTsize)); + System.arraycopy(therow, 0, _barray, 0, (ArrayDescriptor.dimlen[1] * ArrayDescriptor.NTsize)); return _barray; } catch (OutOfMemoryError err) { - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: byteify array too big?"); + HDF5JavaException ex = new HDF5JavaException("HDFArray: byteify array too big?"); throw (ex); } } @@ -216,8 +184,7 @@ public class HDFArray { _barray = new byte[ArrayDescriptor.totalSize]; } catch (OutOfMemoryError err) { - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: byteify array too big?"); + HDF5JavaException ex = new HDF5JavaException("HDFArray: byteify array too big?"); throw (ex); } @@ -240,8 +207,7 @@ public class HDFArray { else { /* check range of index */ if (index > (ArrayDescriptor.dimlen[i] - 1)) { - throw new java.lang.IndexOutOfBoundsException( - "HDFArray: byteify index OOB?"); + throw new java.lang.IndexOutOfBoundsException("HDFArray: byteify index OOB?"); } oo = java.lang.reflect.Array.get(oo, index); ArrayDescriptor.currentindex[i] = index; @@ -253,242 +219,185 @@ public class HDFArray { byte arow[]; try { if (ArrayDescriptor.NT == 'J') { - arow = HDFNativeData - .longToByte( - 0, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - (long[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); - arow = HDFNativeData - .longToByte( - 0, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - (long[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); + arow = HDFNativeData.longToByte(0, ArrayDescriptor.dimlen[ArrayDescriptor.dims], + (long[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); } else if (ArrayDescriptor.NT == 'I') { - arow = HDFNativeData - .intToByte( - 0, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - (int[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); + arow = HDFNativeData.intToByte(0, ArrayDescriptor.dimlen[ArrayDescriptor.dims], + (int[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); } else if (ArrayDescriptor.NT == 'S') { - arow = HDFNativeData - .shortToByte( - 0, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - (short[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); + arow = HDFNativeData.shortToByte(0, ArrayDescriptor.dimlen[ArrayDescriptor.dims], + (short[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); } else if (ArrayDescriptor.NT == 'B') { arow = (byte[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]; } else if (ArrayDescriptor.NT == 'F') { /* 32 bit float */ - arow = HDFNativeData - .floatToByte( - 0, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - (float[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); + arow = HDFNativeData.floatToByte(0, ArrayDescriptor.dimlen[ArrayDescriptor.dims], + (float[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); } else if (ArrayDescriptor.NT == 'D') { /* 64 bit float */ - arow = HDFNativeData - .doubleToByte( - 0, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - (double[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); + arow = HDFNativeData.doubleToByte(0, ArrayDescriptor.dimlen[ArrayDescriptor.dims], + (double[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); } else if (ArrayDescriptor.NT == 'L') { if (ArrayDescriptor.className.equals("java.lang.Byte")) { arow = ByteObjToByte((Byte[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); } - else if (ArrayDescriptor.className - .equals("java.lang.Integer")) { + else if (ArrayDescriptor.className.equals("java.lang.Integer")) { arow = IntegerToByte((Integer[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); } - else if (ArrayDescriptor.className - .equals("java.lang.Short")) { + else if (ArrayDescriptor.className.equals("java.lang.Short")) { arow = ShortToByte((Short[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); } - else if (ArrayDescriptor.className - .equals("java.lang.Float")) { + else if (ArrayDescriptor.className.equals("java.lang.Float")) { arow = FloatObjToByte((Float[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); } - else if (ArrayDescriptor.className - .equals("java.lang.Double")) { + else if (ArrayDescriptor.className.equals("java.lang.Double")) { arow = DoubleObjToByte((Double[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); } else if (ArrayDescriptor.className.equals("java.lang.Long")) { arow = LongObjToByte((Long[]) ArrayDescriptor.objs[ArrayDescriptor.dims - 1]); } else { - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: byteify Object type not implemented?"); + HDF5JavaException ex = new HDF5JavaException("HDFArray: byteify Object type not implemented?"); throw (ex); } } else { - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: byteify unknown type not implemented?"); + HDF5JavaException ex = new HDF5JavaException("HDFArray: byteify unknown type not implemented?"); throw (ex); } - System - .arraycopy( - arow, - 0, - _barray, - n, - (ArrayDescriptor.dimlen[ArrayDescriptor.dims] * ArrayDescriptor.NTsize)); + System.arraycopy(arow, 0, _barray, n, + (ArrayDescriptor.dimlen[ArrayDescriptor.dims] * ArrayDescriptor.NTsize)); n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1]; } catch (OutOfMemoryError err) { - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: byteify array too big?"); + HDF5JavaException ex = new HDF5JavaException("HDFArray: byteify array too big?"); throw (ex); } } /* assert: the whole array is completed--currentindex should == len - 1 */ - /* error checks */ - if (n < ArrayDescriptor.totalSize) { - throw new java.lang.InternalError(new String( - "HDFArray::byteify: Panic didn't complete all input data: n= " - + n + " size = " + ArrayDescriptor.totalSize)); + throw new java.lang.InternalError(new String("HDFArray::byteify: Panic didn't complete all input data: n= " + + n + " size = " + ArrayDescriptor.totalSize)); } for (i = 0; i < ArrayDescriptor.dims; i++) { if (ArrayDescriptor.currentindex[i] != ArrayDescriptor.dimlen[i] - 1) { throw new java.lang.InternalError(new String( - "Panic didn't complete all data: currentindex[" + i - + "] = " + ArrayDescriptor.currentindex[i] - + " (should be " - + (ArrayDescriptor.dimlen[i] - 1) + " ?)")); + "Panic didn't complete all data: currentindex[" + i + "] = " + ArrayDescriptor.currentindex[i] + + " (should be " + (ArrayDescriptor.dimlen[i] - 1) + " ?)")); } } return _barray; } /** - * Given a one-dimensional array of bytes representing numbers, convert it - * to a java array of the shape and size passed to the constructor. + * Given a one-dimensional array of bytes representing numbers, convert it to a java array of the shape and size + * passed to the constructor. * * @param bytes - * The bytes to construct the Array. - * @return An Array (possibly multidimensional) of primitive or number - * objects. - * @exception hdf.hdf5lib.exceptions.HDF5JavaException - * the object not an array or other internal error. + * The bytes to construct the Array. + * @return + * An Array (possibly multidimensional) of primitive or number objects. + * @exception + * hdf.hdf5lib.exceptions.HDF5JavaException the object not an array or other internal error. */ - public Object arrayify(byte[] bytes) throws HDF5JavaException { - + public Object arrayify(byte[] bytes) throws HDF5JavaException + { if (_theArray == null) { /* exception: not an array */ - HDF5JavaException ex = new HDF5JavaException( - "arrayify: not an array?: "); + HDF5JavaException ex = new HDF5JavaException("arrayify: not an array?: "); throw (ex); } if (java.lang.reflect.Array.getLength(bytes) != ArrayDescriptor.totalSize) { /* exception: array not right size */ - HDF5JavaException ex = new HDF5JavaException( - "arrayify: array is wrong size?: "); + HDF5JavaException ex = new HDF5JavaException("arrayify: array is wrong size?: "); throw (ex); } _barray = bytes; /* hope that the bytes are correct.... */ + if (ArrayDescriptor.dims == 1) { /* special case */ /* 2 data copies here! */ try { if (ArrayDescriptor.NT == 'I') { int[] x = HDFNativeData.byteToInt(_barray); - System.arraycopy(x, 0, _theArray, 0, - ArrayDescriptor.dimlen[1]); + System.arraycopy(x, 0, _theArray, 0, ArrayDescriptor.dimlen[1]); return _theArray; } else if (ArrayDescriptor.NT == 'S') { short[] x = HDFNativeData.byteToShort(_barray); - System.arraycopy(x, 0, _theArray, 0, - ArrayDescriptor.dimlen[1]); + System.arraycopy(x, 0, _theArray, 0, ArrayDescriptor.dimlen[1]); return _theArray; } else if (ArrayDescriptor.NT == 'F') { float x[] = HDFNativeData.byteToFloat(_barray); - System.arraycopy(x, 0, _theArray, 0, - ArrayDescriptor.dimlen[1]); + System.arraycopy(x, 0, _theArray, 0, ArrayDescriptor.dimlen[1]); return _theArray; } else if (ArrayDescriptor.NT == 'J') { long x[] = HDFNativeData.byteToLong(_barray); - System.arraycopy(x, 0, _theArray, 0, - ArrayDescriptor.dimlen[1]); + System.arraycopy(x, 0, _theArray, 0, ArrayDescriptor.dimlen[1]); return _theArray; } else if (ArrayDescriptor.NT == 'D') { double x[] = HDFNativeData.byteToDouble(_barray); - System.arraycopy(x, 0, _theArray, 0, - ArrayDescriptor.dimlen[1]); + System.arraycopy(x, 0, _theArray, 0, ArrayDescriptor.dimlen[1]); return _theArray; } else if (ArrayDescriptor.NT == 'B') { - System.arraycopy(_barray, 0, _theArray, 0, - ArrayDescriptor.dimlen[1]); + System.arraycopy(_barray, 0, _theArray, 0, ArrayDescriptor.dimlen[1]); return _theArray; } else if (ArrayDescriptor.NT == 'L') { if (ArrayDescriptor.className.equals("java.lang.Byte")) { Byte I[] = ByteToByteObj(_barray); - System.arraycopy(I, 0, _theArray, 0, - ArrayDescriptor.dimlen[1]); + System.arraycopy(I, 0, _theArray, 0, ArrayDescriptor.dimlen[1]); return _theArray; } - else if (ArrayDescriptor.className - .equals("java.lang.Integer")) { + else if (ArrayDescriptor.className.equals("java.lang.Integer")) { Integer I[] = ByteToInteger(_barray); - System.arraycopy(I, 0, _theArray, 0, - ArrayDescriptor.dimlen[1]); + System.arraycopy(I, 0, _theArray, 0, ArrayDescriptor.dimlen[1]); return _theArray; } - else if (ArrayDescriptor.className - .equals("java.lang.Short")) { + else if (ArrayDescriptor.className.equals("java.lang.Short")) { Short I[] = ByteToShort(_barray); - System.arraycopy(I, 0, _theArray, 0, - ArrayDescriptor.dimlen[1]); + System.arraycopy(I, 0, _theArray, 0, ArrayDescriptor.dimlen[1]); return _theArray; } - else if (ArrayDescriptor.className - .equals("java.lang.Float")) { + else if (ArrayDescriptor.className.equals("java.lang.Float")) { Float I[] = ByteToFloatObj(_barray); - System.arraycopy(I, 0, _theArray, 0, - ArrayDescriptor.dimlen[1]); + System.arraycopy(I, 0, _theArray, 0, ArrayDescriptor.dimlen[1]); return _theArray; } - else if (ArrayDescriptor.className - .equals("java.lang.Double")) { + else if (ArrayDescriptor.className.equals("java.lang.Double")) { Double I[] = ByteToDoubleObj(_barray); - System.arraycopy(I, 0, _theArray, 0, - ArrayDescriptor.dimlen[1]); + System.arraycopy(I, 0, _theArray, 0, ArrayDescriptor.dimlen[1]); return _theArray; } else if (ArrayDescriptor.className.equals("java.lang.Long")) { Long I[] = ByteToLongObj(_barray); - System.arraycopy(I, 0, _theArray, 0, - ArrayDescriptor.dimlen[1]); + System.arraycopy(I, 0, _theArray, 0, ArrayDescriptor.dimlen[1]); return _theArray; } else { - HDF5JavaException ex = new HDF5JavaException( - "arrayify: Object type not implemented yet..."); + HDF5JavaException ex = new HDF5JavaException("arrayify: Object type not implemented yet..."); throw (ex); } } else { - HDF5JavaException ex = new HDF5JavaException( - "arrayify: unknown type not implemented yet..."); + HDF5JavaException ex = new HDF5JavaException("arrayify: unknown type not implemented yet..."); throw (ex); } } catch (OutOfMemoryError err) { - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: arrayify array too big?"); + HDF5JavaException ex = new HDF5JavaException("HDFArray: arrayify array too big?"); throw (ex); } } @@ -496,8 +405,54 @@ public class HDFArray { Object oo = _theArray; int n = 0; /* the current byte */ + int m = 0; /* the current array index */ int index = 0; int i; + Object flattenedArray = null; + + switch (ArrayDescriptor.NT) { + case 'J': + flattenedArray = (Object) HDFNativeData.byteToLong(_barray); + break; + case 'S': + flattenedArray = (Object) HDFNativeData.byteToShort(_barray); + break; + case 'I': + flattenedArray = (Object) HDFNativeData.byteToInt(_barray); + break; + case 'F': + flattenedArray = (Object) HDFNativeData.byteToFloat(_barray); + break; + case 'D': + flattenedArray = (Object) HDFNativeData.byteToDouble(_barray); + break; + case 'B': + flattenedArray = (Object) _barray; + break; + case 'L': + { + if (ArrayDescriptor.className.equals("java.lang.Byte")) + flattenedArray = (Object) ByteToByteObj(_barray); + else if (ArrayDescriptor.className.equals("java.lang.Short")) + flattenedArray = (Object) ByteToShort(_barray); + else if (ArrayDescriptor.className.equals("java.lang.Integer")) + flattenedArray = (Object) ByteToInteger(_barray); + else if (ArrayDescriptor.className.equals("java.lang.Long")) + flattenedArray = (Object) ByteToLongObj(_barray); + else if (ArrayDescriptor.className.equals("java.lang.Float")) + flattenedArray = (Object) ByteToFloatObj(_barray); + else if (ArrayDescriptor.className.equals("java.lang.Double")) + flattenedArray = (Object) ByteToDoubleObj(_barray); + else { + HDF5JavaException ex = new HDF5JavaException("HDFArray: unsupported Object type: " + ArrayDescriptor.NT); + throw (ex); + } + } // end of statement for arrays of boxed objects + default: + HDF5JavaException ex = new HDF5JavaException("HDFArray: unknown or unsupported type: " + ArrayDescriptor.NT); + throw (ex); + } // end of switch statement for arrays of primitives + while (n < ArrayDescriptor.totalSize) { oo = ArrayDescriptor.objs[0]; index = n / ArrayDescriptor.bytetoindex[0]; @@ -524,222 +479,85 @@ public class HDFArray { /* array-ify */ try { - if (ArrayDescriptor.NT == 'J') { - long[] arow = HDFNativeData.byteToLong(n, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - _barray); - java.lang.reflect.Array - .set( - ArrayDescriptor.objs[ArrayDescriptor.dims - 2], - (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]), - arow); - n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1]; - ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++; - } - else if (ArrayDescriptor.NT == 'I') { - int[] arow = HDFNativeData.byteToInt(n, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - _barray); - java.lang.reflect.Array - .set( - ArrayDescriptor.objs[ArrayDescriptor.dims - 2], - (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]), - arow); - - n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1]; - ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++; - } - else if (ArrayDescriptor.NT == 'S') { - short[] arow = HDFNativeData.byteToShort(n, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - _barray); - java.lang.reflect.Array - .set( - ArrayDescriptor.objs[ArrayDescriptor.dims - 2], - (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]), - arow); - - n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1]; - ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++; - } - else if (ArrayDescriptor.NT == 'B') { - System.arraycopy(_barray, n, - ArrayDescriptor.objs[ArrayDescriptor.dims - 1], 0, - ArrayDescriptor.dimlen[ArrayDescriptor.dims]); - n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1]; - } - else if (ArrayDescriptor.NT == 'F') { - float arow[] = HDFNativeData.byteToFloat(n, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - _barray); - java.lang.reflect.Array - .set( - ArrayDescriptor.objs[ArrayDescriptor.dims - 2], - (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]), - arow); - - n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1]; - ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++; - } - else if (ArrayDescriptor.NT == 'D') { - double[] arow = HDFNativeData.byteToDouble(n, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - _barray); - java.lang.reflect.Array - .set( - ArrayDescriptor.objs[ArrayDescriptor.dims - 2], - (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]), - arow); - - n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1]; - ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++; - } - else if (ArrayDescriptor.NT == 'L') { - if (ArrayDescriptor.className.equals("java.lang.Byte")) { - Byte I[] = ByteToByteObj(n, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - _barray); - java.lang.reflect.Array - .set( - ArrayDescriptor.objs[ArrayDescriptor.dims - 2], - (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]), - I); - - n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1]; - ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++; - } - else if (ArrayDescriptor.className - .equals("java.lang.Integer")) { - Integer I[] = ByteToInteger(n, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - _barray); - java.lang.reflect.Array - .set( - ArrayDescriptor.objs[ArrayDescriptor.dims - 2], - (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]), - I); - - n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1]; - ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++; - } - else if (ArrayDescriptor.className - .equals("java.lang.Short")) { - Short I[] = ByteToShort(n, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - _barray); - java.lang.reflect.Array - .set( - ArrayDescriptor.objs[ArrayDescriptor.dims - 2], - (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]), - I); - - n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1]; - ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++; - } - else if (ArrayDescriptor.className - .equals("java.lang.Float")) { - Float I[] = ByteToFloatObj(n, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - _barray); - java.lang.reflect.Array - .set( - ArrayDescriptor.objs[ArrayDescriptor.dims - 2], - (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]), - I); - - n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1]; - ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++; - } - else if (ArrayDescriptor.className - .equals("java.lang.Double")) { - Double I[] = ByteToDoubleObj(n, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - _barray); - java.lang.reflect.Array - .set( - ArrayDescriptor.objs[ArrayDescriptor.dims - 2], - (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]), - I); - - n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1]; - ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++; - } - else if (ArrayDescriptor.className.equals("java.lang.Long")) { - Long I[] = ByteToLongObj(n, - ArrayDescriptor.dimlen[ArrayDescriptor.dims], - _barray); - java.lang.reflect.Array - .set( - ArrayDescriptor.objs[ArrayDescriptor.dims - 2], - (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]), - I); - - n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1]; - ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++; - } - else { - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: unsupported Object type: " - + ArrayDescriptor.NT); - throw (ex); - } - } - else { - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: unknown or unsupported type: " - + ArrayDescriptor.NT); - throw (ex); - } + Object arow = null; + int mm = m + ArrayDescriptor.dimlen[ArrayDescriptor.dims]; + switch (ArrayDescriptor.NT) { + case 'B': + arow = (Object) Arrays.copyOfRange((byte[]) flattenedArray, m, mm); + break; + case 'S': + arow = (Object) Arrays.copyOfRange((short[]) flattenedArray, m, mm); + break; + case 'I': + arow = (Object) Arrays.copyOfRange((int[]) flattenedArray, m, mm); + break; + case 'J': + arow = (Object) Arrays.copyOfRange((long[]) flattenedArray, m, mm); + break; + case 'F': + arow = (Object) Arrays.copyOfRange((float[]) flattenedArray, m, mm); + break; + case 'D': + arow = (Object) Arrays.copyOfRange((double[]) flattenedArray, m, mm); + break; + case 'L': + { + if (ArrayDescriptor.className.equals("java.lang.Byte")) + arow = (Object) Arrays.copyOfRange((Byte[]) flattenedArray, m, mm); + else if (ArrayDescriptor.className.equals("java.lang.Short")) + arow = (Object) Arrays.copyOfRange((Short[]) flattenedArray, m, mm); + else if (ArrayDescriptor.className.equals("java.lang.Integer")) + arow = (Object) Arrays.copyOfRange((Integer[]) flattenedArray, m, mm); + else if (ArrayDescriptor.className.equals("java.lang.Long")) + arow = (Object) Arrays.copyOfRange((Long[]) flattenedArray, m, mm); + else if (ArrayDescriptor.className.equals("java.lang.Float")) + arow = (Object) Arrays.copyOfRange((Float[]) flattenedArray, m, mm); + else if (ArrayDescriptor.className.equals("java.lang.Double")) + arow = (Object) Arrays.copyOfRange((Double[]) flattenedArray, m, mm); + else { + HDF5JavaException ex = new HDF5JavaException("HDFArray: unsupported Object type: " + ArrayDescriptor.NT); + throw (ex); + } + } // end of statement for arrays of boxed numerics + } // end of switch statement for arrays of primitives + + java.lang.reflect.Array.set(ArrayDescriptor.objs[ArrayDescriptor.dims - 2], + (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]), arow); + n += ArrayDescriptor.bytetoindex[ArrayDescriptor.dims - 1]; + ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1]++; + m = mm; } catch (OutOfMemoryError err) { - HDF5JavaException ex = new HDF5JavaException( - "HDFArray: arrayify array too big?"); + HDF5JavaException ex = new HDF5JavaException("HDFArray: arrayify array too big?"); throw (ex); } - } /* assert: the whole array is completed--currentindex should == len - 1 */ - /* error checks */ - if (n < ArrayDescriptor.totalSize) { - throw new java.lang.InternalError(new String( - "HDFArray::arrayify Panic didn't complete all input data: n= " - + n + " size = " + ArrayDescriptor.totalSize)); + throw new java.lang.InternalError(new String("HDFArray::arrayify Panic didn't complete all input data: n= " + + n + " size = " + ArrayDescriptor.totalSize)); } for (i = 0; i <= ArrayDescriptor.dims - 2; i++) { if (ArrayDescriptor.currentindex[i] != ArrayDescriptor.dimlen[i] - 1) { - throw new java.lang.InternalError(new String( - "HDFArray::arrayify Panic didn't complete all data: currentindex[" - + i + "] = " + ArrayDescriptor.currentindex[i] - + " (should be " - + (ArrayDescriptor.dimlen[i] - 1) + "?")); - } - } - if (ArrayDescriptor.NT != 'B') { - if (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1] != ArrayDescriptor.dimlen[ArrayDescriptor.dims - 1]) { - throw new java.lang.InternalError(new String( - "HDFArray::arrayify Panic didn't complete all data: currentindex[" - + i + "] = " + ArrayDescriptor.currentindex[i] - + " (should be " + (ArrayDescriptor.dimlen[i]) + throw new java.lang.InternalError( + new String("HDFArray::arrayify Panic didn't complete all data: currentindex[" + i + "] = " + + ArrayDescriptor.currentindex[i] + " (should be " + (ArrayDescriptor.dimlen[i] - 1) + "?")); } } - else { - if (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1] != (ArrayDescriptor.dimlen[ArrayDescriptor.dims - 1] - 1)) { - throw new java.lang.InternalError(new String( - "HDFArray::arrayify Panic didn't complete all data: currentindex[" - + i + "] = " + ArrayDescriptor.currentindex[i] - + " (should be " - + (ArrayDescriptor.dimlen[i] - 1) + "?")); - } + if (ArrayDescriptor.currentindex[ArrayDescriptor.dims - 1] != ArrayDescriptor.dimlen[ArrayDescriptor.dims - 1]) { + throw new java.lang.InternalError( + new String("HDFArray::arrayify Panic didn't complete all data: currentindex[" + i + "] = " + + ArrayDescriptor.currentindex[i] + " (should be " + (ArrayDescriptor.dimlen[i]) + "?")); } return _theArray; } - private byte[] IntegerToByte(Integer in[]) { + private byte[] IntegerToByte(Integer in[]) + { int nelems = java.lang.reflect.Array.getLength(in); int[] out = new int[nelems]; @@ -749,29 +567,32 @@ public class HDFArray { return HDFNativeData.intToByte(0, nelems, out); } - private Integer[] ByteToInteger(byte[] bin) { + private Integer[] ByteToInteger(byte[] bin) + { int in[] = HDFNativeData.byteToInt(bin); int nelems = java.lang.reflect.Array.getLength(in); Integer[] out = new Integer[nelems]; for (int i = 0; i < nelems; i++) { - out[i] = new Integer(in[i]); + out[i] = Integer.valueOf(in[i]); } return out; } - private Integer[] ByteToInteger(int start, int len, byte[] bin) { + private Integer[] ByteToInteger(int start, int len, byte[] bin) + { int in[] = HDFNativeData.byteToInt(start, len, bin); int nelems = java.lang.reflect.Array.getLength(in); Integer[] out = new Integer[nelems]; for (int i = 0; i < nelems; i++) { - out[i] = new Integer(in[i]); + out[i] = Integer.valueOf(in[i]); } return out; } - private byte[] ShortToByte(Short in[]) { + private byte[] ShortToByte(Short in[]) + { int nelems = java.lang.reflect.Array.getLength(in); short[] out = new short[nelems]; @@ -781,29 +602,32 @@ public class HDFArray { return HDFNativeData.shortToByte(0, nelems, out); } - private Short[] ByteToShort(byte[] bin) { + private Short[] ByteToShort(byte[] bin) + { short in[] = HDFNativeData.byteToShort(bin); int nelems = java.lang.reflect.Array.getLength((Object) in); Short[] out = new Short[nelems]; for (int i = 0; i < nelems; i++) { - out[i] = new Short(in[i]); + out[i] = Short.valueOf(in[i]); } return out; } - private Short[] ByteToShort(int start, int len, byte[] bin) { + private Short[] ByteToShort(int start, int len, byte[] bin) + { short in[] = (short[]) HDFNativeData.byteToShort(start, len, bin); int nelems = java.lang.reflect.Array.getLength((Object) in); Short[] out = new Short[nelems]; for (int i = 0; i < nelems; i++) { - out[i] = new Short(in[i]); + out[i] = Short.valueOf(in[i]); } return out; } - private byte[] ByteObjToByte(Byte in[]) { + private byte[] ByteObjToByte(Byte in[]) + { int nelems = java.lang.reflect.Array.getLength((Object) in); byte[] out = new byte[nelems]; @@ -813,26 +637,29 @@ public class HDFArray { return out; } - private Byte[] ByteToByteObj(byte[] bin) { + private Byte[] ByteToByteObj(byte[] bin) + { int nelems = java.lang.reflect.Array.getLength((Object) bin); Byte[] out = new Byte[nelems]; for (int i = 0; i < nelems; i++) { - out[i] = new Byte(bin[i]); + out[i] = Byte.valueOf(bin[i]); } return out; } - private Byte[] ByteToByteObj(int start, int len, byte[] bin) { + private Byte[] ByteToByteObj(int start, int len, byte[] bin) + { Byte[] out = new Byte[len]; for (int i = 0; i < len; i++) { - out[i] = new Byte(bin[i]); + out[i] = Byte.valueOf(bin[i]); } return out; } - private byte[] FloatObjToByte(Float in[]) { + private byte[] FloatObjToByte(Float in[]) + { int nelems = java.lang.reflect.Array.getLength((Object) in); float[] out = new float[nelems]; @@ -842,29 +669,32 @@ public class HDFArray { return HDFNativeData.floatToByte(0, nelems, out); } - private Float[] ByteToFloatObj(byte[] bin) { + private Float[] ByteToFloatObj(byte[] bin) + { float in[] = (float[]) HDFNativeData.byteToFloat(bin); int nelems = java.lang.reflect.Array.getLength((Object) in); Float[] out = new Float[nelems]; for (int i = 0; i < nelems; i++) { - out[i] = new Float(in[i]); + out[i] = Float.valueOf(in[i]); } return out; } - private Float[] ByteToFloatObj(int start, int len, byte[] bin) { + private Float[] ByteToFloatObj(int start, int len, byte[] bin) + { float in[] = (float[]) HDFNativeData.byteToFloat(start, len, bin); int nelems = java.lang.reflect.Array.getLength((Object) in); Float[] out = new Float[nelems]; for (int i = 0; i < nelems; i++) { - out[i] = new Float(in[i]); + out[i] = Float.valueOf(in[i]); } return out; } - private byte[] DoubleObjToByte(Double in[]) { + private byte[] DoubleObjToByte(Double in[]) + { int nelems = java.lang.reflect.Array.getLength((Object) in); double[] out = new double[nelems]; @@ -874,29 +704,32 @@ public class HDFArray { return HDFNativeData.doubleToByte(0, nelems, out); } - private Double[] ByteToDoubleObj(byte[] bin) { + private Double[] ByteToDoubleObj(byte[] bin) + { double in[] = (double[]) HDFNativeData.byteToDouble(bin); int nelems = java.lang.reflect.Array.getLength((Object) in); Double[] out = new Double[nelems]; for (int i = 0; i < nelems; i++) { - out[i] = new Double(in[i]); + out[i] = Double.valueOf(in[i]); } return out; } - private Double[] ByteToDoubleObj(int start, int len, byte[] bin) { + private Double[] ByteToDoubleObj(int start, int len, byte[] bin) + { double in[] = (double[]) HDFNativeData.byteToDouble(start, len, bin); int nelems = java.lang.reflect.Array.getLength((Object) in); Double[] out = new Double[nelems]; for (int i = 0; i < nelems; i++) { - out[i] = new Double(in[i]); + out[i] = Double.valueOf(in[i]); } return out; } - private byte[] LongObjToByte(Long in[]) { + private byte[] LongObjToByte(Long in[]) + { int nelems = java.lang.reflect.Array.getLength((Object) in); long[] out = new long[nelems]; @@ -906,37 +739,37 @@ public class HDFArray { return HDFNativeData.longToByte(0, nelems, out); } - private Long[] ByteToLongObj(byte[] bin) { + private Long[] ByteToLongObj(byte[] bin) + { long in[] = (long[]) HDFNativeData.byteToLong(bin); int nelems = java.lang.reflect.Array.getLength((Object) in); Long[] out = new Long[nelems]; for (int i = 0; i < nelems; i++) { - out[i] = new Long(in[i]); + out[i] = Long.valueOf(in[i]); } return out; } - private Long[] ByteToLongObj(int start, int len, byte[] bin) { + private Long[] ByteToLongObj(int start, int len, byte[] bin) + { long in[] = (long[]) HDFNativeData.byteToLong(start, len, bin); int nelems = java.lang.reflect.Array.getLength((Object) in); Long[] out = new Long[nelems]; for (int i = 0; i < nelems; i++) { - out[i] = new Long(in[i]); + out[i] = Long.valueOf(in[i]); } return out; } } /** - * This private class is used by HDFArray to discover the shape and type of an - * arbitrary array. + * This private class is used by HDFArray to discover the shape and type of an arbitrary array. * <p> * We use java.lang.reflection here. */ class ArrayDescriptor { - static String theType = ""; static Class theClass = null; static int[] dimlen = null; @@ -944,19 +777,19 @@ class ArrayDescriptor { static int[] currentindex = null; static int[] bytetoindex = null; static int totalSize = 0; + static int totalElements = 0; static Object[] objs = null; static char NT = ' '; /* must be B,S,I,L,F,D, else error */ static int NTsize = 0; static int dims = 0; static String className; - public ArrayDescriptor(Object anArray) throws HDF5Exception { - + public ArrayDescriptor(Object anArray) throws HDF5JavaException + { Class tc = anArray.getClass(); if (tc.isArray() == false) { /* exception: not an array */ - HDF5Exception ex = new HDF5JavaException( - "ArrayDescriptor: not an array?: "); + HDF5JavaException ex = new HDF5JavaException("ArrayDescriptor: not an array?: "); throw (ex); } @@ -1028,16 +861,14 @@ class ArrayDescriptor { NT = 'L'; className = "java.lang.String"; NTsize = 1; - throw new HDF5JavaException(new String( - "ArrayDesciptor: Warning: String array not fully supported yet")); + throw new HDF5JavaException(new String("ArrayDesciptor: Warning: String array not fully supported yet")); } else { /* * exception: not a numeric type */ - throw new HDF5JavaException(new String( - "ArrayDesciptor: Error: array is not numeric (type is " - + css + ") ?")); + throw new HDF5JavaException( + new String("ArrayDesciptor: Error: array is not numeric (type is " + css + ") ?")); } /* fill in the table */ @@ -1052,6 +883,7 @@ class ArrayDescriptor { dimlen[0] = 1; dimstart[0] = 0; currentindex[0] = 0; + int elements = 1; int i; for (i = 1; i <= dims; i++) { dimlen[i] = java.lang.reflect.Array.getLength((Object) o); @@ -1059,7 +891,9 @@ class ArrayDescriptor { objs[i] = o; dimstart[i] = 0; currentindex[i] = 0; + elements *= dimlen[i]; } + totalElements = elements; int j; int dd; @@ -1078,20 +912,19 @@ class ArrayDescriptor { /** * Debug dump */ - public void dumpInfo() { + public void dumpInfo() + { System.out.println("Type: " + theType); System.out.println("Class: " + theClass); System.out.println("NT: " + NT + " NTsize: " + NTsize); System.out.println("Array has " + dims + " dimensions (" + totalSize - + " bytes)"); + + " bytes, " + totalElements + " elements)"); int i; for (i = 0; i <= dims; i++) { Class tc = objs[i].getClass(); String ss = tc.toString(); - System.out.println(i + ": start " + dimstart[i] + ": len " - + dimlen[i] + " current " + currentindex[i] - + " bytetoindex " + bytetoindex[i] + " object " + objs[i] - + " otype " + ss); + System.out.println(i + ": start " + dimstart[i] + ": len " + dimlen[i] + " current " + currentindex[i] + + " bytetoindex " + bytetoindex[i] + " object " + objs[i] + " otype " + ss); } } } diff --git a/java/src/hdf/hdf5lib/HDFNativeData.java b/java/src/hdf/hdf5lib/HDFNativeData.java index 9637f62..85378db 100644 --- a/java/src/hdf/hdf5lib/HDFNativeData.java +++ b/java/src/hdf/hdf5lib/HDFNativeData.java @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -153,8 +153,7 @@ public class HDFNativeData { * The input array of bytes * @return an array of 'len' float */ - public synchronized static native float[] byteToFloat(int start, int len, - byte[] data); + public synchronized static native float[] byteToFloat(int start, int len, byte[] data); /** * Convert 4 bytes from an array of bytes into a single float @@ -437,41 +436,38 @@ public class HDFNativeData { * - Error unsupported type. */ public synchronized static Object byteToNumber(byte[] barray, Object obj) - throws HDF5Exception { + throws HDF5Exception + { Class theClass = obj.getClass(); String type = theClass.getName(); Object retobj = null; if (type.equals("java.lang.Integer")) { int[] i = hdf.hdf5lib.HDFNativeData.byteToInt(0, 1, barray); - retobj = new Integer(i[0]); + retobj = Integer.valueOf(i[0]); } else if (type.equals("java.lang.Byte")) { - retobj = new Byte(barray[0]); + retobj = Byte.valueOf(barray[0]); } else if (type.equals("java.lang.Short")) { - short[] f = hdf.hdf5lib.HDFNativeData - .byteToShort(0, 1, barray); - retobj = new Short(f[0]); + short[] f = hdf.hdf5lib.HDFNativeData.byteToShort(0, 1, barray); + retobj = Short.valueOf(f[0]); } else if (type.equals("java.lang.Float")) { - float[] f = hdf.hdf5lib.HDFNativeData - .byteToFloat(0, 1, barray); - retobj = new Float(f[0]); + float[] f = hdf.hdf5lib.HDFNativeData.byteToFloat(0, 1, barray); + retobj = Float.valueOf(f[0]); } else if (type.equals("java.lang.Long")) { long[] f = hdf.hdf5lib.HDFNativeData.byteToLong(0, 1, barray); - retobj = new Long(f[0]); + retobj = Long.valueOf(f[0]); } else if (type.equals("java.lang.Double")) { - double[] f = hdf.hdf5lib.HDFNativeData.byteToDouble(0, 1, - barray); - retobj = new Double(f[0]); + double[] f = hdf.hdf5lib.HDFNativeData.byteToDouble(0, 1, barray); + retobj = Double.valueOf(f[0]); } else { /* exception: unsupported type */ - HDF5Exception ex = new HDF5JavaException( - "byteToNumber: setfield bad type: " + obj + " " + type); + HDF5Exception ex = new HDF5JavaException("byteToNumber: setfield bad type: " + obj + " " + type); throw (ex); } return (retobj); diff --git a/java/src/hdf/hdf5lib/callbacks/Callbacks.java b/java/src/hdf/hdf5lib/callbacks/Callbacks.java index 9fc961a..11fa465 100644 --- a/java/src/hdf/hdf5lib/callbacks/Callbacks.java +++ b/java/src/hdf/hdf5lib/callbacks/Callbacks.java @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ diff --git a/java/src/hdf/hdf5lib/callbacks/H5A_iterate_cb.java b/java/src/hdf/hdf5lib/callbacks/H5A_iterate_cb.java index 988c8fb..6c68f36 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5A_iterate_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5A_iterate_cb.java @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -15,7 +14,28 @@ package hdf.hdf5lib.callbacks; import hdf.hdf5lib.structs.H5A_info_t; -//Information class for link callback(for H5Aiterate) +/** + * Information class for link callback for H5Aiterate. + * + */ public interface H5A_iterate_cb extends Callbacks { - int callback(long group, String name, H5A_info_t info, H5A_iterate_t op_data); + /** + * application callback for each attribute + * + * @param loc_id the ID for the group or dataset being iterated over + * @param name the name of the current attribute about the object + * @param info the attribute's "info" struct + * @param op_data the operator data passed in to H5Aiterate + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ + int callback(long loc_id, String name, H5A_info_t info, H5A_iterate_t op_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java index 51d67d5..d612db3 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java @@ -1,18 +1,21 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package hdf.hdf5lib.callbacks; +/** + * Data class for link callback for H5Aiterate. + * + */ public interface H5A_iterate_t { /** public ArrayList iterdata = new ArrayList(); * Any derived interfaces must define the single public variable as above. diff --git a/java/src/hdf/hdf5lib/callbacks/H5D_append_cb.java b/java/src/hdf/hdf5lib/callbacks/H5D_append_cb.java index ead8f73..cf7ada6 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5D_append_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5D_append_cb.java @@ -1,19 +1,38 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pset/get_append_flush) +/** + * Information class for link callback for H5Pset/get_append_flush. + * + */ public interface H5D_append_cb extends Callbacks { + /** + * application callback for each dataset access property list + * + * @param dataset_id the ID for the dataset being iterated over + * @param cur_dims the dimension sizes for determining boundary + * @param op_data the operator data passed in to H5Pset/get_append_flush + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(long dataset_id, long[] cur_dims, H5D_append_t op_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5D_append_t.java b/java/src/hdf/hdf5lib/callbacks/H5D_append_t.java index 8bf6410..7fdb454 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5D_append_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5D_append_t.java @@ -1,18 +1,21 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package hdf.hdf5lib.callbacks; +/** + * Data class for link callback for H5Dappend. + * + */ public interface H5D_append_t { /** public ArrayList iterdata = new ArrayList(); * Any derived interfaces must define the single public variable as above. diff --git a/java/src/hdf/hdf5lib/callbacks/H5D_iterate_cb.java b/java/src/hdf/hdf5lib/callbacks/H5D_iterate_cb.java index a911a1c..54c12e3 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5D_iterate_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5D_iterate_cb.java @@ -1,19 +1,40 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Diterate) +/** + * Information class for link callback for H5Diterate. + * + */ public interface H5D_iterate_cb extends Callbacks { + /** + * application callback for each dataset element + * + * @param elem the pointer to the element in memory containing the current point + * @param elem_type the datatype ID for the elements stored in elem + * @param ndim the number of dimensions for POINT array + * @param point the array containing the location of the element within the original dataspace + * @param op_data the operator data passed in to H5Diterate + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(byte[] elem, long elem_type, int ndim, long[] point, H5D_iterate_t op_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java index d049711..305cf98 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java @@ -1,18 +1,21 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package hdf.hdf5lib.callbacks; +/** + * Data class for link callback for H5Diterate. + * + */ public interface H5D_iterate_t { /** public ArrayList iterdata = new ArrayList(); * Any derived interfaces must define the single public variable as above. diff --git a/java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java b/java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java index afc04ae..5722195 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -15,7 +14,27 @@ package hdf.hdf5lib.callbacks; import hdf.hdf5lib.structs.H5E_error2_t; -//Information class for link callback(for H5Ewalk) +/** + * Information class for link callback for H5Ewalk. + * + */ public interface H5E_walk_cb extends Callbacks { + /** + * application callback for each error stack element + * + * @param nidx the index of the current error stack element + * @param info the error stack "info" struct + * @param op_data the operator data passed in to H5Ewalk + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(int nidx, H5E_error2_t info, H5E_walk_t op_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java b/java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java index 0be8977..5bf0c8b 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java @@ -1,18 +1,21 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package hdf.hdf5lib.callbacks; +/** + * Data class for link callback for H5Ewalk. + * + */ public interface H5E_walk_t { /** public ArrayList iterdata = new ArrayList(); * Any derived interfaces must define the single public variable as above. diff --git a/java/src/hdf/hdf5lib/callbacks/H5L_iterate_cb.java b/java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java index ec71911..d89fd2a 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5L_iterate_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java @@ -1,21 +1,21 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package hdf.hdf5lib.callbacks; -import hdf.hdf5lib.structs.H5L_info_t; +/** + * Data class for link callback for H5Lvisit/H5Lvisit_by_name. + * + */ +public interface H5L_iterate_opdata_t { -//Information class for link callback(for H5Lvisit/H5Lvisit_by_name) -public interface H5L_iterate_cb extends Callbacks { - int callback(long group, String name, H5L_info_t info, H5L_iterate_t op_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java index 28ffb8a..53635bf 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java @@ -1,20 +1,41 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package hdf.hdf5lib.callbacks; -public interface H5L_iterate_t { -/** public ArrayList iterdata = new ArrayList(); - * Any derived interfaces must define the single public variable as above. - */ +import hdf.hdf5lib.structs.H5L_info_t; + +/** + * Information class for link callback for H5Lvisit/H5Lvisit_by_name. + * + */ +public interface H5L_iterate_t extends Callbacks { + /** + * application callback for each group + * + * @param loc_id the ID for the group being iterated over + * @param name the name of the current link + * @param info the link's "info" struct + * @param op_data the operator data passed in to H5Literate + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ + int callback(long loc_id, String name, H5L_info_t info, H5L_iterate_opdata_t op_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5O_iterate_cb.java b/java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java index 89cf206..fd643b4 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5O_iterate_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java @@ -1,21 +1,21 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package hdf.hdf5lib.callbacks; -import hdf.hdf5lib.structs.H5O_info_t; +/** + * Data class for link callback for H5Ovisit/H5Ovisit_by_name. + * + */ +public interface H5O_iterate_opdata_t { -//Information class for link callback(for H5Ovisit/H5Ovisit_by_name) -public interface H5O_iterate_cb extends Callbacks { - int callback(long group, String name, H5O_info_t info, H5O_iterate_t op_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java index 1491b09..ecf868c 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java @@ -1,20 +1,41 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package hdf.hdf5lib.callbacks; -public interface H5O_iterate_t { -/** public ArrayList iterdata = new ArrayList(); - * Any derived interfaces must define the single public variable as above. - */ +import hdf.hdf5lib.structs.H5O_info_t; + +/** + * Information class for link callback for H5Ovisit/H5Ovisit_by_name. + * + */ +public interface H5O_iterate_t extends Callbacks { + /** + * application callback for each group + * + * @param loc_id the ID for the group or dataset being iterated over + * @param name the name of the current object + * @param info the object's "info" struct + * @param op_data the operator data passed in to H5Oiterate + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ + int callback(long loc_id, String name, H5O_info_t info, H5O_iterate_opdata_t op_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_cb.java index e77d386..0a09a94 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_cb.java @@ -1,19 +1,37 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pcreate_class) +/** + * Information class for link callback for H5Pcreate_class. + * + */ public interface H5P_cls_close_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param prop_id the ID for the property list class being iterated over + * @param close_data the function to call when a property list is closed + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(long prop_id, H5P_cls_close_func_t close_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java index 0d5ad9e..11e3a99 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java @@ -1,18 +1,21 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package hdf.hdf5lib.callbacks; +/** + * Data class for link callback for H5Pcreate_class. + * + */ public interface H5P_cls_close_func_t { /** public ArrayList iterdata = new ArrayList(); * Any derived interfaces must define the single public variable as above. diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_cb.java index 139f877..53f86be 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_cb.java @@ -1,19 +1,38 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pcreate_class) +/** + * Information class for link callback for H5Pcreate_class + * + */ public interface H5P_cls_copy_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param new_prop_id the ID for the property list copy + * @param old_prop_id the ID for the property list class being copied + * @param copy_data the function to call when each property list in this class is copied + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(long new_prop_id, long old_prop_id, H5P_cls_copy_func_t copy_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java index 12c2601..78e5282 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java @@ -1,18 +1,21 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package hdf.hdf5lib.callbacks; +/** + * Data class for link callback for H5Pcreate_class. + * + */ public interface H5P_cls_copy_func_t { /** public ArrayList iterdata = new ArrayList(); * Any derived interfaces must define the single public variable as above. diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_cb.java index e64ec6f..8f4e782 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_cb.java @@ -1,19 +1,37 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pcreate_class) +/** + * Information class for link callback for H5Pcreate_class. + * + */ public interface H5P_cls_create_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param prop_id the ID for the property list class being iterated over + * @param create_data the function to call when each property list in this class is created + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(long prop_id, H5P_cls_create_func_t create_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_t.java b/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_t.java index 73646f1..d919d97 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_cls_create_func_t.java @@ -1,18 +1,21 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package hdf.hdf5lib.callbacks; +/** + * Data class for link callback for H5Pcreate_class. + * + */ public interface H5P_cls_create_func_t { /** public ArrayList iterdata = new ArrayList(); * Any derived interfaces must define the single public variable as above. diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_iterate_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_iterate_cb.java index 5ecb88d..db98a67 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_iterate_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_iterate_cb.java @@ -1,19 +1,38 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Piterate) +/** + * Information class for link callback for H5Piterate. + * + */ public interface H5P_iterate_cb extends Callbacks { + /** + * application callback for each property list + * + * @param plist the ID for the property list being iterated over + * @param name the name of the current property list + * @param op_data the operator data passed in to H5Piterate + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(long plist, String name, H5P_iterate_t op_data); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java b/java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java index 2e320b4..0035619 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java @@ -1,18 +1,21 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package hdf.hdf5lib.callbacks; +/** + * Data class for link callback for H5Piterate. + * + */ public interface H5P_iterate_t { /** public ArrayList iterdata = new ArrayList(); * Any derived interfaces must define the single public variable as above. diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_close_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_close_func_cb.java index 103fe5f..1aa7ce4 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_close_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_close_func_cb.java @@ -1,19 +1,38 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pregister2) +/** + * Information class for link callback for H5Pregister2. + * + */ public interface H5P_prp_close_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param name the name of the property being closed + * @param size the size of the property value + * @param value the value of the property being closed + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(String name, long size, byte[] value); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_compare_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_compare_func_cb.java index 46477b9..49cef7d 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_compare_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_compare_func_cb.java @@ -1,19 +1,38 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pregister2) +/** + * Information class for link callback for H5Pregister2. + * + */ public interface H5P_prp_compare_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param value1 the value of the first property being compared + * @param value2 the value of the second property being compared + * @param size the size of the property value + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(byte[] value1, byte[] value2, long size); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_copy_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_copy_func_cb.java index 57994bb5..f4924ee 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_copy_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_copy_func_cb.java @@ -1,19 +1,38 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pregister2) +/** + * Information class for link callback for H5Pregister2. + * + */ public interface H5P_prp_copy_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param name the name of the property being copied + * @param size the size of the property value + * @param value the value of the property being copied + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(String name, long size, byte[] value); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_create_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_create_func_cb.java index 8791c22..bce024b 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_create_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_create_func_cb.java @@ -1,19 +1,38 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pregister2) +/** + * Information class for link callback for H5Pregister2. + * + */ public interface H5P_prp_create_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param name the name of the property list being created + * @param size the size of the property value + * @param value the initial value for the property being created + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(String name, long size, byte[] value); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_delete_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_delete_func_cb.java index 46cd097..8c5dccc 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_delete_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_delete_func_cb.java @@ -1,19 +1,39 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pregister2) +/** + * Information class for link callback for H5Pregister2. + * + */ public interface H5P_prp_delete_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param prop_id the ID of the property list the property is deleted from + * @param name the name of the property being deleted + * @param size the size of the property value + * @param value the value of the property being deleted + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(long prop_id, String name, long size, byte[] value); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_get_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_get_func_cb.java index 04599a0..0f3457f 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_get_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_get_func_cb.java @@ -1,19 +1,39 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pregister2) +/** + * Information class for link callback for H5Pregister2. + * + */ public interface H5P_prp_get_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param prop_id the ID for the property list being queried + * @param name the name of the property being queried + * @param size the size of the property value + * @param value the value being retrieved for the property + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(long prop_id, String name, long size, byte[] value); } diff --git a/java/src/hdf/hdf5lib/callbacks/H5P_prp_set_func_cb.java b/java/src/hdf/hdf5lib/callbacks/H5P_prp_set_func_cb.java index 6ac750f..a55ca3a 100644 --- a/java/src/hdf/hdf5lib/callbacks/H5P_prp_set_func_cb.java +++ b/java/src/hdf/hdf5lib/callbacks/H5P_prp_set_func_cb.java @@ -1,19 +1,39 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package hdf.hdf5lib.callbacks; -//Information class for link callback(for H5Pregister2) +/** + * Information class for link callback for H5Pregister2. + * + */ public interface H5P_prp_set_func_cb extends Callbacks { + /** + * application callback for each property list + * + * @param prop_id the ID for the property list being modified + * @param name the name of the property being modified + * @param size the size of the property value + * @param value the value being set for the property + * + * @return operation status + * A. Zero causes the iterator to continue, returning zero when all + * attributes have been processed. + * B. Positive causes the iterator to immediately return that positive + * value, indicating short-circuit success. The iterator can be + * restarted at the next attribute. + * C. Negative causes the iterator to immediately return that value, + * indicating failure. The iterator can be restarted at the next + * attribute. + */ int callback(long prop_id, String name, long size, byte[] value); } diff --git a/java/src/hdf/hdf5lib/callbacks/package-info.java b/java/src/hdf/hdf5lib/callbacks/package-info.java new file mode 100644 index 0000000..0833162 --- /dev/null +++ b/java/src/hdf/hdf5lib/callbacks/package-info.java @@ -0,0 +1,27 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://www.hdfgroup.org/licenses. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +/** All callback definitions must derive from the Callbacks interface. Any + * derived interfaces must define a single public method named "callback". + * You are responsible for deregistering your callback (if necessary) + * in its {@link Object#finalize} method. If native code attempts to call + * a callback which has been GC'd, you will likely crash the VM. If + * there is no method to deregister the callback (e.g. <code>atexit</code> + * in the C library), you must ensure that you always keep a live reference + * to the callback object.<p> + * A callback should generally never throw an exception, since it doesn't + * necessarily have an encompassing Java environment to catch it. Any + * exceptions thrown will be passed to the default callback exception + * handler. + */ +package hdf.hdf5lib.callbacks; diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5AttributeException.java b/java/src/hdf/hdf5lib/exceptions/HDF5AttributeException.java index 87b075b..86dad88 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5AttributeException.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5AttributeException.java @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5BtreeException.java b/java/src/hdf/hdf5lib/exceptions/HDF5BtreeException.java index 5118254..97585d3 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5BtreeException.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5BtreeException.java @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5DataFiltersException.java b/java/src/hdf/hdf5lib/exceptions/HDF5DataFiltersException.java index 14ae43f..b02d815 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5DataFiltersException.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5DataFiltersException.java @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5DataStorageException.java b/java/src/hdf/hdf5lib/exceptions/HDF5DataStorageException.java index 721d3ef..416b06a 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5DataStorageException.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5DataStorageException.java @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5DatasetInterfaceException.java b/java/src/hdf/hdf5lib/exceptions/HDF5DatasetInterfaceException.java index 3c55a6b..7bb22fa 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5DatasetInterfaceException.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5DatasetInterfaceException.java @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5DataspaceInterfaceException.java b/java/src/hdf/hdf5lib/exceptions/HDF5DataspaceInterfaceException.java index c0182ee..9a85ff0 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5DataspaceInterfaceException.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5DataspaceInterfaceException.java @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5DatatypeInterfaceException.java b/java/src/hdf/hdf5lib/exceptions/HDF5DatatypeInterfaceException.java index 4da074b..45b0c55 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5DatatypeInterfaceException.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5DatatypeInterfaceException.java @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5Exception.java b/java/src/hdf/hdf5lib/exceptions/HDF5Exception.java index 1e4b5fd..0c23af1 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5Exception.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5Exception.java @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -31,6 +31,9 @@ package hdf.hdf5lib.exceptions; * */ public class HDF5Exception extends RuntimeException { + /** + * the specified detail message of this exception + */ protected String detailMessage; /** diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5ExternalFileListException.java b/java/src/hdf/hdf5lib/exceptions/HDF5ExternalFileListException.java index 28f5437..73bf069 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5ExternalFileListException.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5ExternalFileListException.java @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5FileInterfaceException.java b/java/src/hdf/hdf5lib/exceptions/HDF5FileInterfaceException.java index c8dbcea..ac82258 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5FileInterfaceException.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5FileInterfaceException.java @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5FunctionArgumentException.java b/java/src/hdf/hdf5lib/exceptions/HDF5FunctionArgumentException.java index e7f20e0..c4fcf30 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5FunctionArgumentException.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5FunctionArgumentException.java @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5FunctionEntryExitException.java b/java/src/hdf/hdf5lib/exceptions/HDF5FunctionEntryExitException.java index 26e836f..ee34b59 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5FunctionEntryExitException.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5FunctionEntryExitException.java @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5HeapException.java b/java/src/hdf/hdf5lib/exceptions/HDF5HeapException.java index a32e2a1..1bb3251 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5HeapException.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5HeapException.java @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5AtomException.java b/java/src/hdf/hdf5lib/exceptions/HDF5IdException.java index 850044c..04ee0bc 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5AtomException.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5IdException.java @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -16,26 +16,26 @@ package hdf.hdf5lib.exceptions; /** * The class HDF5LibraryException returns errors raised by the HDF5 library. * <p> - * This sub-class represents HDF-5 major error code <b>H5E_ATOM</b> + * This sub-class represents HDF-5 major error code <b>H5E_ID</b> */ -public class HDF5AtomException extends HDF5LibraryException { +public class HDF5IdException extends HDF5LibraryException { /** - * Constructs an <code>HDF5AtomException</code> with no specified detail + * Constructs an <code>HDF5IdException</code> with no specified detail * message. */ - public HDF5AtomException() { + public HDF5IdException() { super(); } /** - * Constructs an <code>HDF5AtomException</code> with the specified detail + * Constructs an <code>HDF5IdException</code> with the specified detail * message. * * @param s * the detail message. */ - public HDF5AtomException(String s) { + public HDF5IdException(String s) { super(s); } diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5InternalErrorException.java b/java/src/hdf/hdf5lib/exceptions/HDF5InternalErrorException.java index 25ac572..810c126 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5InternalErrorException.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5InternalErrorException.java @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5JavaException.java b/java/src/hdf/hdf5lib/exceptions/HDF5JavaException.java index 7c61194..35720da 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5JavaException.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5JavaException.java @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5LibraryException.java b/java/src/hdf/hdf5lib/exceptions/HDF5LibraryException.java index 54acbdd..9f94882 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5LibraryException.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5LibraryException.java @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -30,7 +30,9 @@ import hdf.hdf5lib.HDF5Constants; @SuppressWarnings("serial") public class HDF5LibraryException extends HDF5Exception { + /** major error number of the first error on the HDF5 library error stack. */ private final long majorErrorNumber; + /** minor error number of the first error on the HDF5 library error stack. */ private final long minorErrorNumber; /** @@ -112,7 +114,7 @@ public class HDF5LibraryException extends HDF5Exception { return "special zero no error"; } else if (err_code == HDF5Constants.H5E_UNINITIALIZED) { - return "information is unitialized"; + return "information is uninitialized"; } else if (err_code == HDF5Constants.H5E_UNSUPPORTED) { return "feature is unsupported"; @@ -201,14 +203,14 @@ public class HDF5LibraryException extends HDF5Exception { else if (err_code == HDF5Constants.H5E_CANTRELEASE) { return "Can't release object"; } - else if (err_code == HDF5Constants.H5E_BADATOM) { - return "Can't find atom information"; + else if (err_code == HDF5Constants.H5E_BADID) { + return "Can't find ID information"; } else if (err_code == HDF5Constants.H5E_BADGROUP) { return "Can't find group information"; } else if (err_code == HDF5Constants.H5E_CANTREGISTER) { - return "Can't register new atom"; + return "Can't register new ID"; } else if (err_code == HDF5Constants.H5E_CANTINC) { return "Can't increment reference count"; diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5LowLevelIOException.java b/java/src/hdf/hdf5lib/exceptions/HDF5LowLevelIOException.java index 6d792c3..d61f4e9 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5LowLevelIOException.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5LowLevelIOException.java @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5MetaDataCacheException.java b/java/src/hdf/hdf5lib/exceptions/HDF5MetaDataCacheException.java index 02f2d33..3b64b15 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5MetaDataCacheException.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5MetaDataCacheException.java @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5ObjectHeaderException.java b/java/src/hdf/hdf5lib/exceptions/HDF5ObjectHeaderException.java index 2bb6861..b9f40f8 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5ObjectHeaderException.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5ObjectHeaderException.java @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5PropertyListInterfaceException.java b/java/src/hdf/hdf5lib/exceptions/HDF5PropertyListInterfaceException.java index b1baaad..d2a20e0 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5PropertyListInterfaceException.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5PropertyListInterfaceException.java @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5ReferenceException.java b/java/src/hdf/hdf5lib/exceptions/HDF5ReferenceException.java index ea4a89a..0701244 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5ReferenceException.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5ReferenceException.java @@ -6,13 +6,19 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package hdf.hdf5lib.exceptions; +/** + * The class HDF5LibraryException returns errors raised by the HDF5 library. + * <p> + * This sub-class represents HDF-5 major error code <b>H5E_REFERENCE</b> + */ + public class HDF5ReferenceException extends HDF5LibraryException { /** * Constructs an <code>HDF5ReferenceException</code> with no specified diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5ResourceUnavailableException.java b/java/src/hdf/hdf5lib/exceptions/HDF5ResourceUnavailableException.java index fc92578..ad052b5 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5ResourceUnavailableException.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5ResourceUnavailableException.java @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ diff --git a/java/src/hdf/hdf5lib/exceptions/HDF5SymbolTableException.java b/java/src/hdf/hdf5lib/exceptions/HDF5SymbolTableException.java index b90ce64..ba9150f 100644 --- a/java/src/hdf/hdf5lib/exceptions/HDF5SymbolTableException.java +++ b/java/src/hdf/hdf5lib/exceptions/HDF5SymbolTableException.java @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ diff --git a/java/src/hdf/hdf5lib/exceptions/package-info.java b/java/src/hdf/hdf5lib/exceptions/package-info.java new file mode 100644 index 0000000..8640ccb --- /dev/null +++ b/java/src/hdf/hdf5lib/exceptions/package-info.java @@ -0,0 +1,31 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://www.hdfgroup.org/licenses. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +/** + * <p> + * The package exceptions contains error classes for the Java HDF5 Interface. + * <p> + * There are two sub-classes of exceptions defined: + * <ol> + * <li> + * HDF5LibraryException -- errors raised the HDF5 library code + * <li> + * HDF5JavaException -- errors raised the HDF5 Java wrapper code + * </ol> + * <p> + * The HDF5LibraryException is the base class for the classes that represent specific error conditions. + * In particular, HDF5LibraryException has a sub-class for each major + * error code returned by the HDF5 library. + * + */ +package hdf.hdf5lib.exceptions;
\ No newline at end of file diff --git a/java/src/hdf/hdf5lib/package-info.java b/java/src/hdf/hdf5lib/package-info.java new file mode 100644 index 0000000..2863f5a --- /dev/null +++ b/java/src/hdf/hdf5lib/package-info.java @@ -0,0 +1,174 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://www.hdfgroup.org/licenses. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + + +/** + * This package is the Java interface for the HDF5 library. + * <p> + * This code is the called by Java programs to access the entry points of the HDF5 library. Each routine wraps a single + * HDF5 entry point, generally with the arguments and return codes analogous to the C interface. + * <p> + * For details of the HDF5 library, see the HDF5 Documentation at: + * <a href="http://hdfgroup.org/HDF5/">http://hdfgroup.org/HDF5/</a> + * <hr> + * <p> + * <b>Mapping of arguments for Java</b> + * + * <p> + * In general, arguments to the HDF Java API are straightforward translations from the 'C' API described in the HDF + * Reference Manual. + * + * <table border=1> + * <caption><b>HDF-5 C types to Java types</b> </caption> + * <tr> + * <td><b>HDF-5</b></td> + * <td><b>Java</b></td> + * </tr> + * <tr> + * <td>H5T_NATIVE_INT</td> + * <td>int, Integer</td> + * </tr> + * <tr> + * <td>H5T_NATIVE_SHORT</td> + * <td>short, Short</td> + * </tr> + * <tr> + * <td>H5T_NATIVE_FLOAT</td> + * <td>float, Float</td> + * </tr> + * <tr> + * <td>H5T_NATIVE_DOUBLE</td> + * <td>double, Double</td> + * </tr> + * <tr> + * <td>H5T_NATIVE_CHAR</td> + * <td>byte, Byte</td> + * </tr> + * <tr> + * <td>H5T_C_S1</td> + * <td>java.lang.String</td> + * </tr> + * <tr> + * <td>void * <BR> + * (i.e., pointer to `Any')</td> + * <td>Special -- see HDFArray</td> + * </tr> + * </table> + * <b>General Rules for Passing Arguments and Results</b> + * <p> + * In general, arguments passed <b>IN</b> to Java are the analogous basic types, as above. The exception is for arrays, + * which are discussed below. + * <p> + * The <i>return value</i> of Java methods is also the analogous type, as above. A major exception to that rule is that + * all HDF functions that return SUCCEED/FAIL are declared <i>boolean</i> in the Java version, rather than <i>int</i> as + * in the C. Functions that return a value or else FAIL are declared the equivalent to the C function. However, in most + * cases the Java method will raise an exception instead of returning an error code. + * See <a href="#ERRORS">Errors and Exceptions</a> below. + * <p> + * Java does not support pass by reference of arguments, so arguments that are returned through <b>OUT</b> parameters + * must be wrapped in an object or array. The Java API for HDF consistently wraps arguments in arrays. + * <p> + * For instance, a function that returns two integers is declared: + * + * <pre> + * h_err_t HDF5dummy( int *a1, int *a2) + * </pre> + * + * For the Java interface, this would be declared: + * + * <pre> + * public synchronized static native void HDF5dummy(int args[]); + * </pre> + * + * where <i>a1</i> is <i>args[0]</i> and <i>a2</i> is <i>args[1]</i>, and would be invoked: + * + * <pre> + * H5.HDF5dummy(a); + * </pre> + * + * <p> + * All the routines where this convention is used will have specific documentation of the details, given below. + * <p> + * <b>Arrays</b> + * <p> + * HDF5 needs to read and write multi-dimensional arrays of any number type (and records). The HDF5 API describes the + * layout of the source and destination, and the data for the array passed as a block of bytes, for instance, + * + * <pre> + * herr_t H5Dread(long fid, long filetype, long memtype, long memspace, void *data); + * </pre> + * + * <p> + * where ``void *'' means that the data may be any valid numeric type, and is a contiguous block of bytes that is the + * data for a multi-dimensional array. The other parameters describe the dimensions, rank, and datatype of the array on + * disk (source) and in memory (destination). + * <p> + * For Java, this ``ANY'' is a problem, as the type of data must always be declared. Furthermore, multidimensional + * arrays are definitely <i>not</i> laid out contiguously in memory. It would be infeasible to declare a separate + * routine for every combination of number type and dimensionality. For that reason, the + * <a href="./hdf.hdf5lib.HDFArray.html"><b>HDFArray</b></a> class is used to discover the type, shape, and size of the + * data array at run time, and to convert to and from a contiguous array of bytes in synchronized static native C order. + * <p> + * The upshot is that any Java array of numbers (either primitive or sub-classes of type <b>Number</b>) can be passed as + * an ``Object'', and the Java API will translate to and from the appropriate packed array of bytes needed by the C + * library. So the function above would be declared: + * + * <pre> + * public synchronized static native int H5Dread(long fid, long filetype, long memtype, long memspace, Object data); + * </pre> + * OPEN_IDS.addElement(id); + + * and the parameter <i>data</i> can be any multi-dimensional array of numbers, such as float[][], or int[][][], or + * Double[][]. + * <p> + * <b>HDF-5 Constants</b> + * <p> + * The HDF-5 API defines a set of constants and enumerated values. Most of these values are available to Java programs + * via the class <a href="./hdf.hdf5lib.HDF5Constants.html"> <b>HDF5Constants</b></a>. For example, the parameters for + * the h5open() call include two numeric values, <b><i>HDFConstants.H5F_ACC_RDWR</i></b> and + * <b><i>HDF5Constants.H5P_DEFAULT</i></b>. As would be expected, these numbers correspond to the C constants + * <b><i>H5F_ACC_RDWR</i></b> and <b><i>H5P_DEFAULT</i></b>. + * <p> + * The HDF-5 API defines a set of values that describe number types and sizes, such as "H5T_NATIVE_INT" and "hsize_t". + * These values are determined at run time by the HDF-5 C library. To support these parameters, the Java class + * <a href="./hdf.hdf5lib.HDF5CDataTypes.html"> <b>HDF5CDataTypes</b></a> looks up the values when initiated. The values + * can be accessed as public variables of the Java class, such as: + * + * <pre> + * long data_type = HDF5CDataTypes.JH5T_NATIVE_INT; + * </pre> + * + * The Java application uses both types of constants the same way, the only difference is that the + * <b><i>HDF5CDataTypes</i></b> may have different values on different platforms. + * <p> + * <b>Error handling and Exceptions</b> + * <p> + * The HDF5 error API (H5E) manages the behavior of the error stack in the HDF-5 library. This API is available from the + * JHI5. Errors are converted into Java exceptions. This is totally different from the C interface, but is very natural + * for Java programming. + * <p> + * The exceptions of the JHI5 are organized as sub-classes of the class + * <a href="./hdf.hdf5lib.exceptions.HDF5Exception.html"> <b>HDF5Exception</b></a>. There are two subclasses of + * <b>HDF5Exception</b>, <a href="./hdf.hdf5lib.exceptions.HDF5LibraryException.html"> <b>HDF5LibraryException</b></a> + * and <a href="./hdf.hdf5lib.exceptions.HDF5JavaException.html"> <b>HDF5JavaException</b></a>. The sub-classes of the + * former represent errors from the HDF-5 C library, while sub-classes of the latter represent errors in the JHI5 + * wrapper and support code. + * <p> + * The super-class <b><i>HDF5LibraryException</i></b> implements the method '<b><i>printStackTrace()</i></b>', which + * prints out the HDF-5 error stack, as described in the HDF-5 C API <i><b>H5Eprint()</b>.</i> This may be used by Java + * exception handlers to print out the HDF-5 error stack. + * <hr> + * + * <b>See also: <a href="http://hdfgroup.org/HDF5/"> http://hdfgroup.org/HDF5"</a></b> + **/ +package hdf.hdf5lib; diff --git a/java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java b/java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java index 20863dc..cf84532 100644 --- a/java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java +++ b/java/src/hdf/hdf5lib/structs/H5AC_cache_config_t.java @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -15,44 +14,276 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -//Information struct for H5Pget_mdc_config/H5Pset_mdc_config +/** + * Information struct for H5Pget_mdc_config/H5Pset_mdc_config + * + */ public class H5AC_cache_config_t implements Serializable{ private static final long serialVersionUID = -6748085696476149972L; - // general configuration fields: + // general configuration fields + /** + * version: Integer field containing the version number of this version + * of the H5AC_cache_config_t structure. Any instance of + * H5AC_cache_config_t passed to the cache must have a known + * version number, or an error will be flagged. + */ public int version; + /** + * rpt_fcn_enabled: Boolean field used to enable and disable the default + * reporting function. This function is invoked every time the + * automatic cache resize code is run, and reports on its activities. + * + * This is a debugging function, and should normally be turned off. + */ public boolean rpt_fcn_enabled; + /** + * open_trace_file: Boolean field indicating whether the trace_file_name + * field should be used to open a trace file for the cache. + * + * *** DEPRECATED *** Use H5Fstart/stop logging functions instead + */ public boolean open_trace_file; + /** + * close_trace_file: Boolean field indicating whether the current trace + * file (if any) should be closed. + * + * *** DEPRECATED *** Use H5Fstart/stop logging functions instead + */ public boolean close_trace_file; + /** + * trace_file_name: Full path of the trace file to be opened if the + * open_trace_file field is TRUE. + * + * *** DEPRECATED *** Use H5Fstart/stop logging functions instead + */ public String trace_file_name; + /** + * evictions_enabled: Boolean field used to either report the current + * evictions enabled status of the cache, or to set the cache's + * evictions enabled status. + */ public boolean evictions_enabled; + /** + * set_initial_size: Boolean flag indicating whether the size of the + * initial size of the cache is to be set to the value given in + * the initial_size field. If set_initial_size is FALSE, the + * initial_size field is ignored. + */ public boolean set_initial_size; + /** + * initial_size: If enabled, this field contain the size the cache is + * to be set to upon receipt of this structure. Needless to say, + * initial_size must lie in the closed interval [min_size, max_size]. + */ public long initial_size; + /** + * min_clean_fraction: double in the range 0 to 1 indicating the fraction + * of the cache that is to be kept clean. This field is only used + * in parallel mode. Typical values are 0.1 to 0.5. + */ public double min_clean_fraction; + /** + * max_size: Maximum size to which the cache can be adjusted. The + * supplied value must fall in the closed interval + * [MIN_MAX_CACHE_SIZE, MAX_MAX_CACHE_SIZE]. Also, max_size must + * be greater than or equal to min_size. + */ public long max_size; + /** + * min_size: Minimum size to which the cache can be adjusted. The + * supplied value must fall in the closed interval + * [H5C__MIN_MAX_CACHE_SIZE, H5C__MAX_MAX_CACHE_SIZE]. Also, min_size + * must be less than or equal to max_size. + */ public long min_size; + /** + * epoch_length: Number of accesses on the cache over which to collect + * hit rate stats before running the automatic cache resize code, + * if it is enabled. + */ public long epoch_length; - // size increase control fields: - public int incr_mode; // H5C_cache_incr_mode + // size increase control fields + /** + * incr_mode: Instance of the H5C_cache_incr_mode enumerated type whose + * value indicates how we determine whether the cache size should be + * increased. At present there are two possible values. + */ + public int incr_mode; + /** + * lower_hr_threshold: Lower hit rate threshold. If the increment mode + * (incr_mode) is H5C_incr__threshold and the hit rate drops below the + * value supplied in this field in an epoch, increment the cache size by + * size_increment. Note that cache size may not be incremented above + * max_size, and that the increment may be further restricted by the + * max_increment field if it is enabled. + */ public double lower_hr_threshold; + /** + * increment: Double containing the multiplier used to derive the new + * cache size from the old if a cache size increment is triggered. + * The increment must be greater than 1.0, and should not exceed 2.0. + */ public double increment; + /** + * apply_max_increment: Boolean flag indicating whether the max_increment + * field should be used to limit the maximum cache size increment. + */ public boolean apply_max_increment; + /** + * max_increment: If enabled by the apply_max_increment field described + * above, this field contains the maximum number of bytes by which the + * cache size can be increased in a single re-size. + */ public long max_increment; - public int flash_incr_mode; // H5C_cache_flash_incr_mode + /** + * flash_incr_mode: Instance of the H5C_cache_flash_incr_mode enumerated + * type whose value indicates whether and by which algorithm we should + * make flash increases in the size of the cache to accommodate insertion + * of large entries and large increases in the size of a single entry. + */ + public int flash_incr_mode; + /** + * flash_multiple: Double containing the multiple described above in the + * H5C_flash_incr__add_space section of the discussion of the + * flash_incr_mode section. This field is ignored unless flash_incr_mode + * is H5C_flash_incr__add_space. + */ public double flash_multiple; + /** + * flash_threshold: Double containing the factor by which current max cache + * size is multiplied to obtain the size threshold for the add_space flash + * increment algorithm. The field is ignored unless flash_incr_mode is + * H5C_flash_incr__add_space. + */ public double flash_threshold; - // size decrease control fields: - public int decr_mode; // H5C_cache_decr_mode + // size decrease control fields + /** + * decr_mode: Instance of the H5C_cache_decr_mode enumerated type whose + * value indicates how we determine whether the cache size should be + * decreased. At present there are four possibilities. + */ + public int decr_mode; + /** + * upper_hr_threshold: Upper hit rate threshold. The use of this field + * varies according to the current decr_mode. + */ public double upper_hr_threshold; + /** + * decrement: This field is only used when the decr_mode is + * H5C_decr__threshold. + */ public double decrement; + /** + * apply_max_decrement: Boolean flag used to determine whether decrements + * in cache size are to be limited by the max_decrement field. + */ public boolean apply_max_decrement; + /** + * max_decrement: Maximum number of bytes by which the cache size can be + * decreased in a single re-size. Note that decrements may also be + * restricted by the min_size of the cache, and (in age out modes) by + * the empty_reserve field. + */ public long max_decrement; + /** + * epochs_before_eviction: Integer field used in H5C_decr__age_out and + * H5C_decr__age_out_with_threshold decrement modes. + */ public int epochs_before_eviction; + /** + * apply_empty_reserve: Boolean field controlling whether the empty_reserve + * field is to be used in computing the new cache size when the + * decr_mode is H5C_decr__age_out or H5C_decr__age_out_with_threshold. + */ public boolean apply_empty_reserve; + /** + * empty_reserve: To avoid a constant racheting down of cache size by small + * amounts in the H5C_decr__age_out and H5C_decr__age_out_with_threshold + * modes, this field allows one to require that any cache size + * reductions leave the specified fraction of unused space in the cache. + */ public double empty_reserve; - // parallel configuration fields: + // parallel configuration fields + /** + * dirty_bytes_threshold: Threshold of dirty byte creation used to + * synchronize updates between caches. + */ public long dirty_bytes_threshold; + /** + * metadata_write_strategy: Integer field containing a code indicating the + * desired metadata write strategy. + */ public int metadata_write_strategy; + /** H5AC_cache_config_t is a public structure intended for use in public APIs. + * At least in its initial incarnation, it is basically a copy of struct + * H5C_auto_size_ctl_t, minus the report_fcn field, and plus the + * dirty_bytes_threshold field. + * + * @param version: Integer field containing the version number of this version + * @param rpt_fcn_enabled: Boolean field used to enable and disable the default reporting function. + * @param open_trace_file: Boolean field indicating whether the trace_file_name + * field should be used to open a trace file for the cache. + * @param close_trace_file: Boolean field indicating whether the current trace + * file (if any) should be closed. + * @param trace_file_name: Full path of the trace file to be opened if the + * open_trace_file field is TRUE. + * @param evictions_enabled: Boolean field used to either report or set the current + * evictions enabled status of the cache. + * @param set_initial_size: Boolean flag indicating whether the size of the + * initial size of the cache is to be set to the value given in + * the initial_size field. + * @param initial_size: If enabled, this field contain the size the cache is + * to be set to upon receipt of this structure. + * @param min_clean_fraction: double in the range 0 to 1 indicating the fraction + * of the cache that is to be kept clean. + * @param max_size: Maximum size to which the cache can be adjusted. + * @param min_size: Minimum size to which the cache can be adjusted. + * @param epoch_length: Number of accesses on the cache over which to collect + * hit rate stats before running the automatic cache resize code. + * @param incr_mode: Instance of the H5C_cache_incr_mode enumerated type. + * @param lower_hr_threshold: Lower hit rate threshold. + * @param increment: Double containing the multiplier used to derive the new + * cache size from the old if a cache size increment is triggered. + * @param apply_max_increment: Boolean flag indicating whether the max_increment + * field should be used to limit the maximum cache size increment. + * @param max_increment: If enabled by the apply_max_increment field described + * above, this field contains the maximum number of bytes by which the + * cache size can be increased in a single re-size. + * @param flash_incr_mode: Instance of the H5C_cache_flash_incr_mode enumerated + * type whose value indicates whether and by which algorithm we should + * make flash increases in the size of the cache to accommodate insertion + * of large entries and large increases in the size of a single entry. + * @param flash_multiple: Double containing the multiple described above in the + * H5C_flash_incr__add_space section of the discussion of the + * flash_incr_mode section. + * @param flash_threshold: Double containing the factor by which current max cache + * size is multiplied to obtain the size threshold for the add_space flash + * increment algorithm. + * @param decr_mode: Instance of the H5C_cache_decr_mode enumerated type whose + * value indicates how we determine whether the cache size should be + * decreased. + * @param upper_hr_threshold: Upper hit rate threshold. The use of this field + * varies according to the current decr_mode. + * @param decrement: This field is only used when the decr_mode is + * H5C_decr__threshold. + * @param apply_max_decrement: Boolean flag used to determine whether decrements + * in cache size are to be limited by the max_decrement field. + * @param max_decrement: Maximum number of bytes by which the cache size can be + * decreased in a single re-size. + * @param epochs_before_eviction: Integer field used in H5C_decr__age_out and + * H5C_decr__age_out_with_threshold decrement modes. + * @param apply_empty_reserve: Boolean field controlling whether the empty_reserve + * field is to be used in computing the new cache size when the + * decr_mode is H5C_decr__age_out or H5C_decr__age_out_with_threshold. + * @param empty_reserve: To avoid a constant racheting down of cache size by small + * amounts in the H5C_decr__age_out and H5C_decr__age_out_with_threshold + * modes. + * @param dirty_bytes_threshold: Threshold of dirty byte creation used to + * synchronize updates between caches. + * @param metadata_write_strategy: Integer field containing a code indicating the + * desired metadata write strategy. + */ public H5AC_cache_config_t (int version, boolean rpt_fcn_enabled, boolean open_trace_file, boolean close_trace_file, String trace_file_name, boolean evictions_enabled, boolean set_initial_size, long initial_size, double min_clean_fraction, long max_size, diff --git a/java/src/hdf/hdf5lib/structs/H5A_info_t.java b/java/src/hdf/hdf5lib/structs/H5A_info_t.java index a46a495..f2c10f0 100644 --- a/java/src/hdf/hdf5lib/structs/H5A_info_t.java +++ b/java/src/hdf/hdf5lib/structs/H5A_info_t.java @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -15,13 +14,20 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -//Information struct for Attribute (For H5Aget_info/H5Aget_info_by_idx/H5Aget_info_by_name) +/** + * Information struct for Attribute (For H5Aget_info/H5Aget_info_by_idx/H5Aget_info_by_name) + * + */ public class H5A_info_t implements Serializable{ private static final long serialVersionUID = 2791443594041667613L; - public boolean corder_valid; // Indicate if creation order is valid - public long corder; // Creation order of attribute - public int cset; // Character set of attribute name - public long data_size; // Size of raw data + /** Indicate if creation order is valid */ + public boolean corder_valid; + /** Creation order of attribute */ + public long corder; + /** Character set of attribute name */ + public int cset; + /** Size of raw data */ + public long data_size; H5A_info_t(boolean corder_valid, long corder, int cset, long data_size) { this.corder_valid = corder_valid; diff --git a/java/src/hdf/hdf5lib/structs/H5E_error2_t.java b/java/src/hdf/hdf5lib/structs/H5E_error2_t.java index 257ad05..5981fc7 100644 --- a/java/src/hdf/hdf5lib/structs/H5E_error2_t.java +++ b/java/src/hdf/hdf5lib/structs/H5E_error2_t.java @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -15,17 +14,26 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -//Information struct for Attribute (For H5Ewalk) +/** + * Information struct for Attribute (For H5Ewalk) + * + */ public class H5E_error2_t implements Serializable{ private static final long serialVersionUID = 279144359041667613L; - - public long cls_id; //class ID - public long maj_num; //major error ID - public long min_num; //minor error number - public int line; //line in file where error occurs - public String func_name; //function in which error occurred - public String file_name; //file in which error occurred - public String desc; //optional supplied description + /** class ID */ + public long cls_id; + /** major error ID */ + public long maj_num; + /** minor error number */ + public long min_num; + /** line in file where error occurs */ + public int line; + /** function in which error occurred */ + public String func_name; + /** file in which error occurred */ + public String file_name; + /** optional supplied description */ + public String desc; H5E_error2_t(long cls_id, long maj_num, long min_num, int line, String func_name, String file_name, String desc) { this.cls_id = cls_id; diff --git a/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java b/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java index 9fcff2e..95a9254 100644 --- a/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java +++ b/java/src/hdf/hdf5lib/structs/H5FD_hdfs_fapl_t.java @@ -1,22 +1,21 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Read-Only HDFS Virtual File Driver (VFD) * - * Copyright (c) 2018, The HDF Group. * + * Copyright by The HDF Group. * * * * All rights reserved. * * * - * NOTICE: * - * All information contained herein is, and remains, the property of The HDF * - * Group. The intellectual and technical concepts contained herein are * - * proprietary to The HDF Group. Dissemination of this information or * - * reproduction of this material is strictly forbidden unless prior written * - * permission is obtained from The HDF Group. * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://www.hdfgroup.org/licenses. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package hdf.hdf5lib.structs; import java.io.Serializable; -/* +/** * Java representation of the HDFS VFD file access property list (fapl) * structure. * @@ -26,15 +25,31 @@ import java.io.Serializable; public class H5FD_hdfs_fapl_t implements Serializable { private static final long serialVersionUID = 2072473407027648309L; + /** Version number of the H5FD_hdfs_fapl_t structure. */ private int version; + /** Name of "Name Node" to access as the HDFS server. */ private String namenode_name; + /** Port number to use to connect with Name Node. */ private int namenode_port; + /** Username to use when accessing file. */ private String user_name; + /** Path to the location of the Kerberos authentication cache. */ private String kerberos_ticket_cache; + /** Size (in bytes) of the file read stream buffer. */ private int stream_buffer_size; - /* + /** * Create a fapl_t structure with the specified components. + * @param namenode_name + * Name of "Name Node" to access as the HDFS server. + * @param namenode_port + * Port number to use to connect with Name Node. + * @param user_name + * Username to use when accessing file. + * @param kerberos_ticket_cache + * Path to the location of the Kerberos authentication cache. + * @param stream_buffer_size + * Size (in bytes) of the file read stream buffer. */ public H5FD_hdfs_fapl_t( String namenode_name, diff --git a/java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java b/java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java index a899e10..ad02979 100644 --- a/java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java +++ b/java/src/hdf/hdf5lib/structs/H5FD_ros3_fapl_t.java @@ -1,22 +1,21 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * - * Read-Only S3 Virtual File Driver (VFD) * - * Copyright (c) 2017-2018, The HDF Group. * + * Copyright by The HDF Group. * * * * All rights reserved. * * * - * NOTICE: * - * All information contained herein is, and remains, the property of The HDF * - * Group. The intellectual and technical concepts contained herein are * - * proprietary to The HDF Group. Dissemination of this information or * - * reproduction of this material is strictly forbidden unless prior written * - * permission is obtained from The HDF Group. * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://www.hdfgroup.org/licenses. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ package hdf.hdf5lib.structs; import java.io.Serializable; -/* +/** * Java representation of the ROS3 VFD file access property list (fapl) * structure. * @@ -46,10 +45,15 @@ import java.io.Serializable; public class H5FD_ros3_fapl_t implements Serializable { private static final long serialVersionUID = 8985533001471224030L; + /** Version number of the H5FD_ros3_fapl_t structure */ private int version; + /** Flag TRUE or FALSE whether or not requests are to be authenticated with the AWS4 algorithm. */ private boolean authenticate; + /** region "aws region" for authenticating request */ private String aws_region; + /** id "secret id" or "access id" for authenticating request */ private String secret_id; + /** key "secret key" or "access key" for authenticating request */ private String secret_key; /** diff --git a/java/src/hdf/hdf5lib/structs/H5F_info2_t.java b/java/src/hdf/hdf5lib/structs/H5F_info2_t.java index 4664b5b..78e6d6c 100644 --- a/java/src/hdf/hdf5lib/structs/H5F_info2_t.java +++ b/java/src/hdf/hdf5lib/structs/H5F_info2_t.java @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -15,19 +14,43 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -//Information struct for object (for H5Fget_info) +/** + * Information struct for object (for H5Fget_info) + * + */ public class H5F_info2_t implements Serializable{ private static final long serialVersionUID = 4691681162544054518L; - public int super_version; // Superblock version # - public long super_size; // Superblock size - public long super_ext_size; // Superblock extension size - public int free_version; // Version # of file free space management - public long free_meta_size; // Free space manager metadata size - public long free_tot_space; // Amount of free space in the file - public int sohm_version; // Version # of shared object header info - public long sohm_hdr_size; // Shared object header message header size - public H5_ih_info_t sohm_msgs_info; // Shared object header message index & heap size + /** Superblock version number */ + public int super_version; + /** Superblock size */ + public long super_size; + /** Superblock extension size */ + public long super_ext_size; + /** Version number of file free space management */ + public int free_version; + /** Free space manager metadata size */ + public long free_meta_size; + /** Amount of free space in the file */ + public long free_tot_space; + /** Version number of shared object header info */ + public int sohm_version; + /** Shared object header message header size */ + public long sohm_hdr_size; + /** Shared object header message index and heap size */ + public H5_ih_info_t sohm_msgs_info; + /** + * Constructor for current "global" information about file + * @param super_version: Superblock version number + * @param super_size: Superblock size + * @param super_ext_size: Superblock extension size + * @param free_version: Version number of file free space management + * @param free_meta_size: Free space manager metadata size + * @param free_tot_space: Amount of free space in the file + * @param sohm_version: Version number of shared object header info + * @param sohm_hdr_size: Shared object header message header size + * @param sohm_msgs_info: Shared object header message index and heap size + */ public H5F_info2_t (int super_version, long super_size, long super_ext_size, int free_version, long free_meta_size, long free_tot_space, int sohm_version, long sohm_hdr_size, H5_ih_info_t sohm_msgs_info) diff --git a/java/src/hdf/hdf5lib/structs/H5G_info_t.java b/java/src/hdf/hdf5lib/structs/H5G_info_t.java index 56c876e..e79f859 100644 --- a/java/src/hdf/hdf5lib/structs/H5G_info_t.java +++ b/java/src/hdf/hdf5lib/structs/H5G_info_t.java @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -15,11 +14,18 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -//Information struct for group (for H5Gget_info/H5Gget_info_by_name/H5Gget_info_by_idx) +/** + * Information struct for group (for H5Gget_info/H5Gget_info_by_name/H5Gget_info_by_idx) + * + */ public class H5G_info_t implements Serializable{ private static final long serialVersionUID = -3746463015312132912L; - public int storage_type; // Type of storage for links in group - public long nlinks; // Number of links in group - public long max_corder; // Current max. creation order value for group - public boolean mounted; // Whether group has a file mounted on it + /** Type of storage for links in group */ + public int storage_type; + /** Number of links in group */ + public long nlinks; + /** Current max. creation order value for group */ + public long max_corder; + /** Whether group has a file mounted on it */ + public boolean mounted; } diff --git a/java/src/hdf/hdf5lib/structs/H5L_info_t.java b/java/src/hdf/hdf5lib/structs/H5L_info_t.java index 3bbb189..a3011c0 100644 --- a/java/src/hdf/hdf5lib/structs/H5L_info_t.java +++ b/java/src/hdf/hdf5lib/structs/H5L_info_t.java @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -15,22 +14,48 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -//Information struct for link (for H5Lget_info/H5Lget_info_by_idx) -public class H5L_info_t implements Serializable{ +import hdf.hdf5lib.HDF5Constants; + +/** + * Information struct for link (for H5Lget_info/H5Lget_info_by_idx) + * + */ +public class H5L_info_t implements Serializable { private static final long serialVersionUID = -4754320605310155033L; - public int type; - public boolean corder_valid; - public long corder; - public int cset; - public long address_val_size; + /** Type of link */ + public int type; + /** Indicate if creation order is valid */ + public boolean corder_valid; + /** Creation order */ + public long corder; + /** Character set of link name */ + public int cset; + /** Character set of link name */ + public H5O_token_t token; + /** Size of a soft link or user-defined link value */ + public long val_size; + + /** Constructor for using object token portion of C union */ + H5L_info_t (int type, boolean corder_valid, long corder, + int cset, H5O_token_t token) + { + this.type = type; + this.corder_valid = corder_valid; + this.corder = corder; + this.cset = cset; + this.token = token; + this.val_size = -1; + } + /** Constructor for using val_size portion of C union */ H5L_info_t (int type, boolean corder_valid, long corder, - int cset, long address_val_size) + int cset, long val_size) { this.type = type; this.corder_valid = corder_valid; this.corder = corder; this.cset = cset; - this.address_val_size = address_val_size; + this.token = HDF5Constants.H5O_TOKEN_UNDEF; + this.val_size = val_size; } } diff --git a/java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java b/java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java index a39c1ed..2475dd9 100644 --- a/java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java +++ b/java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -15,19 +14,32 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -// Information struct for object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx) -public class H5O_hdr_info_t implements Serializable{ +/** + * Information struct for object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx) + * + */ +public class H5O_hdr_info_t implements Serializable { private static final long serialVersionUID = 7883826382952577189L; - public int version; /* Version number of header format in file */ - public int nmesgs; /* Number of object header messages */ - public int nchunks; /* Number of object header chunks */ - public int flags; /* Object header status flags */ - public long space_total; /* Total space for storing object header in file */ - public long space_meta; /* Space within header for object header metadata information */ - public long space_mesg; /* Space within header for actual message information */ - public long space_free; /* Free space within object header */ - public long mesg_present; /* Flags to indicate presence of message type in header */ - public long mesg_shared; /* Flags to indicate message type is shared in header */ + /** Version number of header format in file */ + public int version; + /** Number of object header messages */ + public int nmesgs; + /** Number of object header chunks */ + public int nchunks; + /** Object header status flags */ + public int flags; + /** Total space for storing object header in file */ + public long space_total; + /** Space within header for object header metadata information */ + public long space_meta; + /** Space within header for actual message information */ + public long space_mesg; + /** Free space within object header */ + public long space_free; + /** Flags to indicate presence of message type in header */ + public long mesg_present; + /** Flags to indicate message type is shared in header */ + public long mesg_shared; H5O_hdr_info_t (int version, int nmesgs, int nchunks, int flags, long space_total, long space_meta, long space_mesg, long space_free, @@ -44,4 +56,38 @@ public class H5O_hdr_info_t implements Serializable{ this.mesg_present = mesg_present; this.mesg_shared = mesg_shared; } + + @Override + public boolean equals(Object o) { + if (this == o) + return true; + + if (!(o instanceof H5O_hdr_info_t)) + return false; + + H5O_hdr_info_t info = (H5O_hdr_info_t) o; + + if (this.version != info.version) + return false; + if (this.nmesgs != info.nmesgs) + return false; + if (this.nchunks != info.nchunks) + return false; + if (this.flags != info.flags) + return false; + if (this.space_total != info.space_total) + return false; + if (this.space_meta != info.space_meta) + return false; + if (this.space_mesg != info.space_mesg) + return false; + if (this.space_free != info.space_free) + return false; + if (this.mesg_present != info.mesg_present) + return false; + if (this.mesg_shared != info.mesg_shared) + return false; + + return true; + } } diff --git a/java/src/hdf/hdf5lib/structs/H5O_info_t.java b/java/src/hdf/hdf5lib/structs/H5O_info_t.java index ac32f6a..d2208d2 100644 --- a/java/src/hdf/hdf5lib/structs/H5O_info_t.java +++ b/java/src/hdf/hdf5lib/structs/H5O_info_t.java @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -15,38 +14,54 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -//Information struct for object (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx) -public class H5O_info_t implements Serializable{ +/** + * Information struct for object (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx) + * + */ +public class H5O_info_t implements Serializable { private static final long serialVersionUID = 4691681163544054518L; - public long fileno; /* File number that object is located in */ - public long addr; /* Object address in file */ - public int type; /* Basic object type (group, dataset, etc.) */ - public int rc; /* Reference count of object */ - public long atime; /* Access time */ - public long mtime; /* Modification time */ - public long ctime; /* Change time */ - public long btime; /* Birth time */ - public long num_attrs; /* # of attributes attached to object */ - public H5O_hdr_info_t hdr; /* Object header information */ - /* Extra metadata storage for obj & attributes */ - public H5_ih_info_t meta_size_obj; /* v1/v2 B-tree & local/fractal heap for groups, B-tree for chunked datasets */ - public H5_ih_info_t meta_size_attr; /* v2 B-tree & heap for attributes */ + /** File number that object is located in */ + public long fileno; + /** Object token in file */ + public H5O_token_t token; + /** Basic object type (group, dataset, etc.) */ + public int type; + /** Reference count of object */ + public int rc; + /** Access time */ + public long atime; + /** Modification time */ + public long mtime; + /** Change time */ + public long ctime; + /** Birth time */ + public long btime; + /** Number of attributes attached to object */ + public long num_attrs; - public H5O_info_t (long fileno, long addr, int type, - int rc, long num_attrs, long atime, long mtime, long ctime, long btime, - H5O_hdr_info_t hdr, H5_ih_info_t meta_size_obj, H5_ih_info_t meta_size_attr) + /** Constructor for data model information struct for objects + * + * @param fileno: File number that object is located in + * @param token: Object token in file + * @param type: Basic object type + * @param rc: Reference count of object + * @param atime: Access time + * @param mtime: Modification time + * @param ctime: Change time + * @param btime: Birth time + * @param num_attrs: Number of attributes attached to object + */ + public H5O_info_t (long fileno, H5O_token_t token, int type, + int rc, long atime, long mtime, long ctime, long btime, long num_attrs) { this.fileno = fileno; - this.addr = addr; + this.token = token; this.type = type; this.rc = rc; - this.num_attrs = num_attrs; this.atime = atime; this.mtime = mtime; this.ctime = ctime; this.btime = btime; - this.hdr = hdr; - this.meta_size_obj = meta_size_obj; - this.meta_size_attr = meta_size_attr; + this.num_attrs = num_attrs; } } diff --git a/java/src/hdf/hdf5lib/structs/H5O_native_info_t.java b/java/src/hdf/hdf5lib/structs/H5O_native_info_t.java new file mode 100644 index 0000000..70e5231 --- /dev/null +++ b/java/src/hdf/hdf5lib/structs/H5O_native_info_t.java @@ -0,0 +1,56 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://www.hdfgroup.org/licenses. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +package hdf.hdf5lib.structs; + +import java.io.Serializable; + +/** + * Information struct for native HDF5 object info, such as object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx). + * + */ +public class H5O_native_info_t implements Serializable { + private static final long serialVersionUID = 7883826382952577189L; + /** Object header information */ + public H5O_hdr_info_t hdr_info; + + /* Extra metadata storage for obj & attributes */ + /** v1/v2 B-tree and local/fractal heap for groups, B-tree for chunked datasets */ + public H5_ih_info_t obj_info; + /** v2 B-tree and heap for attributes */ + public H5_ih_info_t attr_info; + + H5O_native_info_t (H5O_hdr_info_t oheader_info, H5_ih_info_t obj_info, H5_ih_info_t attr_info) + { + this.hdr_info = oheader_info; + this.obj_info = obj_info; + this.attr_info = attr_info; + } + + @Override + public boolean equals(Object o) { + if (this == o) + return true; + + if (!(o instanceof H5O_native_info_t)) + return false; + + H5O_native_info_t info = (H5O_native_info_t) o; + + if (!this.hdr_info.equals(info.hdr_info) + || !this.obj_info.equals(info.obj_info) + || !this.attr_info.equals(info.attr_info)) + return false; + + return true; + } +} diff --git a/java/src/hdf/hdf5lib/structs/H5O_token_t.java b/java/src/hdf/hdf5lib/structs/H5O_token_t.java new file mode 100644 index 0000000..f0bb978 --- /dev/null +++ b/java/src/hdf/hdf5lib/structs/H5O_token_t.java @@ -0,0 +1,58 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://www.hdfgroup.org/licenses. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +package hdf.hdf5lib.structs; + +import java.io.Serializable; +import java.util.Arrays; + +import hdf.hdf5lib.HDF5Constants; + +/** + * Object token, which is a unique and permanent identifier, for an HDF5 object within a container. + * + */ +public class H5O_token_t implements Serializable { + private static final long serialVersionUID = -4754320605310155032L; + /** + * Tokens are unique and permanent identifiers that are + * used to reference HDF5 objects in a container. + * Use basic byte array to store the dat + */ + public byte[] data; + + H5O_token_t (byte[] data) { + this.data = data; + } + + /** + * Check if token data is undefined + * + * @return true if token data is undefined + */ + public boolean isUndefined() { + return this.equals(HDF5Constants.H5O_TOKEN_UNDEF); + } + + @Override + public boolean equals(Object o) { + if (this == o) + return true; + + if (!(o instanceof H5O_token_t)) + return false; + + H5O_token_t token = (H5O_token_t) o; + + return Arrays.equals(this.data, token.data); + } +} diff --git a/java/src/hdf/hdf5lib/structs/H5_ih_info_t.java b/java/src/hdf/hdf5lib/structs/H5_ih_info_t.java index ea36d85..0c6111b 100644 --- a/java/src/hdf/hdf5lib/structs/H5_ih_info_t.java +++ b/java/src/hdf/hdf5lib/structs/H5_ih_info_t.java @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -15,10 +14,15 @@ package hdf.hdf5lib.structs; import java.io.Serializable; -//Information struct for group (for H5Gget_info/H5Gget_info_by_name/H5Gget_info_by_idx) +/** + * Information struct for group (for H5Gget_info/H5Gget_info_by_name/H5Gget_info_by_idx) + * + */ public class H5_ih_info_t implements Serializable { private static final long serialVersionUID = -142238015615462707L; - public long index_size; /* btree and/or list */ + /** btree and/or list size of index */ + public long index_size; + /** btree and/or list size of hp */ public long heap_size; H5_ih_info_t (long index_size, long heap_size) @@ -26,4 +30,22 @@ public class H5_ih_info_t implements Serializable { this.index_size = index_size; this.heap_size = heap_size; } + + @Override + public boolean equals(Object o) { + if (this == o) + return true; + + if (!(o instanceof H5_ih_info_t)) + return false; + + H5_ih_info_t info = (H5_ih_info_t) o; + + if (this.index_size != info.index_size) + return false; + if (this.heap_size != info.heap_size) + return false; + + return true; + } } diff --git a/java/src/hdf/hdf5lib/structs/package-info.java b/java/src/hdf/hdf5lib/structs/package-info.java new file mode 100644 index 0000000..8a9d97d --- /dev/null +++ b/java/src/hdf/hdf5lib/structs/package-info.java @@ -0,0 +1,17 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://www.hdfgroup.org/licenses. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +/** All structure definitions define java equivalents of the C structures needed + * by the C API calls. See the C API for information about the structures. + */ +package hdf.hdf5lib.structs; diff --git a/java/src/hdf/overview.html b/java/src/hdf/overview.html index e3a032b..f6a34fc 100644 --- a/java/src/hdf/overview.html +++ b/java/src/hdf/overview.html @@ -7,7 +7,7 @@ The <b>Java HD5 Interface (JHI5)</b> is a Java package (<a href="../../hdf-java-html/javadocs/hdf/hdf5lib/package-summary.html">hdf.hdf5lib</a>) that ``wraps around'' the HDF5 library. <p>There are a large number of functions in the HDF5 -library (version 1.10). Some of the functions are not supported in JHI5. Most +library (version 1.13). Some of the functions are not supported in JHI5. Most of the unsupported functions have C function pointers, which is not currently implemented in JHI5.</p> diff --git a/java/src/jni/CMakeLists.txt b/java/src/jni/CMakeLists.txt index a05921b..ab306ef 100644 --- a/java/src/jni/CMakeLists.txt +++ b/java/src/jni/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required (VERSION 3.10) +cmake_minimum_required (VERSION 3.12) project (HDF5_JAVA_JNI C) set (HDF5_JAVA_JNI_CSRCS @@ -45,6 +45,7 @@ set (HDF5_JAVA_JNI_CHDRS ${HDF5_JAVA_JNI_SOURCE_DIR}/h5fImp.h ${HDF5_JAVA_JNI_SOURCE_DIR}/h5gImp.h ${HDF5_JAVA_JNI_SOURCE_DIR}/h5iImp.h + ${HDF5_JAVA_JNI_SOURCE_DIR}/h5Imp.h ${HDF5_JAVA_JNI_SOURCE_DIR}/h5jni.h ${HDF5_JAVA_JNI_SOURCE_DIR}/h5lImp.h ${HDF5_JAVA_JNI_SOURCE_DIR}/h5oImp.h @@ -77,8 +78,9 @@ set (CMAKE_INCLUDE_CURRENT_DIR_IN_INTERFACE ON) ########### JNI libraries always must be built shared ############### add_library (${HDF5_JAVA_JNI_LIB_TARGET} SHARED ${HDF5_JAVA_JNI_CSRCS} ${HDF5_JAVA_JNI_CHDRS}) target_include_directories (${HDF5_JAVA_JNI_LIB_TARGET} - PRIVATE "${HDF5_BINARY_DIR};${HDF5_JAVA_JNI_SOURCE_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>" + PRIVATE "${HDF5_SRC_DIR};${HDF5_SRC_BINARY_DIR};${HDF5_JAVA_JNI_SOURCE_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>" ) +target_compile_options(${HDF5_JAVA_JNI_LIB_TARGET} PRIVATE "${HDF5_CMAKE_C_FLAGS}") TARGET_C_PROPERTIES (${HDF5_JAVA_JNI_LIB_TARGET} SHARED) target_link_libraries (${HDF5_JAVA_JNI_LIB_TARGET} PUBLIC ${HDF5_LIBSH_TARGET}) set_target_properties (${HDF5_JAVA_JNI_LIB_TARGET} PROPERTIES FOLDER libraries/jni) @@ -86,6 +88,13 @@ SET_GLOBAL_VARIABLE (HDF5_LIBRARIES_TO_EXPORT "${HDF5_LIBRARIES_TO_EXPORT};${HDF H5_SET_LIB_OPTIONS (${HDF5_JAVA_JNI_LIB_TARGET} ${HDF5_JAVA_JNI_LIB_NAME} SHARED "JAVA") #----------------------------------------------------------------------------- +# Add Target to clang-format +#----------------------------------------------------------------------------- +if (HDF5_ENABLE_FORMATTERS) + clang_format (HDF5_JNI_SRC_FORMAT ${HDF5_JAVA_JNI_LIB_TARGET}) +endif () + +#----------------------------------------------------------------------------- # Add Target(s) to CMake Install for import into other projects #----------------------------------------------------------------------------- if (HDF5_EXPORTED_TARGETS) diff --git a/java/src/jni/Makefile.am b/java/src/jni/Makefile.am index 1ec9b94..bf086d2 100644 --- a/java/src/jni/Makefile.am +++ b/java/src/jni/Makefile.am @@ -1,12 +1,11 @@ # # Copyright by The HDF Group. -# Copyright by the Board of Trustees of the University of Illinois. # All rights reserved. # # This file is part of HDF5. The full HDF5 copyright notice, including # terms governing use, modification, and redistribution, is contained in # the COPYING file, which can be found at the root of the source code -# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. +# distribution tree, or in https://www.hdfgroup.org/licenses. # If you do not have access to either file, you may request a copy from # help@hdfgroup.org. ## diff --git a/java/src/jni/exceptionImp.c b/java/src/jni/exceptionImp.c index 0faa0cc..3ccb6ef 100644 --- a/java/src/jni/exceptionImp.c +++ b/java/src/jni/exceptionImp.c @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -21,7 +21,6 @@ extern "C" { #endif /* __cplusplus */ - /***********/ /* Headers */ /***********/ @@ -33,9 +32,8 @@ extern "C" { #include "h5jni.h" #include "exceptionImp.h" -extern H5E_auto2_t efunc; -extern void *edata; - +extern H5E_auto2_t efunc; +extern void * edata; /*******************/ /* Local Variables */ @@ -47,13 +45,13 @@ extern void *edata; * minor error numbers. */ typedef struct H5E_major_mesg_t { - hid_t error_code; - const char *str; + hid_t error_code; + const char *str; } H5E_major_mesg_t; typedef struct H5E_minor_mesg_t { - hid_t error_code; - const char *str; + hid_t error_code; + const char *str; } H5E_minor_mesg_t; /* major and minor error numbers */ @@ -66,42 +64,41 @@ typedef struct H5E_num_t { /* Local Macros */ /********************/ -#define THROWEXCEPTION(className, args) \ -{ \ - jmethodID jm; \ - jclass jc; \ - jobject ex; \ - \ - if (NULL == (jc = ENVPTR->FindClass(ENVONLY, (className)))) \ - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); \ - \ - if (NULL == (jm = ENVPTR->GetMethodID(ENVONLY, jc, "<init>", "(Ljava/lang/String;)V"))) { \ - HDprintf("THROWEXCEPTION FATAL ERROR: GetMethodID failed\n"); \ - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); \ - } \ - \ - if (NULL == (ex = ENVPTR->NewObjectA(ENVONLY, jc, jm, (jvalue *)(args)))) { \ - HDprintf("THROWEXCEPTION FATAL ERROR: Class %s: Creation failed\n", (className)); \ - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); \ - } \ - \ - if (ENVPTR->Throw(ENVONLY, (jthrowable)ex) < 0) { \ - HDprintf("THROWEXCEPTION FATAL ERROR: Class %s: Throw failed\n", (className)); \ - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); \ - } \ -} +#define THROWEXCEPTION(className, args) \ + { \ + jmethodID jm; \ + jclass jc; \ + jobject ex; \ + \ + if (NULL == (jc = ENVPTR->FindClass(ENVONLY, (className)))) \ + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); \ + \ + if (NULL == (jm = ENVPTR->GetMethodID(ENVONLY, jc, "<init>", "(Ljava/lang/String;)V"))) { \ + HDprintf("THROWEXCEPTION FATAL ERROR: GetMethodID failed\n"); \ + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); \ + } \ + \ + if (NULL == (ex = ENVPTR->NewObjectA(ENVONLY, jc, jm, (jvalue *)(args)))) { \ + HDprintf("THROWEXCEPTION FATAL ERROR: Class %s: Creation failed\n", (className)); \ + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); \ + } \ + \ + if (ENVPTR->Throw(ENVONLY, (jthrowable)ex) < 0) { \ + HDprintf("THROWEXCEPTION FATAL ERROR: Class %s: Throw failed\n", (className)); \ + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); \ + } \ + } /********************/ /* Local Prototypes */ /********************/ static const char *defineHDF5LibraryException(hid_t maj_num); -static jboolean H5JNIErrorClass(JNIEnv *env, const char *message, const char *className); +static jboolean H5JNIErrorClass(JNIEnv *env, const char *message, const char *className); /* get the major and minor error numbers on the top of the error stack */ static herr_t -walk_error_callback - (unsigned n, const H5E_error2_t *err_desc, void *_err_nums) +walk_error_callback(unsigned n, const H5E_error2_t *err_desc, void *_err_nums) { H5E_num_t *err_nums = (H5E_num_t *)_err_nums; @@ -122,8 +119,7 @@ walk_error_callback * */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5error_1off - (JNIEnv *env, jclass clss) +Java_hdf_hdf5lib_H5_H5error_1off(JNIEnv *env, jclass clss) { UNUSED(env); UNUSED(clss); @@ -144,8 +140,7 @@ Java_hdf_hdf5lib_H5_H5error_1off * */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5error_1on - (JNIEnv *env, jclass clss) +Java_hdf_hdf5lib_H5_H5error_1on(JNIEnv *env, jclass clss) { UNUSED(env); UNUSED(clss); @@ -161,11 +156,10 @@ Java_hdf_hdf5lib_H5_H5error_1on * Call the HDF-5 library to print the HDF-5 error stack to 'file_name'. */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_exceptions_HDF5LibraryException_printStackTrace0 - (JNIEnv *env, jobject obj, jstring file_name) +Java_hdf_hdf5lib_exceptions_HDF5LibraryException_printStackTrace0(JNIEnv *env, jobject obj, jstring file_name) { - FILE *stream = NULL; - const char *file = NULL; + FILE * stream = NULL; + const char *file = NULL; UNUSED(obj); @@ -196,8 +190,7 @@ done: * Extract the HDF-5 major error number from the HDF-5 error stack. */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_exceptions_HDF5LibraryException__1getMajorErrorNumber - (JNIEnv *env, jobject obj) +Java_hdf_hdf5lib_exceptions_HDF5LibraryException__1getMajorErrorNumber(JNIEnv *env, jobject obj) { H5E_num_t err_nums; @@ -221,8 +214,7 @@ Java_hdf_hdf5lib_exceptions_HDF5LibraryException__1getMajorErrorNumber * Extract the HDF-5 minor error number from the HDF-5 error stack. */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_exceptions_HDF5LibraryException__1getMinorErrorNumber - (JNIEnv *env, jobject obj) +Java_hdf_hdf5lib_exceptions_HDF5LibraryException__1getMinorErrorNumber(JNIEnv *env, jobject obj) { H5E_num_t err_nums; @@ -242,17 +234,16 @@ Java_hdf_hdf5lib_exceptions_HDF5LibraryException__1getMinorErrorNumber * Routine to raise particular Java exceptions from C. */ static jboolean -H5JNIErrorClass - (JNIEnv *env, const char *message, const char *className) +H5JNIErrorClass(JNIEnv *env, const char *message, const char *className) { - jstring str; - char *args[2]; - jboolean retVal = JNI_FALSE; + jstring str; + char * args[2]; + jboolean retVal = JNI_FALSE; if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, message))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - args[0] = (char *) str; + args[0] = (char *)str; args[1] = 0; THROWEXCEPTION(className, args); @@ -271,12 +262,23 @@ done: * exception. */ jboolean -h5outOfMemory - (JNIEnv *env, const char *functName) +h5outOfMemory(JNIEnv *env, const char *message) { - return H5JNIErrorClass(env, functName, "java/lang/OutOfMemoryError"); + return H5JNIErrorClass(env, message, "java/lang/OutOfMemoryError"); } /* end h5outOfMemory() */ +/* + * Create and throw an 'AssertionError' + * + * Note: This routine never returns from the 'throw', + * and the Java native method immediately raises the + * exception. + */ +jboolean +h5assertion(JNIEnv *env, const char *message) +{ + return H5JNIErrorClass(env, message, "java/lang/AssertionError"); +} /* end h5assertion() */ /* * A fatal error in a JNI call @@ -287,10 +289,9 @@ h5outOfMemory * exception. */ jboolean -h5JNIFatalError - (JNIEnv *env, const char *functName) +h5JNIFatalError(JNIEnv *env, const char *message) { - return H5JNIErrorClass(env, functName, "java/lang/InternalError"); + return H5JNIErrorClass(env, message, "java/lang/InternalError"); } /* end h5JNIFatalError() */ /* @@ -302,10 +303,9 @@ h5JNIFatalError * exception. */ jboolean -h5nullArgument - (JNIEnv *env, const char *functName) +h5nullArgument(JNIEnv *env, const char *message) { - return H5JNIErrorClass(env, functName, "java/lang/NullPointerException"); + return H5JNIErrorClass(env, message, "java/lang/NullPointerException"); } /* end h5nullArgument() */ /* @@ -317,10 +317,9 @@ h5nullArgument * exception. */ jboolean -h5badArgument - (JNIEnv *env, const char *functName) +h5badArgument(JNIEnv *env, const char *message) { - return H5JNIErrorClass(env, functName, "java/lang/IllegalArgumentException"); + return H5JNIErrorClass(env, message, "java/lang/IllegalArgumentException"); } /* end h5badArgument() */ /* @@ -332,10 +331,9 @@ h5badArgument * exception. */ jboolean -h5unimplemented - (JNIEnv *env, const char *functName) +h5unimplemented(JNIEnv *env, const char *message) { - return H5JNIErrorClass(env, functName, "java/lang/UnsupportedOperationException"); + return H5JNIErrorClass(env, message, "java/lang/UnsupportedOperationException"); } /* end h5unimplemented() */ /* h5raiseException(). This routine is called to generate @@ -346,8 +344,7 @@ h5unimplemented * exception. */ jboolean -h5raiseException - (JNIEnv *env, const char *message, const char *exception) +h5raiseException(JNIEnv *env, const char *message, const char *exception) { return H5JNIErrorClass(env, message, exception); } /* end h5raiseException() */ @@ -364,20 +361,19 @@ h5raiseException * exception. */ jboolean -h5libraryError - (JNIEnv *env) +h5libraryError(JNIEnv *env) { const char *exception = NULL; H5E_type_t error_msg_type; H5E_num_t exceptionNumbers; - jstring str = NULL; + jstring str = NULL; ssize_t msg_size = 0; hid_t min_num; hid_t maj_num; hid_t stk_id = H5I_INVALID_HID; - char *args[2]; - char *msg_str = NULL; - jboolean retVal = JNI_FALSE; + char * args[2]; + char * msg_str = NULL; + jboolean retVal = JNI_FALSE; exceptionNumbers.maj_num = 0; exceptionNumbers.min_num = 0; @@ -408,8 +404,8 @@ h5libraryError goto done; if (msg_size > 0) { - if (NULL == (msg_str = (char *) HDcalloc((size_t)msg_size + 1, sizeof(char)))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5libraryerror: failed to allocate buffer for error message"); + if (NULL == (msg_str = (char *)HDcalloc((size_t)msg_size + 1, sizeof(char)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5libraryerror: failed to allocate buffer for error message"); if ((msg_size = H5Eget_msg(min_num, &error_msg_type, msg_str, (size_t)msg_size + 1)) < 0) goto done; @@ -424,7 +420,7 @@ h5libraryError if (stk_id >= 0) H5Eset_current_stack(stk_id); - args[0] = (char *) str; + args[0] = (char *)str; args[1] = 0; THROWEXCEPTION(exception, args); @@ -443,8 +439,7 @@ done: * which goes with an HDF-5 error code. */ static const char * -defineHDF5LibraryException - (hid_t maj_num) +defineHDF5LibraryException(hid_t maj_num) { hid_t err_num = maj_num; @@ -460,8 +455,8 @@ defineHDF5LibraryException return "hdf/hdf5lib/exceptions/HDF5LowLevelIOException"; else if (H5E_FUNC == err_num) return "hdf/hdf5lib/exceptions/HDF5FunctionEntryExitException"; - else if (H5E_ATOM == err_num) - return "hdf/hdf5lib/exceptions/HDF5AtomException"; + else if (H5E_ID == err_num) + return "hdf/hdf5lib/exceptions/HDF5IdException"; else if (H5E_CACHE == err_num) return "hdf/hdf5lib/exceptions/HDF5MetaDataCacheException"; else if (H5E_BTREE == err_num) @@ -497,4 +492,3 @@ defineHDF5LibraryException #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ - diff --git a/java/src/jni/exceptionImp.h b/java/src/jni/exceptionImp.h index 5873202..38469df 100644 --- a/java/src/jni/exceptionImp.h +++ b/java/src/jni/exceptionImp.h @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -14,8 +13,8 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_exception */ -#ifndef _Included_hdf_hdf5lib_H5_exception -#define _Included_hdf_hdf5lib_H5_exception +#ifndef Included_hdf_hdf5lib_H5_exception +#define Included_hdf_hdf5lib_H5_exception #ifdef __cplusplus extern "C" { @@ -27,9 +26,7 @@ extern "C" { * Signature: ()I * */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5error_1off - (JNIEnv *env, jclass clss ); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5error_1off(JNIEnv *env, jclass clss); /* * Class: hdf_hdf5lib_exceptions_HDF5Library @@ -37,10 +34,7 @@ Java_hdf_hdf5lib_H5_H5error_1off * Signature: ()V * */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5error_1on - (JNIEnv *env, jclass clss ); - +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5error_1on(JNIEnv *env, jclass clss); /* * Class: hdf_hdf5lib_exceptions_HDFLibraryException @@ -49,30 +43,28 @@ Java_hdf_hdf5lib_H5_H5error_1on * * Call the HDF-5 library to print the HDF-5 error stack to 'file_name'. */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_exceptions_HDF5LibraryException_printStackTrace0 - (JNIEnv *env, jobject obj, jstring file_name); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_exceptions_HDF5LibraryException_printStackTrace0(JNIEnv *env, + jobject obj, + jstring file_name); /* * Class: hdf_hdf5lib_exceptions_HDFLibraryException * Method: _getMajorErrorNumber * Signature: ()J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_exceptions_HDF5LibraryException__1getMajorErrorNumber - (JNIEnv *env, jobject obj); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_exceptions_HDF5LibraryException__1getMajorErrorNumber(JNIEnv *env, + jobject obj); /* * Class: hdf_hdf5lib_exceptions_HDFLibraryException * Method: _getMinorErrorNumber * Signature: ()J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_exceptions_HDF5LibraryException__1getMinorErrorNumber - (JNIEnv *env, jobject obj); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_exceptions_HDF5LibraryException__1getMinorErrorNumber(JNIEnv *env, + jobject obj); #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_exception */ +#endif /* Included_hdf_hdf5lib_H5_exception */ diff --git a/java/src/jni/h5Constants.c b/java/src/jni/h5Constants.c index 9f52b3c..bdffdbd 100644 --- a/java/src/jni/h5Constants.c +++ b/java/src/jni/h5Constants.c @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -26,546 +26,1639 @@ extern "C" { #include <stdlib.h> #include "h5jni.h" -#pragma GCC diagnostic push -#pragma GCC diagnostic ignored "-Wmissing-prototypes" -#pragma GCC diagnostic ignored "-Wunused-parameter" +H5_GCC_CLANG_DIAG_OFF("missing-prototypes") +H5_GCC_CLANG_DIAG_OFF("unused-parameter") JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5_1QUARTER_1HADDR_1MAX(JNIEnv *env, jclass cls) { return (hsize_t)HADDR_MAX/4; } +Java_hdf_hdf5lib_HDF5Constants_H5_1QUARTER_1HADDR_1MAX(JNIEnv *env, jclass cls) +{ + return (hsize_t)HADDR_MAX / 4; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5_1SZIP_1ALLOW_1K13_1OPTION_1MASK(JNIEnv *env, jclass cls) { return H5_SZIP_ALLOW_K13_OPTION_MASK; } +Java_hdf_hdf5lib_HDF5Constants_H5_1SZIP_1ALLOW_1K13_1OPTION_1MASK(JNIEnv *env, jclass cls) +{ + return H5_SZIP_ALLOW_K13_OPTION_MASK; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5_1SZIP_1CHIP_1OPTION_1MASK(JNIEnv *env, jclass cls) { return H5_SZIP_CHIP_OPTION_MASK; } +Java_hdf_hdf5lib_HDF5Constants_H5_1SZIP_1CHIP_1OPTION_1MASK(JNIEnv *env, jclass cls) +{ + return H5_SZIP_CHIP_OPTION_MASK; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5_1SZIP_1EC_1OPTION_1MASK(JNIEnv *env, jclass cls) { return H5_SZIP_EC_OPTION_MASK; } +Java_hdf_hdf5lib_HDF5Constants_H5_1SZIP_1EC_1OPTION_1MASK(JNIEnv *env, jclass cls) +{ + return H5_SZIP_EC_OPTION_MASK; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5_1SZIP_1MAX_1PIXELS_1PER_1BLOCK(JNIEnv *env, jclass cls) { return H5_SZIP_MAX_PIXELS_PER_BLOCK; } +Java_hdf_hdf5lib_HDF5Constants_H5_1SZIP_1MAX_1PIXELS_1PER_1BLOCK(JNIEnv *env, jclass cls) +{ + return H5_SZIP_MAX_PIXELS_PER_BLOCK; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5_1SZIP_1NN_1OPTION_1MASK(JNIEnv *env, jclass cls) { return H5_SZIP_NN_OPTION_MASK; } +Java_hdf_hdf5lib_HDF5Constants_H5_1SZIP_1NN_1OPTION_1MASK(JNIEnv *env, jclass cls) +{ + return H5_SZIP_NN_OPTION_MASK; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5_1INDEX_1UNKNOWN(JNIEnv *env, jclass cls) { return H5_INDEX_UNKNOWN; } +Java_hdf_hdf5lib_HDF5Constants_H5_1INDEX_1UNKNOWN(JNIEnv *env, jclass cls) +{ + return H5_INDEX_UNKNOWN; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5_1INDEX_1NAME(JNIEnv *env, jclass cls) { return H5_INDEX_NAME; } +Java_hdf_hdf5lib_HDF5Constants_H5_1INDEX_1NAME(JNIEnv *env, jclass cls) +{ + return H5_INDEX_NAME; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5_1INDEX_1CRT_1ORDER(JNIEnv *env, jclass cls) { return H5_INDEX_CRT_ORDER; } +Java_hdf_hdf5lib_HDF5Constants_H5_1INDEX_1CRT_1ORDER(JNIEnv *env, jclass cls) +{ + return H5_INDEX_CRT_ORDER; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5_1INDEX_1N(JNIEnv *env, jclass cls) { return H5_INDEX_N; } +Java_hdf_hdf5lib_HDF5Constants_H5_1INDEX_1N(JNIEnv *env, jclass cls) +{ + return H5_INDEX_N; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5_1ITER_1UNKNOWN(JNIEnv *env, jclass cls) { return H5_ITER_UNKNOWN; } +Java_hdf_hdf5lib_HDF5Constants_H5_1ITER_1UNKNOWN(JNIEnv *env, jclass cls) +{ + return H5_ITER_UNKNOWN; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5_1ITER_1INC(JNIEnv *env, jclass cls) { return H5_ITER_INC; } +Java_hdf_hdf5lib_HDF5Constants_H5_1ITER_1INC(JNIEnv *env, jclass cls) +{ + return H5_ITER_INC; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5_1ITER_1DEC(JNIEnv *env, jclass cls) { return H5_ITER_DEC; } +Java_hdf_hdf5lib_HDF5Constants_H5_1ITER_1DEC(JNIEnv *env, jclass cls) +{ + return H5_ITER_DEC; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5_1ITER_1NATIVE(JNIEnv *env, jclass cls) { return H5_ITER_NATIVE; } +Java_hdf_hdf5lib_HDF5Constants_H5_1ITER_1NATIVE(JNIEnv *env, jclass cls) +{ + return H5_ITER_NATIVE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5_1ITER_1N(JNIEnv *env, jclass cls) { return H5_ITER_N; } +Java_hdf_hdf5lib_HDF5Constants_H5_1ITER_1N(JNIEnv *env, jclass cls) +{ + return H5_ITER_N; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5AC_1CURR_1CACHE_1CONFIG_1VERSION(JNIEnv *env, jclass cls) { return H5AC__CURR_CACHE_CONFIG_VERSION; } +Java_hdf_hdf5lib_HDF5Constants_H5AC_1CURR_1CACHE_1CONFIG_1VERSION(JNIEnv *env, jclass cls) +{ + return H5AC__CURR_CACHE_CONFIG_VERSION; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5AC_1MAX_1TRACE_1FILE_1NAME_1LEN(JNIEnv *env, jclass cls) { return H5AC__MAX_TRACE_FILE_NAME_LEN; } +Java_hdf_hdf5lib_HDF5Constants_H5AC_1MAX_1TRACE_1FILE_1NAME_1LEN(JNIEnv *env, jclass cls) +{ + return H5AC__MAX_TRACE_FILE_NAME_LEN; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5AC_1METADATA_1WRITE_1STRATEGY_1PROCESS_1ZERO_1ONLY(JNIEnv *env, jclass cls) { return H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY; } +Java_hdf_hdf5lib_HDF5Constants_H5AC_1METADATA_1WRITE_1STRATEGY_1PROCESS_1ZERO_1ONLY(JNIEnv *env, jclass cls) +{ + return H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5AC_1METADATA_1WRITE_1STRATEGY_1DISTRIBUTED(JNIEnv *env, jclass cls) { return H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED; } +Java_hdf_hdf5lib_HDF5Constants_H5AC_1METADATA_1WRITE_1STRATEGY_1DISTRIBUTED(JNIEnv *env, jclass cls) +{ + return H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5C_1incr_1off(JNIEnv *env, jclass cls) { return H5C_incr__off; } +Java_hdf_hdf5lib_HDF5Constants_H5C_1incr_1off(JNIEnv *env, jclass cls) +{ + return H5C_incr__off; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5C_1incr_1threshold(JNIEnv *env, jclass cls) { return H5C_incr__threshold; } +Java_hdf_hdf5lib_HDF5Constants_H5C_1incr_1threshold(JNIEnv *env, jclass cls) +{ + return H5C_incr__threshold; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5C_1flash_1incr_1off(JNIEnv *env, jclass cls) { return H5C_flash_incr__off; } +Java_hdf_hdf5lib_HDF5Constants_H5C_1flash_1incr_1off(JNIEnv *env, jclass cls) +{ + return H5C_flash_incr__off; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5C_1flash_1incr_1add_1space(JNIEnv *env, jclass cls) { return H5C_flash_incr__add_space; } +Java_hdf_hdf5lib_HDF5Constants_H5C_1flash_1incr_1add_1space(JNIEnv *env, jclass cls) +{ + return H5C_flash_incr__add_space; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5C_1decr_1off(JNIEnv *env, jclass cls) { return H5C_decr__off; } +Java_hdf_hdf5lib_HDF5Constants_H5C_1decr_1off(JNIEnv *env, jclass cls) +{ + return H5C_decr__off; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5C_1decr_1threshold(JNIEnv *env, jclass cls) { return H5C_decr__threshold; } +Java_hdf_hdf5lib_HDF5Constants_H5C_1decr_1threshold(JNIEnv *env, jclass cls) +{ + return H5C_decr__threshold; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5C_1decr_1age_1out(JNIEnv *env, jclass cls) { return H5C_decr__age_out; } +Java_hdf_hdf5lib_HDF5Constants_H5C_1decr_1age_1out(JNIEnv *env, jclass cls) +{ + return H5C_decr__age_out; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5C_1decr_1age_1out_1with_1threshold(JNIEnv *env, jclass cls) { return H5C_decr__age_out_with_threshold; } +Java_hdf_hdf5lib_HDF5Constants_H5C_1decr_1age_1out_1with_1threshold(JNIEnv *env, jclass cls) +{ + return H5C_decr__age_out_with_threshold; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5D_1CHUNK_1IDX_1BTREE(JNIEnv *env, jclass cls) { return H5D_CHUNK_IDX_BTREE; } +Java_hdf_hdf5lib_HDF5Constants_H5D_1CHUNK_1IDX_1BTREE(JNIEnv *env, jclass cls) +{ + return H5D_CHUNK_IDX_BTREE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5D_1ALLOC_1TIME_1DEFAULT(JNIEnv *env, jclass cls) { return H5D_ALLOC_TIME_DEFAULT; } +Java_hdf_hdf5lib_HDF5Constants_H5D_1ALLOC_1TIME_1DEFAULT(JNIEnv *env, jclass cls) +{ + return H5D_ALLOC_TIME_DEFAULT; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5D_1ALLOC_1TIME_1EARLY(JNIEnv *env, jclass cls) { return H5D_ALLOC_TIME_EARLY; } +Java_hdf_hdf5lib_HDF5Constants_H5D_1ALLOC_1TIME_1EARLY(JNIEnv *env, jclass cls) +{ + return H5D_ALLOC_TIME_EARLY; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5D_1ALLOC_1TIME_1ERROR(JNIEnv *env, jclass cls) { return H5D_ALLOC_TIME_ERROR; } +Java_hdf_hdf5lib_HDF5Constants_H5D_1ALLOC_1TIME_1ERROR(JNIEnv *env, jclass cls) +{ + return H5D_ALLOC_TIME_ERROR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5D_1ALLOC_1TIME_1INCR(JNIEnv *env, jclass cls) { return H5D_ALLOC_TIME_INCR; } +Java_hdf_hdf5lib_HDF5Constants_H5D_1ALLOC_1TIME_1INCR(JNIEnv *env, jclass cls) +{ + return H5D_ALLOC_TIME_INCR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5D_1ALLOC_1TIME_1LATE(JNIEnv *env, jclass cls) { return H5D_ALLOC_TIME_LATE; } +Java_hdf_hdf5lib_HDF5Constants_H5D_1ALLOC_1TIME_1LATE(JNIEnv *env, jclass cls) +{ + return H5D_ALLOC_TIME_LATE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5D_1FILL_1TIME_1ERROR(JNIEnv *env, jclass cls) { return H5D_FILL_TIME_ERROR; } +Java_hdf_hdf5lib_HDF5Constants_H5D_1FILL_1TIME_1ERROR(JNIEnv *env, jclass cls) +{ + return H5D_FILL_TIME_ERROR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5D_1FILL_1TIME_1ALLOC(JNIEnv *env, jclass cls) { return H5D_FILL_TIME_ALLOC; } +Java_hdf_hdf5lib_HDF5Constants_H5D_1FILL_1TIME_1ALLOC(JNIEnv *env, jclass cls) +{ + return H5D_FILL_TIME_ALLOC; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5D_1FILL_1TIME_1NEVER(JNIEnv *env, jclass cls) { return H5D_FILL_TIME_NEVER; } +Java_hdf_hdf5lib_HDF5Constants_H5D_1FILL_1TIME_1NEVER(JNIEnv *env, jclass cls) +{ + return H5D_FILL_TIME_NEVER; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5D_1FILL_1TIME_1IFSET(JNIEnv *env, jclass cls) { return H5D_FILL_TIME_IFSET; } +Java_hdf_hdf5lib_HDF5Constants_H5D_1FILL_1TIME_1IFSET(JNIEnv *env, jclass cls) +{ + return H5D_FILL_TIME_IFSET; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5D_1FILL_1VALUE_1DEFAULT(JNIEnv *env, jclass cls) { return H5D_FILL_VALUE_DEFAULT; } +Java_hdf_hdf5lib_HDF5Constants_H5D_1FILL_1VALUE_1DEFAULT(JNIEnv *env, jclass cls) +{ + return H5D_FILL_VALUE_DEFAULT; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5D_1FILL_1VALUE_1ERROR(JNIEnv *env, jclass cls) { return H5D_FILL_VALUE_ERROR; } +Java_hdf_hdf5lib_HDF5Constants_H5D_1FILL_1VALUE_1ERROR(JNIEnv *env, jclass cls) +{ + return H5D_FILL_VALUE_ERROR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5D_1FILL_1VALUE_1UNDEFINED(JNIEnv *env, jclass cls) { return H5D_FILL_VALUE_UNDEFINED; } +Java_hdf_hdf5lib_HDF5Constants_H5D_1FILL_1VALUE_1UNDEFINED(JNIEnv *env, jclass cls) +{ + return H5D_FILL_VALUE_UNDEFINED; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5D_1FILL_1VALUE_1USER_1DEFINED(JNIEnv *env, jclass cls) { return H5D_FILL_VALUE_USER_DEFINED; } +Java_hdf_hdf5lib_HDF5Constants_H5D_1FILL_1VALUE_1USER_1DEFINED(JNIEnv *env, jclass cls) +{ + return H5D_FILL_VALUE_USER_DEFINED; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5D_1LAYOUT_1ERROR(JNIEnv *env, jclass cls) { return H5D_LAYOUT_ERROR; } +Java_hdf_hdf5lib_HDF5Constants_H5D_1LAYOUT_1ERROR(JNIEnv *env, jclass cls) +{ + return H5D_LAYOUT_ERROR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5D_1CHUNKED(JNIEnv *env, jclass cls) { return H5D_CHUNKED; } +Java_hdf_hdf5lib_HDF5Constants_H5D_1CHUNKED(JNIEnv *env, jclass cls) +{ + return H5D_CHUNKED; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5D_1COMPACT(JNIEnv *env, jclass cls) { return H5D_COMPACT; } +Java_hdf_hdf5lib_HDF5Constants_H5D_1COMPACT(JNIEnv *env, jclass cls) +{ + return H5D_COMPACT; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5D_1CONTIGUOUS(JNIEnv *env, jclass cls) { return H5D_CONTIGUOUS; } +Java_hdf_hdf5lib_HDF5Constants_H5D_1CONTIGUOUS(JNIEnv *env, jclass cls) +{ + return H5D_CONTIGUOUS; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5D_1VIRTUAL(JNIEnv *env, jclass cls) { return H5D_VIRTUAL; } +Java_hdf_hdf5lib_HDF5Constants_H5D_1VIRTUAL(JNIEnv *env, jclass cls) +{ + return H5D_VIRTUAL; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5D_1NLAYOUTS(JNIEnv *env, jclass cls) { return H5D_NLAYOUTS; } +Java_hdf_hdf5lib_HDF5Constants_H5D_1NLAYOUTS(JNIEnv *env, jclass cls) +{ + return H5D_NLAYOUTS; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5D_1SPACE_1STATUS_1ALLOCATED(JNIEnv *env, jclass cls) { return H5D_SPACE_STATUS_ALLOCATED; } +Java_hdf_hdf5lib_HDF5Constants_H5D_1SPACE_1STATUS_1ALLOCATED(JNIEnv *env, jclass cls) +{ + return H5D_SPACE_STATUS_ALLOCATED; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5D_1SPACE_1STATUS_1ERROR(JNIEnv *env, jclass cls) { return H5D_SPACE_STATUS_ERROR; } +Java_hdf_hdf5lib_HDF5Constants_H5D_1SPACE_1STATUS_1ERROR(JNIEnv *env, jclass cls) +{ + return H5D_SPACE_STATUS_ERROR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5D_1SPACE_1STATUS_1NOT_1ALLOCATED(JNIEnv *env, jclass cls) { return H5D_SPACE_STATUS_NOT_ALLOCATED; } +Java_hdf_hdf5lib_HDF5Constants_H5D_1SPACE_1STATUS_1NOT_1ALLOCATED(JNIEnv *env, jclass cls) +{ + return H5D_SPACE_STATUS_NOT_ALLOCATED; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5D_1SPACE_1STATUS_1PART_1ALLOCATED(JNIEnv *env, jclass cls) { return H5D_SPACE_STATUS_PART_ALLOCATED; } +Java_hdf_hdf5lib_HDF5Constants_H5D_1SPACE_1STATUS_1PART_1ALLOCATED(JNIEnv *env, jclass cls) +{ + return H5D_SPACE_STATUS_PART_ALLOCATED; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5D_1VDS_1ERROR(JNIEnv *env, jclass cls) { return H5D_VDS_ERROR; } +Java_hdf_hdf5lib_HDF5Constants_H5D_1VDS_1ERROR(JNIEnv *env, jclass cls) +{ + return H5D_VDS_ERROR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5D_1VDS_1FIRST_1MISSING(JNIEnv *env, jclass cls) { return H5D_VDS_FIRST_MISSING; } +Java_hdf_hdf5lib_HDF5Constants_H5D_1VDS_1FIRST_1MISSING(JNIEnv *env, jclass cls) +{ + return H5D_VDS_FIRST_MISSING; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5D_1VDS_1LAST_1AVAILABLE(JNIEnv *env, jclass cls) { return H5D_VDS_LAST_AVAILABLE; } +Java_hdf_hdf5lib_HDF5Constants_H5D_1VDS_1LAST_1AVAILABLE(JNIEnv *env, jclass cls) +{ + return H5D_VDS_LAST_AVAILABLE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5D_1CHUNK_1DONT_1FILTER_1PARTIAL_1CHUNKS(JNIEnv *env, jclass cls) { return H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS; } +Java_hdf_hdf5lib_HDF5Constants_H5D_1CHUNK_1DONT_1FILTER_1PARTIAL_1CHUNKS(JNIEnv *env, jclass cls) +{ + return H5D_CHUNK_DONT_FILTER_PARTIAL_CHUNKS; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1ALIGNMENT(JNIEnv *env, jclass cls) { return H5E_ALIGNMENT; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1ALIGNMENT(JNIEnv *env, jclass cls) +{ + return H5E_ALIGNMENT; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1ALREADYEXISTS(JNIEnv *env, jclass cls) +{ + return H5E_ALREADYEXISTS; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1ALREADYINIT(JNIEnv *env, jclass cls) +{ + return H5E_ALREADYINIT; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1ARGS(JNIEnv *env, jclass cls) +{ + return H5E_ARGS; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1ID(JNIEnv *env, jclass cls) +{ + return H5E_ID; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1ATTR(JNIEnv *env, jclass cls) +{ + return H5E_ATTR; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1BADID(JNIEnv *env, jclass cls) +{ + return H5E_BADID; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1BADFILE(JNIEnv *env, jclass cls) +{ + return H5E_BADFILE; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1BADGROUP(JNIEnv *env, jclass cls) +{ + return H5E_BADGROUP; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1BADITER(JNIEnv *env, jclass cls) +{ + return H5E_BADITER; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1BADMESG(JNIEnv *env, jclass cls) +{ + return H5E_BADMESG; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1BADRANGE(JNIEnv *env, jclass cls) +{ + return H5E_BADRANGE; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1BADSELECT(JNIEnv *env, jclass cls) +{ + return H5E_BADSELECT; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1BADSIZE(JNIEnv *env, jclass cls) +{ + return H5E_BADSIZE; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1BADTYPE(JNIEnv *env, jclass cls) +{ + return H5E_BADTYPE; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1BADVALUE(JNIEnv *env, jclass cls) +{ + return H5E_BADVALUE; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1BTREE(JNIEnv *env, jclass cls) +{ + return H5E_BTREE; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CACHE(JNIEnv *env, jclass cls) +{ + return H5E_CACHE; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CALLBACK(JNIEnv *env, jclass cls) +{ + return H5E_CALLBACK; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANAPPLY(JNIEnv *env, jclass cls) +{ + return H5E_CANAPPLY; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTALLOC(JNIEnv *env, jclass cls) +{ + return H5E_CANTALLOC; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTAPPEND(JNIEnv *env, jclass cls) +{ + return H5E_CANTAPPEND; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTATTACH(JNIEnv *env, jclass cls) +{ + return H5E_CANTATTACH; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCLEAN(JNIEnv *env, jclass cls) +{ + return H5E_CANTCLEAN; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCLIP(JNIEnv *env, jclass cls) +{ + return H5E_CANTCLIP; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCLOSEFILE(JNIEnv *env, jclass cls) +{ + return H5E_CANTCLOSEFILE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1ALREADYEXISTS(JNIEnv *env, jclass cls) { return H5E_ALREADYEXISTS; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCLOSEOBJ(JNIEnv *env, jclass cls) +{ + return H5E_CANTCLOSEOBJ; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCOMPARE(JNIEnv *env, jclass cls) +{ + return H5E_CANTCOMPARE; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCOMPUTE(JNIEnv *env, jclass cls) +{ + return H5E_CANTCOMPUTE; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCONVERT(JNIEnv *env, jclass cls) +{ + return H5E_CANTCONVERT; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCOPY(JNIEnv *env, jclass cls) +{ + return H5E_CANTCOPY; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1ALREADYINIT(JNIEnv *env, jclass cls) { return H5E_ALREADYINIT; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCORK(JNIEnv *env, jclass cls) +{ + return H5E_CANTCORK; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1ARGS(JNIEnv *env, jclass cls) { return H5E_ARGS; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCOUNT(JNIEnv *env, jclass cls) +{ + return H5E_CANTCOUNT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1ATOM(JNIEnv *env, jclass cls) { return H5E_ATOM; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCREATE(JNIEnv *env, jclass cls) +{ + return H5E_CANTCREATE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1ATTR(JNIEnv *env, jclass cls) { return H5E_ATTR; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTDEC(JNIEnv *env, jclass cls) +{ + return H5E_CANTDEC; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1BADATOM(JNIEnv *env, jclass cls) { return H5E_BADATOM; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTDECODE(JNIEnv *env, jclass cls) +{ + return H5E_CANTDECODE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1BADFILE(JNIEnv *env, jclass cls) { return H5E_BADFILE; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTDELETE(JNIEnv *env, jclass cls) +{ + return H5E_CANTDELETE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1BADGROUP(JNIEnv *env, jclass cls) { return H5E_BADGROUP; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTDELETEFILE(JNIEnv *env, jclass cls) +{ + return H5E_CANTDELETEFILE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1BADMESG(JNIEnv *env, jclass cls) { return H5E_BADMESG; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTDEPEND(JNIEnv *env, jclass cls) +{ + return H5E_CANTDEPEND; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1BADRANGE(JNIEnv *env, jclass cls) { return H5E_BADRANGE; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTDIRTY(JNIEnv *env, jclass cls) +{ + return H5E_CANTDIRTY; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1BADSELECT(JNIEnv *env, jclass cls) { return H5E_BADSELECT; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTFILTER(JNIEnv *env, jclass cls) +{ + return H5E_CANTFILTER; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1BADSIZE(JNIEnv *env, jclass cls) { return H5E_BADSIZE; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTENCODE(JNIEnv *env, jclass cls) +{ + return H5E_CANTENCODE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1BADTYPE(JNIEnv *env, jclass cls) { return H5E_BADTYPE; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTEXPUNGE(JNIEnv *env, jclass cls) +{ + return H5E_CANTEXPUNGE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1BADVALUE(JNIEnv *env, jclass cls) { return H5E_BADVALUE; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTEXTEND(JNIEnv *env, jclass cls) +{ + return H5E_CANTEXTEND; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1BTREE(JNIEnv *env, jclass cls) { return H5E_BTREE; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTFLUSH(JNIEnv *env, jclass cls) +{ + return H5E_CANTFLUSH; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTFREE(JNIEnv *env, jclass cls) +{ + return H5E_CANTFREE; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTGATHER(JNIEnv *env, jclass cls) +{ + return H5E_CANTGATHER; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTGC(JNIEnv *env, jclass cls) +{ + return H5E_CANTGC; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTGET(JNIEnv *env, jclass cls) +{ + return H5E_CANTGET; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTGETSIZE(JNIEnv *env, jclass cls) +{ + return H5E_CANTGETSIZE; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTINC(JNIEnv *env, jclass cls) +{ + return H5E_CANTINC; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTINIT(JNIEnv *env, jclass cls) +{ + return H5E_CANTINIT; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTINS(JNIEnv *env, jclass cls) +{ + return H5E_CANTINS; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTINSERT(JNIEnv *env, jclass cls) +{ + return H5E_CANTINSERT; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTLIST(JNIEnv *env, jclass cls) +{ + return H5E_CANTLIST; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTLOAD(JNIEnv *env, jclass cls) +{ + return H5E_CANTLOAD; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTLOCK(JNIEnv *env, jclass cls) +{ + return H5E_CANTLOCK; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CACHE(JNIEnv *env, jclass cls) { return H5E_CACHE; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTLOCKFILE(JNIEnv *env, jclass cls) +{ + return H5E_CANTLOCKFILE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CALLBACK(JNIEnv *env, jclass cls) { return H5E_CALLBACK; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTMARKCLEAN(JNIEnv *env, jclass cls) +{ + return H5E_CANTMARKCLEAN; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANAPPLY(JNIEnv *env, jclass cls) { return H5E_CANAPPLY; } -/*JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTALLOC(JNIEnv *env, jclass cls) { return H5E_CANTALLOC; }*/ +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTMARKDIRTY(JNIEnv *env, jclass cls) +{ + return H5E_CANTMARKDIRTY; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCLIP(JNIEnv *env, jclass cls) { return H5E_CANTCLIP; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTMARKSERIALIZED(JNIEnv *env, jclass cls) +{ + return H5E_CANTMARKSERIALIZED; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCLOSEFILE(JNIEnv *env, jclass cls) { return H5E_CANTCLOSEFILE; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTMARKUNSERIALIZED(JNIEnv *env, jclass cls) +{ + return H5E_CANTMARKUNSERIALIZED; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCONVERT(JNIEnv *env, jclass cls) { return H5E_CANTCONVERT; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTMERGE(JNIEnv *env, jclass cls) +{ + return H5E_CANTMERGE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCOPY(JNIEnv *env, jclass cls) { return H5E_CANTCOPY; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTMODIFY(JNIEnv *env, jclass cls) +{ + return H5E_CANTMODIFY; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCOUNT(JNIEnv *env, jclass cls) { return H5E_CANTCOUNT; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTMOVE(JNIEnv *env, jclass cls) +{ + return H5E_CANTMOVE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTCREATE(JNIEnv *env, jclass cls) { return H5E_CANTCREATE; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTNEXT(JNIEnv *env, jclass cls) +{ + return H5E_CANTNEXT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTDEC(JNIEnv *env, jclass cls) { return H5E_CANTDEC; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTNOTIFY(JNIEnv *env, jclass cls) +{ + return H5E_CANTNOTIFY; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTDECODE(JNIEnv *env, jclass cls) { return H5E_CANTDECODE; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTOPENFILE(JNIEnv *env, jclass cls) +{ + return H5E_CANTOPENFILE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTDELETE(JNIEnv *env, jclass cls) { return H5E_CANTDELETE; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTOPENOBJ(JNIEnv *env, jclass cls) +{ + return H5E_CANTOPENOBJ; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTDELETEFILE(JNIEnv *env, jclass cls) { return H5E_CANTDELETEFILE; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTOPERATE(JNIEnv *env, jclass cls) +{ + return H5E_CANTOPERATE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTENCODE(JNIEnv *env, jclass cls) { return H5E_CANTENCODE; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTPACK(JNIEnv *env, jclass cls) +{ + return H5E_CANTPACK; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTFLUSH(JNIEnv *env, jclass cls) { return H5E_CANTFLUSH; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTPIN(JNIEnv *env, jclass cls) +{ + return H5E_CANTPIN; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTFREE(JNIEnv *env, jclass cls) { return H5E_CANTFREE; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTPROTECT(JNIEnv *env, jclass cls) +{ + return H5E_CANTPROTECT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTGET(JNIEnv *env, jclass cls) { return H5E_CANTGET; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTRECV(JNIEnv *env, jclass cls) +{ + return H5E_CANTRECV; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTINC(JNIEnv *env, jclass cls) { return H5E_CANTINC; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTREDISTRIBUTE(JNIEnv *env, jclass cls) +{ + return H5E_CANTREDISTRIBUTE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTINIT(JNIEnv *env, jclass cls) { return H5E_CANTINIT; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTREGISTER(JNIEnv *env, jclass cls) +{ + return H5E_CANTREGISTER; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTINSERT(JNIEnv *env, jclass cls) { return H5E_CANTINSERT; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTRELEASE(JNIEnv *env, jclass cls) +{ + return H5E_CANTRELEASE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTLIST(JNIEnv *env, jclass cls) { return H5E_CANTLIST; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTREMOVE(JNIEnv *env, jclass cls) +{ + return H5E_CANTREMOVE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTLOAD(JNIEnv *env, jclass cls) { return H5E_CANTLOAD; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTRENAME(JNIEnv *env, jclass cls) +{ + return H5E_CANTRENAME; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTLOCK(JNIEnv *env, jclass cls) { return H5E_CANTLOCK; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTRESET(JNIEnv *env, jclass cls) +{ + return H5E_CANTRESET; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTNEXT(JNIEnv *env, jclass cls) { return H5E_CANTNEXT; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTRESIZE(JNIEnv *env, jclass cls) +{ + return H5E_CANTRESIZE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTOPENFILE(JNIEnv *env, jclass cls) { return H5E_CANTOPENFILE; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTRESTORE(JNIEnv *env, jclass cls) +{ + return H5E_CANTRESTORE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTOPENOBJ(JNIEnv *env, jclass cls) { return H5E_CANTOPENOBJ; } -/*JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTRECV(JNIEnv *env, jclass cls) { return H5E_CANTRECV; }*/ +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTREVIVE(JNIEnv *env, jclass cls) +{ + return H5E_CANTREVIVE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTREGISTER(JNIEnv *env, jclass cls) { return H5E_CANTREGISTER; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTSHRINK(JNIEnv *env, jclass cls) +{ + return H5E_CANTSHRINK; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTRELEASE(JNIEnv *env, jclass cls) { return H5E_CANTRELEASE; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTSELECT(JNIEnv *env, jclass cls) +{ + return H5E_CANTSELECT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTSELECT(JNIEnv *env, jclass cls) { return H5E_CANTSELECT; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTSET(JNIEnv *env, jclass cls) +{ + return H5E_CANTSET; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTSET(JNIEnv *env, jclass cls) { return H5E_CANTSET; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTSERIALIZE(JNIEnv *env, jclass cls) +{ + return H5E_CANTSERIALIZE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTSPLIT(JNIEnv *env, jclass cls) { return H5E_CANTSPLIT; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTSORT(JNIEnv *env, jclass cls) +{ + return H5E_CANTSORT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTUNLOCK(JNIEnv *env, jclass cls) { return H5E_CANTUNLOCK; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTSPLIT(JNIEnv *env, jclass cls) +{ + return H5E_CANTSPLIT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1CLOSEERROR(JNIEnv *env, jclass cls) { return H5E_CLOSEERROR; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTSWAP(JNIEnv *env, jclass cls) +{ + return H5E_CANTSWAP; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1COMPLEN(JNIEnv *env, jclass cls) { return H5E_COMPLEN; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTTAG(JNIEnv *env, jclass cls) +{ + return H5E_CANTTAG; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1DATASET(JNIEnv *env, jclass cls) { return H5E_DATASET; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTUNCORK(JNIEnv *env, jclass cls) +{ + return H5E_CANTUNCORK; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1DATASPACE(JNIEnv *env, jclass cls) { return H5E_DATASPACE; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTUNDEPEND(JNIEnv *env, jclass cls) +{ + return H5E_CANTUNDEPEND; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1DATATYPE(JNIEnv *env, jclass cls) { return H5E_DATATYPE; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTUNLOCK(JNIEnv *env, jclass cls) +{ + return H5E_CANTUNLOCK; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1DEFAULT(JNIEnv *env, jclass cls) { return H5E_DEFAULT; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTUNLOCKFILE(JNIEnv *env, jclass cls) +{ + return H5E_CANTUNLOCKFILE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1DUPCLASS(JNIEnv *env, jclass cls) { return H5E_DUPCLASS; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTUNPIN(JNIEnv *env, jclass cls) +{ + return H5E_CANTUNPIN; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1EFL(JNIEnv *env, jclass cls) { return H5E_EFL; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTUNPROTECT(JNIEnv *env, jclass cls) +{ + return H5E_CANTUNPROTECT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1EXISTS(JNIEnv *env, jclass cls) { return H5E_EXISTS; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTUNSERIALIZE(JNIEnv *env, jclass cls) +{ + return H5E_CANTUNSERIALIZE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1FCNTL(JNIEnv *env, jclass cls) { return H5E_FCNTL; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CANTUPDATE(JNIEnv *env, jclass cls) +{ + return H5E_CANTUPDATE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1FILE(JNIEnv *env, jclass cls) { return H5E_FILE; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CLOSEERROR(JNIEnv *env, jclass cls) +{ + return H5E_CLOSEERROR; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1FILEEXISTS(JNIEnv *env, jclass cls) { return H5E_FILEEXISTS; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1COMPLEN(JNIEnv *env, jclass cls) +{ + return H5E_COMPLEN; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1FILEOPEN(JNIEnv *env, jclass cls) { return H5E_FILEOPEN; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1CONTEXT(JNIEnv *env, jclass cls) +{ + return H5E_CONTEXT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1FUNC(JNIEnv *env, jclass cls) { return H5E_FUNC; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1DATASET(JNIEnv *env, jclass cls) +{ + return H5E_DATASET; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1HEAP(JNIEnv *env, jclass cls) { return H5E_HEAP; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1DATASPACE(JNIEnv *env, jclass cls) +{ + return H5E_DATASPACE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1INTERNAL(JNIEnv *env, jclass cls) { return H5E_INTERNAL; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1DATATYPE(JNIEnv *env, jclass cls) +{ + return H5E_DATATYPE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1IO(JNIEnv *env, jclass cls) { return H5E_IO; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1DEFAULT(JNIEnv *env, jclass cls) +{ + return H5E_DEFAULT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1LINK(JNIEnv *env, jclass cls) { return H5E_LINK; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1DUPCLASS(JNIEnv *env, jclass cls) +{ + return H5E_DUPCLASS; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1LINKCOUNT(JNIEnv *env, jclass cls) { return H5E_LINKCOUNT; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1EARRAY(JNIEnv *env, jclass cls) +{ + return H5E_EARRAY; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1EFL(JNIEnv *env, jclass cls) +{ + return H5E_EFL; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1ERROR(JNIEnv *env, jclass cls) +{ + return H5E_ERROR; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1EXISTS(JNIEnv *env, jclass cls) +{ + return H5E_EXISTS; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1FARRAY(JNIEnv *env, jclass cls) +{ + return H5E_FARRAY; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1FCNTL(JNIEnv *env, jclass cls) +{ + return H5E_FCNTL; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1FILE(JNIEnv *env, jclass cls) +{ + return H5E_FILE; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1FILEEXISTS(JNIEnv *env, jclass cls) +{ + return H5E_FILEEXISTS; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1FILEOPEN(JNIEnv *env, jclass cls) +{ + return H5E_FILEOPEN; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1FSPACE(JNIEnv *env, jclass cls) +{ + return H5E_FSPACE; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1FUNC(JNIEnv *env, jclass cls) +{ + return H5E_FUNC; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1HEAP(JNIEnv *env, jclass cls) +{ + return H5E_HEAP; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1INCONSISTENTSTATE(JNIEnv *env, jclass cls) +{ + return H5E_INCONSISTENTSTATE; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1INTERNAL(JNIEnv *env, jclass cls) +{ + return H5E_INTERNAL; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1IO(JNIEnv *env, jclass cls) +{ + return H5E_IO; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1LINK(JNIEnv *env, jclass cls) +{ + return H5E_LINK; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1LINKCOUNT(JNIEnv *env, jclass cls) +{ + return H5E_LINKCOUNT; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1LOGGING(JNIEnv *env, jclass cls) +{ + return H5E_LOGGING; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1MAJOR(JNIEnv *env, jclass cls) { return H5E_MAJOR; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1MAJOR(JNIEnv *env, jclass cls) +{ + return H5E_MAJOR; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1MAP(JNIEnv *env, jclass cls) +{ + return H5E_MAP; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1MINOR(JNIEnv *env, jclass cls) { return H5E_MINOR; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1MINOR(JNIEnv *env, jclass cls) +{ + return H5E_MINOR; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1MOUNT(JNIEnv *env, jclass cls) +{ + return H5E_MOUNT; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1MPI(JNIEnv *env, jclass cls) +{ + return H5E_MPI; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1MPIERRSTR(JNIEnv *env, jclass cls) +{ + return H5E_MPIERRSTR; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1NLINKS(JNIEnv *env, jclass cls) +{ + return H5E_NLINKS; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1NO_1INDEPENDENT(JNIEnv *env, jclass cls) +{ + return H5E_NO_INDEPENDENT; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1NOENCODER(JNIEnv *env, jclass cls) +{ + return H5E_NOENCODER; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1NOFILTER(JNIEnv *env, jclass cls) +{ + return H5E_NOFILTER; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1MOUNT(JNIEnv *env, jclass cls) { return H5E_MOUNT; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1NOIDS(JNIEnv *env, jclass cls) +{ + return H5E_NOIDS; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1MPI(JNIEnv *env, jclass cls) { return H5E_MPI; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1NONE_1MAJOR(JNIEnv *env, jclass cls) +{ + return H5E_NONE_MAJOR; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1MPIERRSTR(JNIEnv *env, jclass cls) { return H5E_MPIERRSTR; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1NONE_1MINOR(JNIEnv *env, jclass cls) +{ + return H5E_NONE_MINOR; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1NOFILTER(JNIEnv *env, jclass cls) { return H5E_NOFILTER; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1NOSPACE(JNIEnv *env, jclass cls) +{ + return H5E_NOSPACE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1NOIDS(JNIEnv *env, jclass cls) { return H5E_NOIDS; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1NOTCACHED(JNIEnv *env, jclass cls) +{ + return H5E_NOTCACHED; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1NONE_1MAJOR(JNIEnv *env, jclass cls) { return H5E_NONE_MAJOR; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1NOTFOUND(JNIEnv *env, jclass cls) +{ + return H5E_NOTFOUND; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1NONE_1MINOR(JNIEnv *env, jclass cls) { return H5E_NONE_MINOR; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1NOTHDF5(JNIEnv *env, jclass cls) +{ + return H5E_NOTHDF5; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1NOSPACE(JNIEnv *env, jclass cls) { return H5E_NOSPACE; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1NOTREGISTERED(JNIEnv *env, jclass cls) +{ + return H5E_NOTREGISTERED; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1NOTCACHED(JNIEnv *env, jclass cls) { return H5E_NOTCACHED; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1OBJOPEN(JNIEnv *env, jclass cls) +{ + return H5E_OBJOPEN; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1NOTFOUND(JNIEnv *env, jclass cls) { return H5E_NOTFOUND; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1OHDR(JNIEnv *env, jclass cls) +{ + return H5E_OHDR; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1NOTHDF5(JNIEnv *env, jclass cls) { return H5E_NOTHDF5; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1OPENERROR(JNIEnv *env, jclass cls) +{ + return H5E_OPENERROR; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1OHDR(JNIEnv *env, jclass cls) { return H5E_OHDR; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1OVERFLOW(JNIEnv *env, jclass cls) +{ + return H5E_OVERFLOW; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1OVERFLOW(JNIEnv *env, jclass cls) { return H5E_OVERFLOW; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1PAGEBUF(JNIEnv *env, jclass cls) +{ + return H5E_PAGEBUF; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1PLINE(JNIEnv *env, jclass cls) { return H5E_PLINE; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1PATH(JNIEnv *env, jclass cls) +{ + return H5E_PATH; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1PLIST(JNIEnv *env, jclass cls) { return H5E_PLIST; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1PLINE(JNIEnv *env, jclass cls) +{ + return H5E_PLINE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1PROTECT(JNIEnv *env, jclass cls) { return H5E_PROTECT; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1PLIST(JNIEnv *env, jclass cls) +{ + return H5E_PLIST; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1READERROR(JNIEnv *env, jclass cls) { return H5E_READERROR; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1PLUGIN(JNIEnv *env, jclass cls) +{ + return H5E_PLUGIN; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1REFERENCE(JNIEnv *env, jclass cls) { return H5E_REFERENCE; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1PROTECT(JNIEnv *env, jclass cls) +{ + return H5E_PROTECT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1RESOURCE(JNIEnv *env, jclass cls) { return H5E_RESOURCE; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1READERROR(JNIEnv *env, jclass cls) +{ + return H5E_READERROR; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1RS(JNIEnv *env, jclass cls) { return H5E_RS; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1REFERENCE(JNIEnv *env, jclass cls) +{ + return H5E_REFERENCE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1SEEKERROR(JNIEnv *env, jclass cls) { return H5E_SEEKERROR; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1RESOURCE(JNIEnv *env, jclass cls) +{ + return H5E_RESOURCE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1SETLOCAL(JNIEnv *env, jclass cls) { return H5E_SETLOCAL; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1RS(JNIEnv *env, jclass cls) +{ + return H5E_RS; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1STORAGE(JNIEnv *env, jclass cls) { return H5E_STORAGE; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1SEEKERROR(JNIEnv *env, jclass cls) +{ + return H5E_SEEKERROR; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1SYM(JNIEnv *env, jclass cls) { return H5E_SYM; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1SETDISALLOWED(JNIEnv *env, jclass cls) +{ + return H5E_SETDISALLOWED; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1TRUNCATED(JNIEnv *env, jclass cls) { return H5E_TRUNCATED; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1SETLOCAL(JNIEnv *env, jclass cls) +{ + return H5E_SETLOCAL; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1TST(JNIEnv *env, jclass cls) { return H5E_TST; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1SLIST(JNIEnv *env, jclass cls) +{ + return H5E_SLIST; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1UNINITIALIZED(JNIEnv *env, jclass cls) { return H5E_UNINITIALIZED; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1SOHM(JNIEnv *env, jclass cls) +{ + return H5E_SOHM; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1UNSUPPORTED(JNIEnv *env, jclass cls) { return H5E_UNSUPPORTED; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1STORAGE(JNIEnv *env, jclass cls) +{ + return H5E_STORAGE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1VERSION(JNIEnv *env, jclass cls) { return H5E_VERSION; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1SYM(JNIEnv *env, jclass cls) +{ + return H5E_SYM; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1VFL(JNIEnv *env, jclass cls) { return H5E_VFL; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1SYSERRSTR(JNIEnv *env, jclass cls) +{ + return H5E_SYSERRSTR; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1VOL(JNIEnv *env, jclass cls) { return H5E_VOL; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1SYSTEM(JNIEnv *env, jclass cls) +{ + return H5E_SYSTEM; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1WALK_1DOWNWARD(JNIEnv *env, jclass cls) { return H5E_WALK_DOWNWARD; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1TRAVERSE(JNIEnv *env, jclass cls) +{ + return H5E_TRAVERSE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1WALK_1UPWARD(JNIEnv *env, jclass cls) { return H5E_WALK_UPWARD; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1TRUNCATED(JNIEnv *env, jclass cls) +{ + return H5E_TRUNCATED; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5E_1WRITEERROR(JNIEnv *env, jclass cls) { return H5E_WRITEERROR; } - +Java_hdf_hdf5lib_HDF5Constants_H5E_1TST(JNIEnv *env, jclass cls) +{ + return H5E_TST; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5ES_1STATUS_1IN_1PROGRESS(JNIEnv *env, jclass cls) { return H5ES_STATUS_IN_PROGRESS; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1UNINITIALIZED(JNIEnv *env, jclass cls) +{ + return H5E_UNINITIALIZED; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5ES_1STATUS_1SUCCEED(JNIEnv *env, jclass cls) { return H5ES_STATUS_SUCCEED; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1UNSUPPORTED(JNIEnv *env, jclass cls) +{ + return H5E_UNSUPPORTED; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5ES_1STATUS_1FAIL(JNIEnv *env, jclass cls) { return H5ES_STATUS_FAIL; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1VERSION(JNIEnv *env, jclass cls) +{ + return H5E_VERSION; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5ES_1STATUS_1CANCELED(JNIEnv *env, jclass cls) { return H5ES_STATUS_CANCELED; } +Java_hdf_hdf5lib_HDF5Constants_H5E_1VFL(JNIEnv *env, jclass cls) +{ + return H5E_VFL; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1VOL(JNIEnv *env, jclass cls) +{ + return H5E_VOL; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1WALK_1DOWNWARD(JNIEnv *env, jclass cls) +{ + return H5E_WALK_DOWNWARD; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1WALK_1UPWARD(JNIEnv *env, jclass cls) +{ + return H5E_WALK_UPWARD; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5E_1WRITEERROR(JNIEnv *env, jclass cls) +{ + return H5E_WRITEERROR; +} + +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5ES_1STATUS_1IN_1PROGRESS(JNIEnv *env, jclass cls) +{ + return H5ES_STATUS_IN_PROGRESS; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5ES_1STATUS_1SUCCEED(JNIEnv *env, jclass cls) +{ + return H5ES_STATUS_SUCCEED; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5ES_1STATUS_1FAIL(JNIEnv *env, jclass cls) +{ + return H5ES_STATUS_FAIL; +} /* Java does not have unsigned native types */ -#pragma GCC diagnostic push -#pragma GCC diagnostic ignored "-Wsign-conversion" +H5_GCC_CLANG_DIAG_OFF("sign-conversion") JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1ACC_1CREAT(JNIEnv *env, jclass cls) { return H5F_ACC_CREAT; } +Java_hdf_hdf5lib_HDF5Constants_H5F_1ACC_1CREAT(JNIEnv *env, jclass cls) +{ + return H5F_ACC_CREAT; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1ACC_1EXCL(JNIEnv *env, jclass cls) { return H5F_ACC_EXCL; } +Java_hdf_hdf5lib_HDF5Constants_H5F_1ACC_1EXCL(JNIEnv *env, jclass cls) +{ + return H5F_ACC_EXCL; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1ACC_1RDONLY(JNIEnv *env, jclass cls) { return H5F_ACC_RDONLY; } +Java_hdf_hdf5lib_HDF5Constants_H5F_1ACC_1RDONLY(JNIEnv *env, jclass cls) +{ + return H5F_ACC_RDONLY; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1ACC_1RDWR(JNIEnv *env, jclass cls) { return H5F_ACC_RDWR; } +Java_hdf_hdf5lib_HDF5Constants_H5F_1ACC_1RDWR(JNIEnv *env, jclass cls) +{ + return H5F_ACC_RDWR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1ACC_1TRUNC(JNIEnv *env, jclass cls) { return H5F_ACC_TRUNC; } +Java_hdf_hdf5lib_HDF5Constants_H5F_1ACC_1TRUNC(JNIEnv *env, jclass cls) +{ + return H5F_ACC_TRUNC; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1ACC_1DEFAULT(JNIEnv *env, jclass cls) { return H5F_ACC_DEFAULT; } +Java_hdf_hdf5lib_HDF5Constants_H5F_1ACC_1DEFAULT(JNIEnv *env, jclass cls) +{ + return H5F_ACC_DEFAULT; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1ACC_1SWMR_1READ(JNIEnv *env, jclass cls) { return H5F_ACC_SWMR_READ; } +Java_hdf_hdf5lib_HDF5Constants_H5F_1ACC_1SWMR_1READ(JNIEnv *env, jclass cls) +{ + return H5F_ACC_SWMR_READ; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1ACC_1SWMR_1WRITE(JNIEnv *env, jclass cls) { return H5F_ACC_SWMR_WRITE; } -#pragma GCC diagnostic pop +Java_hdf_hdf5lib_HDF5Constants_H5F_1ACC_1SWMR_1WRITE(JNIEnv *env, jclass cls) +{ + return H5F_ACC_SWMR_WRITE; +} +H5_GCC_CLANG_DIAG_ON("sign-conversion") JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1CLOSE_1DEFAULT(JNIEnv *env, jclass cls) { return H5F_CLOSE_DEFAULT; } +Java_hdf_hdf5lib_HDF5Constants_H5F_1CLOSE_1DEFAULT(JNIEnv *env, jclass cls) +{ + return H5F_CLOSE_DEFAULT; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1CLOSE_1SEMI(JNIEnv *env, jclass cls) { return H5F_CLOSE_SEMI; } +Java_hdf_hdf5lib_HDF5Constants_H5F_1CLOSE_1SEMI(JNIEnv *env, jclass cls) +{ + return H5F_CLOSE_SEMI; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1CLOSE_1STRONG(JNIEnv *env, jclass cls) { return H5F_CLOSE_STRONG; } +Java_hdf_hdf5lib_HDF5Constants_H5F_1CLOSE_1STRONG(JNIEnv *env, jclass cls) +{ + return H5F_CLOSE_STRONG; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1CLOSE_1WEAK(JNIEnv *env, jclass cls) { return H5F_CLOSE_WEAK; } +Java_hdf_hdf5lib_HDF5Constants_H5F_1CLOSE_1WEAK(JNIEnv *env, jclass cls) +{ + return H5F_CLOSE_WEAK; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1LIBVER_1ERROR(JNIEnv *env, jclass cls){return H5F_LIBVER_ERROR;} +Java_hdf_hdf5lib_HDF5Constants_H5F_1LIBVER_1ERROR(JNIEnv *env, jclass cls) +{ + return H5F_LIBVER_ERROR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1LIBVER_1EARLIEST(JNIEnv *env, jclass cls){return H5F_LIBVER_EARLIEST;} +Java_hdf_hdf5lib_HDF5Constants_H5F_1LIBVER_1EARLIEST(JNIEnv *env, jclass cls) +{ + return H5F_LIBVER_EARLIEST; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1LIBVER_1V18(JNIEnv *env, jclass cls){return H5F_LIBVER_V18;} +Java_hdf_hdf5lib_HDF5Constants_H5F_1LIBVER_1V18(JNIEnv *env, jclass cls) +{ + return H5F_LIBVER_V18; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1LIBVER_1V110(JNIEnv *env, jclass cls){return H5F_LIBVER_V110;} +Java_hdf_hdf5lib_HDF5Constants_H5F_1LIBVER_1V110(JNIEnv *env, jclass cls) +{ + return H5F_LIBVER_V110; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1LIBVER_1V112(JNIEnv *env, jclass cls){return H5F_LIBVER_V112;} +Java_hdf_hdf5lib_HDF5Constants_H5F_1LIBVER_1V112(JNIEnv *env, jclass cls) +{ + return H5F_LIBVER_V112; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1LIBVER_1NBOUNDS(JNIEnv *env, jclass cls){return H5F_LIBVER_NBOUNDS;} +Java_hdf_hdf5lib_HDF5Constants_H5F_1LIBVER_1V114(JNIEnv *env, jclass cls) +{ + return H5F_LIBVER_V114; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1LIBVER_1LATEST(JNIEnv *env, jclass cls){return H5F_LIBVER_LATEST;} +Java_hdf_hdf5lib_HDF5Constants_H5F_1LIBVER_1NBOUNDS(JNIEnv *env, jclass cls) +{ + return H5F_LIBVER_NBOUNDS; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1OBJ_1ALL(JNIEnv *env, jclass cls) { return H5F_OBJ_ALL; } +Java_hdf_hdf5lib_HDF5Constants_H5F_1LIBVER_1LATEST(JNIEnv *env, jclass cls) +{ + return H5F_LIBVER_LATEST; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1OBJ_1ATTR(JNIEnv *env, jclass cls) { return H5F_OBJ_ATTR; } +Java_hdf_hdf5lib_HDF5Constants_H5F_1OBJ_1ALL(JNIEnv *env, jclass cls) +{ + return H5F_OBJ_ALL; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1OBJ_1DATASET(JNIEnv *env, jclass cls) { return H5F_OBJ_DATASET; } +Java_hdf_hdf5lib_HDF5Constants_H5F_1OBJ_1ATTR(JNIEnv *env, jclass cls) +{ + return H5F_OBJ_ATTR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1OBJ_1DATATYPE(JNIEnv *env, jclass cls) { return H5F_OBJ_DATATYPE; } +Java_hdf_hdf5lib_HDF5Constants_H5F_1OBJ_1DATASET(JNIEnv *env, jclass cls) +{ + return H5F_OBJ_DATASET; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1OBJ_1FILE(JNIEnv *env, jclass cls) { return H5F_OBJ_FILE; } +Java_hdf_hdf5lib_HDF5Constants_H5F_1OBJ_1DATATYPE(JNIEnv *env, jclass cls) +{ + return H5F_OBJ_DATATYPE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1OBJ_1GROUP(JNIEnv *env, jclass cls) { return H5F_OBJ_GROUP; } +Java_hdf_hdf5lib_HDF5Constants_H5F_1OBJ_1FILE(JNIEnv *env, jclass cls) +{ + return H5F_OBJ_FILE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1OBJ_1LOCAL(JNIEnv *env, jclass cls) { return H5F_OBJ_LOCAL; } +Java_hdf_hdf5lib_HDF5Constants_H5F_1OBJ_1GROUP(JNIEnv *env, jclass cls) +{ + return H5F_OBJ_GROUP; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1SCOPE_1GLOBAL(JNIEnv *env, jclass cls) { return H5F_SCOPE_GLOBAL; } +Java_hdf_hdf5lib_HDF5Constants_H5F_1OBJ_1LOCAL(JNIEnv *env, jclass cls) +{ + return H5F_OBJ_LOCAL; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1SCOPE_1LOCAL(JNIEnv *env, jclass cls) { return H5F_SCOPE_LOCAL; } +Java_hdf_hdf5lib_HDF5Constants_H5F_1SCOPE_1GLOBAL(JNIEnv *env, jclass cls) +{ + return H5F_SCOPE_GLOBAL; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1UNLIMITED(JNIEnv *env, jclass cls) { return (jint)H5F_UNLIMITED; } +Java_hdf_hdf5lib_HDF5Constants_H5F_1SCOPE_1LOCAL(JNIEnv *env, jclass cls) +{ + return H5F_SCOPE_LOCAL; +} +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5F_1UNLIMITED(JNIEnv *env, jclass cls) +{ + return (jint)H5F_UNLIMITED; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1FSPACE_1STRATEGY_1FSM_1AGGR(JNIEnv *env, jclass cls) { return H5F_FSPACE_STRATEGY_FSM_AGGR; } +Java_hdf_hdf5lib_HDF5Constants_H5F_1FSPACE_1STRATEGY_1FSM_1AGGR(JNIEnv *env, jclass cls) +{ + return H5F_FSPACE_STRATEGY_FSM_AGGR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1FSPACE_1STRATEGY_1AGGR(JNIEnv *env, jclass cls) { return H5F_FSPACE_STRATEGY_AGGR; } +Java_hdf_hdf5lib_HDF5Constants_H5F_1FSPACE_1STRATEGY_1AGGR(JNIEnv *env, jclass cls) +{ + return H5F_FSPACE_STRATEGY_AGGR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1FSPACE_1STRATEGY_1PAGE(JNIEnv *env, jclass cls) { return H5F_FSPACE_STRATEGY_PAGE; } +Java_hdf_hdf5lib_HDF5Constants_H5F_1FSPACE_1STRATEGY_1PAGE(JNIEnv *env, jclass cls) +{ + return H5F_FSPACE_STRATEGY_PAGE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1FSPACE_1STRATEGY_1NONE(JNIEnv *env, jclass cls) { return H5F_FSPACE_STRATEGY_NONE; } +Java_hdf_hdf5lib_HDF5Constants_H5F_1FSPACE_1STRATEGY_1NONE(JNIEnv *env, jclass cls) +{ + return H5F_FSPACE_STRATEGY_NONE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5F_1FSPACE_1STRATEGY_1NTYPES(JNIEnv *env, jclass cls) { return H5F_FSPACE_STRATEGY_NTYPES; } +Java_hdf_hdf5lib_HDF5Constants_H5F_1FSPACE_1STRATEGY_1NTYPES(JNIEnv *env, jclass cls) +{ + return H5F_FSPACE_STRATEGY_NTYPES; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1CORE(JNIEnv *env, jclass cls) { return H5FD_CORE; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1CORE(JNIEnv *env, jclass cls) +{ + return H5FD_CORE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1DIRECT(JNIEnv *env, jclass cls) { +Java_hdf_hdf5lib_HDF5Constants_H5FD_1DIRECT(JNIEnv *env, jclass cls) +{ #ifdef H5_HAVE_DIRECT return H5FD_DIRECT; #else - return -1; + return H5I_INVALID_HID; #endif } JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1FAMILY(JNIEnv *env, jclass cls) { return H5FD_FAMILY; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1FAMILY(JNIEnv *env, jclass cls) +{ + return H5FD_FAMILY; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1HDFS(JNIEnv *env, jclass cls) { +Java_hdf_hdf5lib_HDF5Constants_H5FD_1HDFS(JNIEnv *env, jclass cls) +{ #ifdef H5_HAVE_LIBHDFS return H5FD_HDFS; #else - return -1; + return H5I_INVALID_HID; #endif } JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG(JNIEnv *env, jclass cls) { return H5FD_LOG; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG(JNIEnv *env, jclass cls) +{ + return H5FD_LOG; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1MPIO(JNIEnv *env, jclass cls) { return H5FD_MPIO; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1MPIO(JNIEnv *env, jclass cls) +{ + return H5FD_MPIO; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1MULTI(JNIEnv *env, jclass cls) { return H5FD_MULTI; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1MULTI(JNIEnv *env, jclass cls) +{ + return H5FD_MULTI; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1SEC2(JNIEnv *env, jclass cls) { return H5FD_SEC2; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1SEC2(JNIEnv *env, jclass cls) +{ + return H5FD_SEC2; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1ROS3(JNIEnv *env, jclass cls) { +Java_hdf_hdf5lib_HDF5Constants_H5FD_1ROS3(JNIEnv *env, jclass cls) +{ #ifdef H5_HAVE_ROS3_VFD return H5FD_ROS3; #else - return -1; + return H5I_INVALID_HID; #endif } JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1STDIO(JNIEnv *env, jclass cls) { return H5FD_STDIO; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1STDIO(JNIEnv *env, jclass cls) +{ + return H5FD_STDIO; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1WINDOWS(JNIEnv *env, jclass cls) { +Java_hdf_hdf5lib_HDF5Constants_H5FD_1WINDOWS(JNIEnv *env, jclass cls) +{ #ifdef H5_HAVE_WINDOWS return H5FD_DIRECT; #else - return -1; + return H5I_INVALID_HID; #endif } JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1LOC_1READ(JNIEnv *env, jclass cls) { return H5FD_LOG_LOC_READ; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1LOC_1READ(JNIEnv *env, jclass cls) +{ + return H5FD_LOG_LOC_READ; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1LOC_1WRITE(JNIEnv *env, jclass cls) { return H5FD_LOG_LOC_WRITE; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1LOC_1WRITE(JNIEnv *env, jclass cls) +{ + return H5FD_LOG_LOC_WRITE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1LOC_1SEEK(JNIEnv *env, jclass cls) { return H5FD_LOG_LOC_SEEK; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1LOC_1SEEK(JNIEnv *env, jclass cls) +{ + return H5FD_LOG_LOC_SEEK; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1LOC_1IO(JNIEnv *env, jclass cls) { return H5FD_LOG_LOC_IO; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1LOC_1IO(JNIEnv *env, jclass cls) +{ + return H5FD_LOG_LOC_IO; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1FILE_1READ(JNIEnv *env, jclass cls) { return H5FD_LOG_FILE_READ; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1FILE_1READ(JNIEnv *env, jclass cls) +{ + return H5FD_LOG_FILE_READ; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1FILE_1WRITE(JNIEnv *env, jclass cls) { return H5FD_LOG_FILE_WRITE; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1FILE_1WRITE(JNIEnv *env, jclass cls) +{ + return H5FD_LOG_FILE_WRITE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1FILE_1IO(JNIEnv *env, jclass cls) { return H5FD_LOG_FILE_IO; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1FILE_1IO(JNIEnv *env, jclass cls) +{ + return H5FD_LOG_FILE_IO; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1FLAVOR(JNIEnv *env, jclass cls) { return H5FD_LOG_FLAVOR; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1FLAVOR(JNIEnv *env, jclass cls) +{ + return H5FD_LOG_FLAVOR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1NUM_1READ(JNIEnv *env, jclass cls) { return H5FD_LOG_NUM_READ; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1NUM_1READ(JNIEnv *env, jclass cls) +{ + return H5FD_LOG_NUM_READ; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1NUM_1WRITE(JNIEnv *env, jclass cls) { return H5FD_LOG_NUM_WRITE; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1NUM_1WRITE(JNIEnv *env, jclass cls) +{ + return H5FD_LOG_NUM_WRITE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1NUM_1SEEK(JNIEnv *env, jclass cls) { return H5FD_LOG_NUM_SEEK; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1NUM_1SEEK(JNIEnv *env, jclass cls) +{ + return H5FD_LOG_NUM_SEEK; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1NUM_1TRUNCATE(JNIEnv *env, jclass cls) { return H5FD_LOG_NUM_TRUNCATE; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1NUM_1TRUNCATE(JNIEnv *env, jclass cls) +{ + return H5FD_LOG_NUM_TRUNCATE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1NUM_1IO(JNIEnv *env, jclass cls) { return H5FD_LOG_NUM_IO; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1NUM_1IO(JNIEnv *env, jclass cls) +{ + return H5FD_LOG_NUM_IO; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1TIME_1OPEN(JNIEnv *env, jclass cls) { return H5FD_LOG_TIME_OPEN; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1TIME_1OPEN(JNIEnv *env, jclass cls) +{ + return H5FD_LOG_TIME_OPEN; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1TIME_1STAT(JNIEnv *env, jclass cls) { return H5FD_LOG_TIME_STAT; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1TIME_1STAT(JNIEnv *env, jclass cls) +{ + return H5FD_LOG_TIME_STAT; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1TIME_1READ(JNIEnv *env, jclass cls) { return H5FD_LOG_TIME_READ; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1TIME_1READ(JNIEnv *env, jclass cls) +{ + return H5FD_LOG_TIME_READ; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1TIME_1WRITE(JNIEnv *env, jclass cls) { return H5FD_LOG_TIME_WRITE; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1TIME_1WRITE(JNIEnv *env, jclass cls) +{ + return H5FD_LOG_TIME_WRITE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1TIME_1SEEK(JNIEnv *env, jclass cls) { return H5FD_LOG_TIME_SEEK; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1TIME_1SEEK(JNIEnv *env, jclass cls) +{ + return H5FD_LOG_TIME_SEEK; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1TIME_1CLOSE(JNIEnv *env, jclass cls) { return H5FD_LOG_TIME_CLOSE; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1TIME_1CLOSE(JNIEnv *env, jclass cls) +{ + return H5FD_LOG_TIME_CLOSE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1TIME_1IO(JNIEnv *env, jclass cls) { return H5FD_LOG_TIME_IO; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1TIME_1IO(JNIEnv *env, jclass cls) +{ + return H5FD_LOG_TIME_IO; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1ALLOC(JNIEnv *env, jclass cls) { return H5FD_LOG_ALLOC; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1ALLOC(JNIEnv *env, jclass cls) +{ + return H5FD_LOG_ALLOC; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1ALL(JNIEnv *env, jclass cls) { return H5FD_LOG_ALL; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1LOG_1ALL(JNIEnv *env, jclass cls) +{ + return H5FD_LOG_ALL; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1NOLIST(JNIEnv *env, jclass cls) { return H5FD_MEM_NOLIST; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1NOLIST(JNIEnv *env, jclass cls) +{ + return H5FD_MEM_NOLIST; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1DEFAULT(JNIEnv *env, jclass cls) { return H5FD_MEM_DEFAULT; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1DEFAULT(JNIEnv *env, jclass cls) +{ + return H5FD_MEM_DEFAULT; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1SUPER(JNIEnv *env, jclass cls) { return H5FD_MEM_SUPER; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1SUPER(JNIEnv *env, jclass cls) +{ + return H5FD_MEM_SUPER; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1BTREE(JNIEnv *env, jclass cls) { return H5FD_MEM_BTREE; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1BTREE(JNIEnv *env, jclass cls) +{ + return H5FD_MEM_BTREE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1DRAW(JNIEnv *env, jclass cls) { return H5FD_MEM_DRAW; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1DRAW(JNIEnv *env, jclass cls) +{ + return H5FD_MEM_DRAW; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1GHEAP(JNIEnv *env, jclass cls) { return H5FD_MEM_GHEAP; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1GHEAP(JNIEnv *env, jclass cls) +{ + return H5FD_MEM_GHEAP; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1LHEAP(JNIEnv *env, jclass cls) { return H5FD_MEM_LHEAP; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1LHEAP(JNIEnv *env, jclass cls) +{ + return H5FD_MEM_LHEAP; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1OHDR(JNIEnv *env, jclass cls) { return H5FD_MEM_OHDR; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1OHDR(JNIEnv *env, jclass cls) +{ + return H5FD_MEM_OHDR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1NTYPES(JNIEnv *env, jclass cls) { return H5FD_MEM_NTYPES; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1NTYPES(JNIEnv *env, jclass cls) +{ + return H5FD_MEM_NTYPES; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1DEFAULT_1HADDR_1SIZE(JNIEnv *env, jclass cls) { return (hsize_t)(HADDR_MAX/H5FD_MEM_NTYPES); } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1DEFAULT_1HADDR_1SIZE(JNIEnv *env, jclass cls) +{ + return (hsize_t)(HADDR_MAX / H5FD_MEM_NTYPES); +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1DEFAULT_1SIZE(JNIEnv *env, jclass cls) { return (hsize_t)0; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1DEFAULT_1SIZE(JNIEnv *env, jclass cls) +{ + return (hsize_t)0; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1DEFAULT_1SUPER_1SIZE(JNIEnv *env, jclass cls) { return (hsize_t)0; } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1DEFAULT_1SUPER_1SIZE(JNIEnv *env, jclass cls) +{ + return (hsize_t)0; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1DEFAULT_1BTREE_1SIZE(JNIEnv *env, jclass cls) { return (hsize_t)(1 * (HADDR_MAX / (H5FD_MEM_NTYPES-1))); } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1DEFAULT_1BTREE_1SIZE(JNIEnv *env, jclass cls) +{ + return (hsize_t)(1 * (HADDR_MAX / (H5FD_MEM_NTYPES - 1))); +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1DEFAULT_1DRAW_1SIZE(JNIEnv *env, jclass cls) { return (hsize_t)(2 * (HADDR_MAX / (H5FD_MEM_NTYPES-1))); } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1DEFAULT_1DRAW_1SIZE(JNIEnv *env, jclass cls) +{ + return (hsize_t)(2 * (HADDR_MAX / (H5FD_MEM_NTYPES - 1))); +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1DEFAULT_1GHEAP_1SIZE(JNIEnv *env, jclass cls) { return (hsize_t)(3 * (HADDR_MAX / (H5FD_MEM_NTYPES-1))); } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1DEFAULT_1GHEAP_1SIZE(JNIEnv *env, jclass cls) +{ + return (hsize_t)(3 * (HADDR_MAX / (H5FD_MEM_NTYPES - 1))); +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1DEFAULT_1LHEAP_1SIZE(JNIEnv *env, jclass cls) { return (hsize_t)(4 * (HADDR_MAX / (H5FD_MEM_NTYPES-1))); } +Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1DEFAULT_1LHEAP_1SIZE(JNIEnv *env, jclass cls) +{ + return (hsize_t)(4 * (HADDR_MAX / (H5FD_MEM_NTYPES - 1))); +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1DEFAULT_1OHDR_1SIZE(JNIEnv *env, jclass cls) { return (hsize_t)(5 * (HADDR_MAX / (H5FD_MEM_NTYPES-1))); } - +Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1DEFAULT_1OHDR_1SIZE(JNIEnv *env, jclass cls) +{ + return (hsize_t)(5 * (HADDR_MAX / (H5FD_MEM_NTYPES - 1))); +} /* Symbols defined for compatibility with previous versions of the HDF5 API. * @@ -574,819 +1667,2066 @@ Java_hdf_hdf5lib_HDF5Constants_H5FD_1MEM_1DEFAULT_1OHDR_1SIZE(JNIEnv *env, jclas #ifndef H5_NO_DEPRECATED_SYMBOLS JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5G_1DATASET(JNIEnv *env, jclass cls) { return H5G_DATASET; } +Java_hdf_hdf5lib_HDF5Constants_H5G_1DATASET(JNIEnv *env, jclass cls) +{ + return H5G_DATASET; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5G_1GROUP(JNIEnv *env, jclass cls) { return H5G_GROUP; } +Java_hdf_hdf5lib_HDF5Constants_H5G_1GROUP(JNIEnv *env, jclass cls) +{ + return H5G_GROUP; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5G_1LINK(JNIEnv *env, jclass cls) { return H5G_LINK; } +Java_hdf_hdf5lib_HDF5Constants_H5G_1LINK(JNIEnv *env, jclass cls) +{ + return H5G_LINK; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5G_1UDLINK(JNIEnv *env, jclass cls) { return H5G_UDLINK; } +Java_hdf_hdf5lib_HDF5Constants_H5G_1UDLINK(JNIEnv *env, jclass cls) +{ + return H5G_UDLINK; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5G_1RESERVED_15(JNIEnv *env, jclass cls) { return H5G_RESERVED_5; } +Java_hdf_hdf5lib_HDF5Constants_H5G_1RESERVED_15(JNIEnv *env, jclass cls) +{ + return H5G_RESERVED_5; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5G_1RESERVED_16(JNIEnv *env, jclass cls) { return H5G_RESERVED_6; } +Java_hdf_hdf5lib_HDF5Constants_H5G_1RESERVED_16(JNIEnv *env, jclass cls) +{ + return H5G_RESERVED_6; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5G_1RESERVED_17(JNIEnv *env, jclass cls) { return H5G_RESERVED_7; } +Java_hdf_hdf5lib_HDF5Constants_H5G_1RESERVED_17(JNIEnv *env, jclass cls) +{ + return H5G_RESERVED_7; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5G_1TYPE(JNIEnv *env, jclass cls) { return H5G_TYPE; } +Java_hdf_hdf5lib_HDF5Constants_H5G_1TYPE(JNIEnv *env, jclass cls) +{ + return H5G_TYPE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5G_1UNKNOWN(JNIEnv *env, jclass cls) { return H5G_UNKNOWN; } +Java_hdf_hdf5lib_HDF5Constants_H5G_1UNKNOWN(JNIEnv *env, jclass cls) +{ + return H5G_UNKNOWN; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5G_1LINK_1ERROR(JNIEnv *env, jclass cls) { return H5G_LINK_ERROR; } +Java_hdf_hdf5lib_HDF5Constants_H5G_1LINK_1ERROR(JNIEnv *env, jclass cls) +{ + return H5G_LINK_ERROR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5G_1LINK_1HARD(JNIEnv *env, jclass cls) { return H5G_LINK_HARD; } +Java_hdf_hdf5lib_HDF5Constants_H5G_1LINK_1HARD(JNIEnv *env, jclass cls) +{ + return H5G_LINK_HARD; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5G_1LINK_1SOFT(JNIEnv *env, jclass cls) { return H5G_LINK_SOFT; } +Java_hdf_hdf5lib_HDF5Constants_H5G_1LINK_1SOFT(JNIEnv *env, jclass cls) +{ + return H5G_LINK_SOFT; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5G_1NLIBTYPES(JNIEnv *env, jclass cls) { return H5G_NLIBTYPES; } +Java_hdf_hdf5lib_HDF5Constants_H5G_1NLIBTYPES(JNIEnv *env, jclass cls) +{ + return H5G_NLIBTYPES; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5G_1NTYPES(JNIEnv *env, jclass cls) { return H5G_NTYPES; } +Java_hdf_hdf5lib_HDF5Constants_H5G_1NTYPES(JNIEnv *env, jclass cls) +{ + return H5G_NTYPES; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5G_1NUSERTYPES(JNIEnv *env, jclass cls) { return H5G_NUSERTYPES; } +Java_hdf_hdf5lib_HDF5Constants_H5G_1NUSERTYPES(JNIEnv *env, jclass cls) +{ + return H5G_NUSERTYPES; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5G_1SAME_1LOC(JNIEnv *env, jclass cls) { return H5G_SAME_LOC; } +Java_hdf_hdf5lib_HDF5Constants_H5G_1SAME_1LOC(JNIEnv *env, jclass cls) +{ + return H5G_SAME_LOC; +} #endif /* H5_NO_DEPRECATED_SYMBOLS */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5G_1STORAGE_1TYPE_1UNKNOWN(JNIEnv *env, jclass cls){ return H5G_STORAGE_TYPE_UNKNOWN; } +Java_hdf_hdf5lib_HDF5Constants_H5G_1STORAGE_1TYPE_1UNKNOWN(JNIEnv *env, jclass cls) +{ + return H5G_STORAGE_TYPE_UNKNOWN; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5G_1STORAGE_1TYPE_1SYMBOL_1TABLE(JNIEnv *env, jclass cls){ return H5G_STORAGE_TYPE_SYMBOL_TABLE; } +Java_hdf_hdf5lib_HDF5Constants_H5G_1STORAGE_1TYPE_1SYMBOL_1TABLE(JNIEnv *env, jclass cls) +{ + return H5G_STORAGE_TYPE_SYMBOL_TABLE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5G_1STORAGE_1TYPE_1COMPACT(JNIEnv *env, jclass cls){ return H5G_STORAGE_TYPE_COMPACT; } +Java_hdf_hdf5lib_HDF5Constants_H5G_1STORAGE_1TYPE_1COMPACT(JNIEnv *env, jclass cls) +{ + return H5G_STORAGE_TYPE_COMPACT; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5G_1STORAGE_1TYPE_1DENSE(JNIEnv *env, jclass cls){ return H5G_STORAGE_TYPE_DENSE; } +Java_hdf_hdf5lib_HDF5Constants_H5G_1STORAGE_1TYPE_1DENSE(JNIEnv *env, jclass cls) +{ + return H5G_STORAGE_TYPE_DENSE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5I_1UNINIT(JNIEnv *env, jclass cls) { return H5I_UNINIT; } +Java_hdf_hdf5lib_HDF5Constants_H5I_1UNINIT(JNIEnv *env, jclass cls) +{ + return H5I_UNINIT; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5I_1BADID(JNIEnv *env, jclass cls) { return H5I_BADID; } +Java_hdf_hdf5lib_HDF5Constants_H5I_1BADID(JNIEnv *env, jclass cls) +{ + return H5I_BADID; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5I_1FILE(JNIEnv *env, jclass cls) { return H5I_FILE; } +Java_hdf_hdf5lib_HDF5Constants_H5I_1FILE(JNIEnv *env, jclass cls) +{ + return H5I_FILE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5I_1GROUP(JNIEnv *env, jclass cls) { return H5I_GROUP; } +Java_hdf_hdf5lib_HDF5Constants_H5I_1GROUP(JNIEnv *env, jclass cls) +{ + return H5I_GROUP; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5I_1DATATYPE(JNIEnv *env, jclass cls) { return H5I_DATATYPE; } +Java_hdf_hdf5lib_HDF5Constants_H5I_1DATATYPE(JNIEnv *env, jclass cls) +{ + return H5I_DATATYPE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5I_1DATASPACE(JNIEnv *env, jclass cls) { return H5I_DATASPACE; } +Java_hdf_hdf5lib_HDF5Constants_H5I_1DATASPACE(JNIEnv *env, jclass cls) +{ + return H5I_DATASPACE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5I_1DATASET(JNIEnv *env, jclass cls) { return H5I_DATASET; } +Java_hdf_hdf5lib_HDF5Constants_H5I_1DATASET(JNIEnv *env, jclass cls) +{ + return H5I_DATASET; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5I_1ATTR(JNIEnv *env, jclass cls) { return H5I_ATTR; } +Java_hdf_hdf5lib_HDF5Constants_H5I_1ATTR(JNIEnv *env, jclass cls) +{ + return H5I_ATTR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5I_1VFL(JNIEnv *env, jclass cls) { return H5I_VFL; } +Java_hdf_hdf5lib_HDF5Constants_H5I_1VFL(JNIEnv *env, jclass cls) +{ + return H5I_VFL; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5I_1VOL(JNIEnv *env, jclass cls) { return H5I_VOL; } +Java_hdf_hdf5lib_HDF5Constants_H5I_1VOL(JNIEnv *env, jclass cls) +{ + return H5I_VOL; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5I_1INVALID_1HID(JNIEnv *env, jclass cls) { return H5I_INVALID_HID; } +Java_hdf_hdf5lib_HDF5Constants_H5I_1INVALID_1HID(JNIEnv *env, jclass cls) +{ + return H5I_INVALID_HID; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5I_1GENPROP_1CLS(JNIEnv *env, jclass cls) { return H5I_GENPROP_CLS; } +Java_hdf_hdf5lib_HDF5Constants_H5I_1GENPROP_1CLS(JNIEnv *env, jclass cls) +{ + return H5I_GENPROP_CLS; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5I_1GENPROP_1LST(JNIEnv *env, jclass cls) { return H5I_GENPROP_LST; } +Java_hdf_hdf5lib_HDF5Constants_H5I_1GENPROP_1LST(JNIEnv *env, jclass cls) +{ + return H5I_GENPROP_LST; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5I_1ERROR_1CLASS(JNIEnv *env, jclass cls) { return H5I_ERROR_CLASS; } +Java_hdf_hdf5lib_HDF5Constants_H5I_1ERROR_1CLASS(JNIEnv *env, jclass cls) +{ + return H5I_ERROR_CLASS; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5I_1ERROR_1MSG(JNIEnv *env, jclass cls) { return H5I_ERROR_MSG; } +Java_hdf_hdf5lib_HDF5Constants_H5I_1ERROR_1MSG(JNIEnv *env, jclass cls) +{ + return H5I_ERROR_MSG; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5I_1ERROR_1STACK(JNIEnv *env, jclass cls) { return H5I_ERROR_STACK; } +Java_hdf_hdf5lib_HDF5Constants_H5I_1ERROR_1STACK(JNIEnv *env, jclass cls) +{ + return H5I_ERROR_STACK; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5I_1NTYPES(JNIEnv *env, jclass cls) { return H5I_NTYPES; } +Java_hdf_hdf5lib_HDF5Constants_H5I_1NTYPES(JNIEnv *env, jclass cls) +{ + return H5I_NTYPES; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5L_1TYPE_1ERROR(JNIEnv *env, jclass cls) { return H5L_TYPE_ERROR; } +Java_hdf_hdf5lib_HDF5Constants_H5L_1TYPE_1ERROR(JNIEnv *env, jclass cls) +{ + return H5L_TYPE_ERROR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5L_1TYPE_1HARD(JNIEnv *env, jclass cls) { return H5L_TYPE_HARD; } +Java_hdf_hdf5lib_HDF5Constants_H5L_1TYPE_1HARD(JNIEnv *env, jclass cls) +{ + return H5L_TYPE_HARD; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5L_1TYPE_1SOFT(JNIEnv *env, jclass cls) { return H5L_TYPE_SOFT; } +Java_hdf_hdf5lib_HDF5Constants_H5L_1TYPE_1SOFT(JNIEnv *env, jclass cls) +{ + return H5L_TYPE_SOFT; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5L_1TYPE_1EXTERNAL(JNIEnv *env, jclass cls) { return H5L_TYPE_EXTERNAL; } +Java_hdf_hdf5lib_HDF5Constants_H5L_1TYPE_1EXTERNAL(JNIEnv *env, jclass cls) +{ + return H5L_TYPE_EXTERNAL; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5L_1TYPE_1MAX(JNIEnv *env, jclass cls) { return H5L_TYPE_MAX; } +Java_hdf_hdf5lib_HDF5Constants_H5L_1TYPE_1MAX(JNIEnv *env, jclass cls) +{ + return H5L_TYPE_MAX; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5O_1COPY_1SHALLOW_1HIERARCHY_1FLAG(JNIEnv *env, jclass cls){return H5O_COPY_SHALLOW_HIERARCHY_FLAG; } +Java_hdf_hdf5lib_HDF5Constants_H5O_1COPY_1SHALLOW_1HIERARCHY_1FLAG(JNIEnv *env, jclass cls) +{ + return H5O_COPY_SHALLOW_HIERARCHY_FLAG; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5O_1COPY_1EXPAND_1SOFT_1LINK_1FLAG(JNIEnv *env, jclass cls){return H5O_COPY_EXPAND_SOFT_LINK_FLAG; } +Java_hdf_hdf5lib_HDF5Constants_H5O_1COPY_1EXPAND_1SOFT_1LINK_1FLAG(JNIEnv *env, jclass cls) +{ + return H5O_COPY_EXPAND_SOFT_LINK_FLAG; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5O_1COPY_1EXPAND_1EXT_1LINK_1FLAG(JNIEnv *env, jclass cls){return H5O_COPY_EXPAND_EXT_LINK_FLAG; } +Java_hdf_hdf5lib_HDF5Constants_H5O_1COPY_1EXPAND_1EXT_1LINK_1FLAG(JNIEnv *env, jclass cls) +{ + return H5O_COPY_EXPAND_EXT_LINK_FLAG; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5O_1COPY_1EXPAND_1REFERENCE_1FLAG(JNIEnv *env, jclass cls){return H5O_COPY_EXPAND_REFERENCE_FLAG; } +Java_hdf_hdf5lib_HDF5Constants_H5O_1COPY_1EXPAND_1REFERENCE_1FLAG(JNIEnv *env, jclass cls) +{ + return H5O_COPY_EXPAND_REFERENCE_FLAG; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5O_1COPY_1WITHOUT_1ATTR_1FLAG(JNIEnv *env, jclass cls){return H5O_COPY_WITHOUT_ATTR_FLAG; } +Java_hdf_hdf5lib_HDF5Constants_H5O_1COPY_1WITHOUT_1ATTR_1FLAG(JNIEnv *env, jclass cls) +{ + return H5O_COPY_WITHOUT_ATTR_FLAG; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5O_1COPY_1PRESERVE_1NULL_1FLAG(JNIEnv *env, jclass cls){return H5O_COPY_PRESERVE_NULL_FLAG; } +Java_hdf_hdf5lib_HDF5Constants_H5O_1COPY_1PRESERVE_1NULL_1FLAG(JNIEnv *env, jclass cls) +{ + return H5O_COPY_PRESERVE_NULL_FLAG; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5O_1INFO_1BASIC(JNIEnv *env, jclass cls) { return H5O_INFO_BASIC; } +Java_hdf_hdf5lib_HDF5Constants_H5O_1INFO_1BASIC(JNIEnv *env, jclass cls) +{ + return H5O_INFO_BASIC; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5O_1INFO_1TIME(JNIEnv *env, jclass cls) { return H5O_INFO_TIME; } +Java_hdf_hdf5lib_HDF5Constants_H5O_1INFO_1TIME(JNIEnv *env, jclass cls) +{ + return H5O_INFO_TIME; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5O_1INFO_1NUM_1ATTRS(JNIEnv *env, jclass cls) { return H5O_INFO_NUM_ATTRS; } +Java_hdf_hdf5lib_HDF5Constants_H5O_1INFO_1NUM_1ATTRS(JNIEnv *env, jclass cls) +{ + return H5O_INFO_NUM_ATTRS; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5O_1INFO_1HDR(JNIEnv *env, jclass cls) { return H5O_INFO_HDR; } +Java_hdf_hdf5lib_HDF5Constants_H5O_1INFO_1ALL(JNIEnv *env, jclass cls) +{ + return H5O_INFO_ALL; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5O_1INFO_1META_1SIZE(JNIEnv *env, jclass cls) { return H5O_INFO_META_SIZE; } +Java_hdf_hdf5lib_HDF5Constants_H5O_1NATIVE_1INFO_1HDR(JNIEnv *env, jclass cls) +{ + return H5O_NATIVE_INFO_HDR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5O_1INFO_1ALL(JNIEnv *env, jclass cls) { return H5O_INFO_ALL; } +Java_hdf_hdf5lib_HDF5Constants_H5O_1NATIVE_1INFO_1META_1SIZE(JNIEnv *env, jclass cls) +{ + return H5O_NATIVE_INFO_META_SIZE; +} +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5O_1NATIVE_1INFO_1ALL(JNIEnv *env, jclass cls) +{ + return H5O_NATIVE_INFO_ALL; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5O_1SHMESG_1NONE_1FLAG(JNIEnv *env, jclass cls){return H5O_SHMESG_NONE_FLAG; } +Java_hdf_hdf5lib_HDF5Constants_H5O_1SHMESG_1NONE_1FLAG(JNIEnv *env, jclass cls) +{ + return H5O_SHMESG_NONE_FLAG; +} +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5O_1SHMESG_1SDSPACE_1FLAG(JNIEnv *env, jclass cls) +{ + return H5O_SHMESG_SDSPACE_FLAG; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5O_1SHMESG_1SDSPACE_1FLAG(JNIEnv *env, jclass cls){return H5O_SHMESG_SDSPACE_FLAG; } +Java_hdf_hdf5lib_HDF5Constants_H5O_1SHMESG_1DTYPE_1FLAG(JNIEnv *env, jclass cls) +{ + return H5O_SHMESG_DTYPE_FLAG; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5O_1SHMESG_1DTYPE_1FLAG(JNIEnv *env, jclass cls){return H5O_SHMESG_DTYPE_FLAG; } +Java_hdf_hdf5lib_HDF5Constants_H5O_1SHMESG_1FILL_1FLAG(JNIEnv *env, jclass cls) +{ + return H5O_SHMESG_FILL_FLAG; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5O_1SHMESG_1FILL_1FLAG(JNIEnv *env, jclass cls){return H5O_SHMESG_FILL_FLAG; } +Java_hdf_hdf5lib_HDF5Constants_H5O_1SHMESG_1PLINE_1FLAG(JNIEnv *env, jclass cls) +{ + return H5O_SHMESG_PLINE_FLAG; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5O_1SHMESG_1PLINE_1FLAG(JNIEnv *env, jclass cls){return H5O_SHMESG_PLINE_FLAG; } +Java_hdf_hdf5lib_HDF5Constants_H5O_1SHMESG_1ATTR_1FLAG(JNIEnv *env, jclass cls) +{ + return H5O_SHMESG_ATTR_FLAG; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5O_1SHMESG_1ATTR_1FLAG(JNIEnv *env, jclass cls){return H5O_SHMESG_ATTR_FLAG; } +Java_hdf_hdf5lib_HDF5Constants_H5O_1SHMESG_1ALL_1FLAG(JNIEnv *env, jclass cls) +{ + return H5O_SHMESG_ALL_FLAG; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5O_1SHMESG_1ALL_1FLAG(JNIEnv *env, jclass cls){return H5O_SHMESG_ALL_FLAG; } +Java_hdf_hdf5lib_HDF5Constants_H5O_1TYPE_1UNKNOWN(JNIEnv *env, jclass cls) +{ + return H5O_TYPE_UNKNOWN; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5O_1TYPE_1UNKNOWN(JNIEnv *env, jclass cls) { return H5O_TYPE_UNKNOWN; } +Java_hdf_hdf5lib_HDF5Constants_H5O_1TYPE_1GROUP(JNIEnv *env, jclass cls) +{ + return H5O_TYPE_GROUP; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5O_1TYPE_1GROUP(JNIEnv *env, jclass cls) { return H5O_TYPE_GROUP; } +Java_hdf_hdf5lib_HDF5Constants_H5O_1TYPE_1DATASET(JNIEnv *env, jclass cls) +{ + return H5O_TYPE_DATASET; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5O_1TYPE_1DATASET(JNIEnv *env, jclass cls) { return H5O_TYPE_DATASET; } +Java_hdf_hdf5lib_HDF5Constants_H5O_1TYPE_1NAMED_1DATATYPE(JNIEnv *env, jclass cls) +{ + return H5O_TYPE_NAMED_DATATYPE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5O_1TYPE_1NAMED_1DATATYPE(JNIEnv *env, jclass cls) { return H5O_TYPE_NAMED_DATATYPE; } +Java_hdf_hdf5lib_HDF5Constants_H5O_1TYPE_1NTYPES(JNIEnv *env, jclass cls) +{ + return H5O_TYPE_NTYPES; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5O_1TYPE_1NTYPES(JNIEnv *env, jclass cls) { return H5O_TYPE_NTYPES; } +Java_hdf_hdf5lib_HDF5Constants_H5O_1MAX_1TOKEN_1SIZE(JNIEnv *env, jclass cls) +{ + return H5O_MAX_TOKEN_SIZE; +} +JNIEXPORT jobject JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5O_1TOKEN_1UNDEF(JNIEnv *env, jclass cls) +{ + H5O_token_t undef_token = H5O_TOKEN_UNDEF; + + /* TODO: Can be optimized by keeping a global reference to the undefined token class */ + return create_H5O_token_t(env, &undef_token, FALSE); +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1ROOT(JNIEnv *env, jclass cls){return H5P_ROOT;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1ROOT(JNIEnv *env, jclass cls) +{ + return H5P_ROOT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1OBJECT_1CREATE(JNIEnv *env, jclass cls){return H5P_OBJECT_CREATE;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1OBJECT_1CREATE(JNIEnv *env, jclass cls) +{ + return H5P_OBJECT_CREATE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1FILE_1CREATE(JNIEnv *env, jclass cls){return H5P_FILE_CREATE;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1FILE_1CREATE(JNIEnv *env, jclass cls) +{ + return H5P_FILE_CREATE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1FILE_1ACCESS(JNIEnv *env, jclass cls){return H5P_FILE_ACCESS;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1FILE_1ACCESS(JNIEnv *env, jclass cls) +{ + return H5P_FILE_ACCESS; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1DATASET_1CREATE(JNIEnv *env, jclass cls){return H5P_DATASET_CREATE;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1DATASET_1CREATE(JNIEnv *env, jclass cls) +{ + return H5P_DATASET_CREATE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1DATASET_1ACCESS(JNIEnv *env, jclass cls){return H5P_DATASET_ACCESS;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1DATASET_1ACCESS(JNIEnv *env, jclass cls) +{ + return H5P_DATASET_ACCESS; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1DATASET_1XFER(JNIEnv *env, jclass cls){return H5P_DATASET_XFER;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1DATASET_1XFER(JNIEnv *env, jclass cls) +{ + return H5P_DATASET_XFER; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1FILE_1MOUNT(JNIEnv *env, jclass cls){return H5P_FILE_MOUNT;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1FILE_1MOUNT(JNIEnv *env, jclass cls) +{ + return H5P_FILE_MOUNT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1GROUP_1CREATE(JNIEnv *env, jclass cls){return H5P_GROUP_CREATE;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1GROUP_1CREATE(JNIEnv *env, jclass cls) +{ + return H5P_GROUP_CREATE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1GROUP_1ACCESS(JNIEnv *env, jclass cls){return H5P_GROUP_ACCESS;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1GROUP_1ACCESS(JNIEnv *env, jclass cls) +{ + return H5P_GROUP_ACCESS; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1DATATYPE_1CREATE(JNIEnv *env, jclass cls){return H5P_DATATYPE_CREATE;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1DATATYPE_1CREATE(JNIEnv *env, jclass cls) +{ + return H5P_DATATYPE_CREATE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1DATATYPE_1ACCESS(JNIEnv *env, jclass cls){return H5P_DATATYPE_ACCESS;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1DATATYPE_1ACCESS(JNIEnv *env, jclass cls) +{ + return H5P_DATATYPE_ACCESS; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1STRING_1CREATE(JNIEnv *env, jclass cls){return H5P_STRING_CREATE;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1STRING_1CREATE(JNIEnv *env, jclass cls) +{ + return H5P_STRING_CREATE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1ATTRIBUTE_1CREATE(JNIEnv *env, jclass cls){return H5P_ATTRIBUTE_CREATE;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1ATTRIBUTE_1CREATE(JNIEnv *env, jclass cls) +{ + return H5P_ATTRIBUTE_CREATE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1ATTRIBUTE_1ACCESS(JNIEnv *env, jclass cls){return H5P_ATTRIBUTE_ACCESS;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1ATTRIBUTE_1ACCESS(JNIEnv *env, jclass cls) +{ + return H5P_ATTRIBUTE_ACCESS; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1OBJECT_1COPY(JNIEnv *env, jclass cls){return H5P_OBJECT_COPY;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1OBJECT_1COPY(JNIEnv *env, jclass cls) +{ + return H5P_OBJECT_COPY; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1LINK_1CREATE(JNIEnv *env, jclass cls){return H5P_LINK_CREATE;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1LINK_1CREATE(JNIEnv *env, jclass cls) +{ + return H5P_LINK_CREATE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1LINK_1ACCESS(JNIEnv *env, jclass cls){return H5P_LINK_ACCESS;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1LINK_1ACCESS(JNIEnv *env, jclass cls) +{ + return H5P_LINK_ACCESS; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1VOL_1INITIALIZE(JNIEnv *env, jclass cls){return H5P_VOL_INITIALIZE;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1VOL_1INITIALIZE(JNIEnv *env, jclass cls) +{ + return H5P_VOL_INITIALIZE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1FILE_1CREATE_1DEFAULT(JNIEnv *env, jclass cls){return H5P_FILE_CREATE_DEFAULT;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1FILE_1CREATE_1DEFAULT(JNIEnv *env, jclass cls) +{ + return H5P_FILE_CREATE_DEFAULT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1FILE_1ACCESS_1DEFAULT(JNIEnv *env, jclass cls){return H5P_FILE_ACCESS_DEFAULT;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1FILE_1ACCESS_1DEFAULT(JNIEnv *env, jclass cls) +{ + return H5P_FILE_ACCESS_DEFAULT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1DATASET_1CREATE_1DEFAULT(JNIEnv *env, jclass cls){return H5P_DATASET_CREATE_DEFAULT;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1DATASET_1CREATE_1DEFAULT(JNIEnv *env, jclass cls) +{ + return H5P_DATASET_CREATE_DEFAULT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1DATASET_1ACCESS_1DEFAULT(JNIEnv *env, jclass cls){return H5P_DATASET_ACCESS_DEFAULT;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1DATASET_1ACCESS_1DEFAULT(JNIEnv *env, jclass cls) +{ + return H5P_DATASET_ACCESS_DEFAULT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1DATASET_1XFER_1DEFAULT(JNIEnv *env, jclass cls){return H5P_DATASET_XFER_DEFAULT;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1DATASET_1XFER_1DEFAULT(JNIEnv *env, jclass cls) +{ + return H5P_DATASET_XFER_DEFAULT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1FILE_1MOUNT_1DEFAULT(JNIEnv *env, jclass cls){return H5P_FILE_MOUNT_DEFAULT;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1FILE_1MOUNT_1DEFAULT(JNIEnv *env, jclass cls) +{ + return H5P_FILE_MOUNT_DEFAULT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1GROUP_1CREATE_1DEFAULT(JNIEnv *env, jclass cls){return H5P_GROUP_CREATE_DEFAULT;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1GROUP_1CREATE_1DEFAULT(JNIEnv *env, jclass cls) +{ + return H5P_GROUP_CREATE_DEFAULT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1GROUP_1ACCESS_1DEFAULT(JNIEnv *env, jclass cls){return H5P_GROUP_ACCESS_DEFAULT;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1GROUP_1ACCESS_1DEFAULT(JNIEnv *env, jclass cls) +{ + return H5P_GROUP_ACCESS_DEFAULT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1DATATYPE_1CREATE_1DEFAULT(JNIEnv *env, jclass cls){return H5P_DATATYPE_CREATE_DEFAULT;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1DATATYPE_1CREATE_1DEFAULT(JNIEnv *env, jclass cls) +{ + return H5P_DATATYPE_CREATE_DEFAULT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1DATATYPE_1ACCESS_1DEFAULT(JNIEnv *env, jclass cls){return H5P_DATATYPE_ACCESS_DEFAULT;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1DATATYPE_1ACCESS_1DEFAULT(JNIEnv *env, jclass cls) +{ + return H5P_DATATYPE_ACCESS_DEFAULT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1ATTRIBUTE_1CREATE_1DEFAULT(JNIEnv *env, jclass cls){return H5P_ATTRIBUTE_CREATE_DEFAULT;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1ATTRIBUTE_1CREATE_1DEFAULT(JNIEnv *env, jclass cls) +{ + return H5P_ATTRIBUTE_CREATE_DEFAULT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1ATTRIBUTE_1ACCESS_1DEFAULT(JNIEnv *env, jclass cls){return H5P_ATTRIBUTE_ACCESS_DEFAULT;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1ATTRIBUTE_1ACCESS_1DEFAULT(JNIEnv *env, jclass cls) +{ + return H5P_ATTRIBUTE_ACCESS_DEFAULT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1OBJECT_1COPY_1DEFAULT(JNIEnv *env, jclass cls){return H5P_OBJECT_COPY_DEFAULT;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1OBJECT_1COPY_1DEFAULT(JNIEnv *env, jclass cls) +{ + return H5P_OBJECT_COPY_DEFAULT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1LINK_1CREATE_1DEFAULT(JNIEnv *env, jclass cls){return H5P_LINK_CREATE_DEFAULT;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1LINK_1CREATE_1DEFAULT(JNIEnv *env, jclass cls) +{ + return H5P_LINK_CREATE_DEFAULT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1LINK_1ACCESS_1DEFAULT(JNIEnv *env, jclass cls){return H5P_LINK_ACCESS_DEFAULT;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1LINK_1ACCESS_1DEFAULT(JNIEnv *env, jclass cls) +{ + return H5P_LINK_ACCESS_DEFAULT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1VOL_1INITIALIZE_1DEFAULT(JNIEnv *env, jclass cls){return H5P_VOL_INITIALIZE_DEFAULT;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1VOL_1INITIALIZE_1DEFAULT(JNIEnv *env, jclass cls) +{ + return H5P_VOL_INITIALIZE_DEFAULT; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1CRT_1ORDER_1TRACKED(JNIEnv *env, jclass cls){return H5P_CRT_ORDER_TRACKED;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1CRT_1ORDER_1TRACKED(JNIEnv *env, jclass cls) +{ + return H5P_CRT_ORDER_TRACKED; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1CRT_1ORDER_1INDEXED(JNIEnv *env, jclass cls){return H5P_CRT_ORDER_INDEXED;} +Java_hdf_hdf5lib_HDF5Constants_H5P_1CRT_1ORDER_1INDEXED(JNIEnv *env, jclass cls) +{ + return H5P_CRT_ORDER_INDEXED; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1DEFAULT(JNIEnv *env, jclass cls) { return H5P_DEFAULT; } +Java_hdf_hdf5lib_HDF5Constants_H5P_1DEFAULT(JNIEnv *env, jclass cls) +{ + return H5P_DEFAULT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5P_1NO_1CLASS(JNIEnv *env, jclass cls) { return H5P_ROOT; } +Java_hdf_hdf5lib_HDF5Constants_H5P_1NO_1CLASS(JNIEnv *env, jclass cls) +{ + return H5P_ROOT; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5PL_1TYPE_1ERROR(JNIEnv *env, jclass cls) { return H5PL_TYPE_ERROR; } +Java_hdf_hdf5lib_HDF5Constants_H5PL_1TYPE_1ERROR(JNIEnv *env, jclass cls) +{ + return H5PL_TYPE_ERROR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5PL_1TYPE_1FILTER(JNIEnv *env, jclass cls) { return H5PL_TYPE_FILTER; } +Java_hdf_hdf5lib_HDF5Constants_H5PL_1TYPE_1FILTER(JNIEnv *env, jclass cls) +{ + return H5PL_TYPE_FILTER; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5PL_1TYPE_1VOL(JNIEnv *env, jclass cls) { return H5PL_TYPE_VOL; } +Java_hdf_hdf5lib_HDF5Constants_H5PL_1TYPE_1VOL(JNIEnv *env, jclass cls) +{ + return H5PL_TYPE_VOL; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5PL_1TYPE_1NONE(JNIEnv *env, jclass cls) { return H5PL_TYPE_NONE; } +Java_hdf_hdf5lib_HDF5Constants_H5PL_1TYPE_1NONE(JNIEnv *env, jclass cls) +{ + return H5PL_TYPE_NONE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5PL_1FILTER_1PLUGIN(JNIEnv *env, jclass cls) { return H5PL_FILTER_PLUGIN; } +Java_hdf_hdf5lib_HDF5Constants_H5PL_1FILTER_1PLUGIN(JNIEnv *env, jclass cls) +{ + return H5PL_FILTER_PLUGIN; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5PL_1VOL_1PLUGIN(JNIEnv *env, jclass cls) { return H5PL_VOL_PLUGIN; } +Java_hdf_hdf5lib_HDF5Constants_H5PL_1VOL_1PLUGIN(JNIEnv *env, jclass cls) +{ + return H5PL_VOL_PLUGIN; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5PL_1ALL_1PLUGIN(JNIEnv *env, jclass cls) { return H5PL_ALL_PLUGIN; } +Java_hdf_hdf5lib_HDF5Constants_H5PL_1ALL_1PLUGIN(JNIEnv *env, jclass cls) +{ + return H5PL_ALL_PLUGIN; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5R_1BADTYPE(JNIEnv *env, jclass cls) { return H5R_BADTYPE; } +Java_hdf_hdf5lib_HDF5Constants_H5R_1BADTYPE(JNIEnv *env, jclass cls) +{ + return H5R_BADTYPE; +} +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5R_1MAXTYPE(JNIEnv *env, jclass cls) +{ + return H5R_MAXTYPE; +} +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5R_1REF_1BUF_1SIZE(JNIEnv *env, jclass cls) +{ + return H5R_REF_BUF_SIZE; +} +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5R_1OBJ_1REF_1BUF_1SIZE(JNIEnv *env, jclass cls) +{ + return H5R_OBJ_REF_BUF_SIZE; +} +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5R_1DSET_1REG_1REF_1BUF_1SIZE(JNIEnv *env, jclass cls) +{ + return H5R_DSET_REG_REF_BUF_SIZE; +} +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5R_1ATTR(JNIEnv *env, jclass cls) +{ + return H5R_ATTR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5R_1MAXTYPE(JNIEnv *env, jclass cls) { return H5R_MAXTYPE; } +Java_hdf_hdf5lib_HDF5Constants_H5R_1OBJECT(JNIEnv *env, jclass cls) +{ + return H5R_OBJECT; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5R_1OBJ_1REF_1BUF_1SIZE(JNIEnv *env, jclass cls) { return H5R_OBJ_REF_BUF_SIZE; } +Java_hdf_hdf5lib_HDF5Constants_H5R_1OBJECT1(JNIEnv *env, jclass cls) +{ + return H5R_OBJECT1; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5R_1DSET_1REG_1REF_1BUF_1SIZE(JNIEnv *env, jclass cls) { return H5R_DSET_REG_REF_BUF_SIZE; } +Java_hdf_hdf5lib_HDF5Constants_H5R_1OBJECT2(JNIEnv *env, jclass cls) +{ + return H5R_OBJECT2; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5R_1OBJECT(JNIEnv *env, jclass cls) { return H5R_OBJECT; } +Java_hdf_hdf5lib_HDF5Constants_H5R_1DATASET_1REGION(JNIEnv *env, jclass cls) +{ + return H5R_DATASET_REGION; +} +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5R_1DATASET_1REGION1(JNIEnv *env, jclass cls) +{ + return H5R_DATASET_REGION1; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5R_1DATASET_1REGION(JNIEnv *env, jclass cls) { return H5R_DATASET_REGION; } +Java_hdf_hdf5lib_HDF5Constants_H5R_1DATASET_1REGION2(JNIEnv *env, jclass cls) +{ + return H5R_DATASET_REGION2; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5S_1ALL(JNIEnv *env, jclass cls) { return H5S_ALL; } +Java_hdf_hdf5lib_HDF5Constants_H5S_1ALL(JNIEnv *env, jclass cls) +{ + return H5S_ALL; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5S_1MAX_1RANK(JNIEnv *env, jclass cls) { return H5S_MAX_RANK; } +Java_hdf_hdf5lib_HDF5Constants_H5S_1MAX_1RANK(JNIEnv *env, jclass cls) +{ + return H5S_MAX_RANK; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5S_1NO_1CLASS(JNIEnv *env, jclass cls) { return H5S_NO_CLASS; } +Java_hdf_hdf5lib_HDF5Constants_H5S_1NO_1CLASS(JNIEnv *env, jclass cls) +{ + return H5S_NO_CLASS; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5S_1NULL(JNIEnv *env, jclass cls) { return H5S_NULL; } +Java_hdf_hdf5lib_HDF5Constants_H5S_1NULL(JNIEnv *env, jclass cls) +{ + return H5S_NULL; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5S_1SCALAR(JNIEnv *env, jclass cls) { return H5S_SCALAR; } +Java_hdf_hdf5lib_HDF5Constants_H5S_1SCALAR(JNIEnv *env, jclass cls) +{ + return H5S_SCALAR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5S_1SEL_1ALL(JNIEnv *env, jclass cls) { return H5S_SEL_ALL; } +Java_hdf_hdf5lib_HDF5Constants_H5S_1SEL_1ALL(JNIEnv *env, jclass cls) +{ + return H5S_SEL_ALL; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5S_1SEL_1ERROR(JNIEnv *env, jclass cls) { return H5S_SEL_ERROR; } +Java_hdf_hdf5lib_HDF5Constants_H5S_1SEL_1ERROR(JNIEnv *env, jclass cls) +{ + return H5S_SEL_ERROR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5S_1SEL_1HYPERSLABS(JNIEnv *env, jclass cls) { return H5S_SEL_HYPERSLABS; } +Java_hdf_hdf5lib_HDF5Constants_H5S_1SEL_1HYPERSLABS(JNIEnv *env, jclass cls) +{ + return H5S_SEL_HYPERSLABS; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5S_1SEL_1N(JNIEnv *env, jclass cls) { return H5S_SEL_N; } +Java_hdf_hdf5lib_HDF5Constants_H5S_1SEL_1N(JNIEnv *env, jclass cls) +{ + return H5S_SEL_N; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5S_1SEL_1NONE(JNIEnv *env, jclass cls) { return H5S_SEL_NONE; } +Java_hdf_hdf5lib_HDF5Constants_H5S_1SEL_1NONE(JNIEnv *env, jclass cls) +{ + return H5S_SEL_NONE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5S_1SEL_1POINTS(JNIEnv *env, jclass cls) { return H5S_SEL_POINTS; } +Java_hdf_hdf5lib_HDF5Constants_H5S_1SEL_1POINTS(JNIEnv *env, jclass cls) +{ + return H5S_SEL_POINTS; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5S_1SELECT_1AND(JNIEnv *env, jclass cls) { return H5S_SELECT_AND; } +Java_hdf_hdf5lib_HDF5Constants_H5S_1SELECT_1AND(JNIEnv *env, jclass cls) +{ + return H5S_SELECT_AND; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5S_1SELECT_1APPEND(JNIEnv *env, jclass cls) { return H5S_SELECT_APPEND; } +Java_hdf_hdf5lib_HDF5Constants_H5S_1SELECT_1APPEND(JNIEnv *env, jclass cls) +{ + return H5S_SELECT_APPEND; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5S_1SELECT_1INVALID(JNIEnv *env, jclass cls) { return H5S_SELECT_INVALID; } +Java_hdf_hdf5lib_HDF5Constants_H5S_1SELECT_1INVALID(JNIEnv *env, jclass cls) +{ + return H5S_SELECT_INVALID; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5S_1SELECT_1NOOP(JNIEnv *env, jclass cls) { return H5S_SELECT_NOOP; } +Java_hdf_hdf5lib_HDF5Constants_H5S_1SELECT_1NOOP(JNIEnv *env, jclass cls) +{ + return H5S_SELECT_NOOP; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5S_1SELECT_1NOTA(JNIEnv *env, jclass cls) { return H5S_SELECT_NOTA; } +Java_hdf_hdf5lib_HDF5Constants_H5S_1SELECT_1NOTA(JNIEnv *env, jclass cls) +{ + return H5S_SELECT_NOTA; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5S_1SELECT_1NOTB(JNIEnv *env, jclass cls) { return H5S_SELECT_NOTB; } +Java_hdf_hdf5lib_HDF5Constants_H5S_1SELECT_1NOTB(JNIEnv *env, jclass cls) +{ + return H5S_SELECT_NOTB; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5S_1SELECT_1OR(JNIEnv *env, jclass cls) { return H5S_SELECT_OR; } +Java_hdf_hdf5lib_HDF5Constants_H5S_1SELECT_1OR(JNIEnv *env, jclass cls) +{ + return H5S_SELECT_OR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5S_1SELECT_1PREPEND(JNIEnv *env, jclass cls) { return H5S_SELECT_PREPEND; } +Java_hdf_hdf5lib_HDF5Constants_H5S_1SELECT_1PREPEND(JNIEnv *env, jclass cls) +{ + return H5S_SELECT_PREPEND; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5S_1SELECT_1SET(JNIEnv *env, jclass cls) { return H5S_SELECT_SET; } +Java_hdf_hdf5lib_HDF5Constants_H5S_1SELECT_1SET(JNIEnv *env, jclass cls) +{ + return H5S_SELECT_SET; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5S_1SELECT_1XOR(JNIEnv *env, jclass cls) { return H5S_SELECT_XOR; } +Java_hdf_hdf5lib_HDF5Constants_H5S_1SELECT_1XOR(JNIEnv *env, jclass cls) +{ + return H5S_SELECT_XOR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5S_1SIMPLE(JNIEnv *env, jclass cls) { return H5S_SIMPLE; } +Java_hdf_hdf5lib_HDF5Constants_H5S_1SIMPLE(JNIEnv *env, jclass cls) +{ + return H5S_SIMPLE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5S_1UNLIMITED(JNIEnv *env, jclass cls) { return (jint)H5S_UNLIMITED; } +Java_hdf_hdf5lib_HDF5Constants_H5S_1UNLIMITED(JNIEnv *env, jclass cls) +{ + return (jint)H5S_UNLIMITED; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1ALPHA_1B16(JNIEnv *env, jclass cls) { return H5T_ALPHA_B16; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1ALPHA_1B16(JNIEnv *env, jclass cls) +{ + return H5T_ALPHA_B16; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1ALPHA_1B32(JNIEnv *env, jclass cls) { return H5T_ALPHA_B32; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1ALPHA_1B32(JNIEnv *env, jclass cls) +{ + return H5T_ALPHA_B32; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1ALPHA_1B64(JNIEnv *env, jclass cls) { return H5T_ALPHA_B64; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1ALPHA_1B64(JNIEnv *env, jclass cls) +{ + return H5T_ALPHA_B64; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1ALPHA_1B8(JNIEnv *env, jclass cls) { return H5T_ALPHA_B8; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1ALPHA_1B8(JNIEnv *env, jclass cls) +{ + return H5T_ALPHA_B8; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1ALPHA_1F32(JNIEnv *env, jclass cls) { return H5T_ALPHA_F32; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1ALPHA_1F32(JNIEnv *env, jclass cls) +{ + return H5T_ALPHA_F32; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1ALPHA_1F64(JNIEnv *env, jclass cls) { return H5T_ALPHA_F64; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1ALPHA_1F64(JNIEnv *env, jclass cls) +{ + return H5T_ALPHA_F64; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1ALPHA_1I16(JNIEnv *env, jclass cls) { return H5T_ALPHA_I16; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1ALPHA_1I16(JNIEnv *env, jclass cls) +{ + return H5T_ALPHA_I16; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1ALPHA_1I32(JNIEnv *env, jclass cls) { return H5T_ALPHA_I32; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1ALPHA_1I32(JNIEnv *env, jclass cls) +{ + return H5T_ALPHA_I32; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1ALPHA_1I64(JNIEnv *env, jclass cls) { return H5T_ALPHA_I64; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1ALPHA_1I64(JNIEnv *env, jclass cls) +{ + return H5T_ALPHA_I64; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1ALPHA_1I8(JNIEnv *env, jclass cls) { return H5T_ALPHA_I8; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1ALPHA_1I8(JNIEnv *env, jclass cls) +{ + return H5T_ALPHA_I8; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1ALPHA_1U16(JNIEnv *env, jclass cls) { return H5T_ALPHA_U16; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1ALPHA_1U16(JNIEnv *env, jclass cls) +{ + return H5T_ALPHA_U16; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1ALPHA_1U32(JNIEnv *env, jclass cls) { return H5T_ALPHA_U32; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1ALPHA_1U32(JNIEnv *env, jclass cls) +{ + return H5T_ALPHA_U32; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1ALPHA_1U64(JNIEnv *env, jclass cls) { return H5T_ALPHA_U64; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1ALPHA_1U64(JNIEnv *env, jclass cls) +{ + return H5T_ALPHA_U64; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1ALPHA_1U8(JNIEnv *env, jclass cls) { return H5T_ALPHA_U8; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1ALPHA_1U8(JNIEnv *env, jclass cls) +{ + return H5T_ALPHA_U8; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1ARRAY(JNIEnv *env, jclass cls) { return H5T_ARRAY; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1ARRAY(JNIEnv *env, jclass cls) +{ + return H5T_ARRAY; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1BITFIELD(JNIEnv *env, jclass cls) { return H5T_BITFIELD; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1BITFIELD(JNIEnv *env, jclass cls) +{ + return H5T_BITFIELD; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1BKG_1NO(JNIEnv *env, jclass cls) { return H5T_BKG_NO; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1BKG_1NO(JNIEnv *env, jclass cls) +{ + return H5T_BKG_NO; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1BKG_1YES(JNIEnv *env, jclass cls) { return H5T_BKG_YES; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1BKG_1YES(JNIEnv *env, jclass cls) +{ + return H5T_BKG_YES; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1C_1S1(JNIEnv *env, jclass cls) { return H5T_C_S1; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1C_1S1(JNIEnv *env, jclass cls) +{ + return H5T_C_S1; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1COMPOUND(JNIEnv *env, jclass cls) { return H5T_COMPOUND; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1COMPOUND(JNIEnv *env, jclass cls) +{ + return H5T_COMPOUND; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1CONV_1CONV(JNIEnv *env, jclass cls) { return H5T_CONV_CONV; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1CONV_1CONV(JNIEnv *env, jclass cls) +{ + return H5T_CONV_CONV; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1CONV_1FREE(JNIEnv *env, jclass cls) { return H5T_CONV_FREE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1CONV_1FREE(JNIEnv *env, jclass cls) +{ + return H5T_CONV_FREE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1CONV_1INIT(JNIEnv *env, jclass cls) { return H5T_CONV_INIT; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1CONV_1INIT(JNIEnv *env, jclass cls) +{ + return H5T_CONV_INIT; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1ERROR(JNIEnv *env, jclass cls) { return H5T_CSET_ERROR; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1ERROR(JNIEnv *env, jclass cls) +{ + return H5T_CSET_ERROR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1ASCII(JNIEnv *env, jclass cls) { return H5T_CSET_ASCII; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1ASCII(JNIEnv *env, jclass cls) +{ + return H5T_CSET_ASCII; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1UTF8(JNIEnv *env, jclass cls) { return H5T_CSET_UTF8; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1UTF8(JNIEnv *env, jclass cls) +{ + return H5T_CSET_UTF8; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1RESERVED_110(JNIEnv *env, jclass cls) { return H5T_CSET_RESERVED_10; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1RESERVED_110(JNIEnv *env, jclass cls) +{ + return H5T_CSET_RESERVED_10; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1RESERVED_111(JNIEnv *env, jclass cls) { return H5T_CSET_RESERVED_11; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1RESERVED_111(JNIEnv *env, jclass cls) +{ + return H5T_CSET_RESERVED_11; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1RESERVED_112(JNIEnv *env, jclass cls) { return H5T_CSET_RESERVED_12; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1RESERVED_112(JNIEnv *env, jclass cls) +{ + return H5T_CSET_RESERVED_12; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1RESERVED_113(JNIEnv *env, jclass cls) { return H5T_CSET_RESERVED_13; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1RESERVED_113(JNIEnv *env, jclass cls) +{ + return H5T_CSET_RESERVED_13; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1RESERVED_114(JNIEnv *env, jclass cls) { return H5T_CSET_RESERVED_14; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1RESERVED_114(JNIEnv *env, jclass cls) +{ + return H5T_CSET_RESERVED_14; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1RESERVED_115(JNIEnv *env, jclass cls) { return H5T_CSET_RESERVED_15; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1RESERVED_115(JNIEnv *env, jclass cls) +{ + return H5T_CSET_RESERVED_15; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1RESERVED_12(JNIEnv *env, jclass cls) { return H5T_CSET_RESERVED_2; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1RESERVED_12(JNIEnv *env, jclass cls) +{ + return H5T_CSET_RESERVED_2; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1RESERVED_13(JNIEnv *env, jclass cls) { return H5T_CSET_RESERVED_3; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1RESERVED_13(JNIEnv *env, jclass cls) +{ + return H5T_CSET_RESERVED_3; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1RESERVED_14(JNIEnv *env, jclass cls) { return H5T_CSET_RESERVED_4; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1RESERVED_14(JNIEnv *env, jclass cls) +{ + return H5T_CSET_RESERVED_4; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1RESERVED_15(JNIEnv *env, jclass cls) { return H5T_CSET_RESERVED_5; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1RESERVED_15(JNIEnv *env, jclass cls) +{ + return H5T_CSET_RESERVED_5; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1RESERVED_16(JNIEnv *env, jclass cls) { return H5T_CSET_RESERVED_6; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1RESERVED_16(JNIEnv *env, jclass cls) +{ + return H5T_CSET_RESERVED_6; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1RESERVED_17(JNIEnv *env, jclass cls) { return H5T_CSET_RESERVED_7; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1RESERVED_17(JNIEnv *env, jclass cls) +{ + return H5T_CSET_RESERVED_7; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1RESERVED_18(JNIEnv *env, jclass cls) { return H5T_CSET_RESERVED_8; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1RESERVED_18(JNIEnv *env, jclass cls) +{ + return H5T_CSET_RESERVED_8; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1RESERVED_19(JNIEnv *env, jclass cls) { return H5T_CSET_RESERVED_9; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1CSET_1RESERVED_19(JNIEnv *env, jclass cls) +{ + return H5T_CSET_RESERVED_9; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1DIR_1ASCEND(JNIEnv *env, jclass cls) { return H5T_DIR_ASCEND; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1DIR_1ASCEND(JNIEnv *env, jclass cls) +{ + return H5T_DIR_ASCEND; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1DIR_1DEFAULT(JNIEnv *env, jclass cls) { return H5T_DIR_DEFAULT; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1DIR_1DEFAULT(JNIEnv *env, jclass cls) +{ + return H5T_DIR_DEFAULT; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1DIR_1DESCEND(JNIEnv *env, jclass cls) { return H5T_DIR_DESCEND; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1DIR_1DESCEND(JNIEnv *env, jclass cls) +{ + return H5T_DIR_DESCEND; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1ENUM(JNIEnv *env, jclass cls) { return H5T_ENUM; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1ENUM(JNIEnv *env, jclass cls) +{ + return H5T_ENUM; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1FLOAT(JNIEnv *env, jclass cls) { return H5T_FLOAT; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1FLOAT(JNIEnv *env, jclass cls) +{ + return H5T_FLOAT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1FORTRAN_1S1(JNIEnv *env, jclass cls) { return H5T_FORTRAN_S1; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1FORTRAN_1S1(JNIEnv *env, jclass cls) +{ + return H5T_FORTRAN_S1; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1IEEE_1F32BE(JNIEnv *env, jclass cls) { return H5T_IEEE_F32BE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1IEEE_1F32BE(JNIEnv *env, jclass cls) +{ + return H5T_IEEE_F32BE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1IEEE_1F32LE(JNIEnv *env, jclass cls) { return H5T_IEEE_F32LE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1IEEE_1F32LE(JNIEnv *env, jclass cls) +{ + return H5T_IEEE_F32LE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1IEEE_1F64BE(JNIEnv *env, jclass cls) { return H5T_IEEE_F64BE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1IEEE_1F64BE(JNIEnv *env, jclass cls) +{ + return H5T_IEEE_F64BE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1IEEE_1F64LE(JNIEnv *env, jclass cls) { return H5T_IEEE_F64LE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1IEEE_1F64LE(JNIEnv *env, jclass cls) +{ + return H5T_IEEE_F64LE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEGER(JNIEnv *env, jclass cls) { return H5T_INTEGER; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEGER(JNIEnv *env, jclass cls) +{ + return H5T_INTEGER; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEL_1B16(JNIEnv *env, jclass cls) { return H5T_INTEL_B16; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEL_1B16(JNIEnv *env, jclass cls) +{ + return H5T_INTEL_B16; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEL_1B32(JNIEnv *env, jclass cls) { return H5T_INTEL_B32; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEL_1B32(JNIEnv *env, jclass cls) +{ + return H5T_INTEL_B32; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEL_1B64(JNIEnv *env, jclass cls) { return H5T_INTEL_B64; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEL_1B64(JNIEnv *env, jclass cls) +{ + return H5T_INTEL_B64; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEL_1B8(JNIEnv *env, jclass cls) { return H5T_INTEL_B8; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEL_1B8(JNIEnv *env, jclass cls) +{ + return H5T_INTEL_B8; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEL_1F32(JNIEnv *env, jclass cls) { return H5T_INTEL_F32; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEL_1F32(JNIEnv *env, jclass cls) +{ + return H5T_INTEL_F32; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEL_1F64(JNIEnv *env, jclass cls) { return H5T_INTEL_F64; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEL_1F64(JNIEnv *env, jclass cls) +{ + return H5T_INTEL_F64; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEL_1I16(JNIEnv *env, jclass cls) { return H5T_INTEL_I16; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEL_1I16(JNIEnv *env, jclass cls) +{ + return H5T_INTEL_I16; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEL_1I32(JNIEnv *env, jclass cls) { return H5T_INTEL_I32; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEL_1I32(JNIEnv *env, jclass cls) +{ + return H5T_INTEL_I32; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEL_1I64(JNIEnv *env, jclass cls) { return H5T_INTEL_I64; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEL_1I64(JNIEnv *env, jclass cls) +{ + return H5T_INTEL_I64; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEL_1I8(JNIEnv *env, jclass cls) { return H5T_INTEL_I8; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEL_1I8(JNIEnv *env, jclass cls) +{ + return H5T_INTEL_I8; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEL_1U16(JNIEnv *env, jclass cls) { return H5T_INTEL_U16; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEL_1U16(JNIEnv *env, jclass cls) +{ + return H5T_INTEL_U16; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEL_1U32(JNIEnv *env, jclass cls) { return H5T_INTEL_U32; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEL_1U32(JNIEnv *env, jclass cls) +{ + return H5T_INTEL_U32; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEL_1U64(JNIEnv *env, jclass cls) { return H5T_INTEL_U64; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEL_1U64(JNIEnv *env, jclass cls) +{ + return H5T_INTEL_U64; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEL_1U8(JNIEnv *env, jclass cls) { return H5T_INTEL_U8; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1INTEL_1U8(JNIEnv *env, jclass cls) +{ + return H5T_INTEL_U8; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1MIPS_1B16(JNIEnv *env, jclass cls) { return H5T_MIPS_B16; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1MIPS_1B16(JNIEnv *env, jclass cls) +{ + return H5T_MIPS_B16; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1MIPS_1B32(JNIEnv *env, jclass cls) { return H5T_MIPS_B32; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1MIPS_1B32(JNIEnv *env, jclass cls) +{ + return H5T_MIPS_B32; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1MIPS_1B64(JNIEnv *env, jclass cls) { return H5T_MIPS_B64; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1MIPS_1B64(JNIEnv *env, jclass cls) +{ + return H5T_MIPS_B64; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1MIPS_1B8(JNIEnv *env, jclass cls) { return H5T_MIPS_B8; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1MIPS_1B8(JNIEnv *env, jclass cls) +{ + return H5T_MIPS_B8; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1MIPS_1F32(JNIEnv *env, jclass cls) { return H5T_MIPS_F32; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1MIPS_1F32(JNIEnv *env, jclass cls) +{ + return H5T_MIPS_F32; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1MIPS_1F64(JNIEnv *env, jclass cls) { return H5T_MIPS_F64; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1MIPS_1F64(JNIEnv *env, jclass cls) +{ + return H5T_MIPS_F64; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1MIPS_1I16(JNIEnv *env, jclass cls) { return H5T_MIPS_I16; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1MIPS_1I16(JNIEnv *env, jclass cls) +{ + return H5T_MIPS_I16; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1MIPS_1I32(JNIEnv *env, jclass cls) { return H5T_MIPS_I32; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1MIPS_1I32(JNIEnv *env, jclass cls) +{ + return H5T_MIPS_I32; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1MIPS_1I64(JNIEnv *env, jclass cls) { return H5T_MIPS_I64; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1MIPS_1I64(JNIEnv *env, jclass cls) +{ + return H5T_MIPS_I64; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1MIPS_1I8(JNIEnv *env, jclass cls) { return H5T_MIPS_I8; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1MIPS_1I8(JNIEnv *env, jclass cls) +{ + return H5T_MIPS_I8; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1MIPS_1U16(JNIEnv *env, jclass cls) { return H5T_MIPS_U16; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1MIPS_1U16(JNIEnv *env, jclass cls) +{ + return H5T_MIPS_U16; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1MIPS_1U32(JNIEnv *env, jclass cls) { return H5T_MIPS_U32; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1MIPS_1U32(JNIEnv *env, jclass cls) +{ + return H5T_MIPS_U32; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1MIPS_1U64(JNIEnv *env, jclass cls) { return H5T_MIPS_U64; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1MIPS_1U64(JNIEnv *env, jclass cls) +{ + return H5T_MIPS_U64; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1MIPS_1U8(JNIEnv *env, jclass cls) { return H5T_MIPS_U8; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1MIPS_1U8(JNIEnv *env, jclass cls) +{ + return H5T_MIPS_U8; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1B16(JNIEnv *env, jclass cls) { return H5T_NATIVE_B16; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1B16(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_B16; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1B32(JNIEnv *env, jclass cls) { return H5T_NATIVE_B32; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1B32(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_B32; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1B64(JNIEnv *env, jclass cls) { return H5T_NATIVE_B64; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1B64(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_B64; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1B8(JNIEnv *env, jclass cls) { return H5T_NATIVE_B8; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1B8(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_B8; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1CHAR(JNIEnv *env, jclass cls) { return H5T_NATIVE_CHAR; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1CHAR(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_CHAR; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1DOUBLE(JNIEnv *env, jclass cls) { return H5T_NATIVE_DOUBLE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1DOUBLE(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_DOUBLE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1FLOAT(JNIEnv *env, jclass cls) { return H5T_NATIVE_FLOAT; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1FLOAT(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_FLOAT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1HADDR(JNIEnv *env, jclass cls) { return H5T_NATIVE_HADDR; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1HADDR(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_HADDR; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1HBOOL(JNIEnv *env, jclass cls) { return H5T_NATIVE_HBOOL; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1HBOOL(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_HBOOL; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1HERR(JNIEnv *env, jclass cls) { return H5T_NATIVE_HERR; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1HERR(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_HERR; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1HSIZE(JNIEnv *env, jclass cls) { return H5T_NATIVE_HSIZE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1HSIZE(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_HSIZE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1HSSIZE(JNIEnv *env, jclass cls) { return H5T_NATIVE_HSSIZE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1HSSIZE(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_HSSIZE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1INT(JNIEnv *env, jclass cls) { return H5T_NATIVE_INT; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1INT(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_INT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1INT_1FAST16(JNIEnv *env, jclass cls) { return H5T_NATIVE_INT_FAST16; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1INT_1FAST16(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_INT_FAST16; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1INT_1FAST32(JNIEnv *env, jclass cls) { return H5T_NATIVE_INT_FAST32; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1INT_1FAST32(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_INT_FAST32; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1INT_1FAST64(JNIEnv *env, jclass cls) { return H5T_NATIVE_INT_FAST64; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1INT_1FAST64(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_INT_FAST64; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1INT_1FAST8(JNIEnv *env, jclass cls) { return H5T_NATIVE_INT_FAST8; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1INT_1FAST8(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_INT_FAST8; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1INT_1LEAST16(JNIEnv *env, jclass cls) { return H5T_NATIVE_INT_LEAST16; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1INT_1LEAST16(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_INT_LEAST16; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1INT_1LEAST32(JNIEnv *env, jclass cls) { return H5T_NATIVE_INT_LEAST32; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1INT_1LEAST32(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_INT_LEAST32; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1INT_1LEAST64(JNIEnv *env, jclass cls) { return H5T_NATIVE_INT_LEAST64; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1INT_1LEAST64(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_INT_LEAST64; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1INT_1LEAST8(JNIEnv *env, jclass cls) { return H5T_NATIVE_INT_LEAST8; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1INT_1LEAST8(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_INT_LEAST8; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1INT16(JNIEnv *env, jclass cls) { return H5T_NATIVE_INT16; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1INT16(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_INT16; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1INT32(JNIEnv *env, jclass cls) { return H5T_NATIVE_INT32; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1INT32(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_INT32; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1INT64(JNIEnv *env, jclass cls) { return H5T_NATIVE_INT64; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1INT64(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_INT64; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1INT8(JNIEnv *env, jclass cls) { return H5T_NATIVE_INT8; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1INT8(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_INT8; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1LDOUBLE(JNIEnv *env, jclass cls) { return H5T_NATIVE_LDOUBLE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1LDOUBLE(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_LDOUBLE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1LLONG(JNIEnv *env, jclass cls) { return H5T_NATIVE_LLONG; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1LLONG(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_LLONG; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1LONG(JNIEnv *env, jclass cls) { return H5T_NATIVE_LONG; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1LONG(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_LONG; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1OPAQUE(JNIEnv *env, jclass cls) { return H5T_NATIVE_OPAQUE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1OPAQUE(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_OPAQUE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1SCHAR(JNIEnv *env, jclass cls) { return H5T_NATIVE_SCHAR; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1SCHAR(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_SCHAR; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1SHORT(JNIEnv *env, jclass cls) { return H5T_NATIVE_SHORT; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1SHORT(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_SHORT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1UCHAR(JNIEnv *env, jclass cls) { return H5T_NATIVE_UCHAR; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1UCHAR(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_UCHAR; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1UINT(JNIEnv *env, jclass cls) { return H5T_NATIVE_UINT; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1UINT(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_UINT; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1UINT_1FAST16(JNIEnv *env, jclass cls) { return H5T_NATIVE_UINT_FAST16; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1UINT_1FAST16(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_UINT_FAST16; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1UINT_1FAST32(JNIEnv *env, jclass cls) { return H5T_NATIVE_UINT_FAST32; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1UINT_1FAST32(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_UINT_FAST32; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1UINT_1FAST64(JNIEnv *env, jclass cls) { return H5T_NATIVE_UINT_FAST64; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1UINT_1FAST64(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_UINT_FAST64; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1UINT_1FAST8(JNIEnv *env, jclass cls) { return H5T_NATIVE_UINT_FAST8; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1UINT_1FAST8(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_UINT_FAST8; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1UINT_1LEAST16(JNIEnv *env, jclass cls) { return H5T_NATIVE_UINT_LEAST16; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1UINT_1LEAST16(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_UINT_LEAST16; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1UINT_1LEAST32(JNIEnv *env, jclass cls) { return H5T_NATIVE_UINT_LEAST32; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1UINT_1LEAST32(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_UINT_LEAST32; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1UINT_1LEAST64(JNIEnv *env, jclass cls) { return H5T_NATIVE_UINT_LEAST64; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1UINT_1LEAST64(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_UINT_LEAST64; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1UINT_1LEAST8(JNIEnv *env, jclass cls) { return H5T_NATIVE_UINT_LEAST8; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1UINT_1LEAST8(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_UINT_LEAST8; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1UINT16(JNIEnv *env, jclass cls) { return H5T_NATIVE_UINT16; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1UINT16(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_UINT16; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1UINT32(JNIEnv *env, jclass cls) { return H5T_NATIVE_UINT32; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1UINT32(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_UINT32; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1UINT64(JNIEnv *env, jclass cls) { return H5T_NATIVE_UINT64; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1UINT64(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_UINT64; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1UINT8(JNIEnv *env, jclass cls) { return H5T_NATIVE_UINT8; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1UINT8(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_UINT8; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1ULLONG(JNIEnv *env, jclass cls) { return H5T_NATIVE_ULLONG; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1ULLONG(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_ULLONG; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1ULONG(JNIEnv *env, jclass cls) { return H5T_NATIVE_ULONG; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1ULONG(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_ULONG; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1USHORT(JNIEnv *env, jclass cls) { return H5T_NATIVE_USHORT; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NATIVE_1USHORT(JNIEnv *env, jclass cls) +{ + return H5T_NATIVE_USHORT; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NCLASSES(JNIEnv *env, jclass cls) { return H5T_NCLASSES; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NCLASSES(JNIEnv *env, jclass cls) +{ + return H5T_NCLASSES; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NO_1CLASS(JNIEnv *env, jclass cls) { return H5T_NO_CLASS; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NO_1CLASS(JNIEnv *env, jclass cls) +{ + return H5T_NO_CLASS; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NORM_1ERROR(JNIEnv *env, jclass cls) { return H5T_NORM_ERROR; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NORM_1ERROR(JNIEnv *env, jclass cls) +{ + return H5T_NORM_ERROR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NORM_1IMPLIED(JNIEnv *env, jclass cls) { return H5T_NORM_IMPLIED; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NORM_1IMPLIED(JNIEnv *env, jclass cls) +{ + return H5T_NORM_IMPLIED; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NORM_1MSBSET(JNIEnv *env, jclass cls) { return H5T_NORM_MSBSET; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NORM_1MSBSET(JNIEnv *env, jclass cls) +{ + return H5T_NORM_MSBSET; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NORM_1NONE(JNIEnv *env, jclass cls) { return H5T_NORM_NONE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NORM_1NONE(JNIEnv *env, jclass cls) +{ + return H5T_NORM_NONE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NPAD(JNIEnv *env, jclass cls) { return H5T_NPAD; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NPAD(JNIEnv *env, jclass cls) +{ + return H5T_NPAD; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1NSGN(JNIEnv *env, jclass cls) { return H5T_NSGN; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1NSGN(JNIEnv *env, jclass cls) +{ + return H5T_NSGN; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1OPAQUE(JNIEnv *env, jclass cls) { return H5T_OPAQUE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1OPAQUE(JNIEnv *env, jclass cls) +{ + return H5T_OPAQUE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1OPAQUE_1TAG_1MAX(JNIEnv *env, jclass cls) { return H5T_OPAQUE_TAG_MAX; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1OPAQUE_1TAG_1MAX(JNIEnv *env, jclass cls) +{ + return H5T_OPAQUE_TAG_MAX; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1ORDER_1BE(JNIEnv *env, jclass cls) { return H5T_ORDER_BE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1ORDER_1BE(JNIEnv *env, jclass cls) +{ + return H5T_ORDER_BE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1ORDER_1ERROR(JNIEnv *env, jclass cls) { return H5T_ORDER_ERROR; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1ORDER_1ERROR(JNIEnv *env, jclass cls) +{ + return H5T_ORDER_ERROR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1ORDER_1LE(JNIEnv *env, jclass cls) { return H5T_ORDER_LE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1ORDER_1LE(JNIEnv *env, jclass cls) +{ + return H5T_ORDER_LE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1ORDER_1NONE(JNIEnv *env, jclass cls) { return H5T_ORDER_NONE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1ORDER_1NONE(JNIEnv *env, jclass cls) +{ + return H5T_ORDER_NONE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1ORDER_1VAX(JNIEnv *env, jclass cls) { return H5T_ORDER_VAX; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1ORDER_1VAX(JNIEnv *env, jclass cls) +{ + return H5T_ORDER_VAX; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1PAD_1BACKGROUND(JNIEnv *env, jclass cls) { return H5T_PAD_BACKGROUND; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1PAD_1BACKGROUND(JNIEnv *env, jclass cls) +{ + return H5T_PAD_BACKGROUND; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1PAD_1ERROR(JNIEnv *env, jclass cls) { return H5T_PAD_ERROR; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1PAD_1ERROR(JNIEnv *env, jclass cls) +{ + return H5T_PAD_ERROR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1PAD_1ONE(JNIEnv *env, jclass cls) { return H5T_PAD_ONE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1PAD_1ONE(JNIEnv *env, jclass cls) +{ + return H5T_PAD_ONE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1PAD_1ZERO(JNIEnv *env, jclass cls) { return H5T_PAD_ZERO; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1PAD_1ZERO(JNIEnv *env, jclass cls) +{ + return H5T_PAD_ZERO; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1PERS_1DONTCARE(JNIEnv *env, jclass cls) { return H5T_PERS_DONTCARE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1PERS_1DONTCARE(JNIEnv *env, jclass cls) +{ + return H5T_PERS_DONTCARE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1PERS_1HARD(JNIEnv *env, jclass cls) { return H5T_PERS_HARD; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1PERS_1HARD(JNIEnv *env, jclass cls) +{ + return H5T_PERS_HARD; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1PERS_1SOFT(JNIEnv *env, jclass cls) { return H5T_PERS_SOFT; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1PERS_1SOFT(JNIEnv *env, jclass cls) +{ + return H5T_PERS_SOFT; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1REFERENCE(JNIEnv *env, jclass cls) { return H5T_REFERENCE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1REFERENCE(JNIEnv *env, jclass cls) +{ + return H5T_REFERENCE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1SGN_12(JNIEnv *env, jclass cls) { return H5T_SGN_2; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1SGN_12(JNIEnv *env, jclass cls) +{ + return H5T_SGN_2; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1SGN_1ERROR(JNIEnv *env, jclass cls) { return H5T_SGN_ERROR; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1SGN_1ERROR(JNIEnv *env, jclass cls) +{ + return H5T_SGN_ERROR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1SGN_1NONE(JNIEnv *env, jclass cls) { return H5T_SGN_NONE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1SGN_1NONE(JNIEnv *env, jclass cls) +{ + return H5T_SGN_NONE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1B16BE(JNIEnv *env, jclass cls) { return H5T_STD_B16BE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1B16BE(JNIEnv *env, jclass cls) +{ + return H5T_STD_B16BE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1B16LE(JNIEnv *env, jclass cls) { return H5T_STD_B16LE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1B16LE(JNIEnv *env, jclass cls) +{ + return H5T_STD_B16LE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1B32BE(JNIEnv *env, jclass cls) { return H5T_STD_B32BE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1B32BE(JNIEnv *env, jclass cls) +{ + return H5T_STD_B32BE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1B32LE(JNIEnv *env, jclass cls) { return H5T_STD_B32LE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1B32LE(JNIEnv *env, jclass cls) +{ + return H5T_STD_B32LE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1B64BE(JNIEnv *env, jclass cls) { return H5T_STD_B64BE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1B64BE(JNIEnv *env, jclass cls) +{ + return H5T_STD_B64BE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1B64LE(JNIEnv *env, jclass cls) { return H5T_STD_B64LE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1B64LE(JNIEnv *env, jclass cls) +{ + return H5T_STD_B64LE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1B8BE(JNIEnv *env, jclass cls) { return H5T_STD_B8BE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1B8BE(JNIEnv *env, jclass cls) +{ + return H5T_STD_B8BE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1B8LE(JNIEnv *env, jclass cls) { return H5T_STD_B8LE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1B8LE(JNIEnv *env, jclass cls) +{ + return H5T_STD_B8LE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1I16BE(JNIEnv *env, jclass cls) { return H5T_STD_I16BE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1I16BE(JNIEnv *env, jclass cls) +{ + return H5T_STD_I16BE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1I16LE(JNIEnv *env, jclass cls) { return H5T_STD_I16LE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1I16LE(JNIEnv *env, jclass cls) +{ + return H5T_STD_I16LE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1I32BE(JNIEnv *env, jclass cls) { return H5T_STD_I32BE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1I32BE(JNIEnv *env, jclass cls) +{ + return H5T_STD_I32BE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1I32LE(JNIEnv *env, jclass cls) { return H5T_STD_I32LE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1I32LE(JNIEnv *env, jclass cls) +{ + return H5T_STD_I32LE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1I64BE(JNIEnv *env, jclass cls) { return H5T_STD_I64BE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1I64BE(JNIEnv *env, jclass cls) +{ + return H5T_STD_I64BE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1I64LE(JNIEnv *env, jclass cls) { return H5T_STD_I64LE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1I64LE(JNIEnv *env, jclass cls) +{ + return H5T_STD_I64LE; +} +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1I8BE(JNIEnv *env, jclass cls) +{ + return H5T_STD_I8BE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1I8BE(JNIEnv *env, jclass cls) { return H5T_STD_I8BE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1I8LE(JNIEnv *env, jclass cls) +{ + return H5T_STD_I8LE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1I8LE(JNIEnv *env, jclass cls) { return H5T_STD_I8LE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1REF_1DSETREG(JNIEnv *env, jclass cls) +{ + return H5T_STD_REF_DSETREG; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1REF_1DSETREG(JNIEnv *env, jclass cls) { return H5T_STD_REF_DSETREG; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1REF_1OBJ(JNIEnv *env, jclass cls) +{ + return H5T_STD_REF_OBJ; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1REF_1OBJ(JNIEnv *env, jclass cls) { return H5T_STD_REF_OBJ; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1REF(JNIEnv *env, jclass cls) +{ + return H5T_STD_REF; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1U16BE(JNIEnv *env, jclass cls) { return H5T_STD_U16BE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1U16BE(JNIEnv *env, jclass cls) +{ + return H5T_STD_U16BE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1U16LE(JNIEnv *env, jclass cls) { return H5T_STD_U16LE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1U16LE(JNIEnv *env, jclass cls) +{ + return H5T_STD_U16LE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1U32BE(JNIEnv *env, jclass cls) { return H5T_STD_U32BE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1U32BE(JNIEnv *env, jclass cls) +{ + return H5T_STD_U32BE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1U32LE(JNIEnv *env, jclass cls) { return H5T_STD_U32LE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1U32LE(JNIEnv *env, jclass cls) +{ + return H5T_STD_U32LE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1U64BE(JNIEnv *env, jclass cls) { return H5T_STD_U64BE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1U64BE(JNIEnv *env, jclass cls) +{ + return H5T_STD_U64BE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1U64LE(JNIEnv *env, jclass cls) { return H5T_STD_U64LE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1U64LE(JNIEnv *env, jclass cls) +{ + return H5T_STD_U64LE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1U8BE(JNIEnv *env, jclass cls) { return H5T_STD_U8BE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1U8BE(JNIEnv *env, jclass cls) +{ + return H5T_STD_U8BE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1U8LE(JNIEnv *env, jclass cls) { return H5T_STD_U8LE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STD_1U8LE(JNIEnv *env, jclass cls) +{ + return H5T_STD_U8LE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1ERROR(JNIEnv *env, jclass cls) { return H5T_STR_ERROR; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1ERROR(JNIEnv *env, jclass cls) +{ + return H5T_STR_ERROR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1NULLPAD(JNIEnv *env, jclass cls) { return H5T_STR_NULLPAD; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1NULLPAD(JNIEnv *env, jclass cls) +{ + return H5T_STR_NULLPAD; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1NULLTERM(JNIEnv *env, jclass cls) { return H5T_STR_NULLTERM; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1NULLTERM(JNIEnv *env, jclass cls) +{ + return H5T_STR_NULLTERM; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1RESERVED_110(JNIEnv *env, jclass cls) { return H5T_STR_RESERVED_10; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1RESERVED_110(JNIEnv *env, jclass cls) +{ + return H5T_STR_RESERVED_10; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1RESERVED_111(JNIEnv *env, jclass cls) { return H5T_STR_RESERVED_11; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1RESERVED_111(JNIEnv *env, jclass cls) +{ + return H5T_STR_RESERVED_11; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1RESERVED_112(JNIEnv *env, jclass cls) { return H5T_STR_RESERVED_12; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1RESERVED_112(JNIEnv *env, jclass cls) +{ + return H5T_STR_RESERVED_12; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1RESERVED_113(JNIEnv *env, jclass cls) { return H5T_STR_RESERVED_13; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1RESERVED_113(JNIEnv *env, jclass cls) +{ + return H5T_STR_RESERVED_13; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1RESERVED_114(JNIEnv *env, jclass cls) { return H5T_STR_RESERVED_14; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1RESERVED_114(JNIEnv *env, jclass cls) +{ + return H5T_STR_RESERVED_14; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1RESERVED_115(JNIEnv *env, jclass cls) { return H5T_STR_RESERVED_15; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1RESERVED_115(JNIEnv *env, jclass cls) +{ + return H5T_STR_RESERVED_15; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1RESERVED_13(JNIEnv *env, jclass cls) { return H5T_STR_RESERVED_3; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1RESERVED_13(JNIEnv *env, jclass cls) +{ + return H5T_STR_RESERVED_3; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1RESERVED_14(JNIEnv *env, jclass cls) { return H5T_STR_RESERVED_4; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1RESERVED_14(JNIEnv *env, jclass cls) +{ + return H5T_STR_RESERVED_4; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1RESERVED_15(JNIEnv *env, jclass cls) { return H5T_STR_RESERVED_5; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1RESERVED_15(JNIEnv *env, jclass cls) +{ + return H5T_STR_RESERVED_5; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1RESERVED_16(JNIEnv *env, jclass cls) { return H5T_STR_RESERVED_6; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1RESERVED_16(JNIEnv *env, jclass cls) +{ + return H5T_STR_RESERVED_6; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1RESERVED_17(JNIEnv *env, jclass cls) { return H5T_STR_RESERVED_7; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1RESERVED_17(JNIEnv *env, jclass cls) +{ + return H5T_STR_RESERVED_7; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1RESERVED_18(JNIEnv *env, jclass cls) { return H5T_STR_RESERVED_8; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1RESERVED_18(JNIEnv *env, jclass cls) +{ + return H5T_STR_RESERVED_8; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1RESERVED_19(JNIEnv *env, jclass cls) { return H5T_STR_RESERVED_9; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1RESERVED_19(JNIEnv *env, jclass cls) +{ + return H5T_STR_RESERVED_9; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1SPACEPAD(JNIEnv *env, jclass cls) { return H5T_STR_SPACEPAD; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STR_1SPACEPAD(JNIEnv *env, jclass cls) +{ + return H5T_STR_SPACEPAD; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1STRING(JNIEnv *env, jclass cls) { return H5T_STRING; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1STRING(JNIEnv *env, jclass cls) +{ + return H5T_STRING; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1TIME(JNIEnv *env, jclass cls) { return H5T_TIME; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1TIME(JNIEnv *env, jclass cls) +{ + return H5T_TIME; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1UNIX_1D32BE(JNIEnv *env, jclass cls) { return H5T_UNIX_D32BE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1UNIX_1D32BE(JNIEnv *env, jclass cls) +{ + return H5T_UNIX_D32BE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1UNIX_1D32LE(JNIEnv *env, jclass cls) { return H5T_UNIX_D32LE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1UNIX_1D32LE(JNIEnv *env, jclass cls) +{ + return H5T_UNIX_D32LE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1UNIX_1D64BE(JNIEnv *env, jclass cls) { return H5T_UNIX_D64BE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1UNIX_1D64BE(JNIEnv *env, jclass cls) +{ + return H5T_UNIX_D64BE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1UNIX_1D64LE(JNIEnv *env, jclass cls) { return H5T_UNIX_D64LE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1UNIX_1D64LE(JNIEnv *env, jclass cls) +{ + return H5T_UNIX_D64LE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1VARIABLE(JNIEnv *env, jclass cls) { return (int)H5T_VARIABLE; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1VARIABLE(JNIEnv *env, jclass cls) +{ + return (int)H5T_VARIABLE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1VLEN(JNIEnv *env, jclass cls) { return H5T_VLEN; } +Java_hdf_hdf5lib_HDF5Constants_H5T_1VLEN(JNIEnv *env, jclass cls) +{ + return H5T_VLEN; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5T_1VL_1T(JNIEnv *env, jclass cls) { return sizeof(hvl_t); } +Java_hdf_hdf5lib_HDF5Constants_H5T_1VL_1T(JNIEnv *env, jclass cls) +{ + return sizeof(hvl_t); +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5VL_1CAP_1FLAG_1NONE(JNIEnv *env, jclass cls) { return H5VL_CAP_FLAG_NONE; } +Java_hdf_hdf5lib_HDF5Constants_H5VL_1CAP_1FLAG_1NONE(JNIEnv *env, jclass cls) +{ + return H5VL_CAP_FLAG_NONE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5VL_1CAP_1FLAG_1THREADSAFE(JNIEnv *env, jclass cls) { return H5VL_CAP_FLAG_THREADSAFE; } +Java_hdf_hdf5lib_HDF5Constants_H5VL_1CAP_1FLAG_1THREADSAFE(JNIEnv *env, jclass cls) +{ + return H5VL_CAP_FLAG_THREADSAFE; +} JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5VL_1NATIVE(JNIEnv *env, jclass cls) { return H5VL_NATIVE; } +Java_hdf_hdf5lib_HDF5Constants_H5VL_1NATIVE(JNIEnv *env, jclass cls) +{ + return H5VL_NATIVE; +} JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5VL_1NATIVE_1NAME(JNIEnv *env, jclass cls) { return (jstring)ENVPTR->NewStringUTF(ENVONLY, H5VL_NATIVE_NAME); } +Java_hdf_hdf5lib_HDF5Constants_H5VL_1NATIVE_1NAME(JNIEnv *env, jclass cls) +{ + return (jstring)ENVPTR->NewStringUTF(ENVONLY, H5VL_NATIVE_NAME); +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5VL_1NATIVE_1VALUE(JNIEnv *env, jclass cls) { return H5VL_NATIVE_VALUE; } +Java_hdf_hdf5lib_HDF5Constants_H5VL_1NATIVE_1VALUE(JNIEnv *env, jclass cls) +{ + return H5VL_NATIVE_VALUE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5VL_1NATIVE_1VERSION(JNIEnv *env, jclass cls) { return H5VL_NATIVE_VERSION; } +Java_hdf_hdf5lib_HDF5Constants_H5VL_1NATIVE_1VERSION(JNIEnv *env, jclass cls) +{ + return H5VL_NATIVE_VERSION; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5_1VOL_1INVALID(JNIEnv *env, jclass cls) { return H5_VOL_INVALID; } +Java_hdf_hdf5lib_HDF5Constants_H5_1VOL_1INVALID(JNIEnv *env, jclass cls) +{ + return H5_VOL_INVALID; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5_1VOL_1NATIVE(JNIEnv *env, jclass cls) { return H5_VOL_NATIVE; } +Java_hdf_hdf5lib_HDF5Constants_H5_1VOL_1NATIVE(JNIEnv *env, jclass cls) +{ + return H5_VOL_NATIVE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5_1VOL_1RESERVED(JNIEnv *env, jclass cls) { return H5_VOL_RESERVED; } +Java_hdf_hdf5lib_HDF5Constants_H5_1VOL_1RESERVED(JNIEnv *env, jclass cls) +{ + return H5_VOL_RESERVED; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5_1VOL_1MAX(JNIEnv *env, jclass cls) { return H5_VOL_MAX; } +Java_hdf_hdf5lib_HDF5Constants_H5_1VOL_1MAX(JNIEnv *env, jclass cls) +{ + return H5_VOL_MAX; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1CB_1CONT(JNIEnv *env, jclass cls) { return H5Z_CB_CONT; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1CB_1CONT(JNIEnv *env, jclass cls) +{ + return H5Z_CB_CONT; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1CB_1ERROR(JNIEnv *env, jclass cls) { return H5Z_CB_ERROR; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1CB_1ERROR(JNIEnv *env, jclass cls) +{ + return H5Z_CB_ERROR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1CB_1FAIL(JNIEnv *env, jclass cls) { return H5Z_CB_FAIL; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1CB_1FAIL(JNIEnv *env, jclass cls) +{ + return H5Z_CB_FAIL; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1CB_1NO(JNIEnv *env, jclass cls) { return H5Z_CB_NO; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1CB_1NO(JNIEnv *env, jclass cls) +{ + return H5Z_CB_NO; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1DISABLE_1EDC(JNIEnv *env, jclass cls) { return H5Z_DISABLE_EDC; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1DISABLE_1EDC(JNIEnv *env, jclass cls) +{ + return H5Z_DISABLE_EDC; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1ENABLE_1EDC(JNIEnv *env, jclass cls) { return H5Z_ENABLE_EDC; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1ENABLE_1EDC(JNIEnv *env, jclass cls) +{ + return H5Z_ENABLE_EDC; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1ERROR_1EDC(JNIEnv *env, jclass cls) { return H5Z_ERROR_EDC; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1ERROR_1EDC(JNIEnv *env, jclass cls) +{ + return H5Z_ERROR_EDC; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1FILTER_1CONFIG_1DECODE_1ENABLED(JNIEnv *env, jclass cls) { return H5Z_FILTER_CONFIG_DECODE_ENABLED; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1FILTER_1CONFIG_1DECODE_1ENABLED(JNIEnv *env, jclass cls) +{ + return H5Z_FILTER_CONFIG_DECODE_ENABLED; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1FILTER_1CONFIG_1ENCODE_1ENABLED(JNIEnv *env, jclass cls) { return H5Z_FILTER_CONFIG_ENCODE_ENABLED; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1FILTER_1CONFIG_1ENCODE_1ENABLED(JNIEnv *env, jclass cls) +{ + return H5Z_FILTER_CONFIG_ENCODE_ENABLED; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1FILTER_1DEFLATE(JNIEnv *env, jclass cls) { return H5Z_FILTER_DEFLATE; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1FILTER_1DEFLATE(JNIEnv *env, jclass cls) +{ + return H5Z_FILTER_DEFLATE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1FILTER_1ERROR(JNIEnv *env, jclass cls) { return H5Z_FILTER_ERROR; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1FILTER_1ERROR(JNIEnv *env, jclass cls) +{ + return H5Z_FILTER_ERROR; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1FILTER_1FLETCHER32(JNIEnv *env, jclass cls) { return H5Z_FILTER_FLETCHER32; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1FILTER_1FLETCHER32(JNIEnv *env, jclass cls) +{ + return H5Z_FILTER_FLETCHER32; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1FILTER_1MAX(JNIEnv *env, jclass cls) { return H5Z_FILTER_MAX; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1FILTER_1MAX(JNIEnv *env, jclass cls) +{ + return H5Z_FILTER_MAX; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1FILTER_1NBIT(JNIEnv *env, jclass cls) {return H5Z_FILTER_NBIT; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1FILTER_1NBIT(JNIEnv *env, jclass cls) +{ + return H5Z_FILTER_NBIT; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1FILTER_1NONE(JNIEnv *env, jclass cls) { return H5Z_FILTER_NONE; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1FILTER_1NONE(JNIEnv *env, jclass cls) +{ + return H5Z_FILTER_NONE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1FILTER_1RESERVED(JNIEnv *env, jclass cls) { return H5Z_FILTER_RESERVED; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1FILTER_1RESERVED(JNIEnv *env, jclass cls) +{ + return H5Z_FILTER_RESERVED; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1FILTER_1SCALEOFFSET(JNIEnv *env, jclass cls){ return H5Z_FILTER_SCALEOFFSET; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1FILTER_1SCALEOFFSET(JNIEnv *env, jclass cls) +{ + return H5Z_FILTER_SCALEOFFSET; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1FILTER_1SHUFFLE(JNIEnv *env, jclass cls) { return H5Z_FILTER_SHUFFLE; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1FILTER_1SHUFFLE(JNIEnv *env, jclass cls) +{ + return H5Z_FILTER_SHUFFLE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1FILTER_1SZIP(JNIEnv *env, jclass cls) { return H5Z_FILTER_SZIP; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1FILTER_1SZIP(JNIEnv *env, jclass cls) +{ + return H5Z_FILTER_SZIP; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1FLAG_1DEFMASK(JNIEnv *env, jclass cls) { return H5Z_FLAG_DEFMASK; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1FLAG_1DEFMASK(JNIEnv *env, jclass cls) +{ + return H5Z_FLAG_DEFMASK; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1FLAG_1INVMASK(JNIEnv *env, jclass cls) { return H5Z_FLAG_INVMASK; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1FLAG_1INVMASK(JNIEnv *env, jclass cls) +{ + return H5Z_FLAG_INVMASK; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1FLAG_1MANDATORY(JNIEnv *env, jclass cls) { return H5Z_FLAG_MANDATORY; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1FLAG_1MANDATORY(JNIEnv *env, jclass cls) +{ + return H5Z_FLAG_MANDATORY; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1FLAG_1OPTIONAL(JNIEnv *env, jclass cls) { return H5Z_FLAG_OPTIONAL; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1FLAG_1OPTIONAL(JNIEnv *env, jclass cls) +{ + return H5Z_FLAG_OPTIONAL; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1FLAG_1REVERSE(JNIEnv *env, jclass cls) { return H5Z_FLAG_REVERSE; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1FLAG_1REVERSE(JNIEnv *env, jclass cls) +{ + return H5Z_FLAG_REVERSE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1FLAG_1SKIP_1EDC(JNIEnv *env, jclass cls) { return H5Z_FLAG_SKIP_EDC; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1FLAG_1SKIP_1EDC(JNIEnv *env, jclass cls) +{ + return H5Z_FLAG_SKIP_EDC; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1MAX_1NFILTERS(JNIEnv *env, jclass cls) { return H5Z_MAX_NFILTERS; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1MAX_1NFILTERS(JNIEnv *env, jclass cls) +{ + return H5Z_MAX_NFILTERS; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1NO_1EDC(JNIEnv *env, jclass cls) { return H5Z_NO_EDC; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1NO_1EDC(JNIEnv *env, jclass cls) +{ + return H5Z_NO_EDC; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1SO_1INT_1MINBITS_1DEFAULT(JNIEnv *env, jclass cls) { return H5Z_SO_INT_MINBITS_DEFAULT; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1SO_1INT_1MINBITS_1DEFAULT(JNIEnv *env, jclass cls) +{ + return H5Z_SO_INT_MINBITS_DEFAULT; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1SO_1FLOAT_1DSCALE(JNIEnv *env, jclass cls){return H5Z_SO_FLOAT_DSCALE; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1SO_1FLOAT_1DSCALE(JNIEnv *env, jclass cls) +{ + return H5Z_SO_FLOAT_DSCALE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1SO_1FLOAT_1ESCALE(JNIEnv *env, jclass cls){return H5Z_SO_FLOAT_ESCALE; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1SO_1FLOAT_1ESCALE(JNIEnv *env, jclass cls) +{ + return H5Z_SO_FLOAT_ESCALE; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1SO_1INT(JNIEnv *env, jclass cls){return H5Z_SO_INT; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1SO_1INT(JNIEnv *env, jclass cls) +{ + return H5Z_SO_INT; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1SHUFFLE_1USER_1NPARMS(JNIEnv *env, jclass cls) { return H5Z_SHUFFLE_USER_NPARMS; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1SHUFFLE_1USER_1NPARMS(JNIEnv *env, jclass cls) +{ + return H5Z_SHUFFLE_USER_NPARMS; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1SHUFFLE_1TOTAL_1NPARMS(JNIEnv *env, jclass cls) { return H5Z_SHUFFLE_TOTAL_NPARMS; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1SHUFFLE_1TOTAL_1NPARMS(JNIEnv *env, jclass cls) +{ + return H5Z_SHUFFLE_TOTAL_NPARMS; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1SZIP_1USER_1NPARMS(JNIEnv *env, jclass cls) { return H5Z_SZIP_USER_NPARMS; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1SZIP_1USER_1NPARMS(JNIEnv *env, jclass cls) +{ + return H5Z_SZIP_USER_NPARMS; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1SZIP_1TOTAL_1NPARMS(JNIEnv *env, jclass cls) { return H5Z_SZIP_TOTAL_NPARMS; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1SZIP_1TOTAL_1NPARMS(JNIEnv *env, jclass cls) +{ + return H5Z_SZIP_TOTAL_NPARMS; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1SZIP_1PARM_1MASK(JNIEnv *env, jclass cls) { return H5Z_SZIP_PARM_MASK; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1SZIP_1PARM_1MASK(JNIEnv *env, jclass cls) +{ + return H5Z_SZIP_PARM_MASK; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1SZIP_1PARM_1PPB(JNIEnv *env, jclass cls) { return H5Z_SZIP_PARM_PPB; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1SZIP_1PARM_1PPB(JNIEnv *env, jclass cls) +{ + return H5Z_SZIP_PARM_PPB; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1SZIP_1PARM_1BPP(JNIEnv *env, jclass cls) { return H5Z_SZIP_PARM_BPP; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1SZIP_1PARM_1BPP(JNIEnv *env, jclass cls) +{ + return H5Z_SZIP_PARM_BPP; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1SZIP_1PARM_1PPS(JNIEnv *env, jclass cls) { return H5Z_SZIP_PARM_PPS; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1SZIP_1PARM_1PPS(JNIEnv *env, jclass cls) +{ + return H5Z_SZIP_PARM_PPS; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1NBIT_1USER_1NPARMS(JNIEnv *env, jclass cls) { return H5Z_NBIT_USER_NPARMS; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1NBIT_1USER_1NPARMS(JNIEnv *env, jclass cls) +{ + return H5Z_NBIT_USER_NPARMS; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1SCALEOFFSET_1USER_1NPARMS(JNIEnv *env, jclass cls) { return H5Z_SCALEOFFSET_USER_NPARMS; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1SCALEOFFSET_1USER_1NPARMS(JNIEnv *env, jclass cls) +{ + return H5Z_SCALEOFFSET_USER_NPARMS; +} JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_HDF5Constants_H5Z_1FILTER_1ALL(JNIEnv *env, jclass cls) { return H5Z_FILTER_ALL; } +Java_hdf_hdf5lib_HDF5Constants_H5Z_1FILTER_1ALL(JNIEnv *env, jclass cls) +{ + return H5Z_FILTER_ALL; +} -#pragma GCC diagnostic pop +H5_GCC_CLANG_DIAG_ON("missing-prototypes") +H5_GCC_CLANG_DIAG_ON("unused-parameter") #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ - diff --git a/java/src/jni/h5Imp.c b/java/src/jni/h5Imp.c index f0dd691..691c98c 100644 --- a/java/src/jni/h5Imp.c +++ b/java/src/jni/h5Imp.c @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -46,8 +46,7 @@ extern "C" { * Signature: ()I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5open - (JNIEnv *env, jclass clss) +Java_hdf_hdf5lib_H5_H5open(JNIEnv *env, jclass clss) { herr_t retVal = FAIL; @@ -66,8 +65,7 @@ done: * Signature: ()I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5close - (JNIEnv *env, jclass clss) +Java_hdf_hdf5lib_H5_H5close(JNIEnv *env, jclass clss) { herr_t retVal = FAIL; @@ -86,8 +84,7 @@ done: * Signature: ()I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5dont_1atexit - (JNIEnv *env, jclass clss) +Java_hdf_hdf5lib_H5_H5dont_1atexit(JNIEnv *env, jclass clss) { herr_t retVal = FAIL; @@ -106,21 +103,22 @@ done: * Signature: ([I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5get_1libversion - (JNIEnv *env, jclass clss, jintArray libversion) +Java_hdf_hdf5lib_H5_H5get_1libversion(JNIEnv *env, jclass clss, jintArray libversion) { - jboolean libversionArrayIsCopy; - int *libversionArray = NULL; - herr_t status = FAIL; + jboolean libversionArrayIsCopy; + int * libversionArray = NULL; + herr_t status = FAIL; UNUSED(clss); if (libversion == NULL) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5get_libversion: libversion is NULL"); - PIN_INT_ARRAY(ENVONLY, libversion, libversionArray, &libversionArrayIsCopy, "H5get_libversion: libversion input not pinned"); + PIN_INT_ARRAY(ENVONLY, libversion, libversionArray, &libversionArrayIsCopy, + "H5get_libversion: libversion input not pinned"); - if ((status = H5get_libversion((unsigned *) &(libversionArray[0]), (unsigned *) &(libversionArray[1]), (unsigned *) &(libversionArray[2]))) < 0) + if ((status = H5get_libversion((unsigned *)&(libversionArray[0]), (unsigned *)&(libversionArray[1]), + (unsigned *)&(libversionArray[2]))) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -136,8 +134,7 @@ done: * Signature: (III)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5check_1version - (JNIEnv *env, jclass clss, jint majnum, jint minnum, jint relnum) +Java_hdf_hdf5lib_H5_H5check_1version(JNIEnv *env, jclass clss, jint majnum, jint minnum, jint relnum) { UNUSED(env); UNUSED(clss); @@ -152,8 +149,7 @@ Java_hdf_hdf5lib_H5_H5check_1version * */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5garbage_1collect - (JNIEnv *env, jclass clss) +Java_hdf_hdf5lib_H5_H5garbage_1collect(JNIEnv *env, jclass clss) { herr_t retVal = FAIL; @@ -172,16 +168,16 @@ done: * Signature: (IIIIII)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5set_1free_1list_1limits - (JNIEnv *env, jclass clss, jint reg_global_lim, jint reg_list_lim, - jint arr_global_lim, jint arr_list_lim, jint blk_global_lim, jint blk_list_lim ) +Java_hdf_hdf5lib_H5_H5set_1free_1list_1limits(JNIEnv *env, jclass clss, jint reg_global_lim, + jint reg_list_lim, jint arr_global_lim, jint arr_list_lim, + jint blk_global_lim, jint blk_list_lim) { herr_t retVal = FAIL; UNUSED(clss); - if ((retVal = H5set_free_list_limits((int)reg_global_lim, (int)reg_list_lim, - (int)arr_global_lim, (int)arr_list_lim, (int)blk_global_lim, (int)blk_list_lim)) < 0) + if ((retVal = H5set_free_list_limits((int)reg_global_lim, (int)reg_list_lim, (int)arr_global_lim, + (int)arr_list_lim, (int)blk_global_lim, (int)blk_list_lim)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -194,8 +190,7 @@ done: * Signature: ()Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5is_1library_1threadsafe - (JNIEnv *env, jclass clss) +Java_hdf_hdf5lib_H5_H5is_1library_1threadsafe(JNIEnv *env, jclass clss) { hbool_t is_ts = false; @@ -208,7 +203,6 @@ done: return (jboolean)is_ts; } /* end Java_hdf_hdf5lib_H5_H5is_1library_1threadsafe */ - #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ diff --git a/java/src/jni/h5Imp.h b/java/src/jni/h5Imp.h index 756b8bb..8ab7662 100644 --- a/java/src/jni/h5Imp.h +++ b/java/src/jni/h5Imp.h @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -14,8 +13,8 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5 */ -#ifndef _Included_hdf_hdf5lib_H5_H5 -#define _Included_hdf_hdf5lib_H5_H5 +#ifndef Included_hdf_hdf5lib_H5_H5 +#define Included_hdf_hdf5lib_H5_H5 #ifdef __cplusplus extern "C" { @@ -26,45 +25,35 @@ extern "C" { * Method: H5open * Signature: ()I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5open - (JNIEnv *, jclass); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5open(JNIEnv *, jclass); /* * Class: hdf_hdf5lib_H5 * Method: H5close * Signature: ()I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5close - (JNIEnv *, jclass); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5close(JNIEnv *, jclass); /* * Class: hdf_hdf5lib_H5 * Method: H5dont_atexit * Signature: ()I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5dont_1atexit - (JNIEnv *, jclass); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5dont_1atexit(JNIEnv *, jclass); /* * Class: hdf_hdf5lib_H5 * Method: H5get_libversion * Signature: ([I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5get_1libversion - (JNIEnv *, jclass, jintArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5get_1libversion(JNIEnv *, jclass, jintArray); /* * Class: hdf_hdf5lib_H5 * Method: H5check_version * Signature: (III)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5check_1version - (JNIEnv *, jclass, jint, jint, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5check_1version(JNIEnv *, jclass, jint, jint, jint); /* * Class: hdf_hdf5lib_H5 @@ -72,30 +61,25 @@ Java_hdf_hdf5lib_H5_H5check_1version * Signature: ()I * */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5garbage_1collect - (JNIEnv *, jclass); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5garbage_1collect(JNIEnv *, jclass); /* * Class: hdf_hdf5lib_H5 * Method: H5set_free_list_limits * Signature: (IIIIII)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5set_1free_1list_1limits - (JNIEnv *, jclass, jint, jint, jint, jint, jint, jint ); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5set_1free_1list_1limits(JNIEnv *, jclass, jint, jint, jint, jint, + jint, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5is_library_threadsafe * Signature: ()Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5is_1library_1threadsafe - (JNIEnv *, jclass); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5is_1library_1threadsafe(JNIEnv *, jclass); #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5 */ +#endif /* Included_hdf_hdf5lib_H5_H5 */ diff --git a/java/src/jni/h5aImp.c b/java/src/jni/h5aImp.c index eaa356e..6bf86d0 100644 --- a/java/src/jni/h5aImp.c +++ b/java/src/jni/h5aImp.c @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -54,19 +54,17 @@ static herr_t H5A_iterate_cb(hid_t g_id, const char *name, const H5A_info_t *inf /* Local Macros */ /********************/ - /* * Class: hdf_hdf5lib_H5 * Method: H5Acreate * Signature: (JLjava/lang/String;JJJ)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Acreate - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong type_id, - jlong space_id, jlong create_plist) +Java_hdf_hdf5lib_H5__1H5Acreate(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong type_id, + jlong space_id, jlong create_plist) { const char *attrName = NULL; - hid_t attr_id = H5I_INVALID_HID; + hid_t attr_id = H5I_INVALID_HID; UNUSED(clss); @@ -75,7 +73,8 @@ Java_hdf_hdf5lib_H5__1H5Acreate PIN_JAVA_STRING(ENVONLY, name, attrName, NULL, "H5Acreate: attribute name not pinned"); - if ((attr_id = H5Acreate2((hid_t)loc_id, attrName, (hid_t)type_id, (hid_t)space_id, (hid_t)create_plist, (hid_t)H5P_DEFAULT)) < 0) + if ((attr_id = H5Acreate2((hid_t)loc_id, attrName, (hid_t)type_id, (hid_t)space_id, (hid_t)create_plist, + (hid_t)H5P_DEFAULT)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -91,25 +90,34 @@ done: * Signature: (JLjava/lang/String;)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Aopen_1name - (JNIEnv *env, jclass clss, jlong loc_id, jstring name) +Java_hdf_hdf5lib_H5__1H5Aopen_1name(JNIEnv *env, jclass clss, jlong loc_id, jstring name) { +#ifndef H5_NO_DEPRECATED_SYMBOLS const char *attrName = NULL; - hid_t attr_id = H5I_INVALID_HID; +#endif + hid_t attr_id = H5I_INVALID_HID; UNUSED(clss); +#ifdef H5_NO_DEPRECATED_SYMBOLS + UNUSED(loc_id); + UNUSED(name); + H5_UNIMPLEMENTED(ENVONLY, "H5Aopen_name: not implemented"); +#else if (NULL == name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aopen_name: attribute name is null"); PIN_JAVA_STRING(ENVONLY, name, attrName, NULL, "H5Aopen_name: attribute name not pinned"); - if((attr_id = H5Aopen_name((hid_t)loc_id, attrName)) < 0) + if ((attr_id = H5Aopen_name((hid_t)loc_id, attrName)) < 0) H5_LIBRARY_ERROR(ENVONLY); +#endif done: +#ifndef H5_NO_DEPRECATED_SYMBOLS if (attrName) UNPIN_JAVA_STRING(ENVONLY, name, attrName); +#endif return (jlong)attr_id; } /* end Java_hdf_hdf5lib_H5__1H5Aopen_1name */ @@ -120,15 +128,20 @@ done: * Signature: (JI)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Aopen_1idx - (JNIEnv *env, jclass clss, jlong loc_id, jint idx) +Java_hdf_hdf5lib_H5__1H5Aopen_1idx(JNIEnv *env, jclass clss, jlong loc_id, jint idx) { hid_t attr_id = H5I_INVALID_HID; UNUSED(clss); - if ((attr_id = H5Aopen_idx((hid_t) loc_id, (unsigned int) idx)) < 0) +#ifdef H5_NO_DEPRECATED_SYMBOLS + UNUSED(loc_id); + UNUSED(idx); + H5_UNIMPLEMENTED(ENVONLY, "H5Aopen_idx: not implemented"); +#else + if ((attr_id = H5Aopen_idx((hid_t)loc_id, (unsigned int)idx)) < 0) H5_LIBRARY_ERROR(ENVONLY); +#endif done: return (jlong)attr_id; @@ -140,13 +153,13 @@ done: * Signature: (JJ[BZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aread - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jbyteArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Aread(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jbyteArray buf, + jboolean isCriticalPinning) { - jboolean readBufIsCopy; - jbyte *readBuf = NULL; - htri_t data_class; - herr_t status = FAIL; + jboolean readBufIsCopy; + jbyte * readBuf = NULL; + htri_t data_class; + herr_t status = FAIL; UNUSED(clss); @@ -167,7 +180,8 @@ Java_hdf_hdf5lib_H5_H5Aread H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread: variable length type not supported"); if (isCriticalPinning) { - PIN_BYTE_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread: read buffer not critically pinned"); + PIN_BYTE_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, + "H5Aread: read buffer not critically pinned"); } else { PIN_BYTE_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread: read buffer not pinned"); @@ -195,13 +209,13 @@ done: * Signature: (JJ[BZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Awrite - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jbyteArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Awrite(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jbyteArray buf, + jboolean isCriticalPinning) { - jboolean writeBufIsCopy; - jbyte *writeBuf = NULL; - htri_t data_class; - herr_t status = FAIL; + jboolean writeBufIsCopy; + jbyte * writeBuf = NULL; + htri_t data_class; + herr_t status = FAIL; UNUSED(clss); @@ -222,7 +236,8 @@ Java_hdf_hdf5lib_H5_H5Awrite H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite: variable length type not supported"); if (isCriticalPinning) { - PIN_BYTE_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite: write buffer not critically pinned"); + PIN_BYTE_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, + "H5Awrite: write buffer not critically pinned"); } else { PIN_BYTE_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite: write buffer not pinned"); @@ -250,13 +265,13 @@ done: * Signature: (JJ[SZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aread_1short - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jshortArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Aread_1short(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, + jshortArray buf, jboolean isCriticalPinning) { - jboolean readBufIsCopy; - jshort *readBuf = NULL; - htri_t data_class; - herr_t status = FAIL; + jboolean readBufIsCopy; + jshort * readBuf = NULL; + htri_t data_class; + herr_t status = FAIL; UNUSED(clss); @@ -277,7 +292,8 @@ Java_hdf_hdf5lib_H5_H5Aread_1short H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_short: variable length type not supported"); if (isCriticalPinning) { - PIN_SHORT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_short: read buffer not critically pinned"); + PIN_SHORT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, + "H5Aread_short: read buffer not critically pinned"); } else { PIN_SHORT_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_short: read buffer not pinned"); @@ -305,13 +321,13 @@ done: * Signature: (JJ[SZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Awrite_1short - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jshortArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Awrite_1short(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, + jshortArray buf, jboolean isCriticalPinning) { - jboolean writeBufIsCopy; - jshort *writeBuf = NULL; - htri_t data_class; - herr_t status = FAIL; + jboolean writeBufIsCopy; + jshort * writeBuf = NULL; + htri_t data_class; + herr_t status = FAIL; UNUSED(clss); @@ -332,7 +348,8 @@ Java_hdf_hdf5lib_H5_H5Awrite_1short H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_short: variable length type not supported"); if (isCriticalPinning) { - PIN_SHORT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_short: write buffer not critically pinned"); + PIN_SHORT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, + "H5Awrite_short: write buffer not critically pinned"); } else { PIN_SHORT_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_short: write buffer not pinned"); @@ -360,13 +377,13 @@ done: * Signature: (JJ[IZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aread_1int - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jintArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Aread_1int(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jintArray buf, + jboolean isCriticalPinning) { - jboolean readBufIsCopy; - htri_t data_class; - jint *readBuf = NULL; - herr_t status = FAIL; + jboolean readBufIsCopy; + htri_t data_class; + jint * readBuf = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -387,7 +404,8 @@ Java_hdf_hdf5lib_H5_H5Aread_1int H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_int: variable length type not supported"); if (isCriticalPinning) { - PIN_INT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_int: read buffer not critically pinned"); + PIN_INT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, + "H5Aread_int: read buffer not critically pinned"); } else { PIN_INT_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_int: read buffer not pinned"); @@ -415,13 +433,13 @@ done: * Signature: (JJ[IZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Awrite_1int - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jintArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Awrite_1int(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jintArray buf, + jboolean isCriticalPinning) { - jboolean writeBufIsCopy; - jint *writeBuf = NULL; - htri_t data_class; - herr_t status = FAIL; + jboolean writeBufIsCopy; + jint * writeBuf = NULL; + htri_t data_class; + herr_t status = FAIL; UNUSED(clss); @@ -442,7 +460,8 @@ Java_hdf_hdf5lib_H5_H5Awrite_1int H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_int: variable length type not supported"); if (isCriticalPinning) { - PIN_INT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_int: write buffer not critically pinned"); + PIN_INT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, + "H5Awrite_int: write buffer not critically pinned"); } else { PIN_INT_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_int: write buffer not pinned"); @@ -470,13 +489,13 @@ done: * Signature: (JJ[JZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aread_1long - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jlongArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Aread_1long(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jlongArray buf, + jboolean isCriticalPinning) { - jboolean readBufIsCopy; - jlong *readBuf = NULL; - htri_t data_class; - herr_t status = FAIL; + jboolean readBufIsCopy; + jlong * readBuf = NULL; + htri_t data_class; + herr_t status = FAIL; UNUSED(clss); @@ -497,7 +516,8 @@ Java_hdf_hdf5lib_H5_H5Aread_1long H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_long: variable length type not supported"); if (isCriticalPinning) { - PIN_LONG_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_long: read buffer not critically pinned"); + PIN_LONG_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, + "H5Aread_long: read buffer not critically pinned"); } else { PIN_LONG_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_long: read buffer not pinned"); @@ -525,13 +545,13 @@ done: * Signature: (JJ[JZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Awrite_1long - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jlongArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Awrite_1long(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jlongArray buf, + jboolean isCriticalPinning) { - jboolean writeBufIsCopy; - jlong *writeBuf = NULL; - htri_t data_class; - herr_t status = FAIL; + jboolean writeBufIsCopy; + jlong * writeBuf = NULL; + htri_t data_class; + herr_t status = FAIL; UNUSED(clss); @@ -552,7 +572,8 @@ Java_hdf_hdf5lib_H5_H5Awrite_1long H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_long: variable length type not supported"); if (isCriticalPinning) { - PIN_LONG_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_long: write buffer not critically pinned"); + PIN_LONG_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, + "H5Awrite_long: write buffer not critically pinned"); } else { PIN_LONG_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_long: write buffer not pinned"); @@ -580,13 +601,13 @@ done: * Signature: (JJ[FZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aread_1float - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jfloatArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Aread_1float(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, + jfloatArray buf, jboolean isCriticalPinning) { - jboolean readBufIsCopy; - jfloat *readBuf = NULL; - htri_t data_class; - herr_t status = FAIL; + jboolean readBufIsCopy; + jfloat * readBuf = NULL; + htri_t data_class; + herr_t status = FAIL; UNUSED(clss); @@ -607,7 +628,8 @@ Java_hdf_hdf5lib_H5_H5Aread_1float H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_float: variable length type not supported"); if (isCriticalPinning) { - PIN_FLOAT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_float: read buffer not critically pinned"); + PIN_FLOAT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, + "H5Aread_float: read buffer not critically pinned"); } else { PIN_FLOAT_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_float: read buffer not pinned"); @@ -635,13 +657,13 @@ done: * Signature: (JJ[FZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Awrite_1float - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jfloatArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Awrite_1float(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, + jfloatArray buf, jboolean isCriticalPinning) { - jboolean writeBufIsCopy; - jfloat *writeBuf = NULL; - htri_t data_class; - herr_t status = FAIL; + jboolean writeBufIsCopy; + jfloat * writeBuf = NULL; + htri_t data_class; + herr_t status = FAIL; UNUSED(clss); @@ -662,7 +684,8 @@ Java_hdf_hdf5lib_H5_H5Awrite_1float H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_float: variable length type not supported"); if (isCriticalPinning) { - PIN_FLOAT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_float: write buffer not critically pinned"); + PIN_FLOAT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, + "H5Awrite_float: write buffer not critically pinned"); } else { PIN_FLOAT_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_float: write buffer not pinned"); @@ -690,13 +713,13 @@ done: * Signature: (JJ[DZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aread_1double - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jdoubleArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Aread_1double(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, + jdoubleArray buf, jboolean isCriticalPinning) { - jboolean readBufIsCopy; - jdouble *readBuf = NULL; - htri_t data_class; - herr_t status = FAIL; + jboolean readBufIsCopy; + jdouble *readBuf = NULL; + htri_t data_class; + herr_t status = FAIL; UNUSED(clss); @@ -717,7 +740,8 @@ Java_hdf_hdf5lib_H5_H5Aread_1double H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_double: variable length type not supported"); if (isCriticalPinning) { - PIN_DOUBLE_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_double: read buffer not critically pinned"); + PIN_DOUBLE_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, + "H5Aread_double: read buffer not critically pinned"); } else { PIN_DOUBLE_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Aread_double: read buffer not pinned"); @@ -745,13 +769,13 @@ done: * Signature: (JJ[DZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Awrite_1double - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jdoubleArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Awrite_1double(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, + jdoubleArray buf, jboolean isCriticalPinning) { - jboolean writeBufIsCopy; - jdouble *writeBuf = NULL; - htri_t data_class; - herr_t status = FAIL; + jboolean writeBufIsCopy; + jdouble *writeBuf = NULL; + htri_t data_class; + herr_t status = FAIL; UNUSED(clss); @@ -772,7 +796,8 @@ Java_hdf_hdf5lib_H5_H5Awrite_1double H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Awrite_double: variable length type not supported"); if (isCriticalPinning) { - PIN_DOUBLE_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_double: write buffer not critically pinned"); + PIN_DOUBLE_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, + "H5Awrite_double: write buffer not critically pinned"); } else { PIN_DOUBLE_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Awrite_double: write buffer not pinned"); @@ -800,16 +825,16 @@ done: * Signature: (JJ[Ljava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aread_1string - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray j_buf) +Java_hdf_hdf5lib_H5_H5Aread_1string(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, + jobjectArray j_buf) { - jstring jstr; - size_t str_len; - size_t pos; - jsize i, n; - char *c_buf = NULL; - char *cstr = NULL; - herr_t status = FAIL; + jstring jstr; + size_t str_len; + size_t pos; + jsize i, n; + char * c_buf = NULL; + char * cstr = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -824,22 +849,23 @@ Java_hdf_hdf5lib_H5_H5Aread_1string if (!(str_len = H5Tget_size((hid_t)mem_type_id))) H5_LIBRARY_ERROR(ENVONLY); - if (NULL == (cstr = (char *) HDmalloc(str_len + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Aread_string: memory allocation failed"); + if (NULL == (cstr = (char *)HDmalloc(str_len + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Aread_string: memory allocation failed"); - if (NULL == (c_buf = (char *) HDmalloc((size_t)n * str_len))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Aread_string: memory allocation failed"); + if (NULL == (c_buf = (char *)HDmalloc((size_t)n * str_len))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Aread_string: memory allocation failed"); if ((status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, c_buf)) < 0) H5_LIBRARY_ERROR(ENVONLY); for (i = 0, pos = 0; i < n; i++) { - HDmemcpy(cstr, c_buf+pos, str_len); + HDmemcpy(cstr, c_buf + pos, str_len); cstr[str_len] = '\0'; if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, cstr))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Aread_string: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, "H5Aread_string: out of memory - unable to construct string from UTF characters"); } ENVPTR->SetObjectArrayElement(ENVONLY, j_buf, i, jstr); @@ -865,14 +891,14 @@ done: * Signature: (JJ[Ljava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Awrite_1string - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray j_buf) +Java_hdf_hdf5lib_H5_H5Awrite_1string(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, + jobjectArray j_buf) { const char *utf8 = NULL; jstring obj; size_t i, str_len; jsize n; - char *c_buf = NULL; + char * c_buf = NULL; herr_t status = FAIL; UNUSED(clss); @@ -888,11 +914,11 @@ Java_hdf_hdf5lib_H5_H5Awrite_1string if (!(str_len = H5Tget_size((hid_t)mem_type_id))) H5_LIBRARY_ERROR(ENVONLY); - if (NULL == (c_buf = (char *) HDmalloc((size_t)n * str_len))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Awrite_string: memory allocation failed"); + if (NULL == (c_buf = (char *)HDmalloc((size_t)n * str_len))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Awrite_string: memory allocation failed"); - for (i = 0; i < (size_t) n; i++) { - if (NULL == (obj = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)j_buf, (jsize) i))) { + for (i = 0; i < (size_t)n; i++) { + if (NULL == (obj = (jstring)ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)j_buf, (jsize)i))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); /* @@ -935,16 +961,15 @@ done: * Signature: (JJ[Ljava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5AreadVL - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf) +Java_hdf_hdf5lib_H5_H5AreadVL(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf) { H5T_class_t type_class; - htri_t isStr = 0; - htri_t isVlenStr = 0; - htri_t isComplex = 0; + htri_t isStr = 0; + htri_t isVlenStr = 0; + htri_t isComplex = 0; htri_t isComplex2 = 0; hid_t nested_tid = H5I_INVALID_HID; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -964,7 +989,7 @@ Java_hdf_hdf5lib_H5_H5AreadVL if ((num_members = H5Tget_nmembers(mem_type_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); - for (i = 0; i < (unsigned) num_members; i++) { + for (i = 0; i < (unsigned)num_members; i++) { if ((nested_tid = H5Tget_member_type((hid_t)mem_type_id, i)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1007,28 +1032,28 @@ done: * buffer in turn. */ static herr_t -H5AreadVL_str - (JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf) +H5AreadVL_str(JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf) { - jstring jstr; - jsize i, n; - char **strs = NULL; - herr_t status = FAIL; + jstring jstr; + jsize i, n; + char ** strs = NULL; + herr_t status = FAIL; if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5AreadVL_str: buf length < 0"); } - if (NULL == (strs = (char **) HDcalloc((size_t)n, sizeof(char *)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5AreadVL_str: failed to allocate variable length string read buffer"); + if (NULL == (strs = (char **)HDcalloc((size_t)n, sizeof(char *)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "H5AreadVL_str: failed to allocate variable length string read buffer"); if ((status = H5Aread(aid, tid, strs)) < 0) H5_LIBRARY_ERROR(ENVONLY); /* * When repeatedly reading a dataset with a large number of strs (e.g., 1,000,000 strings), - * H5Dvlen_reclaim() may crash on Windows because the Java GC will not be able to collect + * H5Treclaim() may crash on Windows because the Java GC will not be able to collect * free space in time. Instead, we use "H5free_memory(strs[i])" to free individual strings * once done. */ @@ -1065,18 +1090,17 @@ done: * in the output buffer in turn. */ static herr_t -H5AreadVL_asstr - (JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf) +H5AreadVL_asstr(JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf) { - hsize_t dims[H5S_MAX_RANK]; - jstring jstr; - h5str_t h5str; - size_t typeSize; - size_t i; - hid_t sid = H5I_INVALID_HID; - jsize n; - void *readBuf = NULL; - herr_t status = FAIL; + hsize_t dims[H5S_MAX_RANK]; + jstring jstr; + h5str_t h5str; + size_t typeSize; + size_t i; + hid_t sid = H5I_INVALID_HID; + jsize n; + void * readBuf = NULL; + herr_t status = FAIL; HDmemset(&h5str, 0, sizeof(h5str_t)); @@ -1094,7 +1118,7 @@ H5AreadVL_asstr H5_LIBRARY_ERROR(ENVONLY); if (NULL == (readBuf = HDcalloc((size_t)n, typeSize))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5AreadVL_asstr: failed to allocate read buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5AreadVL_asstr: failed to allocate read buffer"); if ((status = H5Aread(aid, tid, readBuf)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1103,19 +1127,19 @@ H5AreadVL_asstr h5str_new(&h5str, 4 * typeSize); if (!h5str.s) - H5_JNI_FATAL_ERROR(ENVONLY, "H5AreadVL_asstr: failed to allocate buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5AreadVL_asstr: failed to allocate buffer"); /* Convert each element to a char string */ - for (i = 0; i < (size_t) n; i++) { + for (i = 0; i < (size_t)n; i++) { h5str.s[0] = '\0'; - if (!h5str_sprintf(ENVONLY, &h5str, aid, tid, &(((char *) readBuf)[i * typeSize]), typeSize, 0)) + if (!h5str_sprintf(ENVONLY, &h5str, aid, tid, &(((char *)readBuf)[i * typeSize]), 0)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - ENVPTR->SetObjectArrayElement(ENVONLY, buf, (jsize) i, jstr); + ENVPTR->SetObjectArrayElement(ENVONLY, buf, (jsize)i, jstr); CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); ENVPTR->DeleteLocalRef(ENVONLY, jstr); @@ -1125,7 +1149,7 @@ done: if (h5str.s) h5str_free(&h5str); if (readBuf) { - H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, readBuf); + H5Treclaim(tid, sid, H5P_DEFAULT, readBuf); HDfree(readBuf); } if (sid >= 0) @@ -1140,16 +1164,15 @@ done: * Signature: (JJ[Ljava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5AwriteVL - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf) +Java_hdf_hdf5lib_H5_H5AwriteVL(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf) { H5T_class_t type_class; - htri_t isStr = 0; - htri_t isVlenStr = 0; - htri_t isComplex = 0; + htri_t isStr = 0; + htri_t isVlenStr = 0; + htri_t isComplex = 0; htri_t isComplex2 = 0; hid_t nested_tid = H5I_INVALID_HID; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -1169,7 +1192,7 @@ Java_hdf_hdf5lib_H5_H5AwriteVL if ((num_members = H5Tget_nmembers(mem_type_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); - for(i = 0; i < (unsigned) num_members; i++) { + for (i = 0; i < (unsigned)num_members; i++) { if ((nested_tid = H5Tget_member_type((hid_t)mem_type_id, i)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1211,28 +1234,28 @@ done: * The buffer of C-strings is then written to the HDF5 attribute specified. */ static herr_t -H5AwriteVL_str - (JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf) +H5AwriteVL_str(JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf) { - const char *utf8 = NULL; - jstring obj; - jsize size; - jint i; - char **writeBuf = NULL; - herr_t status = FAIL; - - if ((size = ENVPTR->GetArrayLength(ENVONLY, (jarray) buf)) < 0) { + const char *utf8 = NULL; + jstring obj; + jsize size; + jint i; + char ** writeBuf = NULL; + herr_t status = FAIL; + + if ((size = ENVPTR->GetArrayLength(ENVONLY, (jarray)buf)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5AwriteVL_str: buf length < 0"); } - if (NULL == (writeBuf = (char **) HDcalloc((size_t)size + 1, sizeof(char *)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5AwriteVL_str: failed to allocate variable length string write buffer") + if (NULL == (writeBuf = (char **)HDcalloc((size_t)size + 1, sizeof(char *)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "H5AwriteVL_str: failed to allocate variable length string write buffer"); for (i = 0; i < size; ++i) { jsize length; - if (NULL == (obj = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray) buf, i))) { + if (NULL == (obj = (jstring)ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)buf, i))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); /* @@ -1247,8 +1270,8 @@ H5AwriteVL_str PIN_JAVA_STRING(ENVONLY, obj, utf8, NULL, "H5AwriteVL_str: string not pinned"); - if (NULL == (writeBuf[i] = (char *) HDmalloc((size_t)length + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5AwriteVL_str: failed to allocate string buffer"); + if (NULL == (writeBuf[i] = (char *)HDmalloc((size_t)length + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5AwriteVL_str: failed to allocate string buffer"); HDstrncpy(writeBuf[i], utf8, (size_t)length); writeBuf[i][length] = '\0'; @@ -1283,18 +1306,17 @@ done: * elements is then written to the HDF5 attribute. */ static herr_t -H5AwriteVL_asstr - (JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf) +H5AwriteVL_asstr(JNIEnv *env, hid_t aid, hid_t tid, jobjectArray buf) { const char *utf8 = NULL; hsize_t dims[H5S_MAX_RANK]; - jstring jstr; + jstring jstr = NULL; size_t typeSize; size_t i; hid_t sid = H5I_INVALID_HID; jsize n; - void *writeBuf = NULL; - herr_t status = FAIL; + void * writeBuf = NULL; + herr_t status = FAIL; if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); @@ -1309,22 +1331,22 @@ H5AwriteVL_asstr H5_LIBRARY_ERROR(ENVONLY); if (NULL == (writeBuf = HDcalloc((size_t)n, typeSize))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5AwriteVL_asstr: failed to allocate write buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5AwriteVL_asstr: failed to allocate write buffer"); /* * When repeatedly writing a dataset with a large number of strs (e.g., 1,000,000 strings), - * H5Dvlen_reclaim() may crash on Windows because the Java GC will not be able to collect + * H5Treclaim() may crash on Windows because the Java GC will not be able to collect * free space in time. Instead, we use "H5free_memory(strs[i])" to free individual strings * once done. */ - for (i = 0; i < (size_t) n; i++) { - if (NULL == (jstr = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray) buf, (jsize) i))) { + for (i = 0; i < (size_t)n; i++) { + if (NULL == (jstr = (jstring)ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)buf, (jsize)i))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); /* * If the string object was NULL, skip it. */ - HDmemset(&(((char *) writeBuf)[i * typeSize]), 0, typeSize); + HDmemset(&(((char *)writeBuf)[i * typeSize]), 0, typeSize); continue; } @@ -1340,7 +1362,7 @@ H5AwriteVL_asstr * one before destroying it with h5str_convert. */ - if (!h5str_convert(ENVONLY, (char **) &utf8, aid, tid, &(((char *) writeBuf)[i * typeSize]), 0)) + if (!h5str_convert(ENVONLY, (char **)&utf8, aid, tid, &(((char *)writeBuf)[i * typeSize]), 0)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); UNPIN_JAVA_STRING(ENVONLY, jstr, utf8); @@ -1356,7 +1378,7 @@ done: if (utf8) UNPIN_JAVA_STRING(ENVONLY, jstr, utf8); if (writeBuf) { - H5Dvlen_reclaim(tid, sid, H5P_DEFAULT, writeBuf); + H5Treclaim(tid, sid, H5P_DEFAULT, writeBuf); HDfree(writeBuf); } if (sid >= 0) @@ -1371,14 +1393,14 @@ done: * Signature: (JJ[Ljava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aread_1reg_1ref - (JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf) +Java_hdf_hdf5lib_H5_H5Aread_1reg_1ref(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, + jobjectArray buf) { - hdset_reg_ref_t *ref_data = NULL; - h5str_t h5str; - jstring jstr; - jsize i, n; - herr_t status = FAIL; + H5R_ref_t *ref_data = NULL; + h5str_t h5str; + jstring jstr; + jsize i, n; + herr_t status = FAIL; UNUSED(clss); @@ -1389,8 +1411,8 @@ Java_hdf_hdf5lib_H5_H5Aread_1reg_1ref H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Aread_reg_ref: buf length < 0"); } - if (NULL == (ref_data = (hdset_reg_ref_t *) HDcalloc(1, (size_t)n * sizeof(hdset_reg_ref_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Aread_reg_ref: failed to allocate read buffer"); + if (NULL == (ref_data = (H5R_ref_t *)HDcalloc(1, (size_t)n * sizeof(H5R_ref_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Aread_reg_ref: failed to allocate read buffer"); if ((status = H5Aread((hid_t)attr_id, (hid_t)mem_type_id, ref_data)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1398,12 +1420,12 @@ Java_hdf_hdf5lib_H5_H5Aread_1reg_1ref h5str_new(&h5str, 1024); if (!h5str.s) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Aread_reg_ref: failed to allocate buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Aread_reg_ref: failed to allocate buffer"); for (i = 0; i < n; i++) { h5str.s[0] = '\0'; - if (!h5str_sprintf(ENVONLY, &h5str, (hid_t)attr_id, (hid_t)mem_type_id, ref_data[i], 0, 0)) + if (!h5str_sprintf(ENVONLY, &h5str, (hid_t)attr_id, (hid_t)mem_type_id, (void *)&ref_data[i], 0)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s))) @@ -1430,8 +1452,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Aget_1space - (JNIEnv *env, jclass clss, jlong attr_id) +Java_hdf_hdf5lib_H5__1H5Aget_1space(JNIEnv *env, jclass clss, jlong attr_id) { hid_t retVal = H5I_INVALID_HID; @@ -1450,8 +1471,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Aget_1type - (JNIEnv *env, jclass clss, jlong attr_id) +Java_hdf_hdf5lib_H5__1H5Aget_1type(JNIEnv *env, jclass clss, jlong attr_id) { hid_t retVal = H5I_INVALID_HID; @@ -1470,20 +1490,19 @@ done: * Signature: (J)Ljava/lang/String; */ JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Aget_1name - (JNIEnv *env, jclass clss, jlong attr_id) +Java_hdf_hdf5lib_H5_H5Aget_1name(JNIEnv *env, jclass clss, jlong attr_id) { - jstring str = NULL; - ssize_t buf_size; - char *attrName = NULL; + jstring str = NULL; + ssize_t buf_size; + char * attrName = NULL; UNUSED(clss); if ((buf_size = H5Aget_name((hid_t)attr_id, 0, NULL)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (NULL == (attrName = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Aget_name: failed to allocate attribute name buffer"); + if (NULL == (attrName = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Aget_name: failed to allocate attribute name buffer"); if (H5Aget_name((hid_t)attr_id, (size_t)buf_size + 1, attrName) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1505,15 +1524,19 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aget_1num_1attrs - (JNIEnv *env, jclass clss, jlong loc_id) +Java_hdf_hdf5lib_H5_H5Aget_1num_1attrs(JNIEnv *env, jclass clss, jlong loc_id) { int retVal = FAIL; UNUSED(clss); +#ifdef H5_NO_DEPRECATED_SYMBOLS + UNUSED(loc_id); + H5_UNIMPLEMENTED(ENVONLY, "H5Aget_num_attrs: not implemented"); +#else if ((retVal = H5Aget_num_attrs((hid_t)loc_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); +#endif done: return (jint)retVal; @@ -1525,11 +1548,10 @@ done: * Signature: (JLjava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Adelete - (JNIEnv *env, jclass clss, jlong loc_id, jstring name) +Java_hdf_hdf5lib_H5_H5Adelete(JNIEnv *env, jclass clss, jlong loc_id, jstring name) { const char *attrName = NULL; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -1554,8 +1576,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5__1H5Aclose - (JNIEnv *env, jclass clss, jlong attr_id) +Java_hdf_hdf5lib_H5__1H5Aclose(JNIEnv *env, jclass clss, jlong attr_id) { herr_t retVal = FAIL; @@ -1574,12 +1595,11 @@ done: * Signature: (JLjava/lang/String;JJJJ)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Acreate2 - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong type_id, - jlong space_id, jlong create_plist, jlong access_plist) +Java_hdf_hdf5lib_H5__1H5Acreate2(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong type_id, + jlong space_id, jlong create_plist, jlong access_plist) { const char *attrName = NULL; - hid_t status = H5I_INVALID_HID; + hid_t status = H5I_INVALID_HID; UNUSED(clss); @@ -1588,8 +1608,8 @@ Java_hdf_hdf5lib_H5__1H5Acreate2 PIN_JAVA_STRING(ENVONLY, name, attrName, NULL, "H5Acreate2: attribute name not pinned"); - if ((status = H5Acreate2((hid_t)loc_id, attrName, (hid_t)type_id, - (hid_t)space_id, (hid_t)create_plist, (hid_t)access_plist)) < 0) + if ((status = H5Acreate2((hid_t)loc_id, attrName, (hid_t)type_id, (hid_t)space_id, (hid_t)create_plist, + (hid_t)access_plist)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -1605,12 +1625,11 @@ done: * Signature: (JLjava/lang/String;J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Aopen - (JNIEnv *env, jclass clss, jlong obj_id, jstring name, jlong access_plist) +Java_hdf_hdf5lib_H5__1H5Aopen(JNIEnv *env, jclass clss, jlong obj_id, jstring name, jlong access_plist) { const char *attrName = NULL; - hid_t retVal = H5I_INVALID_HID; + hid_t retVal = H5I_INVALID_HID; UNUSED(clss); @@ -1635,11 +1654,11 @@ done: * Signature: (JLjava/lang/String;IIJJJ)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Aopen_1by_1idx - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint idx_type, jint order, jlong n, jlong aapl_id, jlong lapl_id) +Java_hdf_hdf5lib_H5__1H5Aopen_1by_1idx(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint idx_type, + jint order, jlong n, jlong aapl_id, jlong lapl_id) { const char *objName = NULL; - hid_t retVal = H5I_INVALID_HID; + hid_t retVal = H5I_INVALID_HID; UNUSED(clss); @@ -1648,8 +1667,8 @@ Java_hdf_hdf5lib_H5__1H5Aopen_1by_1idx PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Aopen_by_idx: object name not pinned"); - if ((retVal = H5Aopen_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type, - (H5_iter_order_t)order, (hsize_t)n, (hid_t)aapl_id, (hid_t)lapl_id)) < 0) + if ((retVal = H5Aopen_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type, (H5_iter_order_t)order, + (hsize_t)n, (hid_t)aapl_id, (hid_t)lapl_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -1660,17 +1679,18 @@ done: } /* end Java_hdf_hdf5lib_H5__1H5Aopen_1by_1idx */ /* -* Class: hdf_hdf5lib_H5 -* Method: _H5Acreate_by_name -* Signature: (JLjava/lang/String;Ljava/lang/String;JJJJJ)J -*/ + * Class: hdf_hdf5lib_H5 + * Method: _H5Acreate_by_name + * Signature: (JLjava/lang/String;Ljava/lang/String;JJJJJ)J + */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Acreate_1by_1name - (JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jstring attr_name, jlong type_id, jlong space_id, jlong acpl_id, jlong aapl_id, jlong lapl_id) +Java_hdf_hdf5lib_H5__1H5Acreate_1by_1name(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, + jstring attr_name, jlong type_id, jlong space_id, jlong acpl_id, + jlong aapl_id, jlong lapl_id) { - const char *objName = NULL; + const char *objName = NULL; const char *attrName = NULL; - hid_t retVal = H5I_INVALID_HID; + hid_t retVal = H5I_INVALID_HID; UNUSED(clss); @@ -1682,8 +1702,8 @@ Java_hdf_hdf5lib_H5__1H5Acreate_1by_1name PIN_JAVA_STRING(ENVONLY, obj_name, objName, NULL, "H5Acreate_by_name: object name not pinned"); PIN_JAVA_STRING(ENVONLY, attr_name, attrName, NULL, "H5Acreate_by_name: attribute name not pinned"); - if ((retVal = H5Acreate_by_name((hid_t)loc_id, objName, attrName, (hid_t)type_id, - (hid_t)space_id, (hid_t)acpl_id, (hid_t)aapl_id, (hid_t)lapl_id)) < 0) + if ((retVal = H5Acreate_by_name((hid_t)loc_id, objName, attrName, (hid_t)type_id, (hid_t)space_id, + (hid_t)acpl_id, (hid_t)aapl_id, (hid_t)lapl_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -1701,12 +1721,12 @@ done: * Signature: (JLjava/lang/String;Ljava/lang/String;J)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Aexists_1by_1name - (JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jstring attr_name, jlong lapl_id) +Java_hdf_hdf5lib_H5_H5Aexists_1by_1name(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, + jstring attr_name, jlong lapl_id) { - const char *objName = NULL; + const char *objName = NULL; const char *attrName = NULL; - htri_t bval = JNI_FALSE; + htri_t bval = JNI_FALSE; UNUSED(clss); @@ -1738,12 +1758,12 @@ done: * Signature: (JLjava/lang/String;Ljava/lang/String)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Arename - (JNIEnv *env, jclass clss, jlong loc_id, jstring old_attr_name, jstring new_attr_name) +Java_hdf_hdf5lib_H5_H5Arename(JNIEnv *env, jclass clss, jlong loc_id, jstring old_attr_name, + jstring new_attr_name) { const char *oldAttrName = NULL; const char *newAttrName = NULL; - herr_t retVal = FAIL; + herr_t retVal = FAIL; UNUSED(clss); @@ -1773,13 +1793,13 @@ done: * Signature: (JLjava/lang/String;Ljava/lang/String;Ljava/lang/String;J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Arename_1by_1name - (JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jstring old_attr_name, jstring new_attr_name, jlong lapl_id) +Java_hdf_hdf5lib_H5_H5Arename_1by_1name(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, + jstring old_attr_name, jstring new_attr_name, jlong lapl_id) { - const char *objName = NULL; + const char *objName = NULL; const char *oldAttrName = NULL; const char *newAttrName = NULL; - herr_t retVal = FAIL; + herr_t retVal = FAIL; UNUSED(clss); @@ -1791,8 +1811,10 @@ Java_hdf_hdf5lib_H5_H5Arename_1by_1name H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Arename_by_name: new attribute name is NULL"); PIN_JAVA_STRING(ENVONLY, obj_name, objName, NULL, "H5Arename_by_name: object name not pinned"); - PIN_JAVA_STRING(ENVONLY, old_attr_name, oldAttrName, NULL, "H5Arename_by_name: old attribute name not pinned"); - PIN_JAVA_STRING(ENVONLY, new_attr_name, newAttrName, NULL, "H5Arename_by_name: new attribute name not pinned"); + PIN_JAVA_STRING(ENVONLY, old_attr_name, oldAttrName, NULL, + "H5Arename_by_name: old attribute name not pinned"); + PIN_JAVA_STRING(ENVONLY, new_attr_name, newAttrName, NULL, + "H5Arename_by_name: new attribute name not pinned"); if ((retVal = H5Arename_by_name((hid_t)loc_id, objName, oldAttrName, newAttrName, (hid_t)lapl_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1814,13 +1836,13 @@ done: * Signature: (JLjava/lang/String;IIJJ)Ljava/lang/String; */ JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Aget_1name_1by_1idx - (JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jint idx_type, jint order, jlong n, jlong lapl_id) +Java_hdf_hdf5lib_H5_H5Aget_1name_1by_1idx(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, + jint idx_type, jint order, jlong n, jlong lapl_id) { - const char *objName = NULL; - jstring str = NULL; + const char *objName = NULL; + jstring str = NULL; ssize_t status_size = -1; - char *attrName = NULL; + char * attrName = NULL; UNUSED(clss); @@ -1830,15 +1852,16 @@ Java_hdf_hdf5lib_H5_H5Aget_1name_1by_1idx PIN_JAVA_STRING(ENVONLY, obj_name, objName, NULL, "H5Aget_name_by_idx: object name not pinned"); /* Get the length of the attribute name */ - if ((status_size = H5Aget_name_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type, - (H5_iter_order_t) order, (hsize_t) n, (char *)NULL, (size_t)0, (hid_t)lapl_id)) < 0) + if ((status_size = + H5Aget_name_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type, (H5_iter_order_t)order, + (hsize_t)n, (char *)NULL, (size_t)0, (hid_t)lapl_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (NULL == (attrName = (char *) HDmalloc(sizeof(char) * (size_t) status_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Aget_name_by_idx: failed to allocate buffer for attribute name"); + if (NULL == (attrName = (char *)HDmalloc(sizeof(char) * (size_t)status_size + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Aget_name_by_idx: failed to allocate buffer for attribute name"); - if ((H5Aget_name_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type, - (H5_iter_order_t) order, (hsize_t) n, (char *)attrName, (size_t)status_size + 1, (hid_t)lapl_id)) < 0) + if ((H5Aget_name_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t)n, + (char *)attrName, (size_t)status_size + 1, (hid_t)lapl_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); attrName[status_size] = '\0'; @@ -1860,8 +1883,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Aget_1storage_1size - (JNIEnv *env, jclass clss, jlong attr_id) +Java_hdf_hdf5lib_H5_H5Aget_1storage_1size(JNIEnv *env, jclass clss, jlong attr_id) { hsize_t retVal = 0; @@ -1880,8 +1902,7 @@ done: * Signature: (J)Lhdf/hdf5lib/structs/H5A_info_t; */ JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Aget_1info - (JNIEnv *env, jclass clss, jlong attr_id) +Java_hdf_hdf5lib_H5_H5Aget_1info(JNIEnv *env, jclass clss, jlong attr_id) { H5A_info_t ainfo; jobject ret_obj = NULL; @@ -1909,8 +1930,8 @@ done: * Signature: (JLjava/lang/String;IIJJ)Lhdf/hdf5lib/structs/H5A_info_t; */ JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Aget_1info_1by_1idx - (JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jint idx_type, jint order, jlong n, jlong lapl_id) +Java_hdf_hdf5lib_H5_H5Aget_1info_1by_1idx(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, + jint idx_type, jint order, jlong n, jlong lapl_id) { const char *objName = NULL; H5A_info_t ainfo; @@ -1925,8 +1946,8 @@ Java_hdf_hdf5lib_H5_H5Aget_1info_1by_1idx PIN_JAVA_STRING(ENVONLY, obj_name, objName, NULL, "H5Aget_info_by_idx: object name not pinned"); - if ((status = H5Aget_info_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type, - (H5_iter_order_t)order, (hsize_t)n, &ainfo, (hid_t)lapl_id)) < 0) + if ((status = H5Aget_info_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type, (H5_iter_order_t)order, + (hsize_t)n, &ainfo, (hid_t)lapl_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); args[0].z = ainfo.corder_valid; @@ -1949,10 +1970,10 @@ done: * Signature: (JLjava/lang/String;Ljava/lang/String;J)Lhdf/hdf5lib/structs/H5A_info_t; */ JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Aget_1info_1by_1name - (JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jstring attr_name, jlong lapl_id) +Java_hdf_hdf5lib_H5_H5Aget_1info_1by_1name(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, + jstring attr_name, jlong lapl_id) { - const char *objName = NULL; + const char *objName = NULL; const char *attrName = NULL; H5A_info_t ainfo; herr_t status; @@ -1994,12 +2015,12 @@ done: * Signature: (JLjava/lang/String;Ljava/lang/String;J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Adelete_1by_1name - (JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jstring attr_name, jlong lapl_id) +Java_hdf_hdf5lib_H5_H5Adelete_1by_1name(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, + jstring attr_name, jlong lapl_id) { - const char *objName = NULL; + const char *objName = NULL; const char *attrName = NULL; - herr_t retVal = FAIL; + herr_t retVal = FAIL; UNUSED(clss); @@ -2029,11 +2050,10 @@ done: * Signature: (JLjava/lang/String;)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Aexists - (JNIEnv *env, jclass clss, jlong obj_id, jstring attr_name) +Java_hdf_hdf5lib_H5_H5Aexists(JNIEnv *env, jclass clss, jlong obj_id, jstring attr_name) { const char *attrName = NULL; - htri_t bval = JNI_FALSE; + htri_t bval = JNI_FALSE; UNUSED(clss); @@ -2060,11 +2080,11 @@ done: * Signature: (JLjava/lang/String;IIJJ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Adelete_1by_1idx - (JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jint idx_type, jint order, jlong n, jlong lapl_id) +Java_hdf_hdf5lib_H5_H5Adelete_1by_1idx(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, + jint idx_type, jint order, jlong n, jlong lapl_id) { const char *objName = NULL; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -2073,7 +2093,8 @@ Java_hdf_hdf5lib_H5_H5Adelete_1by_1idx PIN_JAVA_STRING(ENVONLY, obj_name, objName, NULL, "H5Adelete_by_idx: object name not pinned"); - if ((status = H5Adelete_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t)n, (hid_t)lapl_id)) < 0) + if ((status = H5Adelete_by_idx((hid_t)loc_id, objName, (H5_index_t)idx_type, (H5_iter_order_t)order, + (hsize_t)n, (hid_t)lapl_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -2087,13 +2108,13 @@ done: * Signature: (JLjava/lang/String;Ljava/lang/String;JJ)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Aopen_1by_1name - (JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, jstring attr_name, jlong aapl_id, jlong lapl_id) +Java_hdf_hdf5lib_H5__1H5Aopen_1by_1name(JNIEnv *env, jclass clss, jlong loc_id, jstring obj_name, + jstring attr_name, jlong aapl_id, jlong lapl_id) { const char *attrName = NULL; - const char *objName = NULL; - hid_t status = H5I_INVALID_HID; + const char *objName = NULL; + hid_t status = H5I_INVALID_HID; UNUSED(clss); @@ -2123,8 +2144,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Aget_1create_1plist - (JNIEnv *env, jclass clss, jlong attr_id) +Java_hdf_hdf5lib_H5__1H5Aget_1create_1plist(JNIEnv *env, jclass clss, jlong attr_id) { hid_t retVal = H5I_INVALID_HID; @@ -2138,28 +2158,31 @@ done: } /* end Java_hdf_hdf5lib_H5__1H5Aget_1create_1plist */ static herr_t -H5A_iterate_cb - (hid_t g_id, const char *name, const H5A_info_t *info, void *cb_data) { +H5A_iterate_cb(hid_t g_id, const char *name, const H5A_info_t *info, void *cb_data) +{ cb_wrapper *wrapper = (cb_wrapper *)cb_data; - jmethodID constructor, mid; - jobject cb_info_t = NULL; + jmethodID mid; + jobject cb_info_t = NULL; jobject visit_callback = wrapper->visit_callback; jstring str; - JNIEnv *cbenv = NULL; - jclass cls; + JNIEnv * cbenv = NULL; + jclass cbcls; jvalue args[4]; - void *op_data = (void *)wrapper->op_data; - jint status = -1; + void * op_data = (void *)wrapper->op_data; + jint status = -1; if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) { CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE); H5_JNI_FATAL_ERROR(CBENVONLY, "H5A_iterate_cb: failed to attach current thread to JVM"); } - if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback))) + if (NULL == (cbcls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JLjava/lang/String;Lhdf/hdf5lib/structs/H5A_info_t;Lhdf/hdf5lib/callbacks/H5A_iterate_t;)I"))) + if (NULL == + (mid = CBENVPTR->GetMethodID( + CBENVONLY, cbcls, "callback", + "(JLjava/lang/String;Lhdf/hdf5lib/structs/H5A_info_t;Lhdf/hdf5lib/callbacks/H5A_iterate_t;)I"))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); if (NULL == (str = CBENVPTR->NewStringUTF(CBENVONLY, name))) @@ -2170,18 +2193,7 @@ H5A_iterate_cb args[2].i = info->cset; args[3].j = (jlong)info->data_size; - /* Get a reference to your class if you don't have it already */ - if (NULL == (cls = CBENVPTR->FindClass(CBENVONLY, "hdf/hdf5lib/structs/H5A_info_t"))) - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - - /* Get a reference to the constructor; the name is <init> */ - if (NULL == (constructor = CBENVPTR->GetMethodID(CBENVONLY, cls, "<init>", "(ZJIJ)V"))) - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - - if (NULL == (cb_info_t = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args))) { - HDprintf("FATAL ERROR: hdf/hdf5lib/structs/H5A_info_t: Creation failed\n"); - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - } + CALL_CONSTRUCTOR(CBENVONLY, "hdf/hdf5lib/structs/H5A_info_t", "(ZJIJ)V", args, cb_info_t); status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, g_id, str, cb_info_t, op_data); CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); @@ -2199,13 +2211,12 @@ done: * Signature: (JIIJLjava/lang/Object;Ljava/lang/Object;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aiterate - (JNIEnv *env, jclass clss, jlong grp_id, jint idx_type, jint order, - jlong idx, jobject callback_op, jobject op_data) +Java_hdf_hdf5lib_H5_H5Aiterate(JNIEnv *env, jclass clss, jlong grp_id, jint idx_type, jint order, jlong idx, + jobject callback_op, jobject op_data) { - cb_wrapper wrapper = { callback_op, op_data }; + cb_wrapper wrapper = {callback_op, op_data}; hsize_t start_idx = (hsize_t)idx; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -2217,7 +2228,8 @@ Java_hdf_hdf5lib_H5_H5Aiterate if (NULL == callback_op) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Aiterate: callback_op is NULL"); - if ((status = H5Aiterate2((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t*)&start_idx, (H5A_operator2_t)H5A_iterate_cb, (void*)&wrapper)) < 0) + if ((status = H5Aiterate2((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, + (hsize_t *)&start_idx, (H5A_operator2_t)H5A_iterate_cb, (void *)&wrapper)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -2230,14 +2242,14 @@ done: * Signature: (JLjava/lang/String;IIJLjava/lang/Object;Ljava/lang/Object;J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aiterate_1by_1name - (JNIEnv *env, jclass clss, jlong grp_id, jstring name, jint idx_type, jint order, - jlong idx, jobject callback_op, jobject op_data, jlong access_id) +Java_hdf_hdf5lib_H5_H5Aiterate_1by_1name(JNIEnv *env, jclass clss, jlong grp_id, jstring name, jint idx_type, + jint order, jlong idx, jobject callback_op, jobject op_data, + jlong access_id) { - const char *objName = NULL; - cb_wrapper wrapper = { callback_op, op_data }; + const char *objName = NULL; + cb_wrapper wrapper = {callback_op, op_data}; hsize_t start_idx = (hsize_t)idx; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -2253,7 +2265,9 @@ Java_hdf_hdf5lib_H5_H5Aiterate_1by_1name PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Aiterate_by_name: object name not pinned"); - if ((status = H5Aiterate_by_name((hid_t)grp_id, objName, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t*)&start_idx, (H5A_operator2_t)H5A_iterate_cb, (void*)&wrapper, (hid_t)access_id)) < 0) + if ((status = H5Aiterate_by_name((hid_t)grp_id, objName, (H5_index_t)idx_type, (H5_iter_order_t)order, + (hsize_t *)&start_idx, (H5A_operator2_t)H5A_iterate_cb, (void *)&wrapper, + (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: diff --git a/java/src/jni/h5aImp.h b/java/src/jni/h5aImp.h index 15cc83e..aee0e40 100644 --- a/java/src/jni/h5aImp.h +++ b/java/src/jni/h5aImp.h @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -14,440 +13,366 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5A */ -#ifndef _Included_hdf_hdf5lib_H5_H5A -#define _Included_hdf_hdf5lib_H5_H5A +#ifndef Included_hdf_hdf5lib_H5_H5A +#define Included_hdf_hdf5lib_H5_H5A #ifdef __cplusplus extern "C" { #endif /* __cplusplus */ - /* * Class: hdf_hdf5lib_H5 * Method: H5Acreate * Signature: (JLjava/lang/String;JJJ)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Acreate - (JNIEnv *, jclass, jlong, jstring, jlong, jlong, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Acreate(JNIEnv *, jclass, jlong, jstring, jlong, jlong, + jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Aopen_name * Signature: (JLjava/lang/String;)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Aopen_1name - (JNIEnv *, jclass, jlong, jstring); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Aopen_1name(JNIEnv *, jclass, jlong, jstring); /* * Class: hdf_hdf5lib_H5 * Method: H5Aopen_idx * Signature: (JI)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Aopen_1idx - (JNIEnv *, jclass, jlong, jint); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Aopen_1idx(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Aread * Signature: (JJ[B)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aread - (JNIEnv *, jclass, jlong, jlong, jbyteArray, jboolean); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Aread(JNIEnv *, jclass, jlong, jlong, jbyteArray, jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Awrite * Signature: (JJ[B)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Awrite - (JNIEnv *, jclass, jlong, jlong, jbyteArray, jboolean); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Awrite(JNIEnv *, jclass, jlong, jlong, jbyteArray, jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Aread_short * Signature: (JJ[SZ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aread_1short - (JNIEnv*, jclass, jlong, jlong, jshortArray, jboolean); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Aread_1short(JNIEnv *, jclass, jlong, jlong, jshortArray, + jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Awrite_short * Signature: (JJ[SZ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Awrite_1short - (JNIEnv*, jclass, jlong, jlong, jshortArray, jboolean); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Awrite_1short(JNIEnv *, jclass, jlong, jlong, jshortArray, + jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Aread_int * Signature: (JJ[IZ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aread_1int - (JNIEnv*, jclass, jlong, jlong, jintArray, jboolean); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Aread_1int(JNIEnv *, jclass, jlong, jlong, jintArray, jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Awrite_int * Signature: (JJ[IZ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Awrite_1int - (JNIEnv*, jclass, jlong, jlong, jintArray, jboolean); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Awrite_1int(JNIEnv *, jclass, jlong, jlong, jintArray, jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Aread_long * Signature: (JJ[JZ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aread_1long - (JNIEnv*, jclass, jlong, jlong, jlongArray, jboolean); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Aread_1long(JNIEnv *, jclass, jlong, jlong, jlongArray, + jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Awrite_long * Signature: (JJ[JZ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Awrite_1long - (JNIEnv*, jclass, jlong, jlong, jlongArray, jboolean); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Awrite_1long(JNIEnv *, jclass, jlong, jlong, jlongArray, + jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Aread_float * Signature: (JJ[FZ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aread_1float - (JNIEnv*, jclass, jlong, jlong, jfloatArray, jboolean); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Aread_1float(JNIEnv *, jclass, jlong, jlong, jfloatArray, + jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Awrite_float * Signature: (JJ[FZ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Awrite_1float - (JNIEnv*, jclass, jlong, jlong, jfloatArray, jboolean); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Awrite_1float(JNIEnv *, jclass, jlong, jlong, jfloatArray, + jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Aread_double * Signature: (JJ[DZ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aread_1double - (JNIEnv*, jclass, jlong, jlong, jdoubleArray, jboolean); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Aread_1double(JNIEnv *, jclass, jlong, jlong, jdoubleArray, + jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Awrite_double * Signature: (JJ[DZ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Awrite_1double - (JNIEnv*, jclass, jlong, jlong, jdoubleArray, jboolean); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Awrite_1double(JNIEnv *, jclass, jlong, jlong, jdoubleArray, + jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5AreadVL * Signature: (JJ[Ljava/lang/String;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5AreadVL - (JNIEnv *, jclass, jlong, jlong, jobjectArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5AreadVL(JNIEnv *, jclass, jlong, jlong, jobjectArray); /* * Class: hdf_hdf5lib_H5 * Method: H5AwriteVL * Signature: (JJ[Ljava/lang/String;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5AwriteVL - (JNIEnv *, jclass, jlong, jlong, jobjectArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5AwriteVL(JNIEnv *, jclass, jlong, jlong, jobjectArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Aread_string * Signature: (JJ[Ljava/lang/String;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aread_1string - (JNIEnv*, jclass, jlong, jlong, jobjectArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Aread_1string(JNIEnv *, jclass, jlong, jlong, jobjectArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Awrite_string * Signature: (JJ[Ljava/lang/String;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Awrite_1string -(JNIEnv*, jclass, jlong, jlong, jobjectArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Awrite_1string(JNIEnv *, jclass, jlong, jlong, jobjectArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Aread_VLStrings * Signature: (JJ[Ljava/lang/String;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aread_1VLStrings -(JNIEnv*, jclass, jlong, jlong, jobjectArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Aread_1VLStrings(JNIEnv *, jclass, jlong, jlong, jobjectArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Awrite_VLStrings * Signature: (JJ[B)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Awrite_1VLStrings - (JNIEnv*, jclass, jlong, jlong, jobjectArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Awrite_1VLStrings(JNIEnv *, jclass, jlong, jlong, jobjectArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Aread_reg_ref * Signature: (JJ[Ljava/lang/String;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aread_1reg_1ref -(JNIEnv*, jclass, jlong, jlong, jobjectArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Aread_1reg_1ref(JNIEnv *, jclass, jlong, jlong, jobjectArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Aget_space * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Aget_1space - (JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Aget_1space(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Aget_type * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Aget_1type - (JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Aget_1type(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Aget_name * Signature: (J)Ljava/lang/String; */ -JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Aget_1name - (JNIEnv *, jclass, jlong); +JNIEXPORT jstring JNICALL Java_hdf_hdf5lib_H5_H5Aget_1name(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Aget_num_attrs * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aget_1num_1attrs - (JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Aget_1num_1attrs(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Adelete * Signature: (JLjava/lang/String;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Adelete - (JNIEnv *, jclass, jlong, jstring); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Adelete(JNIEnv *, jclass, jlong, jstring); /* * Class: hdf_hdf5lib_H5 * Method: H5Aclose * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5__1H5Aclose - (JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5__1H5Aclose(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: _H5Acreate2 * Signature: (JLjava/lang/String;JJJJ)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Acreate2 -(JNIEnv *, jclass, jlong, jstring, jlong, jlong, jlong, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Acreate2(JNIEnv *, jclass, jlong, jstring, jlong, jlong, + jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: _H5Aopen * Signature: (JLjava/lang/String;J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Aopen - (JNIEnv *, jclass, jlong, jstring, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Aopen(JNIEnv *, jclass, jlong, jstring, jlong); /* * Class: hdf_hdf5lib_H5 * Method: _H5Aopen_by_idx * Signature: (JLjava/lang/String;IIJJJ)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Aopen_1by_1idx - (JNIEnv *, jclass, jlong, jstring, jint, jint, jlong, jlong, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Aopen_1by_1idx(JNIEnv *, jclass, jlong, jstring, jint, jint, + jlong, jlong, jlong); /* -* Class: hdf_hdf5lib_H5 -* Method: _H5Acreate_by_name -* Signature: (JLjava/lang/String;Ljava/lang/String;JJJJJ)J -*/ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Acreate_1by_1name -(JNIEnv *, jclass, jlong, jstring, jstring, jlong, jlong, jlong, jlong, jlong); + * Class: hdf_hdf5lib_H5 + * Method: _H5Acreate_by_name + * Signature: (JLjava/lang/String;Ljava/lang/String;JJJJJ)J + */ +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Acreate_1by_1name(JNIEnv *, jclass, jlong, jstring, jstring, + jlong, jlong, jlong, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Aexists_by_name * Signature: (JLjava/lang/String;Ljava/lang/String;J)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Aexists_1by_1name - (JNIEnv *, jclass, jlong, jstring, jstring, jlong); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Aexists_1by_1name(JNIEnv *, jclass, jlong, jstring, jstring, + jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Arename * Signature: (JLjava/lang/String;Ljava/lang/String)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Arename - (JNIEnv *, jclass, jlong, jstring, jstring); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Arename(JNIEnv *, jclass, jlong, jstring, jstring); /* * Class: hdf_hdf5lib_H5 * Method: H5Arename_by_name * Signature: (JLjava/lang/String;Ljava/lang/String;Ljava/lang/String;J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Arename_1by_1name - (JNIEnv *, jclass, jlong, jstring, jstring, jstring, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Arename_1by_1name(JNIEnv *, jclass, jlong, jstring, jstring, + jstring, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Aget_name_by_idx * Signature: (JLjava/lang/String;IIJJ)Ljava/lang/String; */ -JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Aget_1name_1by_1idx - (JNIEnv *, jclass, jlong, jstring, jint, jint, jlong, jlong); +JNIEXPORT jstring JNICALL Java_hdf_hdf5lib_H5_H5Aget_1name_1by_1idx(JNIEnv *, jclass, jlong, jstring, jint, + jint, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Aget_storage_size * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Aget_1storage_1size - (JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Aget_1storage_1size(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Aget_info * Signature: (J)Lhdf/hdf5lib/structs/H5A_info_t; */ -JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Aget_1info - (JNIEnv *, jclass, jlong); +JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Aget_1info(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Aget_info_by_idx * Signature: (JLjava/lang/String;IIJJ)Lhdf/hdf5lib/structs/H5A_info_t; */ -JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Aget_1info_1by_1idx - (JNIEnv *, jclass, jlong, jstring, jint, jint, jlong, jlong); +JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Aget_1info_1by_1idx(JNIEnv *, jclass, jlong, jstring, jint, + jint, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Aget_info_by_name * Signature: (JLjava/lang/String;Ljava/lang/String;J)Lhdf/hdf5lib/structs/H5A_info_t; */ -JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Aget_1info_1by_1name - (JNIEnv *, jclass, jlong, jstring, jstring, jlong); +JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Aget_1info_1by_1name(JNIEnv *, jclass, jlong, jstring, + jstring, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Adelete_by_name * Signature: (JLjava/lang/String;Ljava/lang/String;J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Adelete_1by_1name - (JNIEnv *, jclass, jlong, jstring, jstring, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Adelete_1by_1name(JNIEnv *, jclass, jlong, jstring, jstring, + jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Aexists * Signature: (JLjava/lang/String;)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Aexists - (JNIEnv *, jclass, jlong, jstring); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Aexists(JNIEnv *, jclass, jlong, jstring); /* * Class: hdf_hdf5lib_H5 * Method: H5Adelete_by_idx * Signature: (JLjava/lang/String;IIJJ)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Adelete_1by_1idx - (JNIEnv *, jclass, jlong, jstring, jint, jint, jlong, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Adelete_1by_1idx(JNIEnv *, jclass, jlong, jstring, jint, jint, + jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: _H5Aopen_by_name * Signature: (JLjava/lang/String;Ljava/lang/String;JJ)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Aopen_1by_1name - (JNIEnv *, jclass, jlong, jstring, jstring, jlong, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Aopen_1by_1name(JNIEnv *, jclass, jlong, jstring, jstring, + jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Aget_create_plist * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Aget_1create_1plist - (JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Aget_1create_1plist(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Aiterate * Signature: (JIIJLjava/lang/Object;Ljava/lang/Object;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aiterate - (JNIEnv*, jclass, jlong, jint, jint, jlong, jobject, jobject); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Aiterate(JNIEnv *, jclass, jlong, jint, jint, jlong, jobject, + jobject); /* * Class: hdf_hdf5lib_H5 * Method: H5Aiterate_by_name * Signature: (JLjava/lang/String;IIJLjava/lang/Object;Ljava/lang/Object;J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Aiterate_1by_1name - (JNIEnv*, jclass, jlong, jstring, jint, jint, jlong, jobject, jobject, jlong); - +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Aiterate_1by_1name(JNIEnv *, jclass, jlong, jstring, jint, jint, + jlong, jobject, jobject, jlong); #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5A */ +#endif /* Included_hdf_hdf5lib_H5_H5A */ diff --git a/java/src/jni/h5dImp.c b/java/src/jni/h5dImp.c index 5500847..73b252a 100644 --- a/java/src/jni/h5dImp.c +++ b/java/src/jni/h5dImp.c @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -44,28 +44,30 @@ typedef struct _cb_wrapper { /* Local Prototypes */ /********************/ -static herr_t H5DreadVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf); -static herr_t H5DreadVL_str(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf); -static herr_t H5DwriteVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf); -static herr_t H5DwriteVL_str(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf); +static herr_t H5DreadVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, + hid_t xfer_plist_id, jobjectArray buf); +static herr_t H5DreadVL_str(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, + hid_t xfer_plist_id, jobjectArray buf); +static herr_t H5DwriteVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, + hid_t xfer_plist_id, jobjectArray buf); +static herr_t H5DwriteVL_str(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, + hid_t xfer_plist_id, jobjectArray buf); /********************/ /* Local Macros */ /********************/ - /* * Class: hdf_hdf5lib_H5 * Method: _H5Dcreate * Signature: (JLjava/lang/String;JJJ)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Dcreate - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong type_id, - jlong space_id, jlong create_plist_id) +Java_hdf_hdf5lib_H5__1H5Dcreate(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong type_id, + jlong space_id, jlong create_plist_id) { const char *dsetName = NULL; - hid_t dset_id = H5I_INVALID_HID; + hid_t dset_id = H5I_INVALID_HID; UNUSED(clss); @@ -74,7 +76,8 @@ Java_hdf_hdf5lib_H5__1H5Dcreate PIN_JAVA_STRING(ENVONLY, name, dsetName, NULL, "H5Dcreate: dataset name not pinned"); - if ((dset_id = H5Dcreate2((hid_t)loc_id, dsetName, (hid_t)type_id, (hid_t)space_id, H5P_DEFAULT, (hid_t)create_plist_id, H5P_DEFAULT)) < 0) + if ((dset_id = H5Dcreate2((hid_t)loc_id, dsetName, (hid_t)type_id, (hid_t)space_id, H5P_DEFAULT, + (hid_t)create_plist_id, H5P_DEFAULT)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -90,11 +93,10 @@ done: * Signature: (JLjava/lang/String;)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Dopen - (JNIEnv *env, jclass clss, jlong loc_id, jstring name) +Java_hdf_hdf5lib_H5__1H5Dopen(JNIEnv *env, jclass clss, jlong loc_id, jstring name) { const char *dsetName = NULL; - hid_t dset_id = H5I_INVALID_HID; + hid_t dset_id = H5I_INVALID_HID; UNUSED(clss); @@ -119,8 +121,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Dget_1space - (JNIEnv *env, jclass clss, jlong dataset_id) +Java_hdf_hdf5lib_H5__1H5Dget_1space(JNIEnv *env, jclass clss, jlong dataset_id) { hid_t retVal = H5I_INVALID_HID; @@ -139,8 +140,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Dget_1type - (JNIEnv *env, jclass clss, jlong dataset_id) +Java_hdf_hdf5lib_H5__1H5Dget_1type(JNIEnv *env, jclass clss, jlong dataset_id) { hid_t retVal = H5I_INVALID_HID; @@ -159,8 +159,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Dget_1create_1plist - (JNIEnv *env, jclass clss, jlong dataset_id) +Java_hdf_hdf5lib_H5__1H5Dget_1create_1plist(JNIEnv *env, jclass clss, jlong dataset_id) { hid_t retVal = H5I_INVALID_HID; @@ -179,14 +178,14 @@ done: * Signature: (JJJJJ[BZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dread - (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id, - jlong file_space_id, jlong xfer_plist_id, jbyteArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Dread(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id, + jlong file_space_id, jlong xfer_plist_id, jbyteArray buf, + jboolean isCriticalPinning) { - jboolean readBufIsCopy; - htri_t data_class; - jbyte *readBuf = NULL; - herr_t status = FAIL; + jboolean readBufIsCopy; + htri_t data_class; + jbyte * readBuf = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -207,14 +206,15 @@ Java_hdf_hdf5lib_H5_H5Dread H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread: variable length type not supported"); if (isCriticalPinning) { - PIN_BYTE_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread: read buffer not critically pinned"); + PIN_BYTE_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, + "H5Dread: read buffer not critically pinned"); } else { PIN_BYTE_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread: read buffer not pinned"); } - if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, - (hid_t)file_space_id, (hid_t)xfer_plist_id, readBuf)) < 0) + if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id, + (hid_t)xfer_plist_id, readBuf)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -236,14 +236,14 @@ done: * Signature: (JJJJJ[BZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dwrite - (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id, - jlong file_space_id, jlong xfer_plist_id, jbyteArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Dwrite(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, + jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, jbyteArray buf, + jboolean isCriticalPinning) { - jboolean writeBufIsCopy; - htri_t data_class; - jbyte *writeBuf = NULL; - herr_t status = FAIL; + jboolean writeBufIsCopy; + htri_t data_class; + jbyte * writeBuf = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -264,14 +264,15 @@ Java_hdf_hdf5lib_H5_H5Dwrite H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite: variable length type not supported"); if (isCriticalPinning) { - PIN_BYTE_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite: write buffer not critically pinned"); + PIN_BYTE_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, + "H5Dwrite: write buffer not critically pinned"); } else { PIN_BYTE_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite: write buffer not pinned"); } - if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, - (hid_t)file_space_id, (hid_t)xfer_plist_id, writeBuf)) < 0) + if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id, + (hid_t)xfer_plist_id, writeBuf)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -293,8 +294,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5__1H5Dclose - (JNIEnv *env, jclass clss, jlong dataset_id) +Java_hdf_hdf5lib_H5__1H5Dclose(JNIEnv *env, jclass clss, jlong dataset_id) { herr_t retVal = FAIL; @@ -313,8 +313,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Dget_1storage_1size - (JNIEnv *env, jclass clss, jlong dataset_id) +Java_hdf_hdf5lib_H5_H5Dget_1storage_1size(JNIEnv *env, jclass clss, jlong dataset_id) { hsize_t retVal = 0; @@ -336,16 +335,24 @@ done: * Signature: (JJJ[B)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dvlen_1reclaim - (JNIEnv *env, jclass clss, jlong type_id, jlong space_id, - jlong xfer_plist_id, jbyteArray buf) +Java_hdf_hdf5lib_H5_H5Dvlen_1reclaim(JNIEnv *env, jclass clss, jlong type_id, jlong space_id, + jlong xfer_plist_id, jbyteArray buf) { - jboolean vlenBufIsCopy; - jbyte *vlenBuf = NULL; - herr_t status = FAIL; +#ifndef H5_NO_DEPRECATED_SYMBOLS + jboolean vlenBufIsCopy; + jbyte * vlenBuf = NULL; +#endif + herr_t status = FAIL; UNUSED(clss); +#ifdef H5_NO_DEPRECATED_SYMBOLS + UNUSED(type_id); + UNUSED(space_id); + UNUSED(xfer_plist_id); + UNUSED(buf); + H5_UNIMPLEMENTED(ENVONLY, "H5Dvlen_reclaim: not implemented"); +#else if (NULL == buf) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Dvlen_reclaim: buffer is NULL"); @@ -353,10 +360,13 @@ Java_hdf_hdf5lib_H5_H5Dvlen_1reclaim if ((status = H5Dvlen_reclaim((hid_t)type_id, (hid_t)space_id, (hid_t)xfer_plist_id, vlenBuf)) < 0) H5_LIBRARY_ERROR(ENVONLY); +#endif done: +#ifndef H5_NO_DEPRECATED_SYMBOLS if (vlenBuf) UNPIN_BYTE_ARRAY(ENVONLY, buf, vlenBuf, (status < 0) ? JNI_ABORT : 0); +#endif return (jint)status; } /* end Java_hdf_hdf5lib_H5_H5Dvlen_1reclaim */ @@ -367,14 +377,14 @@ done: * Signature: (JJJJJ[SZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dread_1short - (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id, - jlong file_space_id, jlong xfer_plist_id, jshortArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Dread_1short(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, + jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, + jshortArray buf, jboolean isCriticalPinning) { - jboolean readBufIsCopy; - jshort *readBuf = NULL; - htri_t data_class; - herr_t status = FAIL; + jboolean readBufIsCopy; + jshort * readBuf = NULL; + htri_t data_class; + herr_t status = FAIL; UNUSED(clss); @@ -395,14 +405,15 @@ Java_hdf_hdf5lib_H5_H5Dread_1short H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_short: variable length type not supported"); if (isCriticalPinning) { - PIN_SHORT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_short: read buffer not critically pinned"); + PIN_SHORT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, + "H5Dread_short: read buffer not critically pinned"); } else { PIN_SHORT_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_short: read buffer not pinned"); } - if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, - (hid_t)file_space_id, (hid_t)xfer_plist_id, readBuf)) < 0) + if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id, + (hid_t)xfer_plist_id, readBuf)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -424,14 +435,14 @@ done: * Signature: (JJJJJ[SZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dwrite_1short - (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id, - jlong file_space_id, jlong xfer_plist_id, jshortArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Dwrite_1short(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, + jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, + jshortArray buf, jboolean isCriticalPinning) { - jboolean writeBufIsCopy; - jshort *writeBuf = NULL; - htri_t data_class; - herr_t status = FAIL; + jboolean writeBufIsCopy; + jshort * writeBuf = NULL; + htri_t data_class; + herr_t status = FAIL; UNUSED(clss); @@ -452,14 +463,15 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1short H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_short: variable length type not supported"); if (isCriticalPinning) { - PIN_SHORT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_short: write buffer not critically pinned"); + PIN_SHORT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, + "H5Dwrite_short: write buffer not critically pinned"); } else { PIN_SHORT_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_short: write buffer not pinned"); } - if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, - (hid_t)file_space_id, (hid_t)xfer_plist_id, writeBuf)) < 0) + if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id, + (hid_t)xfer_plist_id, writeBuf)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -481,14 +493,14 @@ done: * Signature: (JJJJJ[IZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dread_1int - (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id, - jlong file_space_id, jlong xfer_plist_id, jintArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Dread_1int(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, + jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, jintArray buf, + jboolean isCriticalPinning) { - jboolean readBufIsCopy; - htri_t data_class; - jint *readBuf = NULL; - herr_t status = FAIL; + jboolean readBufIsCopy; + htri_t data_class; + jint * readBuf = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -509,14 +521,15 @@ Java_hdf_hdf5lib_H5_H5Dread_1int H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_int: variable length type not supported"); if (isCriticalPinning) { - PIN_INT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_int: read buffer not critically pinned"); + PIN_INT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, + "H5Dread_int: read buffer not critically pinned"); } else { PIN_INT_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_int: read buffer not pinned"); } - if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, - (hid_t)file_space_id, (hid_t)xfer_plist_id, readBuf)) < 0) + if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id, + (hid_t)xfer_plist_id, readBuf)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -538,14 +551,14 @@ done: * Signature: (JJJJJ[IZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dwrite_1int - (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id, - jlong file_space_id, jlong xfer_plist_id, jintArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Dwrite_1int(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, + jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, jintArray buf, + jboolean isCriticalPinning) { - jboolean writeBufIsCopy; - htri_t data_class; - jint *writeBuf = NULL; - herr_t status = FAIL; + jboolean writeBufIsCopy; + htri_t data_class; + jint * writeBuf = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -566,14 +579,15 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1int H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_int: variable length type not supported"); if (isCriticalPinning) { - PIN_INT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_int: write buffer not critically pinned"); + PIN_INT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, + "H5Dwrite_int: write buffer not critically pinned"); } else { PIN_INT_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_int: write buffer not pinned"); } - if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, - (hid_t)file_space_id, (hid_t)xfer_plist_id, writeBuf)) < 0) + if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id, + (hid_t)xfer_plist_id, writeBuf)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -595,14 +609,14 @@ done: * Signature: (JJJJJ[JZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dread_1long - (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id, - jlong file_space_id, jlong xfer_plist_id, jlongArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Dread_1long(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, + jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, + jlongArray buf, jboolean isCriticalPinning) { - jboolean readBufIsCopy; - htri_t data_class; - jlong *readBuf = NULL; - herr_t status = FAIL; + jboolean readBufIsCopy; + htri_t data_class; + jlong * readBuf = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -623,14 +637,15 @@ Java_hdf_hdf5lib_H5_H5Dread_1long H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_long: variable length type not supported"); if (isCriticalPinning) { - PIN_LONG_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_long: read buffer not critically pinned"); + PIN_LONG_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, + "H5Dread_long: read buffer not critically pinned"); } else { PIN_LONG_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_long: read buffer not pinned"); } - if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, - (hid_t)file_space_id, (hid_t)xfer_plist_id, readBuf)) < 0) + if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id, + (hid_t)xfer_plist_id, readBuf)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -652,14 +667,14 @@ done: * Signature: (JJJJJ[JZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dwrite_1long - (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id, - jlong file_space_id, jlong xfer_plist_id, jlongArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Dwrite_1long(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, + jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, + jlongArray buf, jboolean isCriticalPinning) { - jboolean writeBufIsCopy; - htri_t data_class; - jlong *writeBuf = NULL; - herr_t status = FAIL; + jboolean writeBufIsCopy; + htri_t data_class; + jlong * writeBuf = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -680,14 +695,15 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1long H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_long: variable length type not supported"); if (isCriticalPinning) { - PIN_LONG_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_long: write buffer not critically pinned"); + PIN_LONG_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, + "H5Dwrite_long: write buffer not critically pinned"); } else { PIN_LONG_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_long: write buffer not pinned"); } - if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, - (hid_t)file_space_id, (hid_t)xfer_plist_id, writeBuf)) < 0) + if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id, + (hid_t)xfer_plist_id, writeBuf)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -709,14 +725,14 @@ done: * Signature: (JJJJJ[FZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dread_1float - (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id, - jlong file_space_id, jlong xfer_plist_id, jfloatArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Dread_1float(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, + jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, + jfloatArray buf, jboolean isCriticalPinning) { - jboolean readBufIsCopy; - htri_t data_class; - jfloat *readBuf = NULL; - herr_t status = FAIL; + jboolean readBufIsCopy; + htri_t data_class; + jfloat * readBuf = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -737,14 +753,15 @@ Java_hdf_hdf5lib_H5_H5Dread_1float H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_float: variable length type not supported"); if (isCriticalPinning) { - PIN_FLOAT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_float: read buffer not critically pinned"); + PIN_FLOAT_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, + "H5Dread_float: read buffer not critically pinned"); } else { PIN_FLOAT_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_float: read buffer not pinned"); } - if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, - (hid_t)file_space_id, (hid_t)xfer_plist_id, readBuf)) < 0) + if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id, + (hid_t)xfer_plist_id, readBuf)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -766,14 +783,14 @@ done: * Signature: (JJJJJ[FZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dwrite_1float - (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id, - jlong file_space_id, jlong xfer_plist_id, jfloatArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Dwrite_1float(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, + jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, + jfloatArray buf, jboolean isCriticalPinning) { - jboolean writeBufIsCopy; - htri_t data_class; - jfloat *writeBuf = NULL; - herr_t status = FAIL; + jboolean writeBufIsCopy; + htri_t data_class; + jfloat * writeBuf = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -794,14 +811,15 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1float H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_float: variable length type not supported"); if (isCriticalPinning) { - PIN_FLOAT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_float: write buffer not critically pinned"); + PIN_FLOAT_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, + "H5Dwrite_float: write buffer not critically pinned"); } else { PIN_FLOAT_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_float: write buffer not pinned"); } - if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, - (hid_t)file_space_id, (hid_t)xfer_plist_id, writeBuf)) < 0) + if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id, + (hid_t)xfer_plist_id, writeBuf)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -823,14 +841,14 @@ done: * Signature: (JJJJJ[DZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dread_1double - (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id, - jlong file_space_id, jlong xfer_plist_id, jdoubleArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Dread_1double(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, + jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, + jdoubleArray buf, jboolean isCriticalPinning) { - jboolean readBufIsCopy; - jdouble *readBuf = NULL; - htri_t data_class; - herr_t status = FAIL; + jboolean readBufIsCopy; + jdouble *readBuf = NULL; + htri_t data_class; + herr_t status = FAIL; UNUSED(clss); @@ -851,14 +869,15 @@ Java_hdf_hdf5lib_H5_H5Dread_1double H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_double: variable length type not supported"); if (isCriticalPinning) { - PIN_DOUBLE_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_double: read buffer not critically pinned"); + PIN_DOUBLE_ARRAY_CRITICAL(ENVONLY, buf, readBuf, &readBufIsCopy, + "H5Dread_double: read buffer not critically pinned"); } else { PIN_DOUBLE_ARRAY(ENVONLY, buf, readBuf, &readBufIsCopy, "H5Dread_double: read buffer not pinned"); } - if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, - (hid_t)file_space_id, (hid_t)xfer_plist_id, readBuf)) < 0) + if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id, + (hid_t)xfer_plist_id, readBuf)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -880,14 +899,14 @@ done: * Signature: (JJJJJ[DZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dwrite_1double - (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id, - jlong file_space_id, jlong xfer_plist_id, jdoubleArray buf, jboolean isCriticalPinning) +Java_hdf_hdf5lib_H5_H5Dwrite_1double(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, + jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, + jdoubleArray buf, jboolean isCriticalPinning) { - jboolean writeBufIsCopy; - jdouble *writeBuf = NULL; - htri_t data_class; - herr_t status = FAIL; + jboolean writeBufIsCopy; + jdouble *writeBuf = NULL; + htri_t data_class; + herr_t status = FAIL; UNUSED(clss); @@ -908,14 +927,15 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1double H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dwrite_double: variable length type not supported"); if (isCriticalPinning) { - PIN_DOUBLE_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_double: write buffer not critically pinned"); + PIN_DOUBLE_ARRAY_CRITICAL(ENVONLY, buf, writeBuf, &writeBufIsCopy, + "H5Dwrite_double: write buffer not critically pinned"); } else { PIN_DOUBLE_ARRAY(ENVONLY, buf, writeBuf, &writeBufIsCopy, "H5Dwrite_double: write buffer not pinned"); } - if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, - (hid_t)file_space_id, (hid_t)xfer_plist_id, writeBuf)) < 0) + if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id, + (hid_t)xfer_plist_id, writeBuf)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -937,17 +957,17 @@ done: * Signature: (JJJJJ[Ljava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dread_1string - (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id, - jlong file_space_id, jlong xfer_plist_id, jobjectArray j_buf) +Java_hdf_hdf5lib_H5_H5Dread_1string(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, + jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, + jobjectArray j_buf) { - jstring jstr; - size_t str_len; - size_t pos; - jsize i, n; - char *c_buf = NULL; - char *cstr = NULL; - herr_t status = FAIL; + jstring jstr; + size_t str_len; + size_t pos; + jsize i, n; + char * c_buf = NULL; + char * cstr = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -962,23 +982,24 @@ Java_hdf_hdf5lib_H5_H5Dread_1string if (!(str_len = H5Tget_size((hid_t)mem_type_id))) H5_LIBRARY_ERROR(ENVONLY); - if (NULL == (cstr = (char *) HDmalloc(str_len + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Dread_string: memory allocation failed"); + if (NULL == (cstr = (char *)HDmalloc(str_len + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dread_string: memory allocation failed"); - if (NULL == (c_buf = (char *) HDmalloc((size_t)n * str_len))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Dread_string: memory allocation failed"); + if (NULL == (c_buf = (char *)HDmalloc((size_t)n * str_len))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dread_string: memory allocation failed"); - if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, - (hid_t)file_space_id, (hid_t)xfer_plist_id, c_buf)) < 0) + if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id, + (hid_t)xfer_plist_id, c_buf)) < 0) H5_LIBRARY_ERROR(ENVONLY); for (i = 0, pos = 0; i < n; i++) { - HDmemcpy(cstr, c_buf+pos, str_len); + HDmemcpy(cstr, c_buf + pos, str_len); cstr[str_len] = '\0'; if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, cstr))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Dread_string: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, "H5Dread_string: out of memory - unable to construct string from UTF characters"); } ENVPTR->SetObjectArrayElement(ENVONLY, j_buf, i, jstr); @@ -1004,15 +1025,15 @@ done: * Signature: (JJJJJ[Ljava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dwrite_1string - (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id, - jlong file_space_id, jlong xfer_plist_id, jobjectArray j_buf) +Java_hdf_hdf5lib_H5_H5Dwrite_1string(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, + jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, + jobjectArray j_buf) { const char *utf8 = NULL; jstring obj; size_t i, str_len; jsize n; - char *c_buf = NULL; + char * c_buf = NULL; herr_t status = FAIL; UNUSED(clss); @@ -1028,11 +1049,11 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1string if (!(str_len = H5Tget_size((hid_t)mem_type_id))) H5_LIBRARY_ERROR(ENVONLY); - if (NULL == (c_buf = (char *) HDmalloc((size_t)n * str_len))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Dwrite_string: memory allocation failed"); + if (NULL == (c_buf = (char *)HDmalloc((size_t)n * str_len))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dwrite_string: memory allocation failed"); - for (i = 0; i < (size_t) n; i++) { - if (NULL == (obj = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)j_buf, (jsize) i))) { + for (i = 0; i < (size_t)n; i++) { + if (NULL == (obj = (jstring)ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)j_buf, (jsize)i))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); /* @@ -1057,8 +1078,8 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1string ENVPTR->DeleteLocalRef(ENVONLY, obj); } /* end for */ - if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, - (hid_t)file_space_id, (hid_t)xfer_plist_id, c_buf)) < 0) + if ((status = H5Dwrite((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id, + (hid_t)xfer_plist_id, c_buf)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -1076,17 +1097,16 @@ done: * Signature: (JJJJJ[Ljava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5DreadVL - (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id, - jlong file_space_id, jlong xfer_plist_id, jobjectArray buf) +Java_hdf_hdf5lib_H5_H5DreadVL(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, + jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, jobjectArray buf) { H5T_class_t type_class; - htri_t isStr = 0; - htri_t isVlenStr = 0; - htri_t isComplex = 0; + htri_t isStr = 0; + htri_t isVlenStr = 0; + htri_t isComplex = 0; htri_t isComplex2 = 0; hid_t nested_tid = H5I_INVALID_HID; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -1106,7 +1126,7 @@ Java_hdf_hdf5lib_H5_H5DreadVL if ((num_members = H5Tget_nmembers(mem_type_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); - for (i = 0; i < (unsigned) num_members; i++) { + for (i = 0; i < (unsigned)num_members; i++) { if ((nested_tid = H5Tget_member_type((hid_t)mem_type_id, i)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1128,13 +1148,13 @@ Java_hdf_hdf5lib_H5_H5DreadVL } if (!isStr || isComplex || isVlenStr) { - if ((status = H5DreadVL_asstr(env, (hid_t)dataset_id, (hid_t)mem_type_id, - (hid_t)mem_space_id, (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0) + if ((status = H5DreadVL_asstr(env, (hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, + (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); } else if (isStr) { - if ((status = H5DreadVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id, - (hid_t)mem_space_id, (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0) + if ((status = H5DreadVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, + (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); } @@ -1151,28 +1171,29 @@ done: * buffer in turn. */ static herr_t -H5DreadVL_str - (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf) +H5DreadVL_str(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, + jobjectArray buf) { - jstring jstr; - jsize i, n; - char **strs = NULL; - herr_t status = FAIL; + jstring jstr; + jsize i, n; + char ** strs = NULL; + herr_t status = FAIL; if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5DreadVL_str: buf length < 0"); } - if (NULL == (strs = (char **) HDcalloc((size_t)n, sizeof(char *)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5DreadVL_str: failed to allocate variable length string read buffer"); + if (NULL == (strs = (char **)HDcalloc((size_t)n, sizeof(char *)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "H5DreadVL_str: failed to allocate variable length string read buffer"); if ((status = H5Dread(did, tid, mem_sid, file_sid, xfer_plist_id, strs)) < 0) H5_LIBRARY_ERROR(ENVONLY); /* * When repeatedly reading a dataset with a large number of strs (e.g., 1,000,000 strings), - * H5Dvlen_reclaim() may crash on Windows because the Java GC will not be able to collect + * H5Treclaim() may crash on Windows because the Java GC will not be able to collect * free space in time. Instead, we use "H5free_memory(strs[i])" to free individual strings * once done. */ @@ -1209,19 +1230,19 @@ done: * in the output buffer in turn. */ static herr_t -H5DreadVL_asstr - (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf) +H5DreadVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, + jobjectArray buf) { - H5T_class_t tclass; - jstring jstr; - h5str_t h5str; - hbool_t close_mem_space = FALSE; - size_t typeSize; - size_t i; - hid_t mem_space = mem_sid; - jsize n; - void *readBuf = NULL; - herr_t status = FAIL; + H5T_class_t tclass; + jstring jstr; + h5str_t h5str; + hbool_t close_mem_space = FALSE; + size_t typeSize; + size_t i; + hid_t mem_space = mem_sid; + jsize n; + void * readBuf = NULL; + herr_t status = FAIL; HDmemset(&h5str, 0, sizeof(h5str_t)); @@ -1230,7 +1251,7 @@ H5DreadVL_asstr if (mem_space == H5S_ALL) { /* - * Retrieve a valid dataspace for H5Dvlen_reclaim(). + * Retrieve a valid dataspace for H5Treclaim(). */ if ((mem_space = H5Dget_space(did)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1251,7 +1272,7 @@ H5DreadVL_asstr H5_LIBRARY_ERROR(ENVONLY); if (NULL == (readBuf = HDcalloc((size_t)n, typeSize))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5DreadVL_asstr: failed to allocate read buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5DreadVL_asstr: failed to allocate read buffer"); if ((status = H5Dread(did, tid, mem_sid, file_sid, xfer_plist_id, readBuf)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1260,22 +1281,22 @@ H5DreadVL_asstr h5str_new(&h5str, 4 * typeSize); if (!h5str.s) - H5_JNI_FATAL_ERROR(ENVONLY, "H5DreadVL_asstr: failed to allocate buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5DreadVL_asstr: failed to allocate buffer"); if ((tclass = H5Tget_class(tid)) < 0) H5_LIBRARY_ERROR(ENVONLY); /* Convert each element to a char string */ - for (i = 0; i < (size_t) n; i++) { + for (i = 0; i < (size_t)n; i++) { h5str.s[0] = '\0'; - if (!h5str_sprintf(ENVONLY, &h5str, did, tid, &(((char *) readBuf)[i * typeSize]), typeSize, 0)) + if (!h5str_sprintf(ENVONLY, &h5str, did, tid, &(((char *)readBuf)[i * typeSize]), 0)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - ENVPTR->SetObjectArrayElement(ENVONLY, buf, (jsize) i, jstr); + ENVPTR->SetObjectArrayElement(ENVONLY, buf, (jsize)i, jstr); CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); ENVPTR->DeleteLocalRef(ENVONLY, jstr); @@ -1285,7 +1306,7 @@ done: if (h5str.s) h5str_free(&h5str); if (readBuf) { - H5Dvlen_reclaim(tid, mem_space, xfer_plist_id, readBuf); + H5Treclaim(tid, mem_space, xfer_plist_id, readBuf); HDfree(readBuf); } if (close_mem_space) @@ -1307,12 +1328,12 @@ done: * Signature: (JJJJJ[Ljava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dread_1VLStrings - (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id, - jlong file_space_id, jlong xfer_plist_id, jobjectArray buf) +Java_hdf_hdf5lib_H5_H5Dread_1VLStrings(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, + jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, + jobjectArray buf) { htri_t isVlenStr = 0; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -1323,8 +1344,8 @@ Java_hdf_hdf5lib_H5_H5Dread_1VLStrings H5_LIBRARY_ERROR(ENVONLY); if (isVlenStr) { - if ((status = H5DreadVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id, - (hid_t)mem_space_id, (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0) + if ((status = H5DreadVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, + (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0) H5_LIBRARY_ERROR(ENVONLY); } else @@ -1340,17 +1361,16 @@ done: * Signature: (JJJJJ[Ljava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5DwriteVL - (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id, - jlong file_space_id, jlong xfer_plist_id, jobjectArray buf) +Java_hdf_hdf5lib_H5_H5DwriteVL(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, + jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, jobjectArray buf) { H5T_class_t type_class; - htri_t isStr = 0; - htri_t isVlenStr = 0; - htri_t isComplex = 0; + htri_t isStr = 0; + htri_t isVlenStr = 0; + htri_t isComplex = 0; htri_t isComplex2 = 0; hid_t nested_tid = H5I_INVALID_HID; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -1370,7 +1390,7 @@ Java_hdf_hdf5lib_H5_H5DwriteVL if ((num_members = H5Tget_nmembers(mem_type_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); - for (i = 0; i < (unsigned) num_members; i++) { + for (i = 0; i < (unsigned)num_members; i++) { if ((nested_tid = H5Tget_member_type((hid_t)mem_type_id, i)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1392,13 +1412,13 @@ Java_hdf_hdf5lib_H5_H5DwriteVL } if (!isStr || isComplex || isVlenStr) { - if ((status = H5DwriteVL_asstr(env, (hid_t)dataset_id, (hid_t)mem_type_id, - (hid_t)mem_space_id, (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0) + if ((status = H5DwriteVL_asstr(env, (hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, + (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); } else if (isStr) { - if ((status = H5DwriteVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id, - (hid_t)mem_space_id, (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0) + if ((status = H5DwriteVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, + (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); } @@ -1414,28 +1434,29 @@ done: * The buffer of C-strings is then written to the HDF5 dataset specified. */ static herr_t -H5DwriteVL_str - (JNIEnv *env, hid_t dataset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t xfer_plist_id, jobjectArray buf) +H5DwriteVL_str(JNIEnv *env, hid_t dataset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, + hid_t xfer_plist_id, jobjectArray buf) { - const char *utf8 = NULL; - jstring obj; - jsize size; - jsize i; - char **writeBuf = NULL; - herr_t status = FAIL; - - if ((size = ENVPTR->GetArrayLength(ENVONLY, (jarray) buf)) < 0) { + const char *utf8 = NULL; + jstring obj; + jsize size; + jsize i; + char ** writeBuf = NULL; + herr_t status = FAIL; + + if ((size = ENVPTR->GetArrayLength(ENVONLY, (jarray)buf)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5DwriteVL_str: buf length < 0"); } - if (NULL == (writeBuf = (char **) HDcalloc((size_t)size + 1, sizeof(char *)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5DwriteVL_str: failed to allocate variable length string write buffer"); + if (NULL == (writeBuf = (char **)HDcalloc((size_t)size + 1, sizeof(char *)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "H5DwriteVL_str: failed to allocate variable length string write buffer"); for (i = 0; i < size; ++i) { jsize length; - if (NULL == (obj = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)buf, i))) { + if (NULL == (obj = (jstring)ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)buf, i))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); /* @@ -1450,8 +1471,8 @@ H5DwriteVL_str PIN_JAVA_STRING(ENVONLY, obj, utf8, NULL, "H5DwriteVL_str: string not pinned"); - if (NULL == (writeBuf[i] = (char *) HDmalloc((size_t)length + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5DwriteVL_str: failed to allocate string buffer"); + if (NULL == (writeBuf[i] = (char *)HDmalloc((size_t)length + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5DwriteVL_str: failed to allocate string buffer"); HDstrncpy(writeBuf[i], utf8, (size_t)length + 1); writeBuf[i][length] = '\0'; @@ -1462,7 +1483,8 @@ H5DwriteVL_str ENVPTR->DeleteLocalRef(ENVONLY, obj); } /* end for (i = 0; i < size; ++i) */ - if ((status = H5Dwrite(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, writeBuf)) < 0) + if ((status = H5Dwrite(dataset_id, mem_type_id, mem_space_id, file_space_id, xfer_plist_id, writeBuf)) < + 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -1486,25 +1508,25 @@ done: * elements is then written to the HDF5 dataset. */ static herr_t -H5DwriteVL_asstr - (JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, jobjectArray buf) +H5DwriteVL_asstr(JNIEnv *env, hid_t did, hid_t tid, hid_t mem_sid, hid_t file_sid, hid_t xfer_plist_id, + jobjectArray buf) { - const char *utf8 = NULL; - jstring obj; + const char *utf8 = NULL; + jstring obj = NULL; hbool_t close_mem_space = FALSE; size_t typeSize; size_t i; hid_t mem_space = mem_sid; jsize n; - void *writeBuf = NULL; - herr_t status = FAIL; + void * writeBuf = NULL; + herr_t status = FAIL; if (mem_space == H5S_ALL) { mem_space = file_sid; if (mem_space == H5S_ALL) { /* - * Retrieve a valid dataspace for H5Dvlen_reclaim(). + * Retrieve a valid dataspace for H5Treclaim(). */ if ((mem_space = H5Dget_space(did)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1524,16 +1546,16 @@ H5DwriteVL_asstr H5_LIBRARY_ERROR(ENVONLY); if (NULL == (writeBuf = HDcalloc((size_t)n, typeSize))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5AwriteVL_asstr: failed to allocate write buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5AwriteVL_asstr: failed to allocate write buffer"); - for (i = 0; i < (size_t) n; ++i) { - if (NULL == (obj = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)buf, (jsize) i))) { + for (i = 0; i < (size_t)n; ++i) { + if (NULL == (obj = (jstring)ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)buf, (jsize)i))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); /* * If the string object was NULL, skip it. */ - HDmemset(&(((char *) writeBuf)[i * typeSize]), 0, typeSize); + HDmemset(&(((char *)writeBuf)[i * typeSize]), 0, typeSize); continue; } @@ -1549,7 +1571,7 @@ H5DwriteVL_asstr * one before destroying it with h5str_convert. */ - if (!h5str_convert(ENVONLY, (char **) &utf8, did, tid, &(((char *) writeBuf)[i * typeSize]), 0)) + if (!h5str_convert(ENVONLY, (char **)&utf8, did, tid, &(((char *)writeBuf)[i * typeSize]), 0)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); UNPIN_JAVA_STRING(ENVONLY, obj, utf8); @@ -1565,7 +1587,7 @@ done: if (utf8) UNPIN_JAVA_STRING(ENVONLY, obj, utf8); if (writeBuf) { - H5Dvlen_reclaim(tid, mem_space, xfer_plist_id, writeBuf); + H5Treclaim(tid, mem_space, xfer_plist_id, writeBuf); HDfree(writeBuf); } if (close_mem_space) @@ -1580,12 +1602,12 @@ done: * Signature: (JJJJJ[Ljava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dwrite_1VLStrings - (JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, jlong mem_space_id, - jlong file_space_id, jlong xfer_plist_id, jobjectArray buf) +Java_hdf_hdf5lib_H5_H5Dwrite_1VLStrings(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, + jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, + jobjectArray buf) { - htri_t isVlenStr = 0; - herr_t status = FAIL; + htri_t isVlenStr = 0; + herr_t status = FAIL; UNUSED(clss); @@ -1596,8 +1618,8 @@ Java_hdf_hdf5lib_H5_H5Dwrite_1VLStrings H5_LIBRARY_ERROR(ENVONLY); if (isVlenStr) { - if ((status = H5DwriteVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id, - (hid_t)mem_space_id, (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0) + if ((status = H5DwriteVL_str(env, (hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, + (hid_t)file_space_id, (hid_t)xfer_plist_id, buf)) < 0) H5_LIBRARY_ERROR(ENVONLY); } /* end if */ else @@ -1613,16 +1635,15 @@ done: * Signature: (JJJJJ[Ljava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dread_1reg_1ref - (JNIEnv *env, jclass clss, - jlong dataset_id, jlong mem_type_id, jlong mem_space_id, - jlong file_space_id, jlong xfer_plist_id, jobjectArray buf) +Java_hdf_hdf5lib_H5_H5Dread_1reg_1ref(JNIEnv *env, jclass clss, jlong dataset_id, jlong mem_type_id, + jlong mem_space_id, jlong file_space_id, jlong xfer_plist_id, + jobjectArray buf) { - hdset_reg_ref_t *ref_data = NULL; - h5str_t h5str; - jstring jstr; - jsize i, n; - herr_t status = FAIL; + H5R_ref_t *ref_data = NULL; + h5str_t h5str; + jstring jstr; + jsize i, n; + herr_t status = FAIL; UNUSED(clss); @@ -1633,21 +1654,22 @@ Java_hdf_hdf5lib_H5_H5Dread_1reg_1ref H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Dread_reg_ref: buf length < 0"); } - if (NULL == (ref_data = (hdset_reg_ref_t *) HDcalloc(1, (size_t)n * sizeof(hdset_reg_ref_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Dread_reg_ref: failed to allocate read buffer"); + if (NULL == (ref_data = (H5R_ref_t *)HDcalloc(1, (size_t)n * sizeof(H5R_ref_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dread_reg_ref: failed to allocate read buffer"); - if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id, xfer_plist_id, ref_data)) < 0) + if ((status = H5Dread((hid_t)dataset_id, (hid_t)mem_type_id, (hid_t)mem_space_id, (hid_t)file_space_id, + xfer_plist_id, ref_data)) < 0) H5_LIBRARY_ERROR(ENVONLY); h5str_new(&h5str, 1024); if (!h5str.s) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Dread_reg_ref: failed to allocate buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dread_reg_ref: failed to allocate buffer"); for (i = 0; i < n; i++) { h5str.s[0] = '\0'; - if (!h5str_sprintf(ENVONLY, &h5str, (hid_t)dataset_id, (hid_t)mem_type_id, &ref_data[i], 0, 0)) + if (!h5str_sprintf(ENVONLY, &h5str, (hid_t)dataset_id, (hid_t)mem_type_id, (void *)&ref_data[i], 0)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s))) @@ -1674,12 +1696,12 @@ done: * Signature: (JLjava/lang/String;JJJJJ)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Dcreate2 - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong type_id, - jlong space_id, jlong link_plist_id, jlong create_plist_id, jlong access_plist_id) +Java_hdf_hdf5lib_H5__1H5Dcreate2(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong type_id, + jlong space_id, jlong link_plist_id, jlong create_plist_id, + jlong access_plist_id) { const char *dsetName = NULL; - hid_t dset_id = H5I_INVALID_HID; + hid_t dset_id = H5I_INVALID_HID; UNUSED(clss); @@ -1688,7 +1710,8 @@ Java_hdf_hdf5lib_H5__1H5Dcreate2 PIN_JAVA_STRING(ENVONLY, name, dsetName, NULL, "H5Dcreate2: dataset name not pinned"); - if ((dset_id = H5Dcreate2((hid_t)loc_id, dsetName, (hid_t)type_id, (hid_t)space_id, (hid_t)link_plist_id, (hid_t)create_plist_id, (hid_t)access_plist_id)) < 0) + if ((dset_id = H5Dcreate2((hid_t)loc_id, dsetName, (hid_t)type_id, (hid_t)space_id, (hid_t)link_plist_id, + (hid_t)create_plist_id, (hid_t)access_plist_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -1704,11 +1727,10 @@ done: * Signature: (JLjava/lang/String;J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Dopen2 - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_plist) +Java_hdf_hdf5lib_H5__1H5Dopen2(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_plist) { const char *dsetName = NULL; - hid_t dset_id = H5I_INVALID_HID; + hid_t dset_id = H5I_INVALID_HID; UNUSED(clss); @@ -1733,14 +1755,15 @@ done: * Signature: (JJJJJ)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Dcreate_1anon - (JNIEnv *env, jclass clss, jlong loc_id, jlong type_id, jlong space_id, jlong dcpl_id, jlong dapl_id) +Java_hdf_hdf5lib_H5__1H5Dcreate_1anon(JNIEnv *env, jclass clss, jlong loc_id, jlong type_id, jlong space_id, + jlong dcpl_id, jlong dapl_id) { hid_t dset_id = H5I_INVALID_HID; UNUSED(clss); - if ((dset_id = H5Dcreate_anon((hid_t)loc_id, (hid_t)type_id, (hid_t)space_id, (hid_t)dcpl_id, (hid_t)dapl_id)) < 0) + if ((dset_id = H5Dcreate_anon((hid_t)loc_id, (hid_t)type_id, (hid_t)space_id, (hid_t)dcpl_id, + (hid_t)dapl_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -1753,8 +1776,7 @@ done: * Signature: (J)I; */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dget_1space_1status - (JNIEnv *env, jclass clss, jlong loc_id) +Java_hdf_hdf5lib_H5_H5Dget_1space_1status(JNIEnv *env, jclass clss, jlong loc_id) { H5D_space_status_t space_status = H5D_SPACE_STATUS_ERROR; @@ -1773,8 +1795,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Dget_1access_1plist - (JNIEnv *env, jclass clss, jlong loc_id) +Java_hdf_hdf5lib_H5_H5Dget_1access_1plist(JNIEnv *env, jclass clss, jlong loc_id) { hid_t retVal = H5I_INVALID_HID; @@ -1793,8 +1814,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Dget_1offset - (JNIEnv *env, jclass clss, jlong loc_id) +Java_hdf_hdf5lib_H5_H5Dget_1offset(JNIEnv *env, jclass clss, jlong loc_id) { haddr_t offset = HADDR_UNDEF; @@ -1813,8 +1833,8 @@ done: * Signature: (JJJ)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Dvlen_1get_1buf_1size - (JNIEnv *env, jclass clss, jlong dataset_id, jlong type_id, jlong space_id) +Java_hdf_hdf5lib_H5_H5Dvlen_1get_1buf_1size(JNIEnv *env, jclass clss, jlong dataset_id, jlong type_id, + jlong space_id) { hsize_t sz = 0; @@ -1833,14 +1853,14 @@ done: * Signature: ([BJ[BJJ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Dfill - (JNIEnv *env, jclass clss, jbyteArray fill, jlong fill_type_id, jbyteArray buf, jlong buf_type_id, jlong space_id) +Java_hdf_hdf5lib_H5_H5Dfill(JNIEnv *env, jclass clss, jbyteArray fill, jlong fill_type_id, jbyteArray buf, + jlong buf_type_id, jlong space_id) { - jboolean isCopy1; - jboolean isCopy2; - herr_t status = FAIL; - jbyte *fillP = NULL; - jbyte *buffP = NULL; + jboolean isCopy1; + jboolean isCopy2; + herr_t status = FAIL; + jbyte * fillP = NULL; + jbyte * buffP = NULL; UNUSED(clss); @@ -1853,7 +1873,8 @@ Java_hdf_hdf5lib_H5_H5Dfill PIN_BYTE_ARRAY(ENVONLY, fill, fillP, &isCopy1, "H5Dfill: fill buffer not pinned"); } - if ((status = H5Dfill((const void *)fillP, (hid_t)fill_type_id, (void *)buffP, (hid_t)buf_type_id, (hid_t)space_id)) < 0) + if ((status = H5Dfill((const void *)fillP, (hid_t)fill_type_id, (void *)buffP, (hid_t)buf_type_id, + (hid_t)space_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (fillP) { @@ -1874,15 +1895,14 @@ done: * Signature: (J[J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Dset_1extent - (JNIEnv *env, jclass clss, jlong loc_id, jlongArray buf) +Java_hdf_hdf5lib_H5_H5Dset_1extent(JNIEnv *env, jclass clss, jlong loc_id, jlongArray buf) { - jboolean isCopy; - hsize_t *dims = NULL; - herr_t status; - jsize rank; - jlong *dimsBuf = NULL; - int i = 0; + jboolean isCopy; + hsize_t *dims = NULL; + herr_t status; + jsize rank; + jlong * dimsBuf = NULL; + int i = 0; UNUSED(clss); @@ -1896,8 +1916,8 @@ Java_hdf_hdf5lib_H5_H5Dset_1extent PIN_LONG_ARRAY(ENVONLY, buf, dimsBuf, &isCopy, "H5Dset_extent: buffer not pinned"); - if (NULL == (dims = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Dset_extent: failed to allocate dataset dimension buffer"); + if (NULL == (dims = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dset_extent: failed to allocate dataset dimension buffer"); for (i = 0; i < rank; i++) dims[i] = (hsize_t)dimsBuf[i]; @@ -1913,18 +1933,18 @@ done: } /* end Java_hdf_hdf5lib_H5_H5Dset_1extent */ static herr_t -H5D_iterate_cb - (void *elem, hid_t elem_id, unsigned ndim, const hsize_t *point, void *cb_data) { +H5D_iterate_cb(void *elem, hid_t elem_id, unsigned ndim, const hsize_t *point, void *cb_data) +{ cb_wrapper *wrapper = (cb_wrapper *)cb_data; jbyteArray elemArray; jlongArray pointArray; jmethodID mid; jobject visit_callback = wrapper->visit_callback; jclass cls; - JNIEnv *cbenv = NULL; + JNIEnv * cbenv = NULL; jint status = FAIL; jsize size; - void *op_data = (void *)wrapper->op_data; + void * op_data = (void *)wrapper->op_data; if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) { CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE); @@ -1934,7 +1954,8 @@ H5D_iterate_cb if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "([BJI[JLhdf/hdf5lib/callbacks/H5D_iterate_t;)I"))) + if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", + "([BJI[JLhdf/hdf5lib/callbacks/H5D_iterate_t;)I"))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); if (NULL == elem) @@ -1957,7 +1978,8 @@ H5D_iterate_cb CBENVPTR->SetLongArrayRegion(CBENVONLY, pointArray, 0, 2, (const jlong *)point); CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, (void *)elemArray, elem_id, ndim, pointArray, op_data); + status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, (void *)elemArray, elem_id, ndim, + pointArray, op_data); CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); CBENVPTR->GetByteArrayRegion(CBENVONLY, elemArray, 0, size, (jbyte *)elem); @@ -1976,14 +1998,13 @@ done: * Signature: ([BJJLjava/lang/Object;Ljava/lang/Object;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Diterate - (JNIEnv *env, jclass clss, jbyteArray buf, jlong buf_type, jlong space, - jobject callback_op, jobject op_data) +Java_hdf_hdf5lib_H5_H5Diterate(JNIEnv *env, jclass clss, jbyteArray buf, jlong buf_type, jlong space, + jobject callback_op, jobject op_data) { - cb_wrapper wrapper = { callback_op, op_data }; - jboolean isCopy; - jbyte *iterBuf = NULL; - herr_t status = FAIL; + cb_wrapper wrapper = {callback_op, op_data}; + jboolean isCopy; + jbyte * iterBuf = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -1999,12 +2020,14 @@ Java_hdf_hdf5lib_H5_H5Diterate PIN_BYTE_ARRAY(ENVONLY, buf, iterBuf, &isCopy, "H5Diterate: buffer not pinned"); - if ((status = H5Diterate((void *)iterBuf, (hid_t)buf_type, (hid_t)space, (H5D_operator_t)H5D_iterate_cb, (void *)&wrapper)) < 0) + if ((status = H5Diterate((void *)iterBuf, (hid_t)buf_type, (hid_t)space, (H5D_operator_t)H5D_iterate_cb, + (void *)&wrapper)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: if (iterBuf) - UNPIN_BYTE_ARRAY(ENVONLY, buf, iterBuf, (status < 0) ? (JNI_ABORT) : ((isCopy == JNI_TRUE) ? 0 : JNI_ABORT)); + UNPIN_BYTE_ARRAY(ENVONLY, buf, iterBuf, + (status < 0) ? (JNI_ABORT) : ((isCopy == JNI_TRUE) ? 0 : JNI_ABORT)); return (jint)status; } /* end Java_hdf_hdf5lib_H5_H5Diterate */ @@ -2015,8 +2038,7 @@ done: * Signature: (J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Dflush - (JNIEnv *env, jclass clss, jlong loc_id) +Java_hdf_hdf5lib_H5_H5Dflush(JNIEnv *env, jclass clss, jlong loc_id) { UNUSED(clss); @@ -2033,8 +2055,7 @@ done: * Signature: (J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Drefresh - (JNIEnv *env, jclass clss, jlong loc_id) +Java_hdf_hdf5lib_H5_H5Drefresh(JNIEnv *env, jclass clss, jlong loc_id) { UNUSED(clss); diff --git a/java/src/jni/h5dImp.h b/java/src/jni/h5dImp.h index f824452..e339dad 100644 --- a/java/src/jni/h5dImp.h +++ b/java/src/jni/h5dImp.h @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -14,367 +13,313 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5D */ -#ifndef _Included_hdf_hdf5lib_H5_H5D -#define _Included_hdf_hdf5lib_H5_H5D +#ifndef Included_hdf_hdf5lib_H5_H5D +#define Included_hdf_hdf5lib_H5_H5D #ifdef __cplusplus extern "C" { #endif /* __cplusplus */ - /* * Class: hdf_hdf5lib_H5 * Method: _H5Dcreate * Signature: (JLjava/lang/String;JJJ)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Dcreate - (JNIEnv*, jclass, jlong, jstring, jlong, jlong, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Dcreate(JNIEnv *, jclass, jlong, jstring, jlong, jlong, + jlong); /* * Class: hdf_hdf5lib_H5 * Method: _H5Dopen * Signature: (JLjava/lang/String;)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Dopen - (JNIEnv*, jclass, jlong, jstring); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Dopen(JNIEnv *, jclass, jlong, jstring); /* * Class: hdf_hdf5lib_H5 * Method: _H5Dget_space * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Dget_1space - (JNIEnv*, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Dget_1space(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: _H5Dget_type * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Dget_1type - (JNIEnv*, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Dget_1type(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: _H5Dget_create_plist * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Dget_1create_1plist - (JNIEnv*, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Dget_1create_1plist(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Dread * Signature: (JJJJJ[BZ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dread - (JNIEnv*, jclass, jlong, jlong, jlong, jlong, jlong, jbyteArray, jboolean); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Dread(JNIEnv *, jclass, jlong, jlong, jlong, jlong, jlong, + jbyteArray, jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Dwrite * Signature: (JJJJJ[BZ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dwrite - (JNIEnv*, jclass, jlong, jlong, jlong, jlong, jlong, jbyteArray, jboolean); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Dwrite(JNIEnv *, jclass, jlong, jlong, jlong, jlong, jlong, + jbyteArray, jboolean); /* * Class: hdf_hdf5lib_H5 * Method: _H5Dclose * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5__1H5Dclose - (JNIEnv*, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5__1H5Dclose(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Dget_storage_size * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Dget_1storage_1size - (JNIEnv*, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Dget_1storage_1size(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Dvlen_reclaim * Signature: (JJJ[B)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dvlen_1reclaim - (JNIEnv*, jclass, jlong, jlong, jlong, jbyteArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Dvlen_1reclaim(JNIEnv *, jclass, jlong, jlong, jlong, + jbyteArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Dread_short * Signature: (JJJJJ[SZ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dread_1short - (JNIEnv*, jclass, jlong, jlong, jlong, jlong, jlong, jshortArray, jboolean); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Dread_1short(JNIEnv *, jclass, jlong, jlong, jlong, jlong, jlong, + jshortArray, jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Dwrite_short * Signature: (JJJJJ[SZ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dwrite_1short - (JNIEnv*, jclass, jlong, jlong, jlong, jlong, jlong, jshortArray, jboolean); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Dwrite_1short(JNIEnv *, jclass, jlong, jlong, jlong, jlong, + jlong, jshortArray, jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Dread_int * Signature: (JJJJJ[IZ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dread_1int - (JNIEnv*, jclass, jlong, jlong, jlong, jlong, jlong, jintArray, jboolean); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Dread_1int(JNIEnv *, jclass, jlong, jlong, jlong, jlong, jlong, + jintArray, jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Dwrite_int * Signature: (JJJJJ[IZ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dwrite_1int - (JNIEnv*, jclass, jlong, jlong, jlong, jlong, jlong, jintArray, jboolean); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Dwrite_1int(JNIEnv *, jclass, jlong, jlong, jlong, jlong, jlong, + jintArray, jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Dread_long * Signature: (JJJJJ[JZ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dread_1long - (JNIEnv*, jclass, jlong, jlong, jlong, jlong, jlong, jlongArray, jboolean); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Dread_1long(JNIEnv *, jclass, jlong, jlong, jlong, jlong, jlong, + jlongArray, jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Dwrite_long * Signature: (JJJJJ[JZ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dwrite_1long - (JNIEnv*, jclass, jlong, jlong, jlong, jlong, jlong, jlongArray, jboolean); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Dwrite_1long(JNIEnv *, jclass, jlong, jlong, jlong, jlong, jlong, + jlongArray, jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Dread_float * Signature: (JJJJJ[FZ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dread_1float - (JNIEnv*, jclass, jlong, jlong, jlong, jlong, jlong, jfloatArray, jboolean); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Dread_1float(JNIEnv *, jclass, jlong, jlong, jlong, jlong, jlong, + jfloatArray, jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Dwrite_float * Signature: (JJJJJ[FZ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dwrite_1float - (JNIEnv*, jclass, jlong, jlong, jlong, jlong, jlong, jfloatArray, jboolean); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Dwrite_1float(JNIEnv *, jclass, jlong, jlong, jlong, jlong, + jlong, jfloatArray, jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Dread_double * Signature: (JJJJJ[DZ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dread_1double - (JNIEnv*, jclass, jlong, jlong, jlong, jlong, jlong, jdoubleArray, jboolean); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Dread_1double(JNIEnv *, jclass, jlong, jlong, jlong, jlong, + jlong, jdoubleArray, jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Dwrite_double * Signature: (JJJJJ[DZ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dwrite_1double - (JNIEnv*, jclass, jlong, jlong, jlong, jlong, jlong, jdoubleArray, jboolean); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Dwrite_1double(JNIEnv *, jclass, jlong, jlong, jlong, jlong, + jlong, jdoubleArray, jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5DreadVL * Signature: (JJJJJ[Ljava/lang/String;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5DreadVL -(JNIEnv*, jclass, jlong, jlong, jlong, jlong, jlong, jobjectArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5DreadVL(JNIEnv *, jclass, jlong, jlong, jlong, jlong, jlong, + jobjectArray); /* * Class: hdf_hdf5lib_H5 * Method: H5DwriteVL * Signature: (JJJJJ[Ljava/lang/String;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5DwriteVL -(JNIEnv*, jclass, jlong, jlong, jlong, jlong, jlong, jobjectArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5DwriteVL(JNIEnv *, jclass, jlong, jlong, jlong, jlong, jlong, + jobjectArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Dread_string * Signature: (JJJJJ[Ljava/lang/String;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dread_1string - (JNIEnv*, jclass, jlong, jlong, jlong, jlong, jlong, jobjectArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Dread_1string(JNIEnv *, jclass, jlong, jlong, jlong, jlong, + jlong, jobjectArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Dwrite_string * Signature: (JJJJJ[Ljava/lang/String;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dwrite_1string -(JNIEnv*, jclass, jlong, jlong, jlong, jlong, jlong, jobjectArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Dwrite_1string(JNIEnv *, jclass, jlong, jlong, jlong, jlong, + jlong, jobjectArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Dread_VLStrings * Signature: (JJJJJ[Ljava/lang/String;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dread_1VLStrings -(JNIEnv*, jclass, jlong, jlong, jlong, jlong, jlong, jobjectArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Dread_1VLStrings(JNIEnv *, jclass, jlong, jlong, jlong, jlong, + jlong, jobjectArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Dwrite_VLStrings * Signature: (JJJJJ[B)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dwrite_1VLStrings - (JNIEnv*, jclass, jlong, jlong, jlong, jlong, jlong, jobjectArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Dwrite_1VLStrings(JNIEnv *, jclass, jlong, jlong, jlong, jlong, + jlong, jobjectArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Dread_reg_ref * Signature: (JJJJJ[Ljava/lang/String;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dread_1reg_1ref -(JNIEnv*, jclass, jlong, jlong, jlong, jlong, jlong, jobjectArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Dread_1reg_1ref(JNIEnv *, jclass, jlong, jlong, jlong, jlong, + jlong, jobjectArray); /* * Class: hdf_hdf5lib_H5 * Method: _H5Dcreate2 * Signature: (JLjava/lang/String;JJJJJ)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Dcreate2 - (JNIEnv*, jclass, jlong, jstring, jlong, jlong, jlong, jlong, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Dcreate2(JNIEnv *, jclass, jlong, jstring, jlong, jlong, + jlong, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: _H5Dopen2 * Signature: (JLjava/lang/String;J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Dopen2 - (JNIEnv*, jclass, jlong, jstring, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Dopen2(JNIEnv *, jclass, jlong, jstring, jlong); /* * Class: hdf_hdf5lib_H5 * Method: _H5Dcreate_anon * Signature: (JJJJJ)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Dcreate_1anon - (JNIEnv*, jclass, jlong, jlong, jlong, jlong, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Dcreate_1anon(JNIEnv *, jclass, jlong, jlong, jlong, jlong, + jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Dget_space_status * Signature: (J)I; */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dget_1space_1status - (JNIEnv*, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Dget_1space_1status(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Dget_access_plist * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Dget_1access_1plist - (JNIEnv*, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Dget_1access_1plist(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Dget_offset * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Dget_1offset - (JNIEnv*, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Dget_1offset(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Dvlen_get_buf_size * Signature: (JJJ)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Dvlen_1get_1buf_1size - (JNIEnv*, jclass, jlong, jlong, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Dvlen_1get_1buf_1size(JNIEnv *, jclass, jlong, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Dfill * Signature: ([BJ[BJJ)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Dfill - (JNIEnv*, jclass, jbyteArray, jlong, jbyteArray, jlong, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Dfill(JNIEnv *, jclass, jbyteArray, jlong, jbyteArray, jlong, + jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Dset_extent * Signature: (J[J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Dset_1extent - (JNIEnv*, jclass, jlong, jlongArray); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Dset_1extent(JNIEnv *, jclass, jlong, jlongArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Diterate * Signature: ([BJJLjava/lang/Object;Ljava/lang/Object;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Diterate - (JNIEnv*, jclass, jbyteArray, jlong, jlong, jobject, jobject); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Diterate(JNIEnv *, jclass, jbyteArray, jlong, jlong, jobject, + jobject); /* * Class: hdf_hdf5lib_H5 * Method: H5Dflush * Signature: (J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Dflush - (JNIEnv*, jclass, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Dflush(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Drefresh * Signature: (J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Drefresh - (JNIEnv*, jclass, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Drefresh(JNIEnv *, jclass, jlong); #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5D */ +#endif /* Included_hdf_hdf5lib_H5_H5D */ diff --git a/java/src/jni/h5eImp.c b/java/src/jni/h5eImp.c index 937323e..5bdeae8 100644 --- a/java/src/jni/h5eImp.c +++ b/java/src/jni/h5eImp.c @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -61,8 +60,7 @@ static herr_t H5E_walk_cb(int nindx, const H5E_error2_t *info, void *cb_data); * Signature: (J)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Eauto_1is_1v2 - (JNIEnv *env, jclass clss, jlong stk_id) +Java_hdf_hdf5lib_H5_H5Eauto_1is_1v2(JNIEnv *env, jclass clss, jlong stk_id) { unsigned int is_stack = 0; @@ -84,13 +82,13 @@ done: * Signature: (Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Eregister_1class - (JNIEnv *env, jclass clss, jstring cls_name, jstring lib_name, jstring version) +Java_hdf_hdf5lib_H5_H5Eregister_1class(JNIEnv *env, jclass clss, jstring cls_name, jstring lib_name, + jstring version) { - const char* the_cls_name = NULL; - const char* the_lib_name = NULL; - const char* the_version = NULL; - hid_t ret_val = H5I_INVALID_HID; + const char *the_cls_name = NULL; + const char *the_lib_name = NULL; + const char *the_version = NULL; + hid_t ret_val = H5I_INVALID_HID; UNUSED(clss); @@ -125,8 +123,7 @@ done: * Signature: (J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Eunregister_1class - (JNIEnv *env, jclass clss, jlong cls_id) +Java_hdf_hdf5lib_H5_H5Eunregister_1class(JNIEnv *env, jclass clss, jlong cls_id) { UNUSED(clss); @@ -146,8 +143,7 @@ done: * Signature: (J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Eclose_1msg - (JNIEnv *env, jclass clss, jlong err_id) +Java_hdf_hdf5lib_H5_H5Eclose_1msg(JNIEnv *env, jclass clss, jlong err_id) { UNUSED(clss); @@ -167,12 +163,11 @@ done: * Signature: (JILjava/lang/String;)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Ecreate_1msg - (JNIEnv *env, jclass clss, jlong err_id, jint msg_type, jstring err_msg) +Java_hdf_hdf5lib_H5_H5Ecreate_1msg(JNIEnv *env, jclass clss, jlong err_id, jint msg_type, jstring err_msg) { H5E_type_t error_msg_type = (H5E_type_t)msg_type; - const char *the_err_msg = NULL; - hid_t ret_val = H5I_INVALID_HID; + const char *the_err_msg = NULL; + hid_t ret_val = H5I_INVALID_HID; UNUSED(clss); @@ -199,8 +194,7 @@ done: * Signature: ()J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Ecreate_1stack - (JNIEnv *env, jclass clss) +Java_hdf_hdf5lib_H5_H5Ecreate_1stack(JNIEnv *env, jclass clss) { hid_t ret_val = H5I_INVALID_HID; @@ -219,8 +213,7 @@ done: * Signature: ()J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Eget_1current_1stack - (JNIEnv *env, jclass clss) +Java_hdf_hdf5lib_H5_H5Eget_1current_1stack(JNIEnv *env, jclass clss) { hid_t ret_val = H5I_INVALID_HID; @@ -239,8 +232,7 @@ done: * Signature: (J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Eclose_1stack - (JNIEnv *env, jclass clss, jlong stk_id) +Java_hdf_hdf5lib_H5_H5Eclose_1stack(JNIEnv *env, jclass clss, jlong stk_id) { UNUSED(clss); @@ -260,8 +252,7 @@ done: * Signature: (JLjava/lang/Object;)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Eprint2 - (JNIEnv *env, jclass clss, jlong stk_id, jobject stream_obj) +Java_hdf_hdf5lib_H5_H5Eprint2(JNIEnv *env, jclass clss, jlong stk_id, jobject stream_obj) { herr_t ret_val = FAIL; @@ -289,12 +280,11 @@ done: * Signature: (J)Ljava/lang/String; */ JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Eget_1class_1name - (JNIEnv *env, jclass clss, jlong cls_id) +Java_hdf_hdf5lib_H5_H5Eget_1class_1name(JNIEnv *env, jclass clss, jlong cls_id) { - jstring str = NULL; - ssize_t buf_size; - char *namePtr = NULL; + jstring str = NULL; + ssize_t buf_size; + char * namePtr = NULL; UNUSED(clss); @@ -308,8 +298,8 @@ Java_hdf_hdf5lib_H5_H5Eget_1class_1name if (!buf_size) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eget_class_name: no class name"); - if (NULL == (namePtr = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Eget_class_name: malloc failed"); + if (NULL == (namePtr = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Eget_class_name: malloc failed"); if ((H5Eget_class_name((hid_t)cls_id, (char *)namePtr, (size_t)buf_size + 1)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -331,8 +321,7 @@ done: * Signature: (J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Eset_1current_1stack - (JNIEnv *env, jclass clss, jlong stk_id) +Java_hdf_hdf5lib_H5_H5Eset_1current_1stack(JNIEnv *env, jclass clss, jlong stk_id) { UNUSED(clss); @@ -352,8 +341,7 @@ done: * Signature: (JJ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Epop - (JNIEnv *env, jclass clss, jlong stk_id, jlong count) +Java_hdf_hdf5lib_H5_H5Epop(JNIEnv *env, jclass clss, jlong stk_id, jlong count) { UNUSED(clss); @@ -373,13 +361,13 @@ done: * Signature: (JLjava/lang/String;Ljava/lang/String;IJJJLjava/lang/String;)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Epush2 - (JNIEnv *env, jclass clss, jlong stk_id, jstring filename, jstring funcname, - jint linenumber, jlong class_id, jlong major_id, jlong minor_id, jstring err_desc) +Java_hdf_hdf5lib_H5_H5Epush2(JNIEnv *env, jclass clss, jlong stk_id, jstring filename, jstring funcname, + jint linenumber, jlong class_id, jlong major_id, jlong minor_id, + jstring err_desc) { - const char *fName = NULL; + const char *fName = NULL; const char *fncName = NULL; - const char *errMsg = NULL; + const char *errMsg = NULL; herr_t ret_val = FAIL; UNUSED(clss); @@ -404,7 +392,7 @@ Java_hdf_hdf5lib_H5_H5Epush2 PIN_JAVA_STRING(ENVONLY, err_desc, errMsg, NULL, "H5Epush2: error message not pinned"); if ((ret_val = H5Epush2((hid_t)stk_id, fName, fncName, (unsigned)linenumber, (hid_t)class_id, - (hid_t)major_id, (hid_t)minor_id, errMsg)) < 0) + (hid_t)major_id, (hid_t)minor_id, errMsg)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -422,8 +410,7 @@ done: * Signature: (J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Eclear2 - (JNIEnv *env, jclass clss, jlong stk_id) +Java_hdf_hdf5lib_H5_H5Eclear2(JNIEnv *env, jclass clss, jlong stk_id) { UNUSED(clss); @@ -443,14 +430,13 @@ done: * Signature: (J[I)Ljava/lang/String; */ JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Eget_1msg - (JNIEnv *env, jclass clss, jlong msg_id, jintArray error_msg_type_list) +Java_hdf_hdf5lib_H5_H5Eget_1msg(JNIEnv *env, jclass clss, jlong msg_id, jintArray error_msg_type_list) { - H5E_type_t error_msg_type; - jstring str = NULL; - ssize_t buf_size; - jint *theArray = NULL; - char *namePtr = NULL; + H5E_type_t error_msg_type; + jstring str = NULL; + ssize_t buf_size; + jint * theArray = NULL; + char * namePtr = NULL; UNUSED(clss); @@ -464,10 +450,10 @@ Java_hdf_hdf5lib_H5_H5Eget_1msg H5_LIBRARY_ERROR(ENVONLY); if (!buf_size) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Eget_msg: invalid message"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Eget_msg: invalid message"); - if (NULL == (namePtr = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Eget_msg: malloc failed"); + if (NULL == (namePtr = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Eget_msg: malloc failed"); PIN_INT_ARRAY(ENVONLY, error_msg_type_list, theArray, NULL, "H5Eget_msg: error_msg_type_list not pinned"); @@ -495,8 +481,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Eget_1num - (JNIEnv *env, jclass clss, jlong stk_id) +Java_hdf_hdf5lib_H5_H5Eget_1num(JNIEnv *env, jclass clss, jlong stk_id) { ssize_t ret_val = -1; @@ -513,30 +498,30 @@ done: } /* end Java_hdf_hdf5lib_H5_H5Eget_1num */ static herr_t -H5E_walk_cb - (int nindx, const H5E_error2_t *info, void *cb_data) +H5E_walk_cb(int nindx, const H5E_error2_t *info, void *cb_data) { cb_wrapper *wrapper = (cb_wrapper *)cb_data; - jmethodID constructor; jmethodID mid; jobject visit_callback = wrapper->visit_callback; jstring str1, str2, str3; jobject cb_info_t = NULL; jvalue args[7]; - JNIEnv *cbenv = NULL; - jclass cls; - void *op_data = (void *)wrapper->op_data; - jint status = FAIL; + JNIEnv * cbenv = NULL; + jclass cbcls; + void * op_data = (void *)wrapper->op_data; + jint status = FAIL; if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) { CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE); H5_JNI_FATAL_ERROR(CBENVONLY, "H5E_walk_cb: failed to attach current thread to JVM"); } - if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback))) + if (NULL == (cbcls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(ILhdf/hdf5lib/structs/H5E_error2_t;Lhdf/hdf5lib/callbacks/H5E_walk_t;)I"))) + if (NULL == (mid = CBENVPTR->GetMethodID( + CBENVONLY, cbcls, "callback", + "(ILhdf/hdf5lib/structs/H5E_error2_t;Lhdf/hdf5lib/callbacks/H5E_walk_t;)I"))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); args[0].j = info->cls_id; @@ -559,16 +544,8 @@ H5E_walk_cb args[6].l = str3; - /* Get a reference to your class if you don't have it already */ - if (NULL == (cls = CBENVPTR->FindClass(CBENVONLY, "hdf/hdf5lib/structs/H5E_error2_t"))) - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - - /* get a reference to the constructor; the name is <init> */ - if (NULL == (constructor = CBENVPTR->GetMethodID(CBENVONLY, cls, "<init>", "(JJJILjava/lang/String;Ljava/lang/String;Ljava/lang/String;)V"))) - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - - if (NULL == (cb_info_t = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args))) - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); + CALL_CONSTRUCTOR(CBENVONLY, "hdf/hdf5lib/structs/H5E_error2_t", + "(JJJILjava/lang/String;Ljava/lang/String;Ljava/lang/String;)V", args, cb_info_t); status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, nindx, cb_info_t, op_data); CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); @@ -586,10 +563,10 @@ done: * Signature: (JJLjava/lang/Object;Ljava/lang/Object;)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Ewalk2 - (JNIEnv *env, jclass clss, jlong stk_id, jlong direction, jobject callback_op, jobject op_data) +Java_hdf_hdf5lib_H5_H5Ewalk2(JNIEnv *env, jclass clss, jlong stk_id, jlong direction, jobject callback_op, + jobject op_data) { - cb_wrapper wrapper = { callback_op, op_data }; + cb_wrapper wrapper = {callback_op, op_data}; UNUSED(clss); diff --git a/java/src/jni/h5eImp.h b/java/src/jni/h5eImp.h index 051b2ed..95e43fa 100644 --- a/java/src/jni/h5eImp.h +++ b/java/src/jni/h5eImp.h @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -14,169 +13,135 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5E */ -#ifndef _Included_hdf_hdf5lib_H5_H5E -#define _Included_hdf_hdf5lib_H5_H5E +#ifndef Included_hdf_hdf5lib_H5_H5E +#define Included_hdf_hdf5lib_H5_H5E #ifdef __cplusplus extern "C" { #endif /* __cplusplus */ - /* * Class: hdf_hdf5lib_H5 * Method: H5Eauto_is_v2 * Signature: (J)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Eauto_1is_1v2 - (JNIEnv *, jclass, jlong); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Eauto_1is_1v2(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Eregister_class * Signature: (Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Eregister_1class - (JNIEnv *, jclass, jstring, jstring, jstring); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Eregister_1class(JNIEnv *, jclass, jstring, jstring, jstring); /* * Class: hdf_hdf5lib_H5 * Method: H5Eunregister_class * Signature: (J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Eunregister_1class - (JNIEnv *, jclass, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Eunregister_1class(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Eclose_msg * Signature: (J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Eclose_1msg - (JNIEnv *, jclass, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Eclose_1msg(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Ecreate_msg * Signature: (JILjava/lang/String;)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Ecreate_1msg - (JNIEnv *, jclass, jlong, jint, jstring); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Ecreate_1msg(JNIEnv *, jclass, jlong, jint, jstring); /* * Class: hdf_hdf5lib_H5 * Method: H5Ecreate_stack * Signature: ()J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Ecreate_1stack - (JNIEnv *, jclass); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Ecreate_1stack(JNIEnv *, jclass); /* * Class: hdf_hdf5lib_H5 * Method: H5Eget_current_stack * Signature: ()J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Eget_1current_1stack - (JNIEnv *, jclass); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Eget_1current_1stack(JNIEnv *, jclass); /* * Class: hdf_hdf5lib_H5 * Method: H5Eclose_stack * Signature: (J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Eclose_1stack - (JNIEnv *, jclass, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Eclose_1stack(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Eprint2 * Signature: (JLjava/lang/Object;)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Eprint2 - (JNIEnv *, jclass, jlong, jobject); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Eprint2(JNIEnv *, jclass, jlong, jobject); /* * Class: hdf_hdf5lib_H5 * Method: H5Eget_class_name * Signature: (J)Ljava/lang/String; */ -JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Eget_1class_1name - (JNIEnv *, jclass, jlong); +JNIEXPORT jstring JNICALL Java_hdf_hdf5lib_H5_H5Eget_1class_1name(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Eset_current_stack * Signature: (J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Eset_1current_1stack - (JNIEnv *, jclass, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Eset_1current_1stack(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Epop * Signature: (JJ)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Epop - (JNIEnv *, jclass, jlong, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Epop(JNIEnv *, jclass, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Epush2 * Signature: (JLjava/lang/String;Ljava/lang/String;IJJJLjava/lang/String;)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Epush2 - (JNIEnv *, jclass, jlong, jstring, jstring, jint, jlong, jlong, jlong, jstring); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Epush2(JNIEnv *, jclass, jlong, jstring, jstring, jint, jlong, + jlong, jlong, jstring); /* * Class: hdf_hdf5lib_H5 * Method: H5Eclear2 * Signature: (J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Eclear2 - (JNIEnv *, jclass, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Eclear2(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Eget_msg * Signature: (J[I)Ljava/lang/String; */ -JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Eget_1msg - (JNIEnv *, jclass, jlong, jintArray); +JNIEXPORT jstring JNICALL Java_hdf_hdf5lib_H5_H5Eget_1msg(JNIEnv *, jclass, jlong, jintArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Eget_num * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Eget_1num - (JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Eget_1num(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Ewalk2 * Signature: (JJLjava/lang/Object;Ljava/lang/Object;)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Ewalk2 - (JNIEnv *, jclass, jlong, jlong, jobject, jobject); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Ewalk2(JNIEnv *, jclass, jlong, jlong, jobject, jobject); #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5E */ +#endif /* Included_hdf_hdf5lib_H5_H5E */ diff --git a/java/src/jni/h5fImp.c b/java/src/jni/h5fImp.c index 4fd6807..e59a69e 100644 --- a/java/src/jni/h5fImp.c +++ b/java/src/jni/h5fImp.c @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -39,11 +39,10 @@ extern "C" { * Signature: (Ljava/lang/String;IJ)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Fopen - (JNIEnv *env, jclass clss, jstring name, jint flags, jlong access_id) +Java_hdf_hdf5lib_H5__1H5Fopen(JNIEnv *env, jclass clss, jstring name, jint flags, jlong access_id) { const char *fileName = NULL; - hid_t status = H5I_INVALID_HID; + hid_t status = H5I_INVALID_HID; UNUSED(clss); @@ -68,11 +67,11 @@ done: * Signature: (Ljava/lang/String;IJJ)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Fcreate - (JNIEnv *env, jclass clss, jstring name, jint flags, jlong create_id, jlong access_id) +Java_hdf_hdf5lib_H5__1H5Fcreate(JNIEnv *env, jclass clss, jstring name, jint flags, jlong create_id, + jlong access_id) { const char *fileName = NULL; - hid_t status = H5I_INVALID_HID; + hid_t status = H5I_INVALID_HID; UNUSED(clss); @@ -97,8 +96,7 @@ done: * Signature: (JI)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Fflush - (JNIEnv *env, jclass clss, jlong object_id, jint scope) +Java_hdf_hdf5lib_H5_H5Fflush(JNIEnv *env, jclass clss, jlong object_id, jint scope) { herr_t retVal = FAIL; @@ -117,12 +115,11 @@ done: * Signature: (J)Ljava/lang/String; */ JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1name - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5_H5Fget_1name(JNIEnv *env, jclass clss, jlong file_id) { - jstring str = NULL; - ssize_t buf_size; - char *namePtr = NULL; + jstring str = NULL; + ssize_t buf_size; + char * namePtr = NULL; UNUSED(clss); @@ -130,8 +127,8 @@ Java_hdf_hdf5lib_H5_H5Fget_1name if ((buf_size = H5Fget_name((hid_t)file_id, NULL, 0)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (NULL == (namePtr = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Fget_name: malloc failed"); + if (NULL == (namePtr = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Fget_name: malloc failed"); if ((H5Fget_name((hid_t)file_id, namePtr, (size_t)buf_size + 1)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -153,18 +150,19 @@ done: * Signature: (Ljava/lang/String;)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Fis_1hdf5 - (JNIEnv *env, jclass clss, jstring name) +Java_hdf_hdf5lib_H5_H5Fis_1hdf5(JNIEnv *env, jclass clss, jstring name) { +#ifndef H5_NO_DEPRECATED_SYMBOLS const char *fileName = NULL; - htri_t bval = JNI_FALSE; +#endif + htri_t bval = JNI_FALSE; UNUSED(clss); #ifdef H5_NO_DEPRECATED_SYMBOLS + UNUSED(name); H5_UNIMPLEMENTED(ENVONLY, "H5Fis_hdf5: not implemented"); -#endif - +#else if (NULL == name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Fis_hdf5: file name is NULL"); @@ -174,10 +172,13 @@ Java_hdf_hdf5lib_H5_H5Fis_1hdf5 H5_LIBRARY_ERROR(ENVONLY); bval = (bval > 0) ? JNI_TRUE : JNI_FALSE; +#endif done: +#ifndef H5_NO_DEPRECATED_SYMBOLS if (fileName) UNPIN_JAVA_STRING(ENVONLY, name, fileName); +#endif return (jboolean)bval; } /* end Java_hdf_hdf5lib_H5_H5Fis_1hdf5 */ @@ -188,11 +189,10 @@ done: * Signature: (Ljava/lang/String;J)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Fis_1accessible - (JNIEnv *env, jclass clss, jstring name, jlong file_id) +Java_hdf_hdf5lib_H5_H5Fis_1accessible(JNIEnv *env, jclass clss, jstring name, jlong file_id) { const char *fileName = NULL; - htri_t bval = JNI_FALSE; + htri_t bval = JNI_FALSE; UNUSED(clss); @@ -219,8 +219,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Fget_1create_1plist - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5__1H5Fget_1create_1plist(JNIEnv *env, jclass clss, jlong file_id) { hid_t retVal = H5I_INVALID_HID; @@ -239,8 +238,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Fget_1access_1plist - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5__1H5Fget_1access_1plist(JNIEnv *env, jclass clss, jlong file_id) { hid_t retVal = H5I_INVALID_HID; @@ -259,8 +257,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1intent - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5_H5Fget_1intent(JNIEnv *env, jclass clss, jlong file_id) { unsigned intent = 0; @@ -279,8 +276,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1fileno - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5_H5Fget_1fileno(JNIEnv *env, jclass clss, jlong file_id) { unsigned long fileno = 0; @@ -299,8 +295,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5__1H5Fclose - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5__1H5Fclose(JNIEnv *env, jclass clss, jlong file_id) { herr_t status = FAIL; @@ -319,11 +314,11 @@ done: * Signature: (JLjava/lang/String;JJ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Fmount - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong child_id, jlong plist_id) +Java_hdf_hdf5lib_H5_H5Fmount(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong child_id, + jlong plist_id) { const char *fileName = NULL; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -348,11 +343,10 @@ done: * Signature: (JLjava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Funmount - (JNIEnv *env, jclass clss, jlong loc_id, jstring name) +Java_hdf_hdf5lib_H5_H5Funmount(JNIEnv *env, jclass clss, jlong loc_id, jstring name) { const char *fileName = NULL; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -377,8 +371,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1freespace - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5_H5Fget_1freespace(JNIEnv *env, jclass clss, jlong file_id) { hssize_t ret_val = -1; @@ -397,8 +390,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Freopen - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5__1H5Freopen(JNIEnv *env, jclass clss, jlong file_id) { hid_t retVal = H5I_INVALID_HID; @@ -417,16 +409,15 @@ done: * Signature: (JIJ[J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1obj_1ids - (JNIEnv *env, jclass clss, jlong file_id, jint types, jlong maxObjs, - jlongArray obj_id_list) +Java_hdf_hdf5lib_H5_H5Fget_1obj_1ids(JNIEnv *env, jclass clss, jlong file_id, jint types, jlong maxObjs, + jlongArray obj_id_list) { - jboolean isCopy; - ssize_t ret_val = -1; - size_t i; - jsize rank; - jlong *obj_id_listP = NULL; - hid_t *id_list = NULL; + jboolean isCopy; + ssize_t ret_val = -1; + size_t i; + jsize rank; + jlong * obj_id_listP = NULL; + hid_t * id_list = NULL; UNUSED(clss); @@ -440,8 +431,8 @@ Java_hdf_hdf5lib_H5_H5Fget_1obj_1ids H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Fget_obj_ids: obj_id_list length < 0"); } - if (NULL == (id_list = (hid_t *) HDmalloc((size_t)rank * sizeof(hid_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Fget_obj_ids: malloc failed"); + if (NULL == (id_list = (hid_t *)HDmalloc((size_t)rank * sizeof(hid_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Fget_obj_ids: malloc failed"); if ((ret_val = H5Fget_obj_ids((hid_t)file_id, (unsigned int)types, (size_t)maxObjs, id_list)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -465,8 +456,7 @@ done: * Signature: (JI)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1obj_1count - (JNIEnv *env, jclass clss, jlong file_id, jint types) +Java_hdf_hdf5lib_H5_H5Fget_1obj_1count(JNIEnv *env, jclass clss, jlong file_id, jint types) { ssize_t ret_val = -1; @@ -485,8 +475,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1filesize - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5_H5Fget_1filesize(JNIEnv *env, jclass clss, jlong file_id) { hsize_t size = 0; @@ -496,7 +485,7 @@ Java_hdf_hdf5lib_H5_H5Fget_1filesize H5_LIBRARY_ERROR(ENVONLY); done: - return (jlong) size; + return (jlong)size; } /* end Java_hdf_hdf5lib_H5_H5Fget_1filesize */ /* @@ -505,8 +494,7 @@ done: * Signature: (J)D */ JNIEXPORT jdouble JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1mdc_1hit_1rate - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5_H5Fget_1mdc_1hit_1rate(JNIEnv *env, jclass clss, jlong file_id) { double rate = 0.0; @@ -525,14 +513,13 @@ done: * Signature: (J[J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1mdc_1size - (JNIEnv *env, jclass clss, jlong file_id, jlongArray metadata_cache) +Java_hdf_hdf5lib_H5_H5Fget_1mdc_1size(JNIEnv *env, jclass clss, jlong file_id, jlongArray metadata_cache) { - jboolean isCopy; - size_t max_size = 0, min_clean_size = 0, cur_size = 0; - jlong *metadata_cache_ptr = NULL; - jsize size = 0; - int cur_num_entries = -1; + jboolean isCopy; + size_t max_size = 0, min_clean_size = 0, cur_size = 0; + jlong * metadata_cache_ptr = NULL; + jsize size = 0; + int cur_num_entries = -1; UNUSED(clss); @@ -550,7 +537,8 @@ Java_hdf_hdf5lib_H5_H5Fget_1mdc_1size if (H5Fget_mdc_size((hid_t)file_id, &max_size, &min_clean_size, &cur_size, &cur_num_entries) < 0) H5_LIBRARY_ERROR(ENVONLY); - PIN_LONG_ARRAY(ENVONLY, metadata_cache, metadata_cache_ptr, &isCopy, "H5Fget_mdc_size: metadata_cache array not pinned"); + PIN_LONG_ARRAY(ENVONLY, metadata_cache, metadata_cache_ptr, &isCopy, + "H5Fget_mdc_size: metadata_cache array not pinned"); metadata_cache_ptr[0] = (jlong)max_size; metadata_cache_ptr[1] = (jlong)min_clean_size; @@ -569,8 +557,7 @@ done: * Signature: (J)Lhdf/hdf5lib/structs/H5F_info2_t; */ JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1info - (JNIEnv *env, jclass clss, jlong obj_id) +Java_hdf_hdf5lib_H5_H5Fget_1info(JNIEnv *env, jclass clss, jlong obj_id) { H5F_info2_t finfo; jobject ihinfobuf; @@ -599,7 +586,8 @@ Java_hdf_hdf5lib_H5_H5Fget_1info args[7].j = (jlong)finfo.sohm.hdr_size; args[8].l = ihinfobuf; - CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5F_info2_t", "(IJJIJJIJLhdf/hdf5lib/structs/H5_ih_info_t;)V", args, ret_obj); + CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5F_info2_t", + "(IJJIJJIJLhdf/hdf5lib/structs/H5_ih_info_t;)V", args, ret_obj); done: return ret_obj; @@ -611,8 +599,7 @@ done: * Signature: (J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Freset_1mdc_1hit_1rate_1stats - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5_H5Freset_1mdc_1hit_1rate_1stats(JNIEnv *env, jclass clss, jlong file_id) { UNUSED(clss); @@ -629,8 +616,7 @@ done: * Signature: (J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Fclear_1elink_1file_1cache - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5_H5Fclear_1elink_1file_1cache(JNIEnv *env, jclass clss, jlong file_id) { UNUSED(clss); @@ -647,8 +633,7 @@ done: * Signature: (J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Fstart_1swmr_1write - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5_H5Fstart_1swmr_1write(JNIEnv *env, jclass clss, jlong file_id) { UNUSED(clss); @@ -665,8 +650,7 @@ done: * Signature: (J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Fstart_1mdc_1logging - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5_H5Fstart_1mdc_1logging(JNIEnv *env, jclass clss, jlong file_id) { UNUSED(clss); @@ -683,8 +667,7 @@ done: * Signature: (J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Fstop_1mdc_1logging - (JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5_H5Fstop_1mdc_1logging(JNIEnv *env, jclass clss, jlong file_id) { UNUSED(clss); @@ -701,14 +684,14 @@ done: * Signature: (J[Z)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1mdc_1logging_1status - (JNIEnv *env, jclass clss, jlong file_id, jbooleanArray mdc_logging_status) +Java_hdf_hdf5lib_H5_H5Fget_1mdc_1logging_1status(JNIEnv *env, jclass clss, jlong file_id, + jbooleanArray mdc_logging_status) { - jboolean *mdc_logging_status_ptr = NULL; - jboolean isCopy; - hbool_t is_enabled; - hbool_t is_currently_logging; - jsize size; + jboolean *mdc_logging_status_ptr = NULL; + jboolean isCopy; + hbool_t is_enabled; + hbool_t is_currently_logging; + jsize size; UNUSED(clss); @@ -726,7 +709,8 @@ Java_hdf_hdf5lib_H5_H5Fget_1mdc_1logging_1status if (H5Fget_mdc_logging_status((hid_t)file_id, &is_enabled, &is_currently_logging) < 0) H5_LIBRARY_ERROR(ENVONLY); - PIN_BOOL_ARRAY(ENVONLY, mdc_logging_status, mdc_logging_status_ptr, &isCopy, "H5Fget_mdc_logging_status: mdc_logging_status array not pinned"); + PIN_BOOL_ARRAY(ENVONLY, mdc_logging_status, mdc_logging_status_ptr, &isCopy, + "H5Fget_mdc_logging_status: mdc_logging_status array not pinned"); mdc_logging_status_ptr[0] = (jboolean)is_enabled; mdc_logging_status_ptr[1] = (jboolean)is_currently_logging; @@ -744,8 +728,7 @@ done: * Signature: (JZ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Fset_1dset_1no_1attrs_1hint -(JNIEnv *env, jclass clss, jlong file_id, jboolean minimize) +Java_hdf_hdf5lib_H5_H5Fset_1dset_1no_1attrs_1hint(JNIEnv *env, jclass clss, jlong file_id, jboolean minimize) { hbool_t minimize_val; herr_t retVal = FAIL; @@ -767,10 +750,9 @@ done: * Signature: (J)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1dset_1no_1attrs_1hint -(JNIEnv *env, jclass clss, jlong file_id) +Java_hdf_hdf5lib_H5_H5Fget_1dset_1no_1attrs_1hint(JNIEnv *env, jclass clss, jlong file_id) { - jboolean bval = JNI_FALSE; + jboolean bval = JNI_FALSE; hbool_t minimize = FALSE; UNUSED(clss); @@ -779,7 +761,7 @@ Java_hdf_hdf5lib_H5_H5Fget_1dset_1no_1attrs_1hint H5_LIBRARY_ERROR(ENVONLY); if (minimize == TRUE) - bval = JNI_TRUE; + bval = JNI_TRUE; done: return bval; @@ -791,8 +773,7 @@ done: * Signature: (JII)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Fset_1libver_1bounds - (JNIEnv *env, jclass clss, jlong file_id, jint low, jint high) +Java_hdf_hdf5lib_H5_H5Fset_1libver_1bounds(JNIEnv *env, jclass clss, jlong file_id, jint low, jint high) { herr_t retVal = FAIL; @@ -805,7 +786,6 @@ done: return; } /* end Java_hdf_hdf5lib_H5_H5Fset_1libver_1bounds */ - #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ diff --git a/java/src/jni/h5fImp.h b/java/src/jni/h5fImp.h index fc02c76..bf2f199 100644 --- a/java/src/jni/h5fImp.h +++ b/java/src/jni/h5fImp.h @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -14,8 +13,8 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5F */ -#ifndef _Included_hdf_hdf5lib_H5_H5F -#define _Included_hdf_hdf5lib_H5_H5F +#ifndef Included_hdf_hdf5lib_H5_H5F +#define Included_hdf_hdf5lib_H5_H5F #ifdef __cplusplus extern "C" { @@ -26,273 +25,215 @@ extern "C" { * Method: H5Fopen * Signature: (Ljava/lang/String;IJ)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Fopen - (JNIEnv*, jclass, jstring, jint, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Fopen(JNIEnv *, jclass, jstring, jint, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Fcreate * Signature: (Ljava/lang/String;IJJ)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Fcreate - (JNIEnv*, jclass, jstring, jint, jlong, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Fcreate(JNIEnv *, jclass, jstring, jint, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Fflush * Signature: (JI)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Fflush - (JNIEnv*, jclass, jlong, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Fflush(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Fget_name * Signature: (J)Ljava/lang/String; */ -JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1name - (JNIEnv*, jclass, jlong); +JNIEXPORT jstring JNICALL Java_hdf_hdf5lib_H5_H5Fget_1name(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Fis_hdf5 * Signature: (Ljava/lang/String;)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Fis_1hdf5 - (JNIEnv*, jclass, jstring); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Fis_1hdf5(JNIEnv *, jclass, jstring); /* * Class: hdf_hdf5lib_H5 * Method: H5Fis_accessible * Signature: (Ljava/lang/String;J)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Fis_1accessible - (JNIEnv*, jclass, jstring, jlong); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Fis_1accessible(JNIEnv *, jclass, jstring, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Fget_create_plist * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Fget_1create_1plist - (JNIEnv*, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Fget_1create_1plist(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Fget_access_plist * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Fget_1access_1plist - (JNIEnv*, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Fget_1access_1plist(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Fget_intent * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1intent - (JNIEnv*, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Fget_1intent(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Fget_fileno * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1fileno - (JNIEnv*, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Fget_1fileno(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Fclose * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5__1H5Fclose - (JNIEnv*, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5__1H5Fclose(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Fmount * Signature: (JLjava/lang/String;JJ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Fmount - (JNIEnv*, jclass, jlong, jstring, jlong, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Fmount(JNIEnv *, jclass, jlong, jstring, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Funmount * Signature: (JLjava/lang/String;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Funmount - (JNIEnv*, jclass, jlong, jstring); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Funmount(JNIEnv *, jclass, jlong, jstring); /* * Class: hdf_hdf5lib_H5 * Method: H5Fget_freespace * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1freespace - (JNIEnv*, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Fget_1freespace(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Freopen * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Freopen - (JNIEnv*, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Freopen(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Fget_obj_ids * Signature: (JIJ[J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1obj_1ids - (JNIEnv*, jclass, jlong, jint, jlong, jlongArray); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Fget_1obj_1ids(JNIEnv *, jclass, jlong, jint, jlong, + jlongArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Fget_obj_count * Signature: (JI)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1obj_1count - (JNIEnv*, jclass, jlong, jint); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Fget_1obj_1count(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Fget_filesize * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1filesize - (JNIEnv*, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Fget_1filesize(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Fget_mdc_hit_rate * Signature: (J)D */ -JNIEXPORT jdouble JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1mdc_1hit_1rate - (JNIEnv*, jclass, jlong); +JNIEXPORT jdouble JNICALL Java_hdf_hdf5lib_H5_H5Fget_1mdc_1hit_1rate(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Fget_mdc_size * Signature: (J[J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1mdc_1size - (JNIEnv*, jclass, jlong, jlongArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Fget_1mdc_1size(JNIEnv *, jclass, jlong, jlongArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Freset_mdc_hit_rate_stats * Signature: (J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Freset_1mdc_1hit_1rate_1stats - (JNIEnv*, jclass, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Freset_1mdc_1hit_1rate_1stats(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Fget_info * Signature: (J)Lhdf/hdf5lib/structs/H5F_info2_t; */ -JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1info - (JNIEnv*, jclass, jlong); +JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Fget_1info(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Fclear_elink_file_cache * Signature: (J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Fclear_1elink_1file_1cache - (JNIEnv *, jclass, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Fclear_1elink_1file_1cache(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Fstart_swmr_write * Signature: (J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Fstart_1swmr_1write - (JNIEnv *, jclass, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Fstart_1swmr_1write(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Fstart_mdc_logging * Signature: (J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Fstart_1mdc_1logging - (JNIEnv *, jclass, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Fstart_1mdc_1logging(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Fstop_mdc_logging * Signature: (J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Fstop_1mdc_1logging - (JNIEnv *, jclass, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Fstop_1mdc_1logging(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Fget_mdc_logging_status * Signature: (J[Z)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1mdc_1logging_1status - (JNIEnv *, jclass, jlong, jbooleanArray); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Fget_1mdc_1logging_1status(JNIEnv *, jclass, jlong, + jbooleanArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Fset_dset_no_attrs_hint * Signature: (JZ)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Fset_1dset_1no_1attrs_1hint - (JNIEnv *, jclass, jlong, jboolean); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Fset_1dset_1no_1attrs_1hint(JNIEnv *, jclass, jlong, jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Fget_dset_no_attrs_hint * Signature: (J)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Fget_1dset_1no_1attrs_1hint - (JNIEnv *, jclass, jlong); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Fget_1dset_1no_1attrs_1hint(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Fset_libver_bounds * Signature: (JII)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Fset_1libver_1bounds -(JNIEnv *, jclass, jlong, jint, jint); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Fset_1libver_1bounds(JNIEnv *, jclass, jlong, jint, jint); #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5F */ +#endif /* Included_hdf_hdf5lib_H5_H5F */ diff --git a/java/src/jni/h5gImp.c b/java/src/jni/h5gImp.c index 79b1b65..a0011d8 100644 --- a/java/src/jni/h5gImp.c +++ b/java/src/jni/h5gImp.c @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -40,8 +40,7 @@ extern "C" { * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5__1H5Gclose - (JNIEnv *env, jclass clss, jlong group_id) +Java_hdf_hdf5lib_H5__1H5Gclose(JNIEnv *env, jclass clss, jlong group_id) { herr_t retVal = FAIL; @@ -65,8 +64,7 @@ done: * */ jobject -create_H5G_info_t - (JNIEnv *env, H5G_info_t group_info) +create_H5G_info_t(JNIEnv *env, H5G_info_t group_info) { jfieldID fid_storage_type, fid_nlinks, fid_max_corder, fid_mounted; jboolean jmounted; @@ -92,7 +90,7 @@ create_H5G_info_t if (NULL == (fid_mounted = ENVPTR->GetFieldID(ENVONLY, cls, "mounted", "Z"))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - jmounted = (group_info.mounted == 0) ? JNI_FALSE : JNI_TRUE; + jmounted = (group_info.mounted == 0) ? JNI_FALSE : JNI_TRUE; storage_type = (jint)group_info.storage_type; ENVPTR->SetIntField(ENVONLY, obj, fid_storage_type, (jint)storage_type); @@ -117,11 +115,10 @@ done: * Signature: (JLjava/lang/String;JJJ)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Gcreate2 - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, - jlong link_plist_id, jlong create_plist_id, jlong access_plist_id) +Java_hdf_hdf5lib_H5__1H5Gcreate2(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong link_plist_id, + jlong create_plist_id, jlong access_plist_id) { - const char *grpName = NULL; + const char *grpName = NULL; hid_t group_id = H5I_INVALID_HID; UNUSED(clss); @@ -131,7 +128,8 @@ Java_hdf_hdf5lib_H5__1H5Gcreate2 PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Gcreate2: group name not pinned"); - if ((group_id = H5Gcreate2((hid_t)loc_id, grpName, (hid_t)link_plist_id, (hid_t)create_plist_id, (hid_t)access_plist_id)) < 0) + if ((group_id = H5Gcreate2((hid_t)loc_id, grpName, (hid_t)link_plist_id, (hid_t)create_plist_id, + (hid_t)access_plist_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -147,8 +145,7 @@ done: * Signature: (JJJ)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Gcreate_1anon - (JNIEnv *env, jclass clss, jlong loc_id, jlong gcpl_id, jlong gapl_id) +Java_hdf_hdf5lib_H5__1H5Gcreate_1anon(JNIEnv *env, jclass clss, jlong loc_id, jlong gcpl_id, jlong gapl_id) { hid_t group_id = H5I_INVALID_HID; @@ -167,10 +164,9 @@ done: * Signature: (JLjava/lang/String;J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Gopen2 - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_plist_id) +Java_hdf_hdf5lib_H5__1H5Gopen2(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_plist_id) { - const char *grpName = NULL; + const char *grpName = NULL; hid_t group_id = H5I_INVALID_HID; UNUSED(clss); @@ -190,15 +186,13 @@ done: return (jlong)group_id; } /* end Java_hdf_hdf5lib_H5__1H5Gopen2 */ - /* * Class: hdf_hdf5lib_H5 * Method: H5Gget_create_plist * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Gget_1create_1plist - (JNIEnv *env, jclass clss, jlong loc_id) +Java_hdf_hdf5lib_H5_H5Gget_1create_1plist(JNIEnv *env, jclass clss, jlong loc_id) { hid_t plist_id = H5I_INVALID_HID; @@ -217,8 +211,7 @@ done: * Signature: (J)Lhdf/hdf5lib/structs/H5G_info_t; */ JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Gget_1info - (JNIEnv *env, jclass clss, jlong loc_id) +Java_hdf_hdf5lib_H5_H5Gget_1info(JNIEnv *env, jclass clss, jlong loc_id) { H5G_info_t group_info; jobject obj = NULL; @@ -241,12 +234,12 @@ done: * Signature: (JLjava/lang/String;J)Lhdf/hdf5lib/structs/H5G_info_t; */ JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1name - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong lapl_id) +Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1name(JNIEnv *env, jclass clss, jlong loc_id, jstring name, + jlong lapl_id) { H5G_info_t group_info; const char *grpName = NULL; - jobject obj = NULL; + jobject obj = NULL; herr_t ret_val = FAIL; UNUSED(clss); @@ -277,16 +270,15 @@ done: * Signature: (JLjava/lang/String;IIJJ)Lhdf/hdf5lib/structs/H5G_info_t; */ JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1idx - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint index_type, - jint order, jlong n, jlong lapl_id) +Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1idx(JNIEnv *env, jclass clss, jlong loc_id, jstring name, + jint index_type, jint order, jlong n, jlong lapl_id) { - H5_iter_order_t corder = (H5_iter_order_t)order; - H5_index_t cindex_type = (H5_index_t)index_type; - H5G_info_t group_info; - const char *grpName = NULL; - jobject obj = NULL; - herr_t ret_val = FAIL; + H5_iter_order_t corder = (H5_iter_order_t)order; + H5_index_t cindex_type = (H5_index_t)index_type; + H5G_info_t group_info; + const char * grpName = NULL; + jobject obj = NULL; + herr_t ret_val = FAIL; UNUSED(clss); @@ -295,8 +287,8 @@ Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1idx PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Gget_info_by_idx: group name not pinned"); - if ((ret_val = H5Gget_info_by_idx((hid_t)loc_id, grpName, cindex_type, - corder, (hsize_t)n, &group_info, (hid_t)lapl_id)) < 0) + if ((ret_val = H5Gget_info_by_idx((hid_t)loc_id, grpName, cindex_type, corder, (hsize_t)n, &group_info, + (hid_t)lapl_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (NULL == (obj = create_H5G_info_t(env, group_info))) { @@ -317,8 +309,7 @@ done: * Signature: (J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Gflush - (JNIEnv *env, jclass clss, jlong loc_id) +Java_hdf_hdf5lib_H5_H5Gflush(JNIEnv *env, jclass clss, jlong loc_id) { UNUSED(clss); @@ -335,8 +326,7 @@ done: * Signature: (J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Grefresh - (JNIEnv *env, jclass clss, jlong loc_id) +Java_hdf_hdf5lib_H5_H5Grefresh(JNIEnv *env, jclass clss, jlong loc_id) { UNUSED(clss); @@ -347,8 +337,6 @@ done: return; } /* end Java_hdf_hdf5lib_H5_H5Grefresh */ - - #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ diff --git a/java/src/jni/h5gImp.h b/java/src/jni/h5gImp.h index a411658..b7130ed 100644 --- a/java/src/jni/h5gImp.h +++ b/java/src/jni/h5gImp.h @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -14,107 +13,87 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5G */ -#ifndef _Included_hdf_hdf5lib_H5_H5G -#define _Included_hdf_hdf5lib_H5_H5G +#ifndef Included_hdf_hdf5lib_H5_H5G +#define Included_hdf_hdf5lib_H5_H5G #ifdef __cplusplus extern "C" { #endif /* __cplusplus */ - /* * Class: hdf_hdf5lib_H5 * Method: _H5Gclose * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5__1H5Gclose - (JNIEnv*, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5__1H5Gclose(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: _H5Gcreate2 * Signature: (JLjava/lang/String;JJJ)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Gcreate2 - (JNIEnv*, jclass, jlong, jstring, jlong, jlong, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Gcreate2(JNIEnv *, jclass, jlong, jstring, jlong, jlong, + jlong); /* * Class: hdf_hdf5lib_H5 * Method: _H5Gcreate_anon * Signature: (JJJ)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Gcreate_1anon - (JNIEnv*, jclass, jlong, jlong, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Gcreate_1anon(JNIEnv *, jclass, jlong, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: _H5Gopen2 * Signature: (JLjava/lang/String;J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Gopen2 - (JNIEnv*, jclass, jlong, jstring, jlong); - +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Gopen2(JNIEnv *, jclass, jlong, jstring, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Gget_create_plist * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Gget_1create_1plist -(JNIEnv*, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Gget_1create_1plist(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Gget_info * Signature: (J)Lhdf/hdf5lib/structs/H5G_info_t; */ -JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Gget_1info - (JNIEnv*, jclass, jlong); +JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Gget_1info(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Gget_info_by_name * Signature: (JLjava/lang/String;J)Lhdf/hdf5lib/structs/H5G_info_t; */ -JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1name - (JNIEnv*, jclass, jlong, jstring, jlong); +JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1name(JNIEnv *, jclass, jlong, jstring, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Gget_info_by_idx * Signature: (JLjava/lang/String;IIJJ)Lhdf/hdf5lib/structs/H5G_info_t; */ -JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1idx - (JNIEnv*, jclass, jlong, jstring, jint, jint, jlong, jlong); +JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Gget_1info_1by_1idx(JNIEnv *, jclass, jlong, jstring, jint, + jint, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Gflush * Signature: (J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Gflush - (JNIEnv*, jclass, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Gflush(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Grefresh * Signature: (J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Grefresh - (JNIEnv*, jclass, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Grefresh(JNIEnv *, jclass, jlong); #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5G */ +#endif /* Included_hdf_hdf5lib_H5_H5G */ diff --git a/java/src/jni/h5iImp.c b/java/src/jni/h5iImp.c index a367802..1e7821a 100644 --- a/java/src/jni/h5iImp.c +++ b/java/src/jni/h5iImp.c @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -38,8 +38,7 @@ extern "C" { * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Iget_1type - (JNIEnv *env, jclass clss, jlong obj_id) +Java_hdf_hdf5lib_H5_H5Iget_1type(JNIEnv *env, jclass clss, jlong obj_id) { H5I_type_t retVal = H5I_BADID; @@ -58,20 +57,20 @@ done: * Signature: (JLjava/lang/String;J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Iget_1name_1long - (JNIEnv *env, jclass clss, jlong obj_id, jobjectArray name, jlong buf_size) +Java_hdf_hdf5lib_H5_H5Iget_1name_1long(JNIEnv *env, jclass clss, jlong obj_id, jobjectArray name, + jlong buf_size) { - ssize_t size = -1; - jstring str; - char *aName = NULL; + ssize_t size = -1; + jstring str; + char * aName = NULL; UNUSED(clss); if (buf_size < 0) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Iget_name_long: buf_size < 0"); - if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Iget_name_long: malloc failed"); + if (NULL == (aName = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Iget_name_long: malloc failed"); if ((size = H5Iget_name((hid_t)obj_id, aName, (size_t)buf_size + 1)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -90,19 +89,17 @@ done: return (jlong)size; } /* end Java_hdf_hdf5lib_H5_H5Iget_1name */ - /* * Class: hdf_hdf5lib_H5 * Method: H5Iget_name * Signature: (J)Ljava/lang/String; */ JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Iget_1name - (JNIEnv *env, jclass clss, jlong obj_id) +Java_hdf_hdf5lib_H5_H5Iget_1name(JNIEnv *env, jclass clss, jlong obj_id) { - jstring str = NULL; - ssize_t buf_size = -1; - char *aName = NULL; + jstring str = NULL; + ssize_t buf_size = -1; + char * aName = NULL; UNUSED(clss); @@ -110,8 +107,8 @@ Java_hdf_hdf5lib_H5_H5Iget_1name if ((buf_size = H5Iget_name((hid_t)obj_id, NULL, 0)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Iget_name: malloc failed"); + if (NULL == (aName = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Iget_name: malloc failed"); if (H5Iget_name((hid_t)obj_id, aName, (size_t)buf_size + 1) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -133,8 +130,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Iget_1ref - (JNIEnv *env, jclass clss, jlong obj_id) +Java_hdf_hdf5lib_H5_H5Iget_1ref(JNIEnv *env, jclass clss, jlong obj_id) { int retVal = FAIL; @@ -153,8 +149,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Iinc_1ref - (JNIEnv *env, jclass clss, jlong obj_id) +Java_hdf_hdf5lib_H5_H5Iinc_1ref(JNIEnv *env, jclass clss, jlong obj_id) { int retVal = FAIL; @@ -173,8 +168,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Idec_1ref - (JNIEnv *env, jclass clss, jlong obj_id) +Java_hdf_hdf5lib_H5_H5Idec_1ref(JNIEnv *env, jclass clss, jlong obj_id) { int retVal = FAIL; @@ -194,8 +188,7 @@ done: */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Iget_1file_1id - (JNIEnv *env, jclass clss, jlong obj_id) +Java_hdf_hdf5lib_H5_H5Iget_1file_1id(JNIEnv *env, jclass clss, jlong obj_id) { hid_t file_id = H5I_INVALID_HID; @@ -205,7 +198,7 @@ Java_hdf_hdf5lib_H5_H5Iget_1file_1id H5_LIBRARY_ERROR(ENVONLY); done: - return (jlong) file_id; + return (jlong)file_id; } /* end Java_hdf_hdf5lib_H5_H5Iget_1file_1id */ /* @@ -214,8 +207,7 @@ done: * Signature: (I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Iget_1type_1ref - (JNIEnv *env, jclass clss, jint type) +Java_hdf_hdf5lib_H5_H5Iget_1type_1ref(JNIEnv *env, jclass clss, jint type) { int retVal = FAIL; @@ -234,8 +226,7 @@ done: * Signature: (I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Idec_1type_1ref - (JNIEnv *env, jclass clss, jint type) +Java_hdf_hdf5lib_H5_H5Idec_1type_1ref(JNIEnv *env, jclass clss, jint type) { int retVal = FAIL; @@ -254,8 +245,7 @@ done: * Signature: (I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Iinc_1type_1ref - (JNIEnv *env, jclass clss, jint type) +Java_hdf_hdf5lib_H5_H5Iinc_1type_1ref(JNIEnv *env, jclass clss, jint type) { int retVal = FAIL; @@ -274,8 +264,7 @@ done: * Signature: (I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Inmembers - (JNIEnv *env, jclass clss, jint type) +Java_hdf_hdf5lib_H5_H5Inmembers(JNIEnv *env, jclass clss, jint type) { hsize_t num_members = 0; @@ -294,8 +283,7 @@ done: * Signature: (J)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Iis_1valid - (JNIEnv *env, jclass clss, jlong obj_id) +Java_hdf_hdf5lib_H5_H5Iis_1valid(JNIEnv *env, jclass clss, jlong obj_id) { htri_t bval = JNI_FALSE; @@ -315,8 +303,7 @@ done: * Signature: (I)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Itype_1exists - (JNIEnv *env, jclass clss, jint type) +Java_hdf_hdf5lib_H5_H5Itype_1exists(JNIEnv *env, jclass clss, jint type) { htri_t bval = JNI_FALSE; @@ -337,8 +324,7 @@ done: * Signature: (IZ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Iclear_1type - (JNIEnv *env, jclass clss, jint type, jboolean force) +Java_hdf_hdf5lib_H5_H5Iclear_1type(JNIEnv *env, jclass clss, jint type, jboolean force) { UNUSED(clss); @@ -355,8 +341,7 @@ done: * Signature: (I)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Idestroy_1type - (JNIEnv *env, jclass clss, jint type) +Java_hdf_hdf5lib_H5_H5Idestroy_1type(JNIEnv *env, jclass clss, jint type) { UNUSED(clss); diff --git a/java/src/jni/h5iImp.h b/java/src/jni/h5iImp.h index 2c854e6..08d5fa1 100644 --- a/java/src/jni/h5iImp.h +++ b/java/src/jni/h5iImp.h @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -14,8 +13,8 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5I */ -#ifndef _Included_hdf_hdf5lib_H5_H5I -#define _Included_hdf_hdf5lib_H5_H5I +#ifndef Included_hdf_hdf5lib_H5_H5I +#define Included_hdf_hdf5lib_H5_H5I #ifdef __cplusplus extern "C" { @@ -26,54 +25,42 @@ extern "C" { * Method: H5Iget_type * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Iget_1type - (JNIEnv*, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Iget_1type(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Iget_name_long * Signature: (JLjava/lang/String;J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Iget_1name_1long - (JNIEnv*, jclass, jlong, jobjectArray, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Iget_1name_1long(JNIEnv *, jclass, jlong, jobjectArray, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Iget_name * Signature: (J)Ljava/lang/String; */ -JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Iget_1name - (JNIEnv*, jclass, jlong); +JNIEXPORT jstring JNICALL Java_hdf_hdf5lib_H5_H5Iget_1name(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Iget_ref * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Iget_1ref - (JNIEnv*, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Iget_1ref(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Iinc_ref * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Iinc_1ref - (JNIEnv*, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Iinc_1ref(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Idec_1ref * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Idec_1ref - (JNIEnv*, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Idec_1ref(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 @@ -81,84 +68,66 @@ Java_hdf_hdf5lib_H5_H5Idec_1ref * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Iget_1file_1id - (JNIEnv*, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Iget_1file_1id(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Iget_type_ref * Signature: (I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Iget_1type_1ref - (JNIEnv*, jclass, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Iget_1type_1ref(JNIEnv *, jclass, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Idec_type_ref * Signature: (I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Idec_1type_1ref - (JNIEnv*, jclass, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Idec_1type_1ref(JNIEnv *, jclass, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Iinc_type_ref * Signature: (I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Iinc_1type_1ref - (JNIEnv*, jclass, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Iinc_1type_1ref(JNIEnv *, jclass, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Inmembers * Signature: (I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Inmembers - (JNIEnv*, jclass, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Inmembers(JNIEnv *, jclass, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Iis_valid * Signature: (J)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Iis_1valid - (JNIEnv*, jclass, jlong); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Iis_1valid(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Itype_exists * Signature: (I)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Itype_1exists - (JNIEnv*, jclass, jint); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Itype_1exists(JNIEnv *, jclass, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Iclear_type * Signature: (IZ)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Iclear_1type - (JNIEnv*, jclass, jint, jboolean); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Iclear_1type(JNIEnv *, jclass, jint, jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Idestroy_type * Signature: (I)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Idestroy_1type - (JNIEnv*, jclass, jint); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Idestroy_1type(JNIEnv *, jclass, jint); #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5I */ +#endif /* Included_hdf_hdf5lib_H5_H5I */ diff --git a/java/src/jni/h5jni.h b/java/src/jni/h5jni.h index 4a94180..2c93846 100644 --- a/java/src/jni/h5jni.h +++ b/java/src/jni/h5jni.h @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -22,219 +21,30 @@ #include <string.h> #include "H5private.h" -#ifndef _Included_h5jni -#define _Included_h5jni +#ifndef Included_h5jni +#define Included_h5jni #ifdef __cplusplus - #define ENVPTR (env) - #define ENVONLY - #define CBENVPTR (cbenv) - #define CBENVONLY - #define JVMPTR (jvm) - #define JVMPAR +#define ENVPTR (env) +#define ENVONLY +#define CBENVPTR (cbenv) +#define CBENVONLY +#define JVMPTR (jvm) +#define JVMPAR #else /* __cplusplus */ - #define ENVPTR (*env) - #define ENVONLY env - #define CBENVPTR (*cbenv) - #define CBENVONLY cbenv - #define JVMPTR (*jvm) - #define JVMPAR jvm +#define ENVPTR (*env) +#define ENVONLY env +#define CBENVPTR (*cbenv) +#define CBENVONLY cbenv +#define JVMPTR (*jvm) +#define JVMPAR jvm #endif /* __cplusplus */ /* * Used to silence compiler when a particular * function parameter is not used. */ -#define UNUSED(o) (void) o - -/* Macros for class access */ -/* Calling code must define ret_obj as jobject */ -#define CALL_CONSTRUCTOR(env, classname, classsig, args, ret_obj) \ -{ \ - jmethodID constructor; \ - jclass cls; \ - \ - if (NULL == (cls = ENVPTR->FindClass(env, (classname)))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, "JNI error: GetObjectClass"); \ - } \ - if (NULL == (constructor = ENVPTR->GetMethodID(ENVONLY, cls, "<init>", (classsig)))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, "JNI error: GetMethodID failed"); \ - } \ - if (NULL == (ret_obj = ENVPTR->NewObjectA(ENVONLY, cls, constructor, (args)))) { \ - CHECK_JNI_EXCEPTION(env, JNI_FALSE); \ - } \ -} - -/* - * Macros for pinning/unpinning objects. - */ -#define PIN_BYTE_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \ -{ \ - if (NULL == (outBuf = ENVPTR->GetByteArrayElements(env, arrayToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define PIN_BYTE_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \ -{ \ - if (NULL == (outBuf = (jbyte *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define UNPIN_BYTE_ARRAY(env, pinnedArray, bufToRelease, freeMode) \ -{ \ - ENVPTR->ReleaseByteArrayElements(env, pinnedArray, (jbyte *) bufToRelease, freeMode); \ -} - -#define PIN_SHORT_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \ -{ \ - if (NULL == (outBuf = ENVPTR->GetShortArrayElements(env, arrayToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define PIN_SHORT_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \ -{ \ - if (NULL == (outBuf = (jshort *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define UNPIN_SHORT_ARRAY(env, pinnedArray, bufToRelease, freeMode) \ -{ \ - ENVPTR->ReleaseShortArrayElements(env, pinnedArray, (jshort *) bufToRelease, freeMode); \ -} - -#define PIN_INT_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \ -{ \ - if (NULL == (outBuf = ENVPTR->GetIntArrayElements(env, arrayToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define PIN_INT_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \ -{ \ - if (NULL == (outBuf = (jint *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define UNPIN_INT_ARRAY(env, pinnedArray, bufToRelease, freeMode) \ -{ \ - ENVPTR->ReleaseIntArrayElements(env, pinnedArray, (jint *) bufToRelease, freeMode); \ -} - -#define PIN_LONG_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \ -{ \ - if (NULL == (outBuf = ENVPTR->GetLongArrayElements(env, arrayToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define PIN_LONG_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \ -{ \ - if (NULL == (outBuf = (jlong *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define UNPIN_LONG_ARRAY(env, pinnedArray, bufToRelease, freeMode) \ -{ \ - ENVPTR->ReleaseLongArrayElements(env, pinnedArray, (jlong *) bufToRelease, freeMode); \ -} - -#define PIN_FLOAT_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \ -{ \ - if (NULL == (outBuf = ENVPTR->GetFloatArrayElements(env, arrayToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define PIN_FLOAT_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \ -{ \ - if (NULL == (outBuf = (jfloat *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define UNPIN_FLOAT_ARRAY(env, pinnedArray, bufToRelease, freeMode) \ -{ \ - ENVPTR->ReleaseFloatArrayElements(env, pinnedArray, (jfloat *) bufToRelease, freeMode); \ -} - -#define PIN_DOUBLE_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \ -{ \ - if (NULL == (outBuf = ENVPTR->GetDoubleArrayElements(env, arrayToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define PIN_DOUBLE_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \ -{ \ - if (NULL == (outBuf = (jdouble *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define UNPIN_DOUBLE_ARRAY(env, pinnedArray, bufToRelease, freeMode) \ -{ \ - ENVPTR->ReleaseDoubleArrayElements(env, pinnedArray, (jdouble *) bufToRelease, freeMode); \ -} - -#define PIN_BOOL_ARRAY(env, arrayToPin, outBuf, isCopy, failErrMsg) \ -{ \ - if (NULL == (outBuf = ENVPTR->GetBooleanArrayElements(env, arrayToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define PIN_BOOL_ARRAY_CRITICAL(env, arrayToPin, outBuf, isCopy, failErrMsg) \ -{ \ - if (NULL == (outBuf = (jboolean *) ENVPTR->GetPrimitiveArrayCritical(env, arrayToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define UNPIN_BOOL_ARRAY(env, pinnedArray, bufToRelease, freeMode) \ -{ \ - ENVPTR->ReleaseBooleanArrayElements(env, pinnedArray, (jboolean *) bufToRelease, freeMode); \ -} - -#define UNPIN_ARRAY_CRITICAL(env, pinnedArray, bufToRelease, freeMode) \ -{ \ - ENVPTR->ReleasePrimitiveArrayCritical(env, pinnedArray, bufToRelease, freeMode); \ -} - -/* Macros for string access */ -#define PIN_JAVA_STRING(env, stringToPin, outString, isCopy, failErrMsg) \ -{ \ - if (NULL == (outString = ENVPTR->GetStringUTFChars(env, stringToPin, isCopy))) { \ - CHECK_JNI_EXCEPTION(env, JNI_TRUE); \ - H5_JNI_FATAL_ERROR(env, failErrMsg); \ - } \ -} - -#define UNPIN_JAVA_STRING(env, pinnedString, stringToRelease) \ -{ \ - ENVPTR->ReleaseStringUTFChars(env, pinnedString, stringToRelease); \ -} +#define UNUSED(o) (void)o /* * Macro to check for a JNI exception after a JNI method is called. @@ -246,15 +56,207 @@ * cleanup+return section of the native method, since at that point * cleaning up and returning is the only safe thing that can be done. */ -#define CHECK_JNI_EXCEPTION(env, clearException) \ -{ \ - if (JNI_TRUE == (*env)->ExceptionCheck(env)) { \ - if (JNI_TRUE == clearException) \ - (*env)->ExceptionClear(env); \ - else \ - goto done; \ - } \ -} +#define CHECK_JNI_EXCEPTION(envptr, clearException) \ + do { \ + if (JNI_TRUE == (*envptr)->ExceptionCheck(envptr)) { \ + if (JNI_TRUE == clearException) \ + (*envptr)->ExceptionClear(envptr); \ + else \ + goto done; \ + } \ + } while (0) + +/* Macros for class access */ +/* Calling code must define ret_obj as jobject */ +#define CALL_CONSTRUCTOR(envptr, classname, classsig, args, ret_obj) \ + do { \ + jmethodID constructor; \ + jclass cls; \ + \ + if (NULL == (cls = (*envptr)->FindClass(envptr, (classname)))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, "JNI error: GetObjectClass"); \ + } \ + if (NULL == (constructor = (*envptr)->GetMethodID(envptr, cls, "<init>", (classsig)))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, "JNI error: GetMethodID failed"); \ + } \ + if (NULL == (ret_obj = (*envptr)->NewObjectA(envptr, cls, constructor, (args)))) { \ + HDprintf("FATAL ERROR: %s: Creation failed\n", classname); \ + CHECK_JNI_EXCEPTION(envptr, JNI_FALSE); \ + } \ + } while (0) + +/* + * Macros for pinning/unpinning objects. + */ +#define PIN_BYTE_ARRAY(envptr, arrayToPin, outBuf, isCopy, failErrMsg) \ + do { \ + if (NULL == (outBuf = (*envptr)->GetByteArrayElements(envptr, arrayToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ + } while (0) + +#define PIN_BYTE_ARRAY_CRITICAL(envptr, arrayToPin, outBuf, isCopy, failErrMsg) \ + do { \ + if (NULL == (outBuf = (jbyte *)(*envptr)->GetPrimitiveArrayCritical(envptr, arrayToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ + } while (0) + +#define UNPIN_BYTE_ARRAY(envptr, pinnedArray, bufToRelease, freeMode) \ + do { \ + (*envptr)->ReleaseByteArrayElements(envptr, pinnedArray, (jbyte *)bufToRelease, freeMode); \ + } while (0) + +#define PIN_SHORT_ARRAY(envptr, arrayToPin, outBuf, isCopy, failErrMsg) \ + do { \ + if (NULL == (outBuf = (*envptr)->GetShortArrayElements(envptr, arrayToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ + } while (0) + +#define PIN_SHORT_ARRAY_CRITICAL(envptr, arrayToPin, outBuf, isCopy, failErrMsg) \ + do { \ + if (NULL == (outBuf = (jshort *)(*envptr)->GetPrimitiveArrayCritical(envptr, arrayToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ + } while (0) + +#define UNPIN_SHORT_ARRAY(envptr, pinnedArray, bufToRelease, freeMode) \ + do { \ + (*envptr)->ReleaseShortArrayElements(envptr, pinnedArray, (jshort *)bufToRelease, freeMode); \ + } while (0) + +#define PIN_INT_ARRAY(envptr, arrayToPin, outBuf, isCopy, failErrMsg) \ + do { \ + if (NULL == (outBuf = (*envptr)->GetIntArrayElements(envptr, arrayToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ + } while (0) + +#define PIN_INT_ARRAY_CRITICAL(envptr, arrayToPin, outBuf, isCopy, failErrMsg) \ + do { \ + if (NULL == (outBuf = (jint *)(*envptr)->GetPrimitiveArrayCritical(envptr, arrayToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ + } while (0) + +#define UNPIN_INT_ARRAY(envptr, pinnedArray, bufToRelease, freeMode) \ + do { \ + (*envptr)->ReleaseIntArrayElements(envptr, pinnedArray, (jint *)bufToRelease, freeMode); \ + } while (0) + +#define PIN_LONG_ARRAY(envptr, arrayToPin, outBuf, isCopy, failErrMsg) \ + do { \ + if (NULL == (outBuf = (*envptr)->GetLongArrayElements(envptr, arrayToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ + } while (0) + +#define PIN_LONG_ARRAY_CRITICAL(envptr, arrayToPin, outBuf, isCopy, failErrMsg) \ + do { \ + if (NULL == (outBuf = (jlong *)(*envptr)->GetPrimitiveArrayCritical(envptr, arrayToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ + } while (0) + +#define UNPIN_LONG_ARRAY(envptr, pinnedArray, bufToRelease, freeMode) \ + do { \ + (*envptr)->ReleaseLongArrayElements(envptr, pinnedArray, (jlong *)bufToRelease, freeMode); \ + } while (0) + +#define PIN_FLOAT_ARRAY(envptr, arrayToPin, outBuf, isCopy, failErrMsg) \ + do { \ + if (NULL == (outBuf = (*envptr)->GetFloatArrayElements(envptr, arrayToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ + } while (0) + +#define PIN_FLOAT_ARRAY_CRITICAL(envptr, arrayToPin, outBuf, isCopy, failErrMsg) \ + do { \ + if (NULL == (outBuf = (jfloat *)(*envptr)->GetPrimitiveArrayCritical(envptr, arrayToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ + } while (0) + +#define UNPIN_FLOAT_ARRAY(envptr, pinnedArray, bufToRelease, freeMode) \ + do { \ + (*envptr)->ReleaseFloatArrayElements(envptr, pinnedArray, (jfloat *)bufToRelease, freeMode); \ + } while (0) + +#define PIN_DOUBLE_ARRAY(envptr, arrayToPin, outBuf, isCopy, failErrMsg) \ + do { \ + if (NULL == (outBuf = (*envptr)->GetDoubleArrayElements(envptr, arrayToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ + } while (0) + +#define PIN_DOUBLE_ARRAY_CRITICAL(envptr, arrayToPin, outBuf, isCopy, failErrMsg) \ + do { \ + if (NULL == \ + (outBuf = (jdouble *)(*envptr)->GetPrimitiveArrayCritical(envptr, arrayToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ + } while (0) + +#define UNPIN_DOUBLE_ARRAY(envptr, pinnedArray, bufToRelease, freeMode) \ + do { \ + (*envptr)->ReleaseDoubleArrayElements(envptr, pinnedArray, (jdouble *)bufToRelease, freeMode); \ + } while (0) + +#define PIN_BOOL_ARRAY(envptr, arrayToPin, outBuf, isCopy, failErrMsg) \ + do { \ + if (NULL == (outBuf = (*envptr)->GetBooleanArrayElements(envptr, arrayToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ + } while (0) + +#define PIN_BOOL_ARRAY_CRITICAL(envptr, arrayToPin, outBuf, isCopy, failErrMsg) \ + do { \ + if (NULL == \ + (outBuf = (jboolean *)(*envptr)->GetPrimitiveArrayCritical(envptr, arrayToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ + } while (0) + +#define UNPIN_BOOL_ARRAY(envptr, pinnedArray, bufToRelease, freeMode) \ + do { \ + (*envptr)->ReleaseBooleanArrayElements(envptr, pinnedArray, (jboolean *)bufToRelease, freeMode); \ + } while (0) + +#define UNPIN_ARRAY_CRITICAL(envptr, pinnedArray, bufToRelease, freeMode) \ + do { \ + (*envptr)->ReleasePrimitiveArrayCritical(envptr, pinnedArray, bufToRelease, freeMode); \ + } while (0) + +/* Macros for string access */ +#define PIN_JAVA_STRING(envptr, stringToPin, outString, isCopy, failErrMsg) \ + do { \ + if (NULL == (outString = (*envptr)->GetStringUTFChars(envptr, stringToPin, isCopy))) { \ + CHECK_JNI_EXCEPTION(envptr, JNI_TRUE); \ + H5_JNI_FATAL_ERROR(envptr, failErrMsg); \ + } \ + } while (0) + +#define UNPIN_JAVA_STRING(envptr, pinnedString, stringToRelease) \ + do { \ + (*envptr)->ReleaseStringUTFChars(envptr, pinnedString, stringToRelease); \ + } while (0) #ifdef __cplusplus extern "C" { @@ -264,9 +266,10 @@ extern jboolean h5JNIFatalError(JNIEnv *env, const char *); extern jboolean h5nullArgument(JNIEnv *env, const char *); extern jboolean h5badArgument(JNIEnv *env, const char *); extern jboolean h5outOfMemory(JNIEnv *env, const char *); +extern jboolean h5assertion(JNIEnv *env, const char *); +extern jboolean h5unimplemented(JNIEnv *env, const char *); extern jboolean h5libraryError(JNIEnv *env); extern jboolean h5raiseException(JNIEnv *env, const char *, const char *); -extern jboolean h5unimplemented( JNIEnv *env, const char *functName); /* * The following macros are to facilitate immediate cleanup+return @@ -278,58 +281,67 @@ extern jboolean h5unimplemented( JNIEnv *env, const char *functName); * Note that a native method can clear the exception when one occurs and * then do its own error handling, but we instead opt to immediately return. */ -#define H5_JNI_FATAL_ERROR(env, message) \ -{ \ - h5JNIFatalError(env, message); \ - goto done; \ -} - -#define H5_NULL_ARGUMENT_ERROR(env, message) \ -{ \ - h5nullArgument(env, message); \ - goto done; \ -} - -#define H5_BAD_ARGUMENT_ERROR(env, message) \ -{ \ - h5badArgument(env, message); \ - goto done; \ -} - -#define H5_OUT_OF_MEMORY_ERROR(env, message) \ -{ \ - h5outOfMemory(env, message); \ - goto done; \ -} - -#define H5_LIBRARY_ERROR(env) \ -{ \ - h5libraryError(env); \ - goto done; \ -} - -#define H5_RAISE_EXCEPTION(env, message, exception) \ -{ \ - h5raiseException(env, message, exception); \ - goto done; \ -} - -#define H5_UNIMPLEMENTED(env, message) \ -{ \ - h5unimplemented(env, message); \ - goto done; \ -} +#define H5_JNI_FATAL_ERROR(env, message) \ + do { \ + h5JNIFatalError(env, message); \ + goto done; \ + } while (0) + +#define H5_NULL_ARGUMENT_ERROR(env, message) \ + do { \ + h5nullArgument(env, message); \ + goto done; \ + } while (0) + +#define H5_BAD_ARGUMENT_ERROR(env, message) \ + do { \ + h5badArgument(env, message); \ + goto done; \ + } while (0) + +#define H5_OUT_OF_MEMORY_ERROR(env, message) \ + do { \ + h5outOfMemory(env, message); \ + goto done; \ + } while (0) + +#define H5_ASSERTION_ERROR(env, message) \ + do { \ + h5assertion(env, message); \ + goto done; \ + } while (0) + +#define H5_UNIMPLEMENTED(env, message) \ + do { \ + h5unimplemented(env, message); \ + goto done; \ + } while (0) + +#define H5_LIBRARY_ERROR(env) \ + do { \ + h5libraryError(env); \ + goto done; \ + } while (0) + +#define H5_RAISE_EXCEPTION(env, message, exception) \ + do { \ + h5raiseException(env, message, exception); \ + goto done; \ + } while (0) /* implemented at H5.c */ -extern jint get_enum_value(JNIEnv *env, jobject enum_obj); -extern jobject get_enum_object(JNIEnv *env, const char* enum_class_name, - jint enum_val, const char* enum_field_desc); +extern jint get_enum_value(JNIEnv *env, jobject enum_obj); +extern jobject get_enum_object(JNIEnv *env, const char *enum_class_name, jint enum_val, + const char *enum_field_desc); /* implemented at H5G.c */ extern jobject create_H5G_info_t(JNIEnv *env, H5G_info_t group_info); +/* implemented at h5oimp.c */ +extern jobject create_H5O_token_t(JNIEnv *env, const H5O_token_t *token, hbool_t is_critical_pinning); + #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_h5jni */ +#endif /* Included_h5jni */ diff --git a/java/src/jni/h5lImp.c b/java/src/jni/h5lImp.c index 7eee3d4..43db4e9 100644 --- a/java/src/jni/h5lImp.c +++ b/java/src/jni/h5lImp.c @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -41,7 +40,7 @@ typedef struct _cb_wrapper { /* Local Prototypes */ /********************/ -static herr_t H5L_iterate_cb(hid_t g_id, const char *name, const H5L_info_t *info, void *cb_data); +static herr_t H5L_iterate_cb(hid_t g_id, const char *name, const H5L_info2_t *info, void *cb_data); /* * Class: hdf_hdf5lib_H5 @@ -49,13 +48,12 @@ static herr_t H5L_iterate_cb(hid_t g_id, const char *name, const H5L_info_t *inf * Signature: (JLjava/lang/String;JLjava/lang/String;JJ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Lcopy - (JNIEnv *env, jclass clss, jlong cur_loc_id, jstring cur_name, jlong dst_loc_id, - jstring dst_name, jlong create_id, jlong access_id) +Java_hdf_hdf5lib_H5_H5Lcopy(JNIEnv *env, jclass clss, jlong cur_loc_id, jstring cur_name, jlong dst_loc_id, + jstring dst_name, jlong create_id, jlong access_id) { const char *lCurName = NULL; const char *lDstName = NULL; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -67,7 +65,8 @@ Java_hdf_hdf5lib_H5_H5Lcopy PIN_JAVA_STRING(ENVONLY, cur_name, lCurName, NULL, "H5Lcopy: src name not pinned"); PIN_JAVA_STRING(ENVONLY, dst_name, lDstName, NULL, "H5Lcopy: dest name not pinned"); - if ((status = H5Lcopy((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id)) < 0) + if ((status = H5Lcopy((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, + (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -83,14 +82,13 @@ done: * Signature: (Ljava/lang/String;Ljava/lang/String;JLjava/lang/String;JJ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Lcreate_1external - (JNIEnv *env, jclass clss, jstring file_name, jstring cur_name, - jlong dst_loc_id, jstring dst_name, jlong create_id, jlong access_id) +Java_hdf_hdf5lib_H5_H5Lcreate_1external(JNIEnv *env, jclass clss, jstring file_name, jstring cur_name, + jlong dst_loc_id, jstring dst_name, jlong create_id, jlong access_id) { const char *lFileName = NULL; - const char *lCurName = NULL; - const char *lDstName = NULL; - herr_t status = FAIL; + const char *lCurName = NULL; + const char *lDstName = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -105,7 +103,8 @@ Java_hdf_hdf5lib_H5_H5Lcreate_1external PIN_JAVA_STRING(ENVONLY, cur_name, lCurName, NULL, "H5Lcreate_external: object name not pinned"); PIN_JAVA_STRING(ENVONLY, dst_name, lDstName, NULL, "H5Lcreate_external: link name not pinned"); - if ((status = H5Lcreate_external(lFileName, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id)) < 0) + if ((status = H5Lcreate_external(lFileName, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, + (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -123,13 +122,12 @@ done: * Signature: (JLjava/lang/String;JLjava/lang/String;JJ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Lcreate_1hard - (JNIEnv *env, jclass clss, jlong cur_loc_id, jstring cur_name, - jlong dst_loc_id, jstring dst_name, jlong create_id, jlong access_id) +Java_hdf_hdf5lib_H5_H5Lcreate_1hard(JNIEnv *env, jclass clss, jlong cur_loc_id, jstring cur_name, + jlong dst_loc_id, jstring dst_name, jlong create_id, jlong access_id) { const char *lCurName = NULL; const char *lDstName = NULL; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -141,7 +139,8 @@ Java_hdf_hdf5lib_H5_H5Lcreate_1hard PIN_JAVA_STRING(ENVONLY, cur_name, lCurName, NULL, "H5Lcreate_hard: object name not pinned"); PIN_JAVA_STRING(ENVONLY, dst_name, lDstName, NULL, "H5Lcreate_hard: link name not pinned"); - if ((status = H5Lcreate_hard((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id)) < 0) + if ((status = H5Lcreate_hard((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, + (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -157,13 +156,12 @@ done: * Signature: (Ljava/lang/String;JLjava/lang/String;JJ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Lcreate_1soft - (JNIEnv *env, jclass clss, jstring cur_name, jlong dst_loc_id, - jstring dst_name, jlong create_id, jlong access_id) +Java_hdf_hdf5lib_H5_H5Lcreate_1soft(JNIEnv *env, jclass clss, jstring cur_name, jlong dst_loc_id, + jstring dst_name, jlong create_id, jlong access_id) { const char *linkTarget = NULL; - const char *linkName = NULL; - herr_t status = FAIL; + const char *linkName = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -175,7 +173,8 @@ Java_hdf_hdf5lib_H5_H5Lcreate_1soft PIN_JAVA_STRING(ENVONLY, cur_name, linkTarget, NULL, "H5Lcreate_soft: link target not pinned"); PIN_JAVA_STRING(ENVONLY, dst_name, linkName, NULL, "H5Lcreate_soft: link name not pinned"); - if ((status = H5Lcreate_soft(linkTarget, (hid_t)dst_loc_id, linkName, (hid_t)create_id, (hid_t)access_id)) < 0) + if ((status = + H5Lcreate_soft(linkTarget, (hid_t)dst_loc_id, linkName, (hid_t)create_id, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -191,11 +190,10 @@ done: * Signature: (JLjava/lang/String;J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Ldelete - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_id) +Java_hdf_hdf5lib_H5_H5Ldelete(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_id) { const char *linkName = NULL; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -218,13 +216,12 @@ done: * Signature: (JLjava/lang/String;IIJJ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Ldelete_1by_1idx - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, - jint index_field, jint order, jlong link_n, jlong access_id) +Java_hdf_hdf5lib_H5_H5Ldelete_1by_1idx(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint index_field, + jint order, jlong link_n, jlong access_id) { const char *groupName = NULL; - hsize_t n = (hsize_t)link_n; - herr_t status = FAIL; + hsize_t n = (hsize_t)link_n; + herr_t status = FAIL; UNUSED(clss); @@ -233,7 +230,8 @@ Java_hdf_hdf5lib_H5_H5Ldelete_1by_1idx PIN_JAVA_STRING(ENVONLY, name, groupName, NULL, "H5Ldelete_by_idx: group name not pinned"); - if ((status = H5Ldelete_by_idx((hid_t)loc_id, groupName, (H5_index_t)index_field, (H5_iter_order_t)order, n, (hid_t)access_id)) < 0) + if ((status = H5Ldelete_by_idx((hid_t)loc_id, groupName, (H5_index_t)index_field, (H5_iter_order_t)order, + n, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -247,11 +245,10 @@ done: * Signature: (JLjava/lang/String;J)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Lexists - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_id) +Java_hdf_hdf5lib_H5_H5Lexists(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_id) { const char *linkName = NULL; - htri_t bval = JNI_FALSE; + htri_t bval = JNI_FALSE; UNUSED(clss); @@ -278,13 +275,12 @@ done: * Signature: (JLjava/lang/String;J)Lhdf/hdf5lib/structs/H5L_info_t; */ JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Lget_1info - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_id) +Java_hdf_hdf5lib_H5_H5Lget_1info(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_id) { - H5L_info_t infobuf; + H5L_info2_t infobuf; const char *linkName = NULL; jvalue args[5]; - herr_t status = FAIL; + herr_t status = FAIL; jobject ret_obj = NULL; UNUSED(clss); @@ -294,16 +290,39 @@ Java_hdf_hdf5lib_H5_H5Lget_1info PIN_JAVA_STRING(ENVONLY, name, linkName, NULL, "H5Lget_info: link name not pinned"); - if ((status = H5Lget_info((hid_t)loc_id, linkName, &infobuf, (hid_t)access_id)) < 0) + if ((status = H5Lget_info2((hid_t)loc_id, linkName, &infobuf, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); - args[0].i = infobuf.type; - args[1].z = infobuf.corder_valid; - args[2].j = infobuf.corder; - args[3].i = infobuf.cset; - args[4].j = (infobuf.type == H5L_TYPE_HARD) ? (jlong) infobuf.u.address : (jlong) infobuf.u.val_size; + /* + * Set the last argument based upon whether this is a hard link (which returns object tokens) + * or a soft/user-defined link (which returns the link's value size). Then, call the appropriate + * constructor to instantiate an H5L_info_t object. + */ + if (infobuf.type == H5L_TYPE_HARD) { + jobject token; - CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5L_info_t", "(IZJIJ)V", args, ret_obj); + /* Create an H5O_token_t object */ + if (NULL == (token = create_H5O_token_t(ENVONLY, &infobuf.u.token, FALSE))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + args[0].i = infobuf.type; + args[1].z = infobuf.corder_valid; + args[2].j = infobuf.corder; + args[3].i = infobuf.cset; + args[4].l = token; + + CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5L_info_t", + "(IZJILhdf/hdf5lib/structs/H5O_token_t;)V", args, ret_obj); + } + else { + args[0].i = infobuf.type; + args[1].z = infobuf.corder_valid; + args[2].j = infobuf.corder; + args[3].i = infobuf.cset; + args[4].j = (jlong)infobuf.u.val_size; + + CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5L_info_t", "(IZJIJ)V", args, ret_obj); + } done: if (linkName) @@ -318,14 +337,13 @@ done: * Signature: (JLjava/lang/String;IIJJ)Lhdf/hdf5lib/structs/H5L_info_t; */ JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Lget_1info_1by_1idx - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, - jint index_field, jint order, jlong link_n, jlong access_id) +Java_hdf_hdf5lib_H5_H5Lget_1info_1by_1idx(JNIEnv *env, jclass clss, jlong loc_id, jstring name, + jint index_field, jint order, jlong link_n, jlong access_id) { - H5L_info_t infobuf; + H5L_info2_t infobuf; const char *groupName = NULL; jvalue args[5]; - herr_t status = FAIL; + herr_t status = FAIL; jobject ret_obj = NULL; UNUSED(clss); @@ -335,16 +353,41 @@ Java_hdf_hdf5lib_H5_H5Lget_1info_1by_1idx PIN_JAVA_STRING(ENVONLY, name, groupName, NULL, "H5Lget_info_by_idx: group name not pinned"); - if ((status = H5Lget_info_by_idx((hid_t)loc_id, groupName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, &infobuf, (hid_t)access_id)) < 0) + if ((status = H5Lget_info_by_idx2((hid_t)loc_id, groupName, (H5_index_t)index_field, + (H5_iter_order_t)order, (hsize_t)link_n, &infobuf, (hid_t)access_id)) < + 0) H5_LIBRARY_ERROR(ENVONLY); - args[0].i = infobuf.type; - args[1].z = infobuf.corder_valid; - args[2].j = infobuf.corder; - args[3].i = infobuf.cset; - args[4].j = (infobuf.type == H5L_TYPE_HARD) ? (jlong) infobuf.u.address : (jlong) infobuf.u.val_size; + /* + * Set the last argument based upon whether this is a hard link (which returns object tokens) + * or a soft/user-defined link (which returns the link's value size). Then, call the appropriate + * constructor to instantiate an H5L_info_t object. + */ + if (infobuf.type == H5L_TYPE_HARD) { + jobject token; + + /* Create an H5O_token_t object */ + if (NULL == (token = create_H5O_token_t(ENVONLY, &infobuf.u.token, FALSE))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + args[0].i = infobuf.type; + args[1].z = infobuf.corder_valid; + args[2].j = infobuf.corder; + args[3].i = infobuf.cset; + args[4].l = token; - CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5L_info_t", "(IZJIJ)V", args, ret_obj); + CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5L_info_t", + "(IZJILhdf/hdf5lib/structs/H5O_token_t;)V", args, ret_obj); + } + else { + args[0].i = infobuf.type; + args[1].z = infobuf.corder_valid; + args[2].j = infobuf.corder; + args[3].i = infobuf.cset; + args[4].j = (jlong)infobuf.u.val_size; + + CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5L_info_t", "(IZJIJ)V", args, ret_obj); + } done: if (groupName) @@ -359,14 +402,13 @@ done: * Signature: (JLjava/lang/String;IIJJ)Ljava/lang/String; */ JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Lget_1name_1by_1idx - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, - jint index_field, jint order, jlong link_n, jlong access_id) +Java_hdf_hdf5lib_H5_H5Lget_1name_1by_1idx(JNIEnv *env, jclass clss, jlong loc_id, jstring name, + jint index_field, jint order, jlong link_n, jlong access_id) { - const char *groupName = NULL; - jstring str = NULL; + const char *groupName = NULL; + jstring str = NULL; ssize_t status_size = -1; - char *linkName = NULL; + char * linkName = NULL; UNUSED(clss); @@ -376,14 +418,18 @@ Java_hdf_hdf5lib_H5_H5Lget_1name_1by_1idx PIN_JAVA_STRING(ENVONLY, name, groupName, NULL, "H5Lget_name_by_idx: group name not pinned"); /* Get the length of the link name */ - if ((status_size = H5Lget_name_by_idx((hid_t)loc_id, groupName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, (char *)NULL, (size_t)0, H5P_DEFAULT)) < 0) + if ((status_size = + H5Lget_name_by_idx((hid_t)loc_id, groupName, (H5_index_t)index_field, (H5_iter_order_t)order, + (hsize_t)link_n, (char *)NULL, (size_t)0, H5P_DEFAULT)) < 0) H5_LIBRARY_ERROR(ENVONLY); /* add extra space for the null terminator */ - if (NULL == (linkName = (char *) HDmalloc(sizeof(char) * (size_t)status_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Lget_name_by_idx: failed to allocate buffer for link name"); + if (NULL == (linkName = (char *)HDmalloc(sizeof(char) * (size_t)status_size + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Lget_name_by_idx: failed to allocate buffer for link name"); - if ((H5Lget_name_by_idx((hid_t)loc_id, groupName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, (char *)linkName, (size_t)status_size + 1, (hid_t)access_id)) < 0) + if ((H5Lget_name_by_idx((hid_t)loc_id, groupName, (H5_index_t)index_field, (H5_iter_order_t)order, + (hsize_t)link_n, (char *)linkName, (size_t)status_size + 1, (hid_t)access_id)) < + 0) H5_LIBRARY_ERROR(ENVONLY); linkName[status_size] = '\0'; @@ -405,16 +451,16 @@ done: * Signature: (JLjava/lang/String;[Ljava/lang/String;J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Lget_1value - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jobjectArray link_value, jlong access_id) +Java_hdf_hdf5lib_H5_H5Lget_1value(JNIEnv *env, jclass clss, jlong loc_id, jstring name, + jobjectArray link_value, jlong access_id) { - H5L_info_t infobuf; + H5L_info2_t infobuf; const char *file_name = NULL; - const char *obj_name = NULL; - const char *linkName = NULL; + const char *obj_name = NULL; + const char *linkName = NULL; jstring str; herr_t status; - char *linkValue = NULL; + char * linkValue = NULL; UNUSED(clss); @@ -426,22 +472,22 @@ Java_hdf_hdf5lib_H5_H5Lget_1value PIN_JAVA_STRING(ENVONLY, name, linkName, NULL, "H5Lget_value: link name not pinned"); /* Get the length of the link value */ - if ((status = H5Lget_info((hid_t)loc_id, linkName, &infobuf, H5P_DEFAULT)) < 0) + if ((status = H5Lget_info2((hid_t)loc_id, linkName, &infobuf, H5P_DEFAULT)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (H5L_TYPE_HARD == infobuf.type) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Lget_val: hard links are unsupported"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Lget_val: hard links are unsupported"); - if (NULL == (linkValue = (char *) HDmalloc(sizeof(char) * infobuf.u.val_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Lget_val: failed to allocate buffer for link value"); + if (NULL == (linkValue = (char *)HDmalloc(sizeof(char) * infobuf.u.val_size + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Lget_val: failed to allocate buffer for link value"); - if ((status = H5Lget_val((hid_t)loc_id, linkName, (void *)linkValue, infobuf.u.val_size + 1, (hid_t)access_id)) < 0) + if ((status = H5Lget_val((hid_t)loc_id, linkName, (void *)linkValue, infobuf.u.val_size + 1, + (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); linkValue[infobuf.u.val_size] = '\0'; switch (infobuf.type) { - case H5L_TYPE_SOFT: - { + case H5L_TYPE_SOFT: { if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, linkValue))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); @@ -451,9 +497,9 @@ Java_hdf_hdf5lib_H5_H5Lget_1value break; } - case H5L_TYPE_EXTERNAL: - { - if ((status = H5Lunpack_elink_val(linkValue, (size_t)infobuf.u.val_size, (unsigned *)NULL, &file_name, &obj_name)) < 0) + case H5L_TYPE_EXTERNAL: { + if ((status = H5Lunpack_elink_val(linkValue, (size_t)infobuf.u.val_size, (unsigned *)NULL, + &file_name, &obj_name)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, obj_name))) @@ -475,7 +521,7 @@ Java_hdf_hdf5lib_H5_H5Lget_1value case H5L_TYPE_MAX: case H5L_TYPE_HARD: default: - H5_JNI_FATAL_ERROR(ENVONLY, "H5Lget_val: invalid link type"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Lget_val: invalid link type"); break; } @@ -494,17 +540,17 @@ done: * Signature: (JLjava/lang/String;IIJ[Ljava/lang/String;J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Lget_1value_1by_1idx - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint index_field, jint order, - jlong link_n, jobjectArray link_value, jlong access_id) +Java_hdf_hdf5lib_H5_H5Lget_1value_1by_1idx(JNIEnv *env, jclass clss, jlong loc_id, jstring name, + jint index_field, jint order, jlong link_n, + jobjectArray link_value, jlong access_id) { - H5L_info_t infobuf; + H5L_info2_t infobuf; const char *file_name = NULL; - const char *obj_name = NULL; - const char *grpName = NULL; + const char *obj_name = NULL; + const char *grpName = NULL; jstring str; herr_t status; - void *linkValue = NULL; + void * linkValue = NULL; UNUSED(clss); @@ -516,25 +562,27 @@ Java_hdf_hdf5lib_H5_H5Lget_1value_1by_1idx PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Lget_val_by_idx: group name not pinned"); /* Get the length of the link value */ - if ((status = H5Lget_info_by_idx((hid_t)loc_id, grpName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, &infobuf, (hid_t)access_id)) < 0) + if ((status = H5Lget_info_by_idx2((hid_t)loc_id, grpName, (H5_index_t)index_field, (H5_iter_order_t)order, + (hsize_t)link_n, &infobuf, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (H5L_TYPE_HARD == infobuf.type) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Lget_val_by_idx: hard links are unsupported") + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Lget_val_by_idx: hard links are unsupported"); if (!infobuf.u.val_size) H5_LIBRARY_ERROR(ENVONLY); - if (NULL == (linkValue = (void *) HDmalloc(infobuf.u.val_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Lget_val_by_idx: failed to allocate buffer for link value"); + if (NULL == (linkValue = (void *)HDmalloc(infobuf.u.val_size + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Lget_val_by_idx: failed to allocate buffer for link value"); - if ((status = H5Lget_val_by_idx((hid_t)loc_id, grpName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, (void *)linkValue, infobuf.u.val_size + 1, (hid_t)access_id)) < 0) + if ((status = H5Lget_val_by_idx((hid_t)loc_id, grpName, (H5_index_t)index_field, (H5_iter_order_t)order, + (hsize_t)link_n, (void *)linkValue, infobuf.u.val_size + 1, + (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); - ((char *) linkValue)[infobuf.u.val_size] = '\0'; + ((char *)linkValue)[infobuf.u.val_size] = '\0'; switch (infobuf.type) { - case H5L_TYPE_SOFT: - { + case H5L_TYPE_SOFT: { if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, (char *)linkValue))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); @@ -544,9 +592,9 @@ Java_hdf_hdf5lib_H5_H5Lget_1value_1by_1idx break; } - case H5L_TYPE_EXTERNAL: - { - if ((status = H5Lunpack_elink_val((char *)linkValue, (size_t)infobuf.u.val_size, (unsigned *)NULL, (const char **)&file_name, (const char**)&obj_name)) < 0) + case H5L_TYPE_EXTERNAL: { + if ((status = H5Lunpack_elink_val((char *)linkValue, (size_t)infobuf.u.val_size, (unsigned *)NULL, + (const char **)&file_name, (const char **)&obj_name)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, obj_name))) @@ -568,7 +616,7 @@ Java_hdf_hdf5lib_H5_H5Lget_1value_1by_1idx case H5L_TYPE_MAX: case H5L_TYPE_HARD: default: - H5_JNI_FATAL_ERROR(ENVONLY, "H5Lget_val_by_idx: invalid link type"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Lget_val_by_idx: invalid link type"); break; } @@ -587,13 +635,12 @@ done: * Signature: (JLjava/lang/String;JLjava/lang/String;JJ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Lmove - (JNIEnv *env, jclass clss, jlong cur_loc_id, jstring cur_name, - jlong dst_loc_id, jstring dst_name, jlong create_id, jlong access_id) +Java_hdf_hdf5lib_H5_H5Lmove(JNIEnv *env, jclass clss, jlong cur_loc_id, jstring cur_name, jlong dst_loc_id, + jstring dst_name, jlong create_id, jlong access_id) { const char *lCurName = NULL; const char *lDstName = NULL; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -605,7 +652,8 @@ Java_hdf_hdf5lib_H5_H5Lmove PIN_JAVA_STRING(ENVONLY, cur_name, lCurName, NULL, "H5Lmove: src name not pinned"); PIN_JAVA_STRING(ENVONLY, dst_name, lDstName, NULL, "H5Lmove: dest name not pinned"); - if ((status = H5Lmove((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id)) < 0) + if ((status = H5Lmove((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, + (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -615,52 +663,69 @@ done: UNPIN_JAVA_STRING(ENVONLY, cur_name, lCurName); } /* end Java_hdf_hdf5lib_H5_H5Lmove */ +/* + * Shim function for link iteration and link visiting which + */ static herr_t -H5L_iterate_cb - (hid_t g_id, const char *name, const H5L_info_t *info, void *cb_data) +H5L_iterate_cb(hid_t g_id, const char *name, const H5L_info2_t *info, void *cb_data) { cb_wrapper *wrapper = (cb_wrapper *)cb_data; - jmethodID constructor, mid; - jobject cb_info_t = NULL; + jmethodID mid; + jobject cb_info_t = NULL; jobject visit_callback = wrapper->visit_callback; jstring str; - JNIEnv *cbenv = NULL; - jclass cls; + JNIEnv * cbenv = NULL; + jclass cbcls; jvalue args[5]; - void *op_data = (void *)wrapper->op_data; - jint status = -1; + void * op_data = (void *)wrapper->op_data; + jint status = -1; if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) { CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE); H5_JNI_FATAL_ERROR(CBENVONLY, "H5L_iterate_cb: failed to attach current thread to JVM"); } - if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback))) + /* Get the Method ID for the "callback" function of the H5L_iterate_t class */ + if (NULL == (cbcls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JLjava/lang/String;Lhdf/hdf5lib/structs/H5L_info_t;Lhdf/hdf5lib/callbacks/H5L_iterate_t;)I"))) + if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cbcls, "callback", + "(JLjava/lang/String;Lhdf/hdf5lib/structs/H5L_info_t;Lhdf/" + "hdf5lib/callbacks/H5L_iterate_opdata_t;)I"))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); if (NULL == (str = CBENVPTR->NewStringUTF(CBENVONLY, name))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - args[0].i = info->type; - args[1].z = info->corder_valid; - args[2].j = info->corder; - args[3].i = info->cset; - args[4].j = (info->type == H5L_TYPE_HARD) ? (jlong)info->u.address : (jlong)info->u.val_size; - - /* Get a reference to your class if you don't have it already */ - if (NULL == (cls = CBENVPTR->FindClass(CBENVONLY, "hdf/hdf5lib/structs/H5L_info_t"))) - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - - /* Get a reference to the constructor; the name is <init> */ - if (NULL == (constructor = CBENVPTR->GetMethodID(CBENVONLY, cls, "<init>", "(IZJIJ)V"))) - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - - if (NULL == (cb_info_t = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args))) { - HDprintf("FATAL ERROR: hdf/hdf5lib/structs/H5L_info_t: Creation failed\n"); - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); + /* + * Set the last argument based upon whether this is a hard link (which returns object tokens) + * or a soft/user-defined link (which returns the link's value size). Then, call the appropriate + * constructor to instantiate an H5L_info_t object. + */ + if (info->type == H5L_TYPE_HARD) { + jobject token; + + /* Create an H5O_token_t object */ + if (NULL == (token = create_H5O_token_t(CBENVONLY, &info->u.token, FALSE))) + CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); + + args[0].i = info->type; + args[1].z = info->corder_valid; + args[2].j = info->corder; + args[3].i = info->cset; + args[4].l = token; + + CALL_CONSTRUCTOR(CBENVONLY, "hdf/hdf5lib/structs/H5L_info_t", + "(IZJILhdf/hdf5lib/structs/H5O_token_t;)V", args, cb_info_t); + } + else { + args[0].i = info->type; + args[1].z = info->corder_valid; + args[2].j = info->corder; + args[3].i = info->cset; + args[4].j = (jlong)info->u.val_size; + + CALL_CONSTRUCTOR(CBENVONLY, "hdf/hdf5lib/structs/H5L_info_t", "(IZJIJ)V", args, cb_info_t); } status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, g_id, str, cb_info_t, op_data); @@ -679,12 +744,11 @@ done: * Signature: (JIILjava/lang/Object;Ljava/lang/Object;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Lvisit - (JNIEnv *env, jclass clss, jlong grp_id, jint idx_type, jint order, - jobject callback_op, jobject op_data) +Java_hdf_hdf5lib_H5_H5Lvisit(JNIEnv *env, jclass clss, jlong grp_id, jint idx_type, jint order, + jobject callback_op, jobject op_data) { - cb_wrapper wrapper = { callback_op, op_data }; - herr_t status = FAIL; + cb_wrapper wrapper = {callback_op, op_data}; + herr_t status = FAIL; UNUSED(clss); @@ -696,7 +760,8 @@ Java_hdf_hdf5lib_H5_H5Lvisit if (NULL == callback_op) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Lvisit: callback_op is NULL"); - if ((status = H5Lvisit((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5L_iterate_t)H5L_iterate_cb, (void *)&wrapper)) < 0) + if ((status = H5Lvisit2((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, H5L_iterate_cb, + (void *)&wrapper)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -709,13 +774,12 @@ done: * Signature: (JLjava/lang/String;IILjava/lang/Object;Ljava/lang/Object;J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Lvisit_1by_1name - (JNIEnv *env, jclass clss, jlong grp_id, jstring name, jint idx_type, jint order, - jobject callback_op, jobject op_data, jlong access_id) +Java_hdf_hdf5lib_H5_H5Lvisit_1by_1name(JNIEnv *env, jclass clss, jlong grp_id, jstring name, jint idx_type, + jint order, jobject callback_op, jobject op_data, jlong access_id) { - cb_wrapper wrapper = { callback_op, op_data }; + cb_wrapper wrapper = {callback_op, op_data}; const char *grpName = NULL; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -731,7 +795,8 @@ Java_hdf_hdf5lib_H5_H5Lvisit_1by_1name PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Lvisit_by_name: group name not pinned"); - if ((status = H5Lvisit_by_name((hid_t)grp_id, grpName, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5L_iterate_t)H5L_iterate_cb, (void *)&wrapper, (hid_t)access_id)) < 0) + if ((status = H5Lvisit_by_name2((hid_t)grp_id, grpName, (H5_index_t)idx_type, (H5_iter_order_t)order, + H5L_iterate_cb, (void *)&wrapper, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -747,13 +812,12 @@ done: * Signature: (JIIJLjava/lang/Object;Ljava/lang/Object;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Literate - (JNIEnv *env, jclass clss, jlong grp_id, jint idx_type, jint order, - jlong idx, jobject callback_op, jobject op_data) +Java_hdf_hdf5lib_H5_H5Literate(JNIEnv *env, jclass clss, jlong grp_id, jint idx_type, jint order, jlong idx, + jobject callback_op, jobject op_data) { - cb_wrapper wrapper = { callback_op, op_data }; + cb_wrapper wrapper = {callback_op, op_data}; hsize_t start_idx = (hsize_t)idx; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -765,7 +829,8 @@ Java_hdf_hdf5lib_H5_H5Literate if (NULL == callback_op) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Literate: callback_op is NULL"); - if ((status = H5Literate((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t *)&start_idx, (H5L_iterate_t)H5L_iterate_cb, (void *)&wrapper)) < 0) + if ((status = H5Literate2((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, &start_idx, + H5L_iterate_cb, (void *)&wrapper)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -778,14 +843,14 @@ done: * Signature: (JLjava/lang/String;IIJLjava/lang/Object;Ljava/lang/Object;J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Literate_1by_1name - (JNIEnv *env, jclass clss, jlong grp_id, jstring name, jint idx_type, jint order, - jlong idx, jobject callback_op, jobject op_data, jlong access_id) +Java_hdf_hdf5lib_H5_H5Literate_1by_1name(JNIEnv *env, jclass clss, jlong grp_id, jstring name, jint idx_type, + jint order, jlong idx, jobject callback_op, jobject op_data, + jlong access_id) { - cb_wrapper wrapper = { callback_op, op_data }; + cb_wrapper wrapper = {callback_op, op_data}; const char *groupName = NULL; hsize_t start_idx = (hsize_t)idx; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -801,7 +866,8 @@ Java_hdf_hdf5lib_H5_H5Literate_1by_1name PIN_JAVA_STRING(ENVONLY, name, groupName, NULL, "H5Literate_by_name: group name not pinned"); - if ((status = H5Literate_by_name((hid_t)grp_id, groupName, (H5_index_t)idx_type, (H5_iter_order_t)order, (hsize_t*)&start_idx, (H5L_iterate_t)H5L_iterate_cb, (void*)&wrapper, (hid_t)access_id)) < 0) + if ((status = H5Literate_by_name2((hid_t)grp_id, groupName, (H5_index_t)idx_type, (H5_iter_order_t)order, + &start_idx, H5L_iterate_cb, (void *)&wrapper, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -817,8 +883,7 @@ done: * Signature: (I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Lis_1registered - (JNIEnv *env, jclass clss, jint link_cls_id) +Java_hdf_hdf5lib_H5_H5Lis_1registered(JNIEnv *env, jclass clss, jint link_cls_id) { htri_t ret_val = FAIL; @@ -837,8 +902,7 @@ done: * Signature: (I)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Lunregister - (JNIEnv *env, jclass clss, jint link_cls_id) +Java_hdf_hdf5lib_H5_H5Lunregister(JNIEnv *env, jclass clss, jint link_cls_id) { UNUSED(clss); @@ -849,7 +913,6 @@ done: return; } /* end Java_hdf_hdf5lib_H5_H5Lunregister */ - #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ diff --git a/java/src/jni/h5lImp.h b/java/src/jni/h5lImp.h index 3a7d8ea..85aff03 100644 --- a/java/src/jni/h5lImp.h +++ b/java/src/jni/h5lImp.h @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -14,187 +13,161 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5_H5L */ -#ifndef _Included_hdf_hdf5lib_H5_H5L -#define _Included_hdf_hdf5lib_H5_H5L +#ifndef Included_hdf_hdf5lib_H5_H5L +#define Included_hdf_hdf5lib_H5_H5L #ifdef __cplusplus extern "C" { #endif /* __cplusplus */ - /* * Class: hdf_hdf5lib_H5 * Method: H5Lcopy * Signature: (JLjava/lang/String;JLjava/lang/String;JJ)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Lcopy - (JNIEnv*, jclass, jlong, jstring, jlong, jstring, jlong, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Lcopy(JNIEnv *, jclass, jlong, jstring, jlong, jstring, jlong, + jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Lcreate_external * Signature: (Ljava/lang/String;Ljava/lang/String;JLjava/lang/String;JJ)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Lcreate_1external -(JNIEnv*, jclass, jstring, jstring, jlong, jstring, jlong, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Lcreate_1external(JNIEnv *, jclass, jstring, jstring, jlong, + jstring, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Lcreate_hard * Signature: (JLjava/lang/String;JLjava/lang/String;JJ)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Lcreate_1hard - (JNIEnv*, jclass, jlong, jstring, jlong, jstring, jlong, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Lcreate_1hard(JNIEnv *, jclass, jlong, jstring, jlong, jstring, + jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Lcreate_soft * Signature: (Ljava/lang/String;JLjava/lang/String;JJ)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Lcreate_1soft - (JNIEnv*, jclass, jstring, jlong, jstring, jlong, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Lcreate_1soft(JNIEnv *, jclass, jstring, jlong, jstring, jlong, + jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Ldelete * Signature: (JLjava/lang/String;J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Ldelete - (JNIEnv*, jclass, jlong, jstring, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Ldelete(JNIEnv *, jclass, jlong, jstring, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Ldelete_by_idx * Signature: (JLjava/lang/String;IIJJ)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Ldelete_1by_1idx -(JNIEnv*, jclass, jlong, jstring, jint, jint, jlong, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Ldelete_1by_1idx(JNIEnv *, jclass, jlong, jstring, jint, jint, + jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Lexists * Signature: (JLjava/lang/String;J)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Lexists - (JNIEnv*, jclass, jlong, jstring, jlong); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Lexists(JNIEnv *, jclass, jlong, jstring, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Lget_info * Signature: (JLjava/lang/String;J)Lhdf/hdf5lib/structs/H5L_info_t; */ -JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Lget_1info -(JNIEnv*, jclass, jlong, jstring, jlong); +JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Lget_1info(JNIEnv *, jclass, jlong, jstring, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Lget_info_by_idx * Signature: (JLjava/lang/String;IIJJ)Lhdf/hdf5lib/structs/H5L_info_t; */ -JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Lget_1info_1by_1idx -(JNIEnv*, jclass, jlong, jstring, jint, jint, jlong, jlong); +JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Lget_1info_1by_1idx(JNIEnv *, jclass, jlong, jstring, jint, + jint, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Lget_name_by_idx * Signature: (JLjava/lang/String;IIJJ)Ljava/lang/String; */ -JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Lget_1name_1by_1idx -(JNIEnv*, jclass, jlong, jstring, jint, jint, jlong, jlong); +JNIEXPORT jstring JNICALL Java_hdf_hdf5lib_H5_H5Lget_1name_1by_1idx(JNIEnv *, jclass, jlong, jstring, jint, + jint, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Lget_value * Signature: (JLjava/lang/String;[Ljava/lang/String;J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Lget_1value - (JNIEnv*, jclass, jlong, jstring, jobjectArray, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Lget_1value(JNIEnv *, jclass, jlong, jstring, jobjectArray, + jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Lget_value_by_idx * Signature: (JLjava/lang/String;IIJ[Ljava/lang/String;J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Lget_1value_1by_1idx -(JNIEnv*, jclass, jlong, jstring, jint, jint, jlong, jobjectArray, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Lget_1value_1by_1idx(JNIEnv *, jclass, jlong, jstring, jint, + jint, jlong, jobjectArray, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Lmove * Signature: (JLjava/lang/String;JLjava/lang/String;JJ)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Lmove - (JNIEnv*, jclass, jlong, jstring, jlong, jstring, jlong, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Lmove(JNIEnv *, jclass, jlong, jstring, jlong, jstring, jlong, + jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Lvisit * Signature: (JIILjava/lang/Object;Ljava/lang/Object;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Lvisit - (JNIEnv*, jclass, jlong, jint, jint, jobject, jobject); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Lvisit(JNIEnv *, jclass, jlong, jint, jint, jobject, jobject); /* * Class: hdf_hdf5lib_H5 * Method: H5Lvisit_by_name * Signature: (JLjava/lang/String;IILjava/lang/Object;Ljava/lang/Object;J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Lvisit_1by_1name - (JNIEnv*, jclass, jlong, jstring, jint, jint, jobject, jobject, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Lvisit_1by_1name(JNIEnv *, jclass, jlong, jstring, jint, jint, + jobject, jobject, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Literate * Signature: (JIIJLjava/lang/Object;Ljava/lang/Object;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Literate - (JNIEnv*, jclass, jlong, jint, jint, jlong, jobject, jobject); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Literate(JNIEnv *, jclass, jlong, jint, jint, jlong, jobject, + jobject); /* * Class: hdf_hdf5lib_H5 * Method: H5Literate_by_name * Signature: (JLjava/lang/String;IIJLjava/lang/Object;Ljava/lang/Object;J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Literate_1by_1name - (JNIEnv*, jclass, jlong, jstring, jint, jint, jlong, jobject, jobject, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Literate_1by_1name(JNIEnv *, jclass, jlong, jstring, jint, jint, + jlong, jobject, jobject, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Lis_registered * Signature: (I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Lis_1registered - (JNIEnv*, jclass, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Lis_1registered(JNIEnv *, jclass, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Lunregister * Signature: (I)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Lunregister - (JNIEnv*, jclass, jint); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Lunregister(JNIEnv *, jclass, jint); #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5L */ +#endif /* Included_hdf_hdf5lib_H5_H5L */ diff --git a/java/src/jni/h5oImp.c b/java/src/jni/h5oImp.c index b49a3e9..3037bc6 100644 --- a/java/src/jni/h5oImp.c +++ b/java/src/jni/h5oImp.c @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -40,7 +39,59 @@ typedef struct _cb_wrapper { /* Local Prototypes */ /********************/ -static herr_t H5O_iterate_cb(hid_t g_id, const char *name, const H5O_info_t *info, void *cb_data); +static herr_t H5O_iterate_cb(hid_t g_id, const char *name, const H5O_info2_t *info, void *cb_data); + +/* + * Create a java object of hdf.hdf5lib.structs.H5O_token_t. + */ +jobject +create_H5O_token_t(JNIEnv *envptr, const H5O_token_t *token, hbool_t is_critical_pinning) +{ + jbyteArray tokenByteBuf; + jboolean token_buf_is_copy; + jvalue constructor_args[1]; + jbyte * token_buf = NULL; + jobject ret_token_obj = NULL; + + if (NULL == (tokenByteBuf = (*envptr)->NewByteArray(envptr, H5O_MAX_TOKEN_SIZE))) + CHECK_JNI_EXCEPTION(envptr, JNI_FALSE); + + if (is_critical_pinning) + PIN_BYTE_ARRAY_CRITICAL(envptr, tokenByteBuf, token_buf, &token_buf_is_copy, + "create_H5O_token_t: object token buffer not pinned"); + else + PIN_BYTE_ARRAY(envptr, tokenByteBuf, token_buf, &token_buf_is_copy, + "create_H5O_token_t: object token buffer not pinned"); + + HDmemcpy(token_buf, token, sizeof(H5O_token_t)); + + if (is_critical_pinning) + UNPIN_ARRAY_CRITICAL(envptr, tokenByteBuf, token_buf, 0); + else + UNPIN_BYTE_ARRAY(envptr, tokenByteBuf, token_buf, 0); + + token_buf = NULL; + + constructor_args[0].l = tokenByteBuf; + CALL_CONSTRUCTOR(envptr, "hdf/hdf5lib/structs/H5O_token_t", "([B)V", constructor_args, ret_token_obj); + + /* + * If critical pinning is being used, this routine is probably being + * called within a loop, so we'll clean up local references. + */ + if (is_critical_pinning) + (*envptr)->DeleteLocalRef(envptr, tokenByteBuf); + +done: + if (token_buf) { + if (is_critical_pinning) + UNPIN_ARRAY_CRITICAL(envptr, tokenByteBuf, token_buf, JNI_ABORT); + else + UNPIN_BYTE_ARRAY(envptr, tokenByteBuf, token_buf, JNI_ABORT); + } /* end if */ + + return ret_token_obj; +} /* end create_H5O_token_t */ /* * Class: hdf_hdf5lib_H5 @@ -48,11 +99,10 @@ static herr_t H5O_iterate_cb(hid_t g_id, const char *name, const H5O_info_t *inf * Signature: (JLjava/lang/String;J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Oopen - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_plist_id) +Java_hdf_hdf5lib_H5__1H5Oopen(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_plist_id) { const char *objName = NULL; - hid_t status = H5I_INVALID_HID; + hid_t status = H5I_INVALID_HID; UNUSED(clss); @@ -77,8 +127,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5__1H5Oclose - (JNIEnv *env, jclass clss, jlong object_id) +Java_hdf_hdf5lib_H5__1H5Oclose(JNIEnv *env, jclass clss, jlong object_id) { herr_t retVal = FAIL; @@ -97,13 +146,12 @@ done: * Signature: (JLjava/lang/String;JLjava/lang/String;JJ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Ocopy - (JNIEnv *env, jclass clss, jlong cur_loc_id, jstring cur_name, - jlong dst_loc_id, jstring dst_name, jlong create_id, jlong access_id) +Java_hdf_hdf5lib_H5_H5Ocopy(JNIEnv *env, jclass clss, jlong cur_loc_id, jstring cur_name, jlong dst_loc_id, + jstring dst_name, jlong create_id, jlong access_id) { const char *lCurName = NULL; const char *lDstName = NULL; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -115,7 +163,8 @@ Java_hdf_hdf5lib_H5_H5Ocopy PIN_JAVA_STRING(ENVONLY, cur_name, lCurName, NULL, "H5Ocopy: src name not pinned"); PIN_JAVA_STRING(ENVONLY, dst_name, lDstName, NULL, "H5Ocopy: dest name not pinned"); - if ((status = H5Ocopy((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, (hid_t)access_id)) < 0) + if ((status = H5Ocopy((hid_t)cur_loc_id, lCurName, (hid_t)dst_loc_id, lDstName, (hid_t)create_id, + (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -131,20 +180,161 @@ done: * Signature: (JI)Lhdf/hdf5lib/structs/H5O_info_t; */ JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Oget_1info - (JNIEnv *env, jclass clss, jlong loc_id, jint fields) +Java_hdf_hdf5lib_H5_H5Oget_1info(JNIEnv *env, jclass clss, jlong loc_id, jint fields) +{ + H5O_info2_t infobuf; + jobject token; + jvalue args[9]; + herr_t status = FAIL; + jobject ret_obj = NULL; + + UNUSED(clss); + + if ((status = H5Oget_info3((hid_t)loc_id, &infobuf, (unsigned)fields)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + if (NULL == (token = create_H5O_token_t(ENVONLY, &infobuf.token, FALSE))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + args[0].j = (jlong)infobuf.fileno; + args[1].l = token; + args[2].i = infobuf.type; + args[3].i = (jint)infobuf.rc; + args[4].j = infobuf.atime; + args[5].j = infobuf.mtime; + args[6].j = infobuf.ctime; + args[7].j = infobuf.btime; + args[8].j = (jlong)infobuf.num_attrs; + + CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_info_t", + "(JLhdf/hdf5lib/structs/H5O_token_t;IIJJJJJ)V", args, ret_obj); + +done: + return ret_obj; +} /* end Java_hdf_hdf5lib_H5_H5Oget_1info */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Oget_info_by_name + * Signature: (JLjava/lang/String;IJ)Lhdf/hdf5lib/structs/H5O_info_t; + */ +JNIEXPORT jobject JNICALL +Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1name(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint fields, + jlong access_id) +{ + H5O_info2_t infobuf; + const char *objName = NULL; + jobject token; + jvalue args[9]; + herr_t status = FAIL; + jobject ret_obj = NULL; + + UNUSED(clss); + + if (NULL == name) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Oget_info_by_name: object name is NULL"); + + PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Oget_info_by_name: object name not pinned"); + + if ((status = + H5Oget_info_by_name3((hid_t)loc_id, objName, &infobuf, (unsigned)fields, (hid_t)access_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + /* Create an H5O_token_t object */ + if (NULL == (token = create_H5O_token_t(ENVONLY, &infobuf.token, FALSE))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + args[0].j = (jlong)infobuf.fileno; + args[1].l = token; + args[2].i = infobuf.type; + args[3].i = (jint)infobuf.rc; + args[4].j = infobuf.atime; + args[5].j = infobuf.mtime; + args[6].j = infobuf.ctime; + args[7].j = infobuf.btime; + args[8].j = (jlong)infobuf.num_attrs; + + CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_info_t", + "(JLhdf/hdf5lib/structs/H5O_token_t;IIJJJJJ)V", args, ret_obj); + +done: + if (objName) + UNPIN_JAVA_STRING(ENVONLY, name, objName); + + return ret_obj; +} /* end Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1name */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Oget_info_by_idx + * Signature: (JLjava/lang/String;IIJIJ)Lhdf/hdf5lib/structs/H5O_info_t; + */ +JNIEXPORT jobject JNICALL +Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1idx(JNIEnv *env, jclass clss, jlong loc_id, jstring name, + jint index_field, jint order, jlong link_n, jint fields, + jlong access_id) +{ + H5O_info2_t infobuf; + const char *grpName = NULL; + jobject token; + jvalue args[9]; + herr_t status = FAIL; + jobject ret_obj = NULL; + + UNUSED(clss); + + if (NULL == name) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Oget_info_by_idx: group name is NULL"); + + PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Oget_info_by_idx: group name not pinned"); + + if ((status = H5Oget_info_by_idx3((hid_t)loc_id, grpName, (H5_index_t)index_field, (H5_iter_order_t)order, + (hsize_t)link_n, &infobuf, (unsigned)fields, (hid_t)access_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + /* Create an H5O_token_t object */ + if (NULL == (token = create_H5O_token_t(ENVONLY, &infobuf.token, FALSE))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + args[0].j = (jlong)infobuf.fileno; + args[1].l = token; + args[2].i = infobuf.type; + args[3].i = (jint)infobuf.rc; + args[4].j = infobuf.atime; + args[5].j = infobuf.mtime; + args[6].j = infobuf.ctime; + args[7].j = infobuf.btime; + args[8].j = (jlong)infobuf.num_attrs; + + CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_info_t", + "(JLhdf/hdf5lib/structs/H5O_token_t;IIJJJJJ)V", args, ret_obj); + +done: + if (grpName) + UNPIN_JAVA_STRING(ENVONLY, name, grpName); + + return ret_obj; +} /* end Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1idx */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Oget_native_info + * Signature: (JI)Lhdf/hdf5lib/structs/H5O_native_info_t; + */ +JNIEXPORT jobject JNICALL +Java_hdf_hdf5lib_H5_H5Oget_1native_1info(JNIEnv *env, jclass clss, jlong loc_id, jint fields) { - H5O_info_t infobuf; - jobject hdrinfobuf; - jobject ihinfobuf1; - jobject ihinfobuf2; - jvalue args[12]; - herr_t status = FAIL; - jobject ret_obj = NULL; + H5O_native_info_t infobuf; + jobject hdrinfobuf; + jobject obj_ihinfobuf; + jobject attr_ihinfobuf; + jvalue args[10]; + herr_t status = FAIL; + jobject ret_obj = NULL; UNUSED(clss); - if ((status = H5Oget_info2((hid_t)loc_id, &infobuf, (unsigned)fields)) < 0) + if ((status = H5Oget_native_info((hid_t)loc_id, &infobuf, (unsigned)fields)) < 0) H5_LIBRARY_ERROR(ENVONLY); args[0].i = (jint)infobuf.hdr.version; @@ -165,59 +355,54 @@ Java_hdf_hdf5lib_H5_H5Oget_1info args[1].j = (jlong)infobuf.meta_size.obj.heap_size; CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args, ret_obj); - ihinfobuf1 = ret_obj; + obj_ihinfobuf = ret_obj; args[0].j = (jlong)infobuf.meta_size.attr.index_size; args[1].j = (jlong)infobuf.meta_size.attr.heap_size; CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args, ret_obj); - ihinfobuf2 = ret_obj; + attr_ihinfobuf = ret_obj; - args[0].j = (jlong)infobuf.fileno; - args[1].j = (jlong)infobuf.addr; - args[2].i = infobuf.type; - args[3].i = (jint)infobuf.rc; - args[4].j = (jlong)infobuf.num_attrs; - args[5].j = infobuf.atime; - args[6].j = infobuf.mtime; - args[7].j = infobuf.ctime; - args[8].j = infobuf.btime; - args[9].l = hdrinfobuf; - args[10].l = ihinfobuf1; - args[11].l = ihinfobuf2; + args[0].l = hdrinfobuf; + args[1].l = obj_ihinfobuf; + args[2].l = attr_ihinfobuf; - CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_info_t", "(JJIIJJJJJLhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;)V", args, ret_obj); + CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_native_info_t", + "(Lhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/" + "structs/H5_ih_info_t;)V", + args, ret_obj); done: return ret_obj; -} /* end Java_hdf_hdf5lib_H5_H5Oget_1info */ +} /* end Java_hdf_hdf5lib_H5_H5Oget_1native_1info */ /* * Class: hdf_hdf5lib_H5 - * Method: H5Oget_info_by_name - * Signature: (JLjava/lang/String;IJ)Lhdf/hdf5lib/structs/H5O_info_t; + * Method: H5Oget_native_info_by_name + * Signature: (JLjava/lang/String;IJ)Lhdf/hdf5lib/structs/H5O_native_info_t; */ JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1name - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint fields, jlong access_id) +Java_hdf_hdf5lib_H5_H5Oget_1native_1info_1by_1name(JNIEnv *env, jclass clss, jlong loc_id, jstring name, + jint fields, jlong access_id) { - H5O_info_t infobuf; - const char *objName = NULL; - jobject hdrinfobuf; - jobject ihinfobuf1; - jobject ihinfobuf2; - jvalue args[12]; - herr_t status = FAIL; - jobject ret_obj = NULL; + H5O_native_info_t infobuf; + const char * objName = NULL; + jobject hdrinfobuf; + jobject obj_ihinfobuf; + jobject attr_ihinfobuf; + jvalue args[10]; + herr_t status = FAIL; + jobject ret_obj = NULL; UNUSED(clss); if (NULL == name) - H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Oget_info_by_name: object name is NULL"); + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Oget_native_info_by_name: object name is NULL"); - PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Oget_info_by_name: object name not pinned"); + PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Oget_native_info_by_name: object name not pinned"); - if ((status = H5Oget_info_by_name2((hid_t)loc_id, objName, &infobuf, (unsigned)fields, (hid_t)access_id)) < 0) + if ((status = H5Oget_native_info_by_name((hid_t)loc_id, objName, &infobuf, (unsigned)fields, + (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); args[0].i = (jint)infobuf.hdr.version; @@ -238,63 +423,59 @@ Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1name args[1].j = (jlong)infobuf.meta_size.obj.heap_size; CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args, ret_obj); - ihinfobuf1 = ret_obj; + obj_ihinfobuf = ret_obj; args[0].j = (jlong)infobuf.meta_size.attr.index_size; args[1].j = (jlong)infobuf.meta_size.attr.heap_size; CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args, ret_obj); - ihinfobuf2 = ret_obj; + attr_ihinfobuf = ret_obj; - args[0].j = (jlong)infobuf.fileno; - args[1].j = (jlong)infobuf.addr; - args[2].i = infobuf.type; - args[3].i = (jint)infobuf.rc; - args[4].j = (jlong)infobuf.num_attrs; - args[5].j = infobuf.atime; - args[6].j = infobuf.mtime; - args[7].j = infobuf.ctime; - args[8].j = infobuf.btime; - args[9].l = hdrinfobuf; - args[10].l = ihinfobuf1; - args[11].l = ihinfobuf2; + args[0].l = hdrinfobuf; + args[1].l = obj_ihinfobuf; + args[2].l = attr_ihinfobuf; - CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_info_t", "(JJIIJJJJJLhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;)V", args, ret_obj); + CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_native_info_t", + "(Lhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/" + "structs/H5_ih_info_t;)V", + args, ret_obj); done: if (objName) UNPIN_JAVA_STRING(ENVONLY, name, objName); return ret_obj; -} /* end Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1name */ +} /* end Java_hdf_hdf5lib_H5_H5Oget_1native_1info_1by_1name */ /* * Class: hdf_hdf5lib_H5 - * Method: H5Oget_info_by_idx - * Signature: (JLjava/lang/String;IIJIJ)Lhdf/hdf5lib/structs/H5O_info_t; + * Method: H5Oget_native_info_by_idx + * Signature: (JLjava/lang/String;IIJIJ)Lhdf/hdf5lib/structs/H5O_native_info_t; */ JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1idx - (JNIEnv *env, jclass clss, jlong loc_id, - jstring name, jint index_field, jint order, jlong link_n, jint fields, jlong access_id) +Java_hdf_hdf5lib_H5_H5Oget_1native_1info_1by_1idx(JNIEnv *env, jclass clss, jlong loc_id, jstring name, + jint index_field, jint order, jlong link_n, jint fields, + jlong access_id) { - H5O_info_t infobuf; - const char *grpName = NULL; - jobject hdrinfobuf; - jobject ihinfobuf1; - jobject ihinfobuf2; - jvalue args[12]; - herr_t status = FAIL; - jobject ret_obj = NULL; + H5O_native_info_t infobuf; + const char * grpName = NULL; + jobject hdrinfobuf; + jobject obj_ihinfobuf; + jobject attr_ihinfobuf; + jvalue args[10]; + herr_t status = FAIL; + jobject ret_obj = NULL; UNUSED(clss); if (NULL == name) - H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Oget_info_by_idx: group name is NULL"); + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Oget_native_info_by_idx: group name is NULL"); - PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Oget_info_by_idx: group name not pinned"); + PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Oget_native_info_by_idx: group name not pinned"); - if ((status = H5Oget_info_by_idx2((hid_t)loc_id, grpName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, &infobuf, (unsigned)fields, (hid_t)access_id)) < 0) + if ((status = H5Oget_native_info_by_idx((hid_t)loc_id, grpName, (H5_index_t)index_field, + (H5_iter_order_t)order, (hsize_t)link_n, &infobuf, + (unsigned)fields, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); args[0].i = (jint)infobuf.hdr.version; @@ -315,35 +496,29 @@ Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1idx args[1].j = (jlong)infobuf.meta_size.obj.heap_size; CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args, ret_obj); - ihinfobuf1 = ret_obj; + obj_ihinfobuf = ret_obj; args[0].j = (jlong)infobuf.meta_size.attr.index_size; args[1].j = (jlong)infobuf.meta_size.attr.heap_size; CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t", "(JJ)V", args, ret_obj); - ihinfobuf2 = ret_obj; + attr_ihinfobuf = ret_obj; - args[0].j = (jlong)infobuf.fileno; - args[1].j = (jlong)infobuf.addr; - args[2].i = infobuf.type; - args[3].i = (jint)infobuf.rc; - args[4].j = (jlong)infobuf.num_attrs; - args[5].j = infobuf.atime; - args[6].j = infobuf.mtime; - args[7].j = infobuf.ctime; - args[8].j = infobuf.btime; - args[9].l = hdrinfobuf; - args[10].l = ihinfobuf1; - args[11].l = ihinfobuf2; + args[0].l = hdrinfobuf; + args[1].l = obj_ihinfobuf; + args[2].l = attr_ihinfobuf; - CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_info_t", "(JJIIJJJJJLhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;)V", args, ret_obj); + CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5O_native_info_t", + "(Lhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/" + "structs/H5_ih_info_t;)V", + args, ret_obj); done: if (grpName) UNPIN_JAVA_STRING(ENVONLY, name, grpName); return ret_obj; -} /* end Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1idx */ +} /* end Java_hdf_hdf5lib_H5_H5Oget_1native_1info_1by_1idx */ /* * Class: hdf_hdf5lib_H5 @@ -351,12 +526,11 @@ done: * Signature: (JJLjava/lang/String;JJ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Olink - (JNIEnv *env, jclass clss, jlong cur_loc_id, jlong dst_loc_id, - jstring dst_name, jlong create_id, jlong access_id) +Java_hdf_hdf5lib_H5_H5Olink(JNIEnv *env, jclass clss, jlong cur_loc_id, jlong dst_loc_id, jstring dst_name, + jlong create_id, jlong access_id) { const char *linkDstName = NULL; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -365,7 +539,8 @@ Java_hdf_hdf5lib_H5_H5Olink PIN_JAVA_STRING(ENVONLY, dst_name, linkDstName, NULL, "H5Olink: link destination name not pinned"); - if ((status = H5Olink((hid_t)cur_loc_id, (hid_t)dst_loc_id, linkDstName, (hid_t)create_id, (hid_t)access_id)) < 0) + if ((status = H5Olink((hid_t)cur_loc_id, (hid_t)dst_loc_id, linkDstName, (hid_t)create_id, + (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -374,110 +549,53 @@ done: } /* end Java_hdf_hdf5lib_H5_H5Olink */ static herr_t -H5O_iterate_cb - (hid_t g_id, const char *name, const H5O_info_t *info, void *cb_data) +H5O_iterate_cb(hid_t g_id, const char *name, const H5O_info2_t *info, void *cb_data) { cb_wrapper *wrapper = (cb_wrapper *)cb_data; - jmethodID constructor, mid; - jobject cb_info_t = NULL; + jmethodID mid; + jobject cb_info_t = NULL; jobject visit_callback = wrapper->visit_callback; - jobject hdrinfobuf; - jobject ihinfobuf1; - jobject ihinfobuf2; + jobject token; jstring str; - JNIEnv *cbenv = NULL; - jclass cls; + JNIEnv * cbenv = NULL; + jclass cbcls; jvalue args[12]; - void *op_data = (void *)wrapper->op_data; - jint status = FAIL; + void * op_data = (void *)wrapper->op_data; + jint status = FAIL; if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) { CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE); H5_JNI_FATAL_ERROR(CBENVONLY, "H5O_iterate_cb: failed to attach current thread to JVM"); } - if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback))) + if (NULL == (cbcls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JLjava/lang/String;Lhdf/hdf5lib/structs/H5O_info_t;Lhdf/hdf5lib/callbacks/H5O_iterate_t;)I"))) + if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cbcls, "callback", + "(JLjava/lang/String;Lhdf/hdf5lib/structs/H5O_info_t;Lhdf/" + "hdf5lib/callbacks/H5O_iterate_opdata_t;)I"))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); if (NULL == (str = CBENVPTR->NewStringUTF(CBENVONLY, name))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - args[0].i = (jint)info->hdr.version; - args[1].i = (jint)info->hdr.nmesgs; - args[2].i = (jint)info->hdr.nchunks; - args[3].i = (jint)info->hdr.flags; - args[4].j = (jlong)info->hdr.space.total; - args[5].j = (jlong)info->hdr.space.meta; - args[6].j = (jlong)info->hdr.space.mesg; - args[7].j = (jlong)info->hdr.space.free; - args[8].j = (jlong)info->hdr.mesg.present; - args[9].j = (jlong)info->hdr.mesg.shared; - - /* Get a reference to the H5_hdr_info_t class */ - if (NULL == (cls = CBENVPTR->FindClass(CBENVONLY, "hdf/hdf5lib/structs/H5O_hdr_info_t"))) - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - - /* Get a reference to the constructor; the name is <init> */ - if (NULL == (constructor = CBENVPTR->GetMethodID(CBENVONLY, cls, "<init>", "(IIIIJJJJJJ)V"))) + /* Create an H5O_token_t object */ + if (NULL == (token = create_H5O_token_t(CBENVONLY, &info->token, FALSE))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - if (NULL == (hdrinfobuf = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args))) { - HDprintf("H5O_iterate_cb ERROR: hdf/hdf5lib/structs/H5O_hdr_info_t: Creation failed\n"); - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - } - - args[0].j = (jlong)info->meta_size.obj.index_size; - args[1].j = (jlong)info->meta_size.obj.heap_size; - - /* Get a reference to the H5_ih_info_t class */ - if (NULL == (cls = CBENVPTR->FindClass(CBENVONLY, "hdf/hdf5lib/structs/H5_ih_info_t"))) - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - - /* Get a reference to the constructor; the name is <init> */ - if (NULL == (constructor = CBENVPTR->GetMethodID(CBENVONLY, cls, "<init>", "(JJ)V"))) - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - - if (NULL == (ihinfobuf1 = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args))) { - HDprintf("H5O_iterate_cb ERROR: hdf/hdf5lib/structs/H5_ih_info_t: Creation failed\n"); - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - } - - args[0].j = (jlong)info->meta_size.attr.index_size; - args[1].j = (jlong)info->meta_size.attr.heap_size; - - if (NULL == (ihinfobuf2 = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args))) { - HDprintf("H5O_iterate_cb ERROR: hdf/hdf5lib/structs/H5_ih_info_t: Creation failed\n"); - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - } - args[0].j = (jlong)info->fileno; - args[1].j = (jlong)info->addr; + args[1].l = token; args[2].i = info->type; args[3].i = (jint)info->rc; - args[4].j = (jlong)info->num_attrs; - args[5].j = info->atime; - args[6].j = info->mtime; - args[7].j = info->ctime; - args[8].j = info->btime; - args[9].l = hdrinfobuf; - args[10].l = ihinfobuf1; - args[11].l = ihinfobuf2; + args[4].j = info->atime; + args[5].j = info->mtime; + args[6].j = info->ctime; + args[7].j = info->btime; + args[8].j = (jlong)info->num_attrs; /* Get a reference to the H5O_info_t class */ - if (NULL == (cls = CBENVPTR->FindClass(CBENVONLY, "hdf/hdf5lib/structs/H5O_info_t"))) - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - - /* Get a reference to the constructor; the name is <init> */ - if (NULL == (constructor = CBENVPTR->GetMethodID(CBENVONLY, cls, "<init>", "(JJIIJJJJJLhdf/hdf5lib/structs/H5O_hdr_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;Lhdf/hdf5lib/structs/H5_ih_info_t;)V"))) - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - - if (NULL == (cb_info_t = CBENVPTR->NewObjectA(CBENVONLY, cls, constructor, args))) { - HDprintf("H5O_iterate_cb ERROR: hdf/hdf5lib/structs/H5O_info_t: Creation failed\n"); - CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - } + CALL_CONSTRUCTOR(CBENVONLY, "hdf/hdf5lib/structs/H5O_info_t", + "(JLhdf/hdf5lib/structs/H5O_token_t;IIJJJJJ)V", args, cb_info_t); status = CBENVPTR->CallIntMethod(CBENVONLY, visit_callback, mid, g_id, str, cb_info_t, op_data); CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); @@ -495,12 +613,11 @@ done: * Signature: (JIILjava/lang/Object;Ljava/lang/Object;I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Ovisit - (JNIEnv *env, jclass clss, jlong grp_id, jint idx_type, jint order, - jobject callback_op, jobject op_data, jint fields) +Java_hdf_hdf5lib_H5_H5Ovisit(JNIEnv *env, jclass clss, jlong grp_id, jint idx_type, jint order, + jobject callback_op, jobject op_data, jint fields) { - cb_wrapper wrapper = { callback_op, op_data }; - herr_t status = FAIL; + cb_wrapper wrapper = {callback_op, op_data}; + herr_t status = FAIL; UNUSED(clss); @@ -512,7 +629,8 @@ Java_hdf_hdf5lib_H5_H5Ovisit if (NULL == callback_op) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ovisit: callback_op is NULL"); - if ((status = H5Ovisit2((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5O_iterate_t)H5O_iterate_cb, (void *)&wrapper, (unsigned)fields)) < 0) + if ((status = H5Ovisit3((hid_t)grp_id, (H5_index_t)idx_type, (H5_iter_order_t)order, H5O_iterate_cb, + (void *)&wrapper, (unsigned)fields)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -525,13 +643,13 @@ done: * Signature: (JLjava/lang/String;IILjava/lang/Object;Ljava/lang/Object;IJ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Ovisit_1by_1name - (JNIEnv *env, jclass clss, jlong grp_id, jstring name, jint idx_type, jint order, - jobject callback_op, jobject op_data, jint fields, jlong access_id) +Java_hdf_hdf5lib_H5_H5Ovisit_1by_1name(JNIEnv *env, jclass clss, jlong grp_id, jstring name, jint idx_type, + jint order, jobject callback_op, jobject op_data, jint fields, + jlong access_id) { - cb_wrapper wrapper = { callback_op, op_data }; + cb_wrapper wrapper = {callback_op, op_data}; const char *objName = NULL; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -547,7 +665,9 @@ Java_hdf_hdf5lib_H5_H5Ovisit_1by_1name PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Ovisit_by_name: object name not pinned"); - if ((status = H5Ovisit_by_name2((hid_t)grp_id, objName, (H5_index_t)idx_type, (H5_iter_order_t)order, (H5O_iterate_t)H5O_iterate_cb, (void *)&wrapper, (unsigned)fields, (hid_t)access_id)) < 0) + if ((status = H5Ovisit_by_name3((hid_t)grp_id, objName, (H5_index_t)idx_type, (H5_iter_order_t)order, + H5O_iterate_cb, (void *)&wrapper, (unsigned)fields, (hid_t)access_id)) < + 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -563,11 +683,10 @@ done: * Signature: (JLjava/lang/String;)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Oset_1comment - (JNIEnv *env, jclass clss, jlong loc_id, jstring comment) +Java_hdf_hdf5lib_H5_H5Oset_1comment(JNIEnv *env, jclass clss, jlong loc_id, jstring comment) { const char *oComment = NULL; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -588,11 +707,10 @@ done: * Signature: (JLjava/lang/String;Ljava/lang/String;J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Oset_1comment_1by_1name - (JNIEnv *env, jclass clss, jlong loc_id, - jstring name, jstring comment, jlong access_id) +Java_hdf_hdf5lib_H5_H5Oset_1comment_1by_1name(JNIEnv *env, jclass clss, jlong loc_id, jstring name, + jstring comment, jlong access_id) { - const char *objName = NULL; + const char *objName = NULL; const char *objComment = NULL; jboolean isCopy; herr_t status = FAIL; @@ -605,7 +723,8 @@ Java_hdf_hdf5lib_H5_H5Oset_1comment_1by_1name PIN_JAVA_STRING(ENVONLY, name, objName, NULL, "H5Oset_comment_by_name: object name not pinned"); if (NULL != comment) - PIN_JAVA_STRING(ENVONLY, comment, objComment, &isCopy, "H5Oset_comment_by_name: object comment not pinned"); + PIN_JAVA_STRING(ENVONLY, comment, objComment, &isCopy, + "H5Oset_comment_by_name: object comment not pinned"); if ((status = H5Oset_comment_by_name((hid_t)loc_id, objName, objComment, (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -623,13 +742,12 @@ done: * Signature: (J)Ljava/lang/String; */ JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Oget_1comment - (JNIEnv *env, jclass clss, jlong loc_id) +Java_hdf_hdf5lib_H5_H5Oget_1comment(JNIEnv *env, jclass clss, jlong loc_id) { - jstring str = NULL; - ssize_t buf_size; - ssize_t status = -1; - char *oComment = NULL; + jstring str = NULL; + ssize_t buf_size; + ssize_t status = -1; + char * oComment = NULL; UNUSED(clss); @@ -638,8 +756,8 @@ Java_hdf_hdf5lib_H5_H5Oget_1comment H5_LIBRARY_ERROR(ENVONLY); if (buf_size) { - if (NULL == (oComment = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Oget_comment: failed to allocate object comment buffer"); + if (NULL == (oComment = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Oget_comment: failed to allocate object comment buffer"); if ((status = H5Oget_comment((hid_t)loc_id, oComment, (size_t)buf_size + 1)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -662,14 +780,14 @@ done: * Signature: (JLjava/lang/String;J)Ljava/lang/String; */ JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Oget_1comment_1by_1name - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_id) +Java_hdf_hdf5lib_H5_H5Oget_1comment_1by_1name(JNIEnv *env, jclass clss, jlong loc_id, jstring name, + jlong access_id) { const char *objName = NULL; - jstring str = NULL; + jstring str = NULL; ssize_t buf_size; ssize_t status; - char *objComment = NULL; + char * objComment = NULL; UNUSED(clss); @@ -683,10 +801,12 @@ Java_hdf_hdf5lib_H5_H5Oget_1comment_1by_1name H5_LIBRARY_ERROR(ENVONLY); if (buf_size) { - if (NULL == (objComment = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Oget_comment_by_name: failed to allocate buffer for object comment"); + if (NULL == (objComment = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "H5Oget_comment_by_name: failed to allocate buffer for object comment"); - if ((status = H5Oget_comment_by_name((hid_t)loc_id, objName, objComment, (size_t)buf_size + 1, (hid_t)access_id)) < 0) + if ((status = H5Oget_comment_by_name((hid_t)loc_id, objName, objComment, (size_t)buf_size + 1, + (hid_t)access_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); objComment[buf_size] = '\0'; @@ -709,11 +829,10 @@ done: * Signature: (JLjava/lang/String;J)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Oexists_1by_1name - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_id) +Java_hdf_hdf5lib_H5_H5Oexists_1by_1name(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_id) { const char *objName = NULL; - htri_t bval = JNI_FALSE; + htri_t bval = JNI_FALSE; UNUSED(clss); @@ -740,8 +859,7 @@ done: * Signature: (J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Odecr_1refcount - (JNIEnv *env, jclass clss, jlong object_id) +Java_hdf_hdf5lib_H5_H5Odecr_1refcount(JNIEnv *env, jclass clss, jlong object_id) { UNUSED(clss); @@ -758,8 +876,7 @@ done: * Signature: (J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Oincr_1refcount - (JNIEnv *env, jclass clss, jlong object_id) +Java_hdf_hdf5lib_H5_H5Oincr_1refcount(JNIEnv *env, jclass clss, jlong object_id) { UNUSED(clss); @@ -772,23 +889,46 @@ done: /* * Class: hdf_hdf5lib_H5 - * Method: _H5Oopen_by_addr - * Signature: (JJ)J; + * Method: _H5Oopen_by_token + * Signature: (JLhdf/hdf5lib/structs/H5O_token_t;)J; */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Oopen_1by_1addr - (JNIEnv *env, jclass clss, jlong loc_id, jlong addr) +Java_hdf_hdf5lib_H5__1H5Oopen_1by_1token(JNIEnv *env, jclass clss, jlong loc_id, jobject token) { - hid_t retVal = H5I_INVALID_HID; + H5O_token_t obj_token; + jboolean token_buf_is_copy; + jfieldID token_data_field_id; + jclass token_cls; + jbyte * token_buf = NULL; + jobject token_data; + hid_t retVal = H5I_INVALID_HID; UNUSED(clss); - if ((retVal = H5Oopen_by_addr((hid_t)loc_id, (haddr_t)addr)) < 0) + token_cls = ENVPTR->GetObjectClass(ENVONLY, token); + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + if (NULL == (token_data_field_id = ENVPTR->GetFieldID(ENVONLY, token_cls, "data", "[B"))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + token_data = ENVPTR->GetObjectField(ENVONLY, token, token_data_field_id); + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + PIN_BYTE_ARRAY(ENVONLY, (jbyteArray)token_data, token_buf, &token_buf_is_copy, + "H5Oopen_by_token: token buffer not pinned"); + HDmemcpy(&obj_token, token_buf, sizeof(H5O_token_t)); + UNPIN_BYTE_ARRAY(ENVONLY, (jbyteArray)token_data, token_buf, JNI_ABORT); + token_buf = NULL; + + if ((retVal = H5Oopen_by_token((hid_t)loc_id, obj_token)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: + if (token_buf) + UNPIN_BYTE_ARRAY(ENVONLY, (jbyteArray)token_data, token_buf, (retVal < 0) ? JNI_ABORT : 0); + return (jlong)retVal; -} /* end Java_hdf_hdf5lib_H5__1H5Oopen_1by_1addr */ +} /* end Java_hdf_hdf5lib_H5__1H5Oopen_1by_1token */ /* * Class: hdf_hdf5lib_H5 @@ -796,12 +936,11 @@ done: * Signature: (JLjava/lang/String;IIJJ)J; */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Oopen_1by_1idx - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, - jint index_field, jint order, jlong link_n, jlong lapl_id) +Java_hdf_hdf5lib_H5__1H5Oopen_1by_1idx(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jint index_field, + jint order, jlong link_n, jlong lapl_id) { const char *grpName = NULL; - hid_t retVal = H5I_INVALID_HID; + hid_t retVal = H5I_INVALID_HID; UNUSED(clss); @@ -810,7 +949,8 @@ Java_hdf_hdf5lib_H5__1H5Oopen_1by_1idx PIN_JAVA_STRING(ENVONLY, name, grpName, NULL, "H5Oopen_by_idx: object name not pinned"); - if ((retVal = H5Oopen_by_idx((hid_t)loc_id, grpName, (H5_index_t)index_field, (H5_iter_order_t)order, (hsize_t)link_n, (hid_t)lapl_id)) < 0) + if ((retVal = H5Oopen_by_idx((hid_t)loc_id, grpName, (H5_index_t)index_field, (H5_iter_order_t)order, + (hsize_t)link_n, (hid_t)lapl_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -826,8 +966,7 @@ done: * Signature: (J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Oflush - (JNIEnv *env, jclass clss, jlong loc_id) +Java_hdf_hdf5lib_H5_H5Oflush(JNIEnv *env, jclass clss, jlong loc_id) { UNUSED(clss); @@ -844,8 +983,7 @@ done: * Signature: (J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Orefresh - (JNIEnv *env, jclass clss, jlong loc_id) +Java_hdf_hdf5lib_H5_H5Orefresh(JNIEnv *env, jclass clss, jlong loc_id) { UNUSED(clss); @@ -862,8 +1000,7 @@ done: * Signature: (J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Odisable_1mdc_1flushes - (JNIEnv *env, jclass clss, jlong loc_id) +Java_hdf_hdf5lib_H5_H5Odisable_1mdc_1flushes(JNIEnv *env, jclass clss, jlong loc_id) { UNUSED(clss); @@ -880,8 +1017,7 @@ done: * Signature: (J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Oenable_1mdc_1flushes - (JNIEnv *env, jclass clss, jlong loc_id) +Java_hdf_hdf5lib_H5_H5Oenable_1mdc_1flushes(JNIEnv *env, jclass clss, jlong loc_id) { UNUSED(clss); @@ -898,11 +1034,10 @@ done: * Signature: (J)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Oare_1mdc_1flushes_1disabled - (JNIEnv *env, jclass clss, jlong loc_id) +Java_hdf_hdf5lib_H5_H5Oare_1mdc_1flushes_1disabled(JNIEnv *env, jclass clss, jlong loc_id) { - jboolean bval = JNI_FALSE; - hbool_t is_disabled = FALSE; + jboolean bval = JNI_FALSE; + hbool_t is_disabled = FALSE; UNUSED(clss); @@ -910,14 +1045,12 @@ Java_hdf_hdf5lib_H5_H5Oare_1mdc_1flushes_1disabled H5_LIBRARY_ERROR(ENVONLY); if (is_disabled == TRUE) - bval = JNI_TRUE; + bval = JNI_TRUE; done: return bval; } /* end Java_hdf_hdf5lib_H5_H5Oare_1mdc_1flushes_1disabled */ - - #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ diff --git a/java/src/jni/h5oImp.h b/java/src/jni/h5oImp.h index 5241aba..a7d7f31 100644 --- a/java/src/jni/h5oImp.h +++ b/java/src/jni/h5oImp.h @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -14,223 +13,208 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5_H5O */ -#ifndef _Included_hdf_hdf5lib_H5_H5O -#define _Included_hdf_hdf5lib_H5_H5O +#ifndef Included_hdf_hdf5lib_H5_H5O +#define Included_hdf_hdf5lib_H5_H5O #ifdef __cplusplus extern "C" { #endif /* __cplusplus */ - /* * Class: hdf_hdf5lib_H5 * Method: _H5Oopen * Signature: (JLjava/lang/String;J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Oopen - (JNIEnv*, jclass, jlong, jstring, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Oopen(JNIEnv *, jclass, jlong, jstring, jlong); /* * Class: hdf_hdf5lib_H5 * Method: _H5Oclose * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5__1H5Oclose - (JNIEnv*, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5__1H5Oclose(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Ocopy * Signature: (JLjava/lang/String;JLjava/lang/String;JJ)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Ocopy - (JNIEnv*, jclass, jlong, jstring, jlong, jstring, jlong, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Ocopy(JNIEnv *, jclass, jlong, jstring, jlong, jstring, jlong, + jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Oget_info * Signature: (JI)Lhdf/hdf5lib/structs/H5O_info_t; */ -JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Oget_1info -(JNIEnv*, jclass, jlong, jint fields); +JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Oget_1info(JNIEnv *, jclass, jlong, jint fields); /* * Class: hdf_hdf5lib_H5 * Method: H5Oget_info_by_name * Signature: (JLjava/lang/String;IJ)Lhdf/hdf5lib/structs/H5O_info_t; */ -JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1name -(JNIEnv*, jclass, jlong, jstring, jint fields, jlong); +JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1name(JNIEnv *, jclass, jlong, jstring, + jint fields, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Oget_info_by_idx * Signature: (JLjava/lang/String;IIJIJ)Lhdf/hdf5lib/structs/H5O_info_t; */ -JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1idx -(JNIEnv*, jclass, jlong, jstring, jint, jint, jlong, jint fields, jlong); +JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Oget_1info_1by_1idx(JNIEnv *, jclass, jlong, jstring, jint, + jint, jlong, jint fields, jlong); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Oget_native_info + * Signature: (JI)Lhdf/hdf5lib/structs/H5O_native_info_t; + */ +JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Oget_1native_1info(JNIEnv *, jclass, jlong, jint fields); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Oget_native_info_by_name + * Signature: (JLjava/lang/String;IJ)Lhdf/hdf5lib/structs/H5O_native_info_t; + */ +JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Oget_1native_1info_1by_1name(JNIEnv *, jclass, jlong, jstring, + jint fields, jlong); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Oget_native_info_by_idx + * Signature: (JLjava/lang/String;IIJIJ)Lhdf/hdf5lib/structs/H5O_native_info_t; + */ +JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Oget_1native_1info_1by_1idx(JNIEnv *, jclass, jlong, jstring, + jint, jint, jlong, jint fields, + jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Olink * Signature: (JJLjava/lang/String;JJ)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Olink - (JNIEnv*, jclass, jlong, jlong, jstring, jlong, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Olink(JNIEnv *, jclass, jlong, jlong, jstring, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Ovisit * Signature: (JIILjava/lang/Object;Ljava/lang/Object;I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Ovisit - (JNIEnv*, jclass, jlong, jint, jint, jobject, jobject, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Ovisit(JNIEnv *, jclass, jlong, jint, jint, jobject, jobject, + jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Ovisit_by_name * Signature: (JLjava/lang/String;IILjava/lang/Object;Ljava/lang/Object;IJ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Ovisit_1by_1name - (JNIEnv*, jclass, jlong, jstring, jint, jint, jobject, jobject, jint, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Ovisit_1by_1name(JNIEnv *, jclass, jlong, jstring, jint, jint, + jobject, jobject, jint, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Oset_comment * Signature: (JLjava/lang/String;)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Oset_1comment - (JNIEnv*, jclass, jlong, jstring); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Oset_1comment(JNIEnv *, jclass, jlong, jstring); /* * Class: hdf_hdf5lib_H5 * Method: H5Oset_comment_by_name * Signature: (JLjava/lang/String;Ljava/lang/String;J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Oset_1comment_1by_1name - (JNIEnv*, jclass, jlong, jstring, jstring, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Oset_1comment_1by_1name(JNIEnv *, jclass, jlong, jstring, + jstring, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Oget_comment * Signature: (J)Ljava/lang/String; */ -JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Oget_1comment - (JNIEnv*, jclass, jlong); +JNIEXPORT jstring JNICALL Java_hdf_hdf5lib_H5_H5Oget_1comment(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Oget_comment_by_name * Signature: (JLjava/lang/String;J)Ljava/lang/String; */ -JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Oget_1comment_1by_1name - (JNIEnv*, jclass, jlong, jstring, jlong); +JNIEXPORT jstring JNICALL Java_hdf_hdf5lib_H5_H5Oget_1comment_1by_1name(JNIEnv *, jclass, jlong, jstring, + jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Oexists_by_name * Signature: (JLjava/lang/String;J)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Oexists_1by_1name - (JNIEnv*, jclass, jlong, jstring, jlong); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Oexists_1by_1name(JNIEnv *, jclass, jlong, jstring, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Odecr_refcount * Signature: (J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Odecr_1refcount - (JNIEnv*, jclass, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Odecr_1refcount(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Oincr_refcount * Signature: (J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Oincr_1refcount - (JNIEnv*, jclass, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Oincr_1refcount(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 - * Method: _H5Oopen_by_addr - * Signature: (JJ)J; + * Method: _H5Oopen_by_token + * Signature: (JLhdf/hdf5lib/structs/H5O_token_t;)J; */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Oopen_1by_1addr - (JNIEnv*, jclass, jlong, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Oopen_1by_1token(JNIEnv *, jclass, jlong, jobject); /* * Class: hdf_hdf5lib_H5 * Method: _H5Oopen_by_idx * Signature: (JLjava/lang/String;IIJJ)J; */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Oopen_1by_1idx - (JNIEnv*, jclass, jlong, jstring, jint, jint, jlong, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Oopen_1by_1idx(JNIEnv *, jclass, jlong, jstring, jint, jint, + jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Oflush * Signature: (J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Oflush - (JNIEnv*, jclass, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Oflush(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Orefresh * Signature: (J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Orefresh - (JNIEnv*, jclass, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Orefresh(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Odisable_mdc_flushes * Signature: (J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Odisable_1mdc_1flushes - (JNIEnv*, jclass, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Odisable_1mdc_1flushes(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Oenable_mdc_flushes * Signature: (J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Oenable_1mdc_1flushes - (JNIEnv*, jclass, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Oenable_1mdc_1flushes(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Oare_mdc_flushes_disabled * Signature: (J)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Oare_1mdc_1flushes_1disabled - (JNIEnv*, jclass, jlong); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Oare_1mdc_1flushes_1disabled(JNIEnv *, jclass, jlong); #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5O */ +#endif /* Included_hdf_hdf5lib_H5_H5O */ diff --git a/java/src/jni/h5pACPLImp.c b/java/src/jni/h5pACPLImp.c index f6c14e1..6290e0e 100644 --- a/java/src/jni/h5pACPLImp.c +++ b/java/src/jni/h5pACPLImp.c @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ diff --git a/java/src/jni/h5pACPLImp.h b/java/src/jni/h5pACPLImp.h index 194afc0..15fcf33 100644 --- a/java/src/jni/h5pACPLImp.h +++ b/java/src/jni/h5pACPLImp.h @@ -1,18 +1,17 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#ifndef _Included_hdf_hdf5lib_H5_H5PACPL -#define _Included_hdf_hdf5lib_H5_H5PACPL +#ifndef Included_hdf_hdf5lib_H5_H5PACPL +#define Included_hdf_hdf5lib_H5_H5PACPL #include <jni.h> @@ -24,4 +23,4 @@ extern "C" { } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5PACPL */ +#endif /* Included_hdf_hdf5lib_H5_H5PACPL */ diff --git a/java/src/jni/h5pDAPLImp.c b/java/src/jni/h5pDAPLImp.c index fb39b84..82802b9 100644 --- a/java/src/jni/h5pDAPLImp.c +++ b/java/src/jni/h5pDAPLImp.c @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -44,13 +43,12 @@ static herr_t H5D_append_cb(hid_t dataset_id, hsize_t *cur_dims, void *cb_data); * Signature: (JJJD)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1chunk_1cache - (JNIEnv *env, jclass clss, jlong dapl, jlong rdcc_nslots, - jlong rdcc_nbytes, jdouble rdcc_w0) +Java_hdf_hdf5lib_H5_H5Pset_1chunk_1cache(JNIEnv *env, jclass clss, jlong dapl, jlong rdcc_nslots, + jlong rdcc_nbytes, jdouble rdcc_w0) { UNUSED(clss); - if (H5Pset_chunk_cache((hid_t)dapl, (size_t)rdcc_nslots, (size_t)rdcc_nbytes, (double) rdcc_w0) < 0) + if (H5Pset_chunk_cache((hid_t)dapl, (size_t)rdcc_nslots, (size_t)rdcc_nbytes, (double)rdcc_w0) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -63,37 +61,38 @@ done: * Signature: (J[J[J[D)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1chunk_1cache - (JNIEnv *env, jclass clss, jlong dapl, jlongArray rdcc_nslots, - jlongArray rdcc_nbytes, jdoubleArray rdcc_w0) +Java_hdf_hdf5lib_H5_H5Pget_1chunk_1cache(JNIEnv *env, jclass clss, jlong dapl, jlongArray rdcc_nslots, + jlongArray rdcc_nbytes, jdoubleArray rdcc_w0) { - jboolean isCopy; - jdouble *w0Array = NULL; - jlong *rdcc_nslotsArray = NULL; - jlong *nbytesArray = NULL; - herr_t status = FAIL; + jboolean isCopy; + jdouble *w0Array = NULL; + jlong * rdcc_nslotsArray = NULL; + jlong * nbytesArray = NULL; + herr_t status = FAIL; UNUSED(clss); if (NULL != rdcc_w0) PIN_DOUBLE_ARRAY(ENVONLY, rdcc_w0, w0Array, &isCopy, "H5Pget_chunk_cache: rdcc_w0 array not pinned"); if (NULL != rdcc_nslots) - PIN_LONG_ARRAY(ENVONLY, rdcc_nslots, rdcc_nslotsArray, &isCopy, "H5Pget_chunk_cache: rdcc_nslots array not pinned"); + PIN_LONG_ARRAY(ENVONLY, rdcc_nslots, rdcc_nslotsArray, &isCopy, + "H5Pget_chunk_cache: rdcc_nslots array not pinned"); if (NULL != rdcc_nbytes) - PIN_LONG_ARRAY(ENVONLY, rdcc_nbytes, nbytesArray, &isCopy, "H5Pget_chunk_cache: nbytesArray array not pinned"); + PIN_LONG_ARRAY(ENVONLY, rdcc_nbytes, nbytesArray, &isCopy, + "H5Pget_chunk_cache: nbytesArray array not pinned"); { /* direct cast (size_t *)variable fails on 32-bit environment */ long long rdcc_nslots_temp = *rdcc_nslotsArray; - long long nbytes_temp = *nbytesArray; - size_t rdcc_nslots_t = (size_t) rdcc_nslots_temp; - size_t nbytes_t = (size_t) nbytes_temp; + long long nbytes_temp = *nbytesArray; + size_t rdcc_nslots_t = (size_t)rdcc_nslots_temp; + size_t nbytes_t = (size_t)nbytes_temp; if ((status = H5Pget_chunk_cache((hid_t)dapl, &rdcc_nslots_t, &nbytes_t, (double *)w0Array)) < 0) H5_LIBRARY_ERROR(ENVONLY); *rdcc_nslotsArray = (jlong)rdcc_nslots_t; - *nbytesArray = (jlong)nbytes_t; + *nbytesArray = (jlong)nbytes_t; } /* end direct cast special handling */ done: @@ -111,18 +110,18 @@ done: * Signature: (JLjava/lang/String;)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1efile_1prefix - (JNIEnv *env, jclass clss, jlong dapl_id, jstring prefix) +Java_hdf_hdf5lib_H5_H5Pset_1efile_1prefix(JNIEnv *env, jclass clss, jlong dapl_id, jstring prefix) { const char *extFilePrefix = NULL; - herr_t retVal = FAIL; + herr_t retVal = FAIL; UNUSED(clss); if (NULL == prefix) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pset_efile_prefix: external file prefix is NULL"); - PIN_JAVA_STRING(ENVONLY, prefix, extFilePrefix, NULL, "H5Pset_efile_prefix: external file prefix not pinned"); + PIN_JAVA_STRING(ENVONLY, prefix, extFilePrefix, NULL, + "H5Pset_efile_prefix: external file prefix not pinned"); if ((retVal = H5Pset_efile_prefix((hid_t)dapl_id, extFilePrefix)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -138,20 +137,19 @@ done: * Signature: (J)Ljava/lang/String; */ JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1efile_1prefix - (JNIEnv *env, jclass clss, jlong dapl_id) +Java_hdf_hdf5lib_H5_H5Pget_1efile_1prefix(JNIEnv *env, jclass clss, jlong dapl_id) { - ssize_t prefix_size = -1; - char *pre = NULL; - jstring str = NULL; + ssize_t prefix_size = -1; + char * pre = NULL; + jstring str = NULL; UNUSED(clss); if ((prefix_size = H5Pget_efile_prefix((hid_t)dapl_id, (char *)NULL, 0)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (NULL == (pre = (char *) HDmalloc(sizeof(char) * (size_t)prefix_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_efile_prefix: memory allocation failed"); + if (NULL == (pre = (char *)HDmalloc(sizeof(char) * (size_t)prefix_size + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_efile_prefix: memory allocation failed"); if (H5Pget_efile_prefix((hid_t)dapl_id, (char *)pre, (size_t)prefix_size + 1) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -159,7 +157,8 @@ Java_hdf_hdf5lib_H5_H5Pget_1efile_1prefix if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, pre))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_efile_prefix: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, "H5Pget_efile_prefix: out of memory - unable to construct string from UTF characters"); } done: @@ -175,11 +174,11 @@ done: * Signature: (JI[JLjava/lang/Object;Ljava/lang/Object;)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1append_1flush - (JNIEnv *env, jclass clss, jlong plist_id, jint ndims, jlongArray boundary, jobject callback_op, jobject op_data) +Java_hdf_hdf5lib_H5_H5Pset_1append_1flush(JNIEnv *env, jclass clss, jlong plist_id, jint ndims, + jlongArray boundary, jobject callback_op, jobject op_data) { - cb_wrapper wrapper = { callback_op, op_data }; - herr_t status = FAIL; + cb_wrapper wrapper = {callback_op, op_data}; + herr_t status = FAIL; UNUSED(clss); @@ -191,7 +190,8 @@ Java_hdf_hdf5lib_H5_H5Pset_1append_1flush if (NULL == callback_op) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pset_append_flush: callback_op is NULL"); - if ((status = H5Pset_append_flush((hid_t)plist_id, (unsigned)ndims, (const hsize_t *)boundary, (H5D_append_cb_t)H5D_append_cb, (void *)&wrapper)) < 0) + if ((status = H5Pset_append_flush((hid_t)plist_id, (unsigned)ndims, (const hsize_t *)boundary, + (H5D_append_cb_t)H5D_append_cb, (void *)&wrapper)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -208,8 +208,7 @@ done: * Signature: (JI)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1virtual_1view - (JNIEnv *env, jclass clss, jlong dapl_id, jint view) +Java_hdf_hdf5lib_H5_H5Pset_1virtual_1view(JNIEnv *env, jclass clss, jlong dapl_id, jint view) { UNUSED(clss); @@ -226,8 +225,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1virtual_1view - (JNIEnv *env, jclass clss, jlong dapl_id) +Java_hdf_hdf5lib_H5_H5Pget_1virtual_1view(JNIEnv *env, jclass clss, jlong dapl_id) { H5D_vds_view_t virtual_view = H5D_VDS_ERROR; @@ -246,8 +244,7 @@ done: * Signature: (JJ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1virtual_1printf_1gap - (JNIEnv *env, jclass clss, jlong dapl_id, jlong gap_size) +Java_hdf_hdf5lib_H5_H5Pset_1virtual_1printf_1gap(JNIEnv *env, jclass clss, jlong dapl_id, jlong gap_size) { UNUSED(clss); @@ -264,8 +261,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1virtual_1printf_1gap - (JNIEnv *env, jclass clss, jlong dapl_id) +Java_hdf_hdf5lib_H5_H5Pget_1virtual_1printf_1gap(JNIEnv *env, jclass clss, jlong dapl_id) { hsize_t gap_size = 0; @@ -279,17 +275,16 @@ done: } /* end Java_hdf_hdf5lib_H5_H5Pget_1virtual_1printf_1gap */ static herr_t -H5D_append_cb - (hid_t dataset_id, hsize_t *cur_dims, void *cb_data) +H5D_append_cb(hid_t dataset_id, hsize_t *cur_dims, void *cb_data) { cb_wrapper *wrapper = (cb_wrapper *)cb_data; jlongArray cur_dimsArray; jmethodID mid; jobject visit_callback = wrapper->visit_callback; jclass cls; - JNIEnv *cbenv = NULL; - void *op_data = (void *)wrapper->op_data; - jint status = -1; + JNIEnv * cbenv = NULL; + void * op_data = (void *)wrapper->op_data; + jint status = -1; if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) { CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE); @@ -299,7 +294,8 @@ H5D_append_cb if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(J[JLhdf/hdf5lib/callbacks/H5D_append_t;)I"))) + if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", + "(J[JLhdf/hdf5lib/callbacks/H5D_append_t;)I"))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); if (NULL != cur_dims) { diff --git a/java/src/jni/h5pDAPLImp.h b/java/src/jni/h5pDAPLImp.h index a9fbadd..bf11fef 100644 --- a/java/src/jni/h5pDAPLImp.h +++ b/java/src/jni/h5pDAPLImp.h @@ -1,18 +1,17 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#ifndef _Included_hdf_hdf5lib_H5_H5PDAPL -#define _Included_hdf_hdf5lib_H5_H5PDAPL +#ifndef Included_hdf_hdf5lib_H5_H5PDAPL +#define Included_hdf_hdf5lib_H5_H5PDAPL #include <jni.h> @@ -25,45 +24,38 @@ extern "C" { * Method: H5Pset_chunk_cache * Signature: (JJJD)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1chunk_1cache -(JNIEnv *, jclass, jlong, jlong, jlong, jdouble); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1chunk_1cache(JNIEnv *, jclass, jlong, jlong, jlong, + jdouble); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_chunk_cache * Signature: (J[J[J[D)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1chunk_1cache -(JNIEnv *, jclass, jlong, jlongArray, jlongArray, jdoubleArray); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pget_1chunk_1cache(JNIEnv *, jclass, jlong, jlongArray, + jlongArray, jdoubleArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_efile_prefix * Signature: (JLjava/lang/String;)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1efile_1prefix -(JNIEnv *, jclass, jlong, jstring); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1efile_1prefix(JNIEnv *, jclass, jlong, jstring); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_efile_prefix * Signature: (J)Ljava/lang/String; */ -JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1efile_1prefix -(JNIEnv *, jclass, jlong); +JNIEXPORT jstring JNICALL Java_hdf_hdf5lib_H5_H5Pget_1efile_1prefix(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_append_flush * Signature: (JI[JLjava/lang/Object;Ljava/lang/Object;)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1append_1flush - (JNIEnv*, jclass, jlong, jint, jlongArray, jobject, jobject); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1append_1flush(JNIEnv *, jclass, jlong, jint, jlongArray, + jobject, jobject); /* * TODO: H5Pget_append_flush @@ -74,39 +66,31 @@ Java_hdf_hdf5lib_H5_H5Pset_1append_1flush * Method: H5Pset_virtual_view * Signature: (JI)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1virtual_1view -(JNIEnv *, jclass, jlong, jint); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1virtual_1view(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_virtual_view * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1virtual_1view -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1virtual_1view(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_virtual_printf_gap * Signature: (JJ)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1virtual_1printf_1gap -(JNIEnv *, jclass, jlong, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1virtual_1printf_1gap(JNIEnv *, jclass, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_virtual_printf_gap * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1virtual_1printf_1gap -(JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Pget_1virtual_1printf_1gap(JNIEnv *, jclass, jlong); #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5PDAPL */ +#endif /* Included_hdf_hdf5lib_H5_H5PDAPL */ diff --git a/java/src/jni/h5pDCPLImp.c b/java/src/jni/h5pDCPLImp.c index 7559c3b..760a5a8 100644 --- a/java/src/jni/h5pDCPLImp.c +++ b/java/src/jni/h5pDCPLImp.c @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -37,8 +36,7 @@ extern "C" { * Signature: (JI)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1layout - (JNIEnv *env, jclass clss, jlong plist, jint layout) +Java_hdf_hdf5lib_H5_H5Pset_1layout(JNIEnv *env, jclass clss, jlong plist, jint layout) { herr_t retVal = FAIL; @@ -57,8 +55,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1layout - (JNIEnv *env, jclass clss, jlong plist) +Java_hdf_hdf5lib_H5_H5Pget_1layout(JNIEnv *env, jclass clss, jlong plist) { H5D_layout_t retVal = H5D_LAYOUT_ERROR; @@ -77,18 +74,17 @@ done: * Signature: (JI[B)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1chunk - (JNIEnv *env, jclass clss, jlong plist, jint ndims, jbyteArray dim) +Java_hdf_hdf5lib_H5_H5Pset_1chunk(JNIEnv *env, jclass clss, jlong plist, jint ndims, jbyteArray dim) { - jboolean isCopy; - hsize_t *da = NULL; - hsize_t *lp = NULL; - size_t i; - size_t rank; - jsize arrLen; - jbyte *theArray = NULL; - jlong *jlp = NULL; - herr_t status = FAIL; + jboolean isCopy; + hsize_t *da = NULL; + hsize_t *lp = NULL; + size_t i; + size_t rank; + jsize arrLen; + jbyte * theArray = NULL; + jlong * jlp = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -102,14 +98,14 @@ Java_hdf_hdf5lib_H5_H5Pset_1chunk H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_chunk: dim array length < 0"); } - rank = (size_t) arrLen / sizeof(jlong); - if (rank < (size_t) ndims) + rank = (size_t)arrLen / sizeof(jlong); + if (rank < (size_t)ndims) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_chunk: dims array rank < ndims"); PIN_BYTE_ARRAY(ENVONLY, dim, theArray, &isCopy, "H5Pset_chunk: dim array not pinned"); - if (NULL == (da = lp = (hsize_t *) HDmalloc(rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pset_chunk: memory allocation failed"); + if (NULL == (da = lp = (hsize_t *)HDmalloc(rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pset_chunk: memory allocation failed"); jlp = (jlong *)theArray; for (i = 0; i < rank; i++) { @@ -136,15 +132,14 @@ done: * Signature: (JI[J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1chunk - (JNIEnv *env, jclass clss, jlong plist, jint max_ndims, jlongArray dims) +Java_hdf_hdf5lib_H5_H5Pget_1chunk(JNIEnv *env, jclass clss, jlong plist, jint max_ndims, jlongArray dims) { - jboolean isCopy; - hsize_t *da = NULL; - jlong *theArray = NULL; - jsize arrLen; - int i; - herr_t status = FAIL; + jboolean isCopy; + hsize_t *da = NULL; + jlong * theArray = NULL; + jsize arrLen; + int i; + herr_t status = FAIL; UNUSED(clss); @@ -160,8 +155,8 @@ Java_hdf_hdf5lib_H5_H5Pget_1chunk PIN_LONG_ARRAY(ENVONLY, dims, theArray, &isCopy, "H5Pget_chunk: input dims not pinned"); - if (NULL == (da = (hsize_t *) HDmalloc((size_t)max_ndims * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_chunk: memory allocation failed"); + if (NULL == (da = (hsize_t *)HDmalloc((size_t)max_ndims * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_chunk: memory allocation failed"); if ((status = H5Pget_chunk((hid_t)plist, (int)max_ndims, da)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -184,8 +179,7 @@ done: * Signature: (JI)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1chunk_1opts - (JNIEnv *env, jclass clss, jlong dcpl_id, jint opts) +Java_hdf_hdf5lib_H5_H5Pset_1chunk_1opts(JNIEnv *env, jclass clss, jlong dcpl_id, jint opts) { herr_t retVal = FAIL; @@ -204,8 +198,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1chunk_1opts - (JNIEnv *env, jclass clss, jlong dcpl_id) +Java_hdf_hdf5lib_H5_H5Pget_1chunk_1opts(JNIEnv *env, jclass clss, jlong dcpl_id) { unsigned opts = 0; @@ -224,8 +217,7 @@ done: * Signature: (JZ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1dset_1no_1attrs_1hint -(JNIEnv *env, jclass clss, jlong dcpl_id, jboolean minimize) +Java_hdf_hdf5lib_H5_H5Pset_1dset_1no_1attrs_1hint(JNIEnv *env, jclass clss, jlong dcpl_id, jboolean minimize) { hbool_t minimize_val; herr_t retVal = FAIL; @@ -247,11 +239,10 @@ done: * Signature: (J)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1dset_1no_1attrs_1hint -(JNIEnv *env, jclass clss, jlong dcpl_id) +Java_hdf_hdf5lib_H5_H5Pget_1dset_1no_1attrs_1hint(JNIEnv *env, jclass clss, jlong dcpl_id) { hbool_t minimize = FALSE; - jboolean bval = JNI_FALSE; + jboolean bval = JNI_FALSE; UNUSED(clss); @@ -271,8 +262,7 @@ done: * Signature: (JI)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1deflate - (JNIEnv *env, jclass clss, jlong plist, jint level) +Java_hdf_hdf5lib_H5_H5Pset_1deflate(JNIEnv *env, jclass clss, jlong plist, jint level) { herr_t retVal = FAIL; @@ -291,12 +281,12 @@ done: * Signature: (JJ[B)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fill_1value - (JNIEnv *env, jclass clss, jlong plist_id, jlong type_id, jbyteArray value) +Java_hdf_hdf5lib_H5_H5Pset_1fill_1value(JNIEnv *env, jclass clss, jlong plist_id, jlong type_id, + jbyteArray value) { - jboolean isCopy; - jbyte *byteP = NULL; - herr_t status = FAIL; + jboolean isCopy; + jbyte * byteP = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -324,12 +314,12 @@ done: * Signature: (JJ[B)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1fill_1value - (JNIEnv *env, jclass clss, jlong plist_id, jlong type_id, jbyteArray value) +Java_hdf_hdf5lib_H5_H5Pget_1fill_1value(JNIEnv *env, jclass clss, jlong plist_id, jlong type_id, + jbyteArray value) { - jboolean isCopy; - herr_t status = FAIL; - jbyte *byteP = NULL; + jboolean isCopy; + herr_t status = FAIL; + jbyte * byteP = NULL; UNUSED(clss); @@ -354,13 +344,12 @@ done: * Signature: (J[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pfill_1value_1defined - (JNIEnv *env, jclass clss, jlong plist, jintArray status) +Java_hdf_hdf5lib_H5_H5Pfill_1value_1defined(JNIEnv *env, jclass clss, jlong plist, jintArray status) { - H5D_fill_value_t value = H5D_FILL_VALUE_ERROR; - jboolean isCopy; - jint *theArray = NULL; - herr_t retVal = FAIL; + H5D_fill_value_t value = H5D_FILL_VALUE_ERROR; + jboolean isCopy; + jint * theArray = NULL; + herr_t retVal = FAIL; UNUSED(clss); @@ -387,8 +376,7 @@ done: * Signature: (JI)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fill_1time - (JNIEnv *env, jclass clss, jlong plist, jint fill_time) +Java_hdf_hdf5lib_H5_H5Pset_1fill_1time(JNIEnv *env, jclass clss, jlong plist, jint fill_time) { herr_t retVal = FAIL; @@ -407,13 +395,12 @@ done: * Signature: (J[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1fill_1time - (JNIEnv *env, jclass clss, jlong plist, jintArray fill_time) +Java_hdf_hdf5lib_H5_H5Pget_1fill_1time(JNIEnv *env, jclass clss, jlong plist, jintArray fill_time) { - H5D_fill_time_t time = H5D_FILL_TIME_ERROR; - jboolean isCopy; - jint *theArray = NULL; - herr_t retVal = FAIL; + H5D_fill_time_t time = H5D_FILL_TIME_ERROR; + jboolean isCopy; + jint * theArray = NULL; + herr_t retVal = FAIL; UNUSED(clss); @@ -440,8 +427,7 @@ done: * Signature: (JI)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1alloc_1time - (JNIEnv *env, jclass clss, jlong plist, jint alloc_time) +Java_hdf_hdf5lib_H5_H5Pset_1alloc_1time(JNIEnv *env, jclass clss, jlong plist, jint alloc_time) { herr_t retVal = FAIL; @@ -460,13 +446,12 @@ done: * Signature: (J[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1alloc_1time - (JNIEnv *env, jclass clss, jlong plist, jintArray alloc_time) +Java_hdf_hdf5lib_H5_H5Pget_1alloc_1time(JNIEnv *env, jclass clss, jlong plist, jintArray alloc_time) { - H5D_alloc_time_t time = H5D_ALLOC_TIME_ERROR; - jboolean isCopy; - jint *theArray = NULL; - herr_t retVal = FAIL; + H5D_alloc_time_t time = H5D_ALLOC_TIME_ERROR; + jboolean isCopy; + jint * theArray = NULL; + herr_t retVal = FAIL; UNUSED(clss); @@ -475,7 +460,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1alloc_1time PIN_INT_ARRAY(ENVONLY, alloc_time, theArray, &isCopy, "H5Pget_alloc_time: alloc_time not pinned"); - if ((retVal = H5Pget_alloc_time((hid_t)plist, &time)) < 0) + if ((retVal = H5Pget_alloc_time((hid_t)plist, &time)) < 0) H5_LIBRARY_ERROR(ENVONLY); theArray[0] = time; @@ -493,26 +478,25 @@ done: * Signature: (JIIJ[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1filter - (JNIEnv *env, jclass clss, jlong plist, jint filter, jint flags, - jlong cd_nelmts, jintArray cd_values) +Java_hdf_hdf5lib_H5_H5Pset_1filter(JNIEnv *env, jclass clss, jlong plist, jint filter, jint flags, + jlong cd_nelmts, jintArray cd_values) { - jboolean isCopy; - jint *theArray = NULL; - herr_t status = FAIL; + jboolean isCopy; + jint * theArray = NULL; + herr_t status = FAIL; UNUSED(clss); if (NULL == cd_values) { - if ((status = H5Pset_filter((hid_t)plist, (H5Z_filter_t)filter, - (unsigned int)flags, (size_t)cd_nelmts, NULL)) < 0) + if ((status = H5Pset_filter((hid_t)plist, (H5Z_filter_t)filter, (unsigned int)flags, + (size_t)cd_nelmts, NULL)) < 0) H5_LIBRARY_ERROR(ENVONLY); } else { PIN_INT_ARRAY(ENVONLY, cd_values, theArray, &isCopy, "H5Pset_filter: input array not pinned"); - if ((status = H5Pset_filter((hid_t)plist, (H5Z_filter_t)filter, - (unsigned int)flags, (size_t)cd_nelmts, (const unsigned int *)theArray)) < 0) + if ((status = H5Pset_filter((hid_t)plist, (H5Z_filter_t)filter, (unsigned int)flags, + (size_t)cd_nelmts, (const unsigned int *)theArray)) < 0) H5_LIBRARY_ERROR(ENVONLY); } @@ -529,8 +513,7 @@ done: * Signature: (J)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Pall_1filters_1avail - (JNIEnv *env, jclass clss, jlong dcpl_id) +Java_hdf_hdf5lib_H5_H5Pall_1filters_1avail(JNIEnv *env, jclass clss, jlong dcpl_id) { htri_t bval = JNI_FALSE; @@ -551,8 +534,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1nfilters - (JNIEnv *env, jclass clss, jlong plist) +Java_hdf_hdf5lib_H5_H5Pget_1nfilters(JNIEnv *env, jclass clss, jlong plist) { int retVal = -1; @@ -571,17 +553,17 @@ done: * Signature: (JI[I[J[IJ[Ljava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1filter - (JNIEnv *env, jclass clss, jlong plist, jint filter_number, jintArray flags, - jlongArray cd_nelmts, jintArray cd_values, jlong namelen, jobjectArray name) +Java_hdf_hdf5lib_H5_H5Pget_1filter(JNIEnv *env, jclass clss, jlong plist, jint filter_number, jintArray flags, + jlongArray cd_nelmts, jintArray cd_values, jlong namelen, + jobjectArray name) { - jboolean isCopy; - jstring str; - jint *flagsArray = NULL; - jlong *cd_nelmtsArray = NULL; - jint *cd_valuesArray = NULL; - char *filter = NULL; - herr_t status = FAIL; + jboolean isCopy; + jstring str; + jint * flagsArray = NULL; + jlong * cd_nelmtsArray = NULL; + jint * cd_valuesArray = NULL; + char * filter = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -594,23 +576,22 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter if (NULL == cd_values) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter: cd_values is NULL"); - if (NULL == (filter = (char *) HDmalloc(sizeof(char) * (size_t)namelen))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter: memory allocation failed"); + if (NULL == (filter = (char *)HDmalloc(sizeof(char) * (size_t)namelen))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_filter: memory allocation failed"); PIN_INT_ARRAY(ENVONLY, flags, flagsArray, &isCopy, "H5Pget_filter: flags array not pinned"); PIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, &isCopy, "H5Pget_filter: nelmts array not pinned"); PIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesArray, &isCopy, "H5Pget_filter: elmts array not pinned"); - /* direct cast (size_t *)variable fails on 32-bit environment */ { unsigned int filter_config; long long cd_nelmts_temp = *cd_nelmtsArray; - size_t cd_nelmts_t = (size_t) cd_nelmts_temp; + size_t cd_nelmts_t = (size_t)cd_nelmts_temp; - if ((status = H5Pget_filter2((hid_t)plist, (unsigned)filter_number, - (unsigned int *)flagsArray, &cd_nelmts_t, (unsigned int *)cd_valuesArray, - (size_t)namelen, filter, &filter_config)) < 0) + if ((status = H5Pget_filter2((hid_t)plist, (unsigned)filter_number, (unsigned int *)flagsArray, + &cd_nelmts_t, (unsigned int *)cd_valuesArray, (size_t)namelen, filter, + &filter_config)) < 0) H5_LIBRARY_ERROR(ENVONLY); filter[namelen - 1] = '\0'; @@ -620,7 +601,8 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, filter))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, "H5Pget_filter: out of memory - unable to construct string from UTF characters"); } ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, (jobject)str); @@ -632,7 +614,7 @@ done: if (cd_nelmtsArray) UNPIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, (status < 0) ? JNI_ABORT : 0); if (flagsArray) - UNPIN_INT_ARRAY(ENVONLY, flags, flagsArray, (status < 0) ? JNI_ABORT : 0) + UNPIN_INT_ARRAY(ENVONLY, flags, flagsArray, (status < 0) ? JNI_ABORT : 0); if (filter) HDfree(filter); @@ -645,19 +627,18 @@ done: * Signature: (JI[I[J[IJ[Ljava/lang/String;[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1filter2 - (JNIEnv *env, jclass clss, jlong plist, jint filter_number, - jintArray flags, jlongArray cd_nelmts, jintArray cd_values, jlong namelen, - jobjectArray name, jintArray filter_config) +Java_hdf_hdf5lib_H5_H5Pget_1filter2(JNIEnv *env, jclass clss, jlong plist, jint filter_number, + jintArray flags, jlongArray cd_nelmts, jintArray cd_values, jlong namelen, + jobjectArray name, jintArray filter_config) { - jboolean isCopy; - jstring str; - jint *flagsArray = NULL; - jlong *cd_nelmtsArray = NULL; - jint *cd_valuesArray = NULL; - jint *filter_configArray = NULL; - char *filter = NULL; - herr_t status = FAIL; + jboolean isCopy; + jstring str; + jint * flagsArray = NULL; + jlong * cd_nelmtsArray = NULL; + jint * cd_valuesArray = NULL; + jint * filter_configArray = NULL; + char * filter = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -670,21 +651,22 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter2 if (NULL == filter_config) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter2: filter_config is NULL"); - if (NULL == (filter = (char *) HDmalloc(sizeof(char) * (size_t)namelen))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter2: memory allocation failed"); + if (NULL == (filter = (char *)HDmalloc(sizeof(char) * (size_t)namelen))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_filter2: memory allocation failed"); PIN_INT_ARRAY(ENVONLY, flags, flagsArray, &isCopy, "H5Pget_filter2: flags array not pinned"); PIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, &isCopy, "H5Pget_filter2: nelmts array not pinned"); - PIN_INT_ARRAY(ENVONLY, filter_config, filter_configArray, &isCopy, "H5Pget_filter2: filter_config array not pinned"); + PIN_INT_ARRAY(ENVONLY, filter_config, filter_configArray, &isCopy, + "H5Pget_filter2: filter_config array not pinned"); if (NULL == cd_values && *cd_nelmtsArray == 0) { /* direct cast (size_t *)variable fails on 32-bit environment */ long long cd_nelmts_temp = 0; - size_t cd_nelmts_t = (size_t) cd_nelmts_temp; + size_t cd_nelmts_t = (size_t)cd_nelmts_temp; - if ((status = H5Pget_filter2((hid_t)plist, (unsigned)filter_number, - (unsigned int *)flagsArray, &cd_nelmts_t, NULL, - (size_t)namelen, filter, (unsigned int *)filter_configArray)) < 0) + if ((status = H5Pget_filter2((hid_t)plist, (unsigned)filter_number, (unsigned int *)flagsArray, + &cd_nelmts_t, NULL, (size_t)namelen, filter, + (unsigned int *)filter_configArray)) < 0) H5_LIBRARY_ERROR(ENVONLY); filter[namelen - 1] = '\0'; @@ -700,11 +682,11 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter2 { /* direct cast (size_t *)variable fails on 32-bit environment */ long long cd_nelmts_temp = *cd_nelmtsArray; - size_t cd_nelmts_t = (size_t) cd_nelmts_temp; + size_t cd_nelmts_t = (size_t)cd_nelmts_temp; - if ((status = H5Pget_filter2((hid_t)plist, (unsigned)filter_number, - (unsigned int *)flagsArray, &cd_nelmts_t, (unsigned int *)cd_valuesArray, - (size_t)namelen, filter, (unsigned int *)filter_configArray)) < 0) + if ((status = H5Pget_filter2((hid_t)plist, (unsigned)filter_number, (unsigned int *)flagsArray, + &cd_nelmts_t, (unsigned int *)cd_valuesArray, (size_t)namelen, + filter, (unsigned int *)filter_configArray)) < 0) H5_LIBRARY_ERROR(ENVONLY); filter[namelen - 1] = '\0'; @@ -715,7 +697,8 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter2 if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, filter))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter2: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, "H5Pget_filter2: out of memory - unable to construct string from UTF characters"); } ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, (jobject)str); @@ -742,19 +725,19 @@ done: * Signature: (JI[I[J[IJ[Ljava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id - (JNIEnv *env, jclass clss, jlong plist, jint filter, - jintArray flags, jlongArray cd_nelmts, jintArray cd_values, jlong namelen, jobjectArray name) +Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id(JNIEnv *env, jclass clss, jlong plist, jint filter, + jintArray flags, jlongArray cd_nelmts, jintArray cd_values, + jlong namelen, jobjectArray name) { - jboolean isCopy; - jstring str; - jlong *cd_nelmtsArray = NULL; - jint *cd_valuesArray = NULL; - jint *flagsArray = NULL; - char *aName = NULL; - long bs; - int rank; - herr_t status = FAIL; + jboolean isCopy; + jstring str; + jlong * cd_nelmtsArray = NULL; + jint * cd_valuesArray = NULL; + jint * flagsArray = NULL; + char * aName = NULL; + long bs; + int rank; + herr_t status = FAIL; UNUSED(clss); @@ -771,12 +754,13 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id if (NULL == name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id: name is NULL"); - if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)bs))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter_by_id: memory allocation failed"); + if (NULL == (aName = (char *)HDmalloc(sizeof(char) * (size_t)bs))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_filter_by_id: memory allocation failed"); PIN_INT_ARRAY(ENVONLY, flags, flagsArray, &isCopy, "H5Pget_filter_by_id: flags not pinned"); PIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, &isCopy, "H5Pget_filter_by_id: cd_nelms not pinned"); - PIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesArray, &isCopy, "H5Pget_filter_by_id: cd_values array not pinned"); + PIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesArray, &isCopy, + "H5Pget_filter_by_id: cd_values array not pinned"); if ((rank = ENVPTR->GetArrayLength(ENVONLY, cd_values)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); @@ -787,11 +771,11 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id /* direct cast (size_t *)variable fails on 32-bit environment */ unsigned int filter_config; long long cd_nelmts_temp = *cd_nelmtsArray; - size_t cd_nelmts_t = (size_t) cd_nelmts_temp; + size_t cd_nelmts_t = (size_t)cd_nelmts_temp; - if ((status = H5Pget_filter_by_id2((hid_t)plist, (H5Z_filter_t)filter, - (unsigned int *)flagsArray, &cd_nelmts_t, (unsigned int *)cd_valuesArray, - (size_t)namelen, (char *)aName, &filter_config)) < 0) + if ((status = H5Pget_filter_by_id2((hid_t)plist, (H5Z_filter_t)filter, (unsigned int *)flagsArray, + &cd_nelmts_t, (unsigned int *)cd_valuesArray, (size_t)namelen, + (char *)aName, &filter_config)) < 0) H5_LIBRARY_ERROR(ENVONLY); aName[bs - 1] = '\0'; @@ -801,7 +785,8 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, aName))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter_by_id: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, "H5Pget_filter_by_id: out of memory - unable to construct string from UTF characters"); } ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, (jobject)str); @@ -826,19 +811,19 @@ done: * Signature: (JI[I[J[IJ[Ljava/lang/String;[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2 - (JNIEnv *env, jclass clss, jlong plist, jint filter, - jintArray flags, jlongArray cd_nelmts, jintArray cd_values, jlong namelen, jobjectArray name, jintArray filter_config) +Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2(JNIEnv *env, jclass clss, jlong plist, jint filter, + jintArray flags, jlongArray cd_nelmts, jintArray cd_values, + jlong namelen, jobjectArray name, jintArray filter_config) { - jboolean isCopy; - jstring str; - jlong *cd_nelmtsArray = NULL; - jint *cd_valuesArray = NULL; - jint *flagsArray = NULL; - jint *filter_configArray = NULL; - long bs; - char *aName = NULL; - herr_t status = FAIL; + jboolean isCopy; + jstring str; + jlong * cd_nelmtsArray = NULL; + jint * cd_valuesArray = NULL; + jint * flagsArray = NULL; + jint * filter_configArray = NULL; + long bs; + char * aName = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -857,22 +842,24 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2 if (NULL == filter_config) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_filter_by_id2: filter_config is NULL"); - if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)bs))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter_by_id2: memory allocation failed"); + if (NULL == (aName = (char *)HDmalloc(sizeof(char) * (size_t)bs))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_filter_by_id2: memory allocation failed"); PIN_INT_ARRAY(ENVONLY, flags, flagsArray, &isCopy, "H5Pget_filter_by_id2: flags not pinned"); PIN_LONG_ARRAY(ENVONLY, cd_nelmts, cd_nelmtsArray, &isCopy, "H5Pget_filter_by_id2: cd_nelms not pinned"); - PIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesArray, &isCopy, "H5Pget_filter_by_id2: cd_values array not pinned"); - PIN_INT_ARRAY(ENVONLY, filter_config, filter_configArray, &isCopy, "H5Pget_filter_by_id2: filter_config not pinned"); + PIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesArray, &isCopy, + "H5Pget_filter_by_id2: cd_values array not pinned"); + PIN_INT_ARRAY(ENVONLY, filter_config, filter_configArray, &isCopy, + "H5Pget_filter_by_id2: filter_config not pinned"); { /* direct cast (size_t *)variable fails on 32-bit environment */ long long cd_nelmts_temp = *cd_nelmtsArray; - size_t cd_nelmts_t = (size_t) cd_nelmts_temp; + size_t cd_nelmts_t = (size_t)cd_nelmts_temp; - if ((status = H5Pget_filter_by_id2((hid_t)plist, (H5Z_filter_t)filter, - (unsigned int *)flagsArray, &cd_nelmts_t, (unsigned int *)cd_valuesArray, - (size_t)namelen, (char *)aName, (unsigned int *)filter_configArray)) < 0) + if ((status = H5Pget_filter_by_id2((hid_t)plist, (H5Z_filter_t)filter, (unsigned int *)flagsArray, + &cd_nelmts_t, (unsigned int *)cd_valuesArray, (size_t)namelen, + (char *)aName, (unsigned int *)filter_configArray)) < 0) H5_LIBRARY_ERROR(ENVONLY); aName[bs - 1] = '\0'; @@ -882,7 +869,8 @@ Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2 if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, aName))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_filter_by_id2: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, "H5Pget_filter_by_id2: out of memory - unable to construct string from UTF characters"); } ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, (jobject)str); @@ -909,13 +897,12 @@ done: * Signature: (JIIJ[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pmodify_1filter - (JNIEnv *env, jclass clss, jlong plist, jint filter, - jint flags, jlong cd_nelmts, jintArray cd_values) +Java_hdf_hdf5lib_H5_H5Pmodify_1filter(JNIEnv *env, jclass clss, jlong plist, jint filter, jint flags, + jlong cd_nelmts, jintArray cd_values) { - jboolean isCopy; - jint *cd_valuesP = NULL; - herr_t status = FAIL; + jboolean isCopy; + jint * cd_valuesP = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -925,7 +912,7 @@ Java_hdf_hdf5lib_H5_H5Pmodify_1filter PIN_INT_ARRAY(ENVONLY, cd_values, cd_valuesP, &isCopy, "H5Pmodify_filter: cd_values not pinned"); if ((status = H5Pmodify_filter((hid_t)plist, (H5Z_filter_t)filter, (const unsigned int)flags, - (size_t)cd_nelmts, (unsigned int *)cd_valuesP)) < 0) + (size_t)cd_nelmts, (unsigned int *)cd_valuesP)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -941,8 +928,7 @@ done: * Signature: (JI)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5P1remove_1filter - (JNIEnv *env, jclass clss, jlong obj_id, jint filter) +Java_hdf_hdf5lib_H5_H5P1remove_1filter(JNIEnv *env, jclass clss, jlong obj_id, jint filter) { herr_t status = FAIL; @@ -961,8 +947,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fletcher32 - (JNIEnv *env, jclass clss, jlong plist) +Java_hdf_hdf5lib_H5_H5Pset_1fletcher32(JNIEnv *env, jclass clss, jlong plist) { herr_t retVal = FAIL; @@ -981,8 +966,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1nbit - (JNIEnv *env, jclass clss, jlong plist_id) +Java_hdf_hdf5lib_H5_H5Pset_1nbit(JNIEnv *env, jclass clss, jlong plist_id) { herr_t retVal = FAIL; @@ -1001,8 +985,8 @@ done: * Signature: (JII)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1scaleoffset - (JNIEnv *env, jclass clss, jlong plist_id, jint scale_type, jint scale_factor) +Java_hdf_hdf5lib_H5_H5Pset_1scaleoffset(JNIEnv *env, jclass clss, jlong plist_id, jint scale_type, + jint scale_factor) { herr_t retVal = FAIL; @@ -1026,8 +1010,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1shuffle - (JNIEnv *env, jclass clss, jlong plist) +Java_hdf_hdf5lib_H5_H5Pset_1shuffle(JNIEnv *env, jclass clss, jlong plist) { herr_t retVal = FAIL; @@ -1046,8 +1029,8 @@ done: * Signature: (JII)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1szip - (JNIEnv *env, jclass clss, jlong plist, jint options_mask, jint pixels_per_block) +Java_hdf_hdf5lib_H5_H5Pset_1szip(JNIEnv *env, jclass clss, jlong plist, jint options_mask, + jint pixels_per_block) { herr_t retVal = FAIL; @@ -1066,11 +1049,11 @@ done: * Signature: (JLjava/lang/String;JJ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1external - (JNIEnv *env, jclass clss, jlong plist, jstring name, jlong offset, jlong size) +Java_hdf_hdf5lib_H5_H5Pset_1external(JNIEnv *env, jclass clss, jlong plist, jstring name, jlong offset, + jlong size) { const char *fileName = NULL; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -1095,18 +1078,17 @@ done: * Signature: (JIJ[Ljava/lang/String;[J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1external - (JNIEnv *env, jclass clss, jlong plist, jint idx, jlong name_size, - jobjectArray name, jlongArray size) +Java_hdf_hdf5lib_H5_H5Pget_1external(JNIEnv *env, jclass clss, jlong plist, jint idx, jlong name_size, + jobjectArray name, jlongArray size) { - jboolean isCopy; - jstring str; - hsize_t s; - off_t o; - jsize arrLen; - jlong *theArray = NULL; - char *file = NULL; - herr_t status = FAIL; + jboolean isCopy; + jstring str; + hsize_t s; + off_t o; + jsize arrLen; + jlong * theArray = NULL; + char * file = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -1121,11 +1103,11 @@ Java_hdf_hdf5lib_H5_H5Pget_1external H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_external: size input array < 2"); if (name_size > 0) - if (NULL == (file = (char *) HDmalloc(sizeof(char) * (size_t)name_size))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_external: memory allocation failed"); + if (NULL == (file = (char *)HDmalloc(sizeof(char) * (size_t)name_size))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_external: memory allocation failed"); - if ((status = H5Pget_external((hid_t) plist, (unsigned)idx, (size_t)name_size, - file, (off_t *)&o, (hsize_t *)&s)) < 0) + if ((status = H5Pget_external((hid_t)plist, (unsigned)idx, (size_t)name_size, file, (off_t *)&o, + (hsize_t *)&s)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (NULL != size) { @@ -1140,7 +1122,8 @@ Java_hdf_hdf5lib_H5_H5Pget_1external if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, file))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_external: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, "H5Pget_external: out of memory - unable to construct string from UTF characters"); } ENVPTR->SetObjectArrayElement(ENVONLY, name, 0, (jobject)str); @@ -1162,8 +1145,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1external_1count - (JNIEnv *env, jclass clss, jlong plist) +Java_hdf_hdf5lib_H5_H5Pget_1external_1count(JNIEnv *env, jclass clss, jlong plist) { int retVal = -1; @@ -1182,12 +1164,11 @@ done: * Signature: (JJLjava/lang/String;Ljava/lang/String;J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1virtual - (JNIEnv *env, jclass clss, jlong dcpl_id, jlong vspace_id, - jstring src_file_name, jstring src_dset_name, jlong src_space_id) +Java_hdf_hdf5lib_H5_H5Pset_1virtual(JNIEnv *env, jclass clss, jlong dcpl_id, jlong vspace_id, + jstring src_file_name, jstring src_dset_name, jlong src_space_id) { - const char *fstr = NULL; - const char *dstr = NULL; + const char *fstr = NULL; + const char *dstr = NULL; herr_t retVal = FAIL; UNUSED(clss); @@ -1216,8 +1197,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1virtual_1count - (JNIEnv *env, jclass clss, jlong dcpl_id) +Java_hdf_hdf5lib_H5_H5Pget_1virtual_1count(JNIEnv *env, jclass clss, jlong dcpl_id) { size_t s = 0; @@ -1236,29 +1216,30 @@ done: * Signature: (JJ)Ljava/lang/String; */ JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1virtual_1dsetname - (JNIEnv *env, jclass clss, jlong dcpl_id, jlong index) +Java_hdf_hdf5lib_H5_H5Pget_1virtual_1dsetname(JNIEnv *env, jclass clss, jlong dcpl_id, jlong idx) { - ssize_t buf_size; - char *dname = NULL; - jstring str = NULL; + ssize_t buf_size; + char * dname = NULL; + jstring str = NULL; UNUSED(clss); /* get the length of the filename */ - if ((buf_size = H5Pget_virtual_dsetname((hid_t)dcpl_id, (size_t)index, NULL, 0)) < 0) + if ((buf_size = H5Pget_virtual_dsetname((hid_t)dcpl_id, (size_t)idx, NULL, 0)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (NULL == (dname = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_virtual_dsetname: memory allocation failed"); + if (NULL == (dname = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_virtual_dsetname: memory allocation failed"); - if (H5Pget_virtual_dsetname((hid_t)dcpl_id, (size_t)index, dname, (size_t)buf_size + 1) < 0) + if (H5Pget_virtual_dsetname((hid_t)dcpl_id, (size_t)idx, dname, (size_t)buf_size + 1) < 0) H5_LIBRARY_ERROR(ENVONLY); dname[buf_size] = '\0'; if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, dname))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_virtual_dsetname: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, + "H5Pget_virtual_dsetname: out of memory - unable to construct string from UTF characters"); } done: @@ -1274,29 +1255,30 @@ done: * Signature: (JJ)Ljava/lang/String; */ JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1virtual_1filename - (JNIEnv *env, jclass clss, jlong dcpl_id, jlong index) +Java_hdf_hdf5lib_H5_H5Pget_1virtual_1filename(JNIEnv *env, jclass clss, jlong dcpl_id, jlong idx) { - ssize_t buf_size; - char *fname = NULL; - jstring str = NULL; + ssize_t buf_size; + char * fname = NULL; + jstring str = NULL; UNUSED(clss); /* get the length of the filename */ - if ((buf_size = H5Pget_virtual_filename((hid_t)dcpl_id, (size_t)index, NULL, 0)) < 0) + if ((buf_size = H5Pget_virtual_filename((hid_t)dcpl_id, (size_t)idx, NULL, 0)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (NULL == (fname = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_virtual_filename: memory allocation failed"); + if (NULL == (fname = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_virtual_filename: memory allocation failed"); - if (H5Pget_virtual_filename((hid_t)dcpl_id, (size_t)index, fname, (size_t)buf_size + 1) < 0) + if (H5Pget_virtual_filename((hid_t)dcpl_id, (size_t)idx, fname, (size_t)buf_size + 1) < 0) H5_LIBRARY_ERROR(ENVONLY); fname[buf_size] = '\0'; if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, fname))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_virtual_filename: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, + "H5Pget_virtual_filename: out of memory - unable to construct string from UTF characters"); } done: @@ -1312,14 +1294,13 @@ done: * Signature: (JJ)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1virtual_1srcspace - (JNIEnv *env, jclass clss, jlong dcpl_id, jlong index) +Java_hdf_hdf5lib_H5_H5Pget_1virtual_1srcspace(JNIEnv *env, jclass clss, jlong dcpl_id, jlong idx) { hid_t space_id = H5I_INVALID_HID; UNUSED(clss); - if ((space_id = H5Pget_virtual_srcspace((hid_t)dcpl_id, (size_t)index)) < 0) + if ((space_id = H5Pget_virtual_srcspace((hid_t)dcpl_id, (size_t)idx)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -1332,14 +1313,13 @@ done: * Signature: (JJ)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1virtual_1vspace - (JNIEnv *env, jclass clss, jlong dcpl_id, jlong index) +Java_hdf_hdf5lib_H5_H5Pget_1virtual_1vspace(JNIEnv *env, jclass clss, jlong dcpl_id, jlong idx) { hid_t space_id = H5I_INVALID_HID; UNUSED(clss); - if ((space_id = H5Pget_virtual_vspace((hid_t)dcpl_id, (size_t)index)) < 0) + if ((space_id = H5Pget_virtual_vspace((hid_t)dcpl_id, (size_t)idx)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -1352,11 +1332,10 @@ done: * Signature: (JLjava/lang/String;)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1virtual_1prefix - (JNIEnv *env, jclass clss, jlong dapl_id, jstring prefix) +Java_hdf_hdf5lib_H5_H5Pset_1virtual_1prefix(JNIEnv *env, jclass clss, jlong dapl_id, jstring prefix) { const char *virtPrefix = NULL; - herr_t retVal = FAIL; + herr_t retVal = FAIL; UNUSED(clss); @@ -1379,28 +1358,28 @@ done: * Signature: (J)Ljava/lang/String; */ JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1virtual_1prefix - (JNIEnv *env, jclass clss, jlong dapl_id) +Java_hdf_hdf5lib_H5_H5Pget_1virtual_1prefix(JNIEnv *env, jclass clss, jlong dapl_id) { - ssize_t prefix_size = -1; - char *pre = NULL; - jstring str = NULL; + ssize_t prefix_size = -1; + char * pre = NULL; + jstring str = NULL; UNUSED(clss); if ((prefix_size = H5Pget_virtual_prefix((hid_t)dapl_id, (char *)NULL, 0)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (NULL == (pre = (char *) HDmalloc(sizeof(char) * (size_t) prefix_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_virtual_prefix: memory allocation failed"); + if (NULL == (pre = (char *)HDmalloc(sizeof(char) * (size_t)prefix_size + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_virtual_prefix: memory allocation failed"); - if (H5Pget_virtual_prefix((hid_t)dapl_id, (char *)pre, (size_t) prefix_size + 1) < 0) + if (H5Pget_virtual_prefix((hid_t)dapl_id, (char *)pre, (size_t)prefix_size + 1) < 0) H5_LIBRARY_ERROR(ENVONLY); pre[prefix_size] = '\0'; if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, pre))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_virtual_prefix: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, "H5Pget_virtual_prefix: out of memory - unable to construct string from UTF characters"); } done: diff --git a/java/src/jni/h5pDCPLImp.h b/java/src/jni/h5pDCPLImp.h index 6e5c225..46d1cc3 100644 --- a/java/src/jni/h5pDCPLImp.h +++ b/java/src/jni/h5pDCPLImp.h @@ -1,18 +1,17 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#ifndef _Included_hdf_hdf5lib_H5_H5PDCPL -#define _Included_hdf_hdf5lib_H5_H5PDCPL +#ifndef Included_hdf_hdf5lib_H5_H5PDCPL +#define Included_hdf_hdf5lib_H5_H5PDCPL #include <jni.h> @@ -25,372 +24,300 @@ extern "C" { * Method: H5Pset_layout * Signature: (JI)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1layout -(JNIEnv *, jclass, jlong, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1layout(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_layout * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1layout -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1layout(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_chunk * Signature: (JI[B)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1chunk -(JNIEnv *, jclass, jlong, jint, jbyteArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1chunk(JNIEnv *, jclass, jlong, jint, jbyteArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_chunk * Signature: (JI[J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1chunk -(JNIEnv *, jclass, jlong, jint, jlongArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1chunk(JNIEnv *, jclass, jlong, jint, jlongArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_chunk_opts * Signature: (JI)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1chunk_1opts -(JNIEnv *, jclass, jlong, jint); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1chunk_1opts(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_chunk_opts * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1chunk_1opts -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1chunk_1opts(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_dset_no_attrs_hint * Signature: (JZ)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1dset_1no_1attrs_1hint - (JNIEnv *, jclass, jlong, jboolean); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1dset_1no_1attrs_1hint(JNIEnv *, jclass, jlong, jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_dset_no_attrs_hint * Signature: (J)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1dset_1no_1attrs_1hint - (JNIEnv *, jclass, jlong); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Pget_1dset_1no_1attrs_1hint(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_deflate * Signature: (JI)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1deflate -(JNIEnv *, jclass, jlong, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1deflate(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_fill_value * Signature: (JJ[B)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fill_1value -(JNIEnv *, jclass, jlong, jlong, jbyteArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1fill_1value(JNIEnv *, jclass, jlong, jlong, jbyteArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_fill_value * Signature: (JJ[B)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1fill_1value -(JNIEnv *, jclass, jlong, jlong, jbyteArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1fill_1value(JNIEnv *, jclass, jlong, jlong, jbyteArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pfill_value_defined * Signature: (J[I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pfill_1value_1defined -(JNIEnv *, jclass, jlong, jintArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pfill_1value_1defined(JNIEnv *, jclass, jlong, jintArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_fill_time * Signature: (JI)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fill_1time -(JNIEnv *, jclass, jlong, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1fill_1time(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_fill_time * Signature: (J[I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1fill_1time -(JNIEnv *, jclass, jlong, jintArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1fill_1time(JNIEnv *, jclass, jlong, jintArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_alloc_time * Signature: (JI)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1alloc_1time -(JNIEnv *, jclass, jlong, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1alloc_1time(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_alloc_time * Signature: (J[I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1alloc_1time -(JNIEnv *, jclass, jlong, jintArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1alloc_1time(JNIEnv *, jclass, jlong, jintArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_filter * Signature: (JIIJ[I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1filter -(JNIEnv *, jclass, jlong, jint, jint, jlong, jintArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1filter(JNIEnv *, jclass, jlong, jint, jint, jlong, + jintArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pall_filters_avail * Signature: (J)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Pall_1filters_1avail -(JNIEnv *, jclass, jlong); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Pall_1filters_1avail(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_nfilters * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1nfilters -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1nfilters(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_filter * Signature: (JI[I[J[IJ[Ljava/lang/String;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1filter -(JNIEnv *, jclass, jlong, jint, jintArray, jlongArray, jintArray, jlong, jobjectArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1filter(JNIEnv *, jclass, jlong, jint, jintArray, + jlongArray, jintArray, jlong, jobjectArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_filter2 * Signature: (JI[I[J[IJ[Ljava/lang/String;[I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1filter2 -(JNIEnv *, jclass, jlong, jint, jintArray, jlongArray, jintArray, jlong, jobjectArray, jintArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1filter2(JNIEnv *, jclass, jlong, jint, jintArray, + jlongArray, jintArray, jlong, jobjectArray, + jintArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_filter_by_id * Signature: (JI[I[J[IJ[Ljava/lang/String;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id -(JNIEnv *, jclass, jlong, jint, jintArray, jlongArray, jintArray, jlong, jobjectArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id(JNIEnv *, jclass, jlong, jint, jintArray, + jlongArray, jintArray, jlong, jobjectArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_filter_by_id2 * Signature: (JI[I[J[IJ[Ljava/lang/String;[I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2 -(JNIEnv *, jclass, jlong, jint, jintArray, jlongArray, jintArray, jlong, jobjectArray, jintArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1filter_1by_1id2(JNIEnv *, jclass, jlong, jint, jintArray, + jlongArray, jintArray, jlong, jobjectArray, + jintArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pmodify_filter * Signature: (JIIJ[I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pmodify_1filter -(JNIEnv *, jclass, jlong, jint, jint, jlong, jintArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pmodify_1filter(JNIEnv *, jclass, jlong, jint, jint, jlong, + jintArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Premove_filter * Signature: (JI)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5P1remove_1filter -(JNIEnv *, jclass, jlong, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5P1remove_1filter(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_fletcher32 * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fletcher32 -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1fletcher32(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_nbit * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1nbit -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1nbit(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_scaleoffset * Signature: (JII)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1scaleoffset -(JNIEnv *, jclass, jlong, jint, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1scaleoffset(JNIEnv *, jclass, jlong, jint, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_shuffle * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1shuffle -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1shuffle(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_szip * Signature: (JII)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1szip -(JNIEnv *, jclass, jlong, jint, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1szip(JNIEnv *, jclass, jlong, jint, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_external * Signature: (JLjava/lang/String;JJ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1external -(JNIEnv *, jclass, jlong, jstring, jlong, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1external(JNIEnv *, jclass, jlong, jstring, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_external * Signature: (JIJ[Ljava/lang/String;[J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1external -(JNIEnv *, jclass, jlong, jint, jlong, jobjectArray, jlongArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1external(JNIEnv *, jclass, jlong, jint, jlong, + jobjectArray, jlongArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_external_count * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1external_1count -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1external_1count(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_virtual * Signature: (JJLjava/lang/String;Ljava/lang/String;J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1virtual -(JNIEnv *, jclass, jlong, jlong, jstring, jstring, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1virtual(JNIEnv *, jclass, jlong, jlong, jstring, jstring, + jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_virtual_count * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1virtual_1count -(JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Pget_1virtual_1count(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_virtual_dsetname * Signature: (JJ)Ljava/lang/String; */ -JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1virtual_1dsetname -(JNIEnv *, jclass, jlong, jlong); +JNIEXPORT jstring JNICALL Java_hdf_hdf5lib_H5_H5Pget_1virtual_1dsetname(JNIEnv *, jclass, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_virtual_filename * Signature: (JJ)Ljava/lang/String; */ -JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1virtual_1filename -(JNIEnv *, jclass, jlong, jlong); +JNIEXPORT jstring JNICALL Java_hdf_hdf5lib_H5_H5Pget_1virtual_1filename(JNIEnv *, jclass, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_virtual_srcspace * Signature: (JJ)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1virtual_1srcspace -(JNIEnv *, jclass, jlong, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Pget_1virtual_1srcspace(JNIEnv *, jclass, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_virtual_vspace * Signature: (JJ)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1virtual_1vspace -(JNIEnv *, jclass, jlong, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Pget_1virtual_1vspace(JNIEnv *, jclass, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_virtual_prefix * Signature: (JLjava/lang/String;)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1virtual_1prefix -(JNIEnv *, jclass, jlong, jstring); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1virtual_1prefix(JNIEnv *, jclass, jlong, jstring); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_virtual_prefix * Signature: (J)Ljava/lang/String; */ -JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1virtual_1prefix -(JNIEnv *, jclass, jlong); +JNIEXPORT jstring JNICALL Java_hdf_hdf5lib_H5_H5Pget_1virtual_1prefix(JNIEnv *, jclass, jlong); #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5PDCPL */ +#endif /* Included_hdf_hdf5lib_H5_H5PDCPL */ diff --git a/java/src/jni/h5pDXPLImp.c b/java/src/jni/h5pDXPLImp.c index 323fa8c..c555d53 100644 --- a/java/src/jni/h5pDXPLImp.c +++ b/java/src/jni/h5pDXPLImp.c @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -37,15 +36,15 @@ extern "C" { * Signature: (JJ[B[B)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1buffer - (JNIEnv *env, jclass clss, jlong plist, jlong size, jbyteArray tconv, jbyteArray bkg) +Java_hdf_hdf5lib_H5_H5Pset_1buffer(JNIEnv *env, jclass clss, jlong plist, jlong size, jbyteArray tconv, + jbyteArray bkg) { #ifdef notdef - jboolean isCopy; - jbyte *tconvP = NULL; - jbyte *bkgP = NULL; + jboolean isCopy; + jbyte * tconvP = NULL; + jbyte * bkgP = NULL; #endif - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); #ifndef notdef @@ -85,15 +84,14 @@ done: * Signature: (J[B[B)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1buffer - (JNIEnv *env, jclass clss, jlong plist, jbyteArray tconv, jbyteArray bkg) +Java_hdf_hdf5lib_H5_H5Pget_1buffer(JNIEnv *env, jclass clss, jlong plist, jbyteArray tconv, jbyteArray bkg) { #ifdef notdef - jboolean isCopy; - jbyte *tconvP = NULL; - jbyte *bkgP = NULL; + jboolean isCopy; + jbyte * tconvP = NULL; + jbyte * bkgP = NULL; #endif - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); #ifndef notdef @@ -135,8 +133,7 @@ done: * Signature: (JJ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1buffer_1size - (JNIEnv *env, jclass clss, jlong plist, jlong size) +Java_hdf_hdf5lib_H5_H5Pset_1buffer_1size(JNIEnv *env, jclass clss, jlong plist, jlong size) { UNUSED(clss); @@ -153,8 +150,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1buffer_1size - (JNIEnv *env, jclass clss, jlong plist) +Java_hdf_hdf5lib_H5_H5Pget_1buffer_1size(JNIEnv *env, jclass clss, jlong plist) { size_t size = 0; @@ -173,10 +169,9 @@ done: * Signature: (JZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1preserve - (JNIEnv *env, jclass clss, jlong plist, jboolean status) +Java_hdf_hdf5lib_H5_H5Pset_1preserve(JNIEnv *env, jclass clss, jlong plist, jboolean status) { - hbool_t st = JNI_FALSE; + hbool_t st = JNI_FALSE; herr_t retVal = FAIL; UNUSED(clss); @@ -201,8 +196,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1preserve - (JNIEnv *env, jclass clss, jlong plist) +Java_hdf_hdf5lib_H5_H5Pget_1preserve(JNIEnv *env, jclass clss, jlong plist) { herr_t retVal = FAIL; @@ -221,8 +215,7 @@ done: * Signature: (JI)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1edc_1check - (JNIEnv *env, jclass clss, jlong plist, jint check) +Java_hdf_hdf5lib_H5_H5Pset_1edc_1check(JNIEnv *env, jclass clss, jlong plist, jint check) { herr_t retVal = FAIL; @@ -241,8 +234,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1edc_1check - (JNIEnv *env, jclass clss, jlong plist) +Java_hdf_hdf5lib_H5_H5Pget_1edc_1check(JNIEnv *env, jclass clss, jlong plist) { H5Z_EDC_t retVal = -1; @@ -265,18 +257,18 @@ done: * Signature: (JLjava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1data_1transform - (JNIEnv *env, jclass clss, jlong plist_id, jstring expression) +Java_hdf_hdf5lib_H5_H5Pset_1data_1transform(JNIEnv *env, jclass clss, jlong plist_id, jstring expression) { const char *express = NULL; - herr_t retVal = FAIL; + herr_t retVal = FAIL; UNUSED(clss); if (NULL == expression) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pset_data_transform: data transform expression is NULL"); - PIN_JAVA_STRING(ENVONLY, expression, express, NULL, "H5Pset_data_transform: data transform expression not pinned"); + PIN_JAVA_STRING(ENVONLY, expression, express, NULL, + "H5Pset_data_transform: data transform expression not pinned"); if ((retVal = H5Pset_data_transform((hid_t)plist_id, express)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -294,12 +286,12 @@ done: * Signature: (J[Ljava/lang/String;J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1data_1transform - (JNIEnv *env, jclass clss, jlong plist_id, jobjectArray expression, jlong size) +Java_hdf_hdf5lib_H5_H5Pget_1data_1transform(JNIEnv *env, jclass clss, jlong plist_id, jobjectArray expression, + jlong size) { - jstring str = NULL; - char *express = NULL; - ssize_t express_size = -1; + jstring str = NULL; + char * express = NULL; + ssize_t express_size = -1; UNUSED(clss); @@ -309,8 +301,8 @@ Java_hdf_hdf5lib_H5_H5Pget_1data_1transform if ((express_size = H5Pget_data_transform((hid_t)plist_id, (char *)NULL, (size_t)size)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (NULL == (express = (char *) HDmalloc(sizeof(char) * (size_t)express_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_data_transform: memory allocation failed"); + if (NULL == (express = (char *)HDmalloc(sizeof(char) * (size_t)express_size + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_data_transform: memory allocation failed"); if (H5Pget_data_transform((hid_t)plist_id, express, (size_t)express_size + 1) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -318,7 +310,8 @@ Java_hdf_hdf5lib_H5_H5Pget_1data_1transform if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, express))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_data_transform: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, "H5Pget_data_transform: out of memory - unable to construct string from UTF characters"); } ENVPTR->SetObjectArrayElement(ENVONLY, expression, 0, str); @@ -345,8 +338,7 @@ done: * Signature: (JJ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1hyper_1vector_1size - (JNIEnv *env, jclass clss, jlong plist, jlong vector_size) +Java_hdf_hdf5lib_H5_H5Pset_1hyper_1vector_1size(JNIEnv *env, jclass clss, jlong plist, jlong vector_size) { herr_t retVal = FAIL; @@ -365,22 +357,22 @@ done: * Signature: (J[J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1hyper_1vector_1size - (JNIEnv *env, jclass clss, jlong plist, jlongArray vector_size) +Java_hdf_hdf5lib_H5_H5Pget_1hyper_1vector_1size(JNIEnv *env, jclass clss, jlong plist, jlongArray vector_size) { - jboolean isCopy; - size_t size; - jlong *theArray = NULL; - herr_t retVal = FAIL; + jboolean isCopy; + size_t size; + jlong * theArray = NULL; + herr_t retVal = FAIL; UNUSED(clss); if (NULL == vector_size) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pget_hyper_vector_size: vector_size is NULL"); - PIN_LONG_ARRAY(ENVONLY, vector_size, theArray, &isCopy, "H5Pget_hyper_vector_size: vector_size not pinned"); + PIN_LONG_ARRAY(ENVONLY, vector_size, theArray, &isCopy, + "H5Pget_hyper_vector_size: vector_size not pinned"); - if ((retVal = H5Pget_hyper_vector_size((hid_t)plist, &size)) < 0) + if ((retVal = H5Pget_hyper_vector_size((hid_t)plist, &size)) < 0) H5_LIBRARY_ERROR(ENVONLY); theArray[0] = (jlong)size; @@ -398,14 +390,14 @@ done: * Signature: (JDDD)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1btree_1ratios - (JNIEnv *env, jclass clss, jlong plist_id, jdouble left, jdouble middle, jdouble right) +Java_hdf_hdf5lib_H5_H5Pset_1btree_1ratios(JNIEnv *env, jclass clss, jlong plist_id, jdouble left, + jdouble middle, jdouble right) { herr_t status = FAIL; UNUSED(clss); - if ((status = H5Pset_btree_ratios((hid_t)plist_id, (double)left,(double)middle, (double)right)) < 0) + if ((status = H5Pset_btree_ratios((hid_t)plist_id, (double)left, (double)middle, (double)right)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -418,15 +410,14 @@ done: * Signature: (J[D[D[D)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1btree_1ratios - (JNIEnv *env, jclass clss, jlong plist_id, jdoubleArray left, - jdoubleArray middle, jdoubleArray right) +Java_hdf_hdf5lib_H5_H5Pget_1btree_1ratios(JNIEnv *env, jclass clss, jlong plist_id, jdoubleArray left, + jdoubleArray middle, jdoubleArray right) { - jboolean isCopy; - jdouble *leftP = NULL; - jdouble *middleP = NULL; - jdouble *rightP = NULL; - herr_t status = FAIL; + jboolean isCopy; + jdouble *leftP = NULL; + jdouble *middleP = NULL; + jdouble *rightP = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -441,8 +432,8 @@ Java_hdf_hdf5lib_H5_H5Pget_1btree_1ratios PIN_DOUBLE_ARRAY(ENVONLY, middle, middleP, &isCopy, "H5Pget_btree_ratios: middle array not pinned"); PIN_DOUBLE_ARRAY(ENVONLY, right, rightP, &isCopy, "H5Pget_btree_ratios: right array not pinned"); - if ((status = H5Pget_btree_ratios((hid_t)plist_id, (double *)leftP, - (double *)middleP, (double *)rightP)) < 0) + if ((status = + H5Pget_btree_ratios((hid_t)plist_id, (double *)leftP, (double *)middleP, (double *)rightP)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: diff --git a/java/src/jni/h5pDXPLImp.h b/java/src/jni/h5pDXPLImp.h index d62f9c5..21c40c4 100644 --- a/java/src/jni/h5pDXPLImp.h +++ b/java/src/jni/h5pDXPLImp.h @@ -1,18 +1,17 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#ifndef _Included_hdf_hdf5lib_H5_H5PDXPL -#define _Included_hdf_hdf5lib_H5_H5PDXPL +#ifndef Included_hdf_hdf5lib_H5_H5PDXPL +#define Included_hdf_hdf5lib_H5_H5PDXPL #include <jni.h> @@ -25,72 +24,57 @@ extern "C" { * Method: H5Pset_buffer * Signature: (JJ[B[B)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1buffer -(JNIEnv *, jclass, jlong, jlong, jbyteArray, jbyteArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1buffer(JNIEnv *, jclass, jlong, jlong, jbyteArray, + jbyteArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_buffer * Signature: (J[B[B)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1buffer -(JNIEnv *, jclass, jlong, jbyteArray, jbyteArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1buffer(JNIEnv *, jclass, jlong, jbyteArray, jbyteArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_buffer_size * Signature: (JJ)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1buffer_1size -(JNIEnv *, jclass, jlong, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1buffer_1size(JNIEnv *, jclass, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_buffer_size * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1buffer_1size -(JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Pget_1buffer_1size(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_preserve * Signature: (JZ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1preserve -(JNIEnv *, jclass, jlong, jboolean); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1preserve(JNIEnv *, jclass, jlong, jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_preserve * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1preserve -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1preserve(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_edc_check * Signature: (JI)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1edc_1check -(JNIEnv *, jclass, jlong, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1edc_1check(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_edc_check * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1edc_1check -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1edc_1check(JNIEnv *, jclass, jlong); /* * TODO: H5Pset_filter_callback @@ -101,18 +85,15 @@ Java_hdf_hdf5lib_H5_H5Pget_1edc_1check * Method: H5Pset_data_transform * Signature: (JLjava/lang/String;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1data_1transform -(JNIEnv *, jclass, jlong, jstring); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1data_1transform(JNIEnv *, jclass, jlong, jstring); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_data_transform * Signature: (J[Ljava/lang/String;J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1data_1transform -(JNIEnv *, jclass, jlong, jobjectArray, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Pget_1data_1transform(JNIEnv *, jclass, jlong, jobjectArray, + jlong); /* * TODO: H5Pset_type_conv_cb @@ -127,36 +108,30 @@ Java_hdf_hdf5lib_H5_H5Pget_1data_1transform * Method: H5Pset_hyper_vector_size * Signature: (JJ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1hyper_1vector_1size -(JNIEnv *, jclass, jlong, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1hyper_1vector_1size(JNIEnv *, jclass, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_hyper_vector_size * Signature: (J[J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1hyper_1vector_1size -(JNIEnv *, jclass, jlong, jlongArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1hyper_1vector_1size(JNIEnv *, jclass, jlong, jlongArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_btree_ratios * Signature: (JDDD)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1btree_1ratios -(JNIEnv *, jclass, jlong, jdouble, jdouble, jdouble); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1btree_1ratios(JNIEnv *, jclass, jlong, jdouble, jdouble, + jdouble); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_btree_ratios * Signature: (J[D[D[D)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1btree_1ratios -(JNIEnv *, jclass, jlong, jdoubleArray, jdoubleArray, jdoubleArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1btree_1ratios(JNIEnv *, jclass, jlong, jdoubleArray, + jdoubleArray, jdoubleArray); /* * TODO: H5Pset_vlen_mem_manager @@ -206,4 +181,4 @@ Java_hdf_hdf5lib_H5_H5Pget_1btree_1ratios } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5PDXPL */ +#endif /* Included_hdf_hdf5lib_H5_H5PDXPL */ diff --git a/java/src/jni/h5pFAPLImp.c b/java/src/jni/h5pFAPLImp.c index 006707a..ad85aae 100644 --- a/java/src/jni/h5pFAPLImp.c +++ b/java/src/jni/h5pFAPLImp.c @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -42,14 +41,13 @@ extern "C" { * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1driver - (JNIEnv *env, jclass clss, jlong plist) +Java_hdf_hdf5lib_H5_H5Pget_1driver(JNIEnv *env, jclass clss, jlong plist) { hid_t retVal = H5I_INVALID_HID; UNUSED(clss); - if ((retVal = H5Pget_driver((hid_t) plist)) < 0) + if ((retVal = H5Pget_driver((hid_t)plist)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -66,8 +64,7 @@ done: * Signature: (JI)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fclose_1degree - (JNIEnv *env, jclass clss, jlong plist, jint fc_degree) +Java_hdf_hdf5lib_H5_H5Pset_1fclose_1degree(JNIEnv *env, jclass clss, jlong plist, jint fc_degree) { herr_t retVal = FAIL; @@ -86,8 +83,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1fclose_1degree - (JNIEnv *env, jclass clss, jlong plist) +Java_hdf_hdf5lib_H5_H5Pget_1fclose_1degree(JNIEnv *env, jclass clss, jlong plist) { H5F_close_degree_t degree = H5F_CLOSE_DEFAULT; @@ -106,8 +102,8 @@ done: * Signature: (JJZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fapl_1core - (JNIEnv *env, jclass clss, jlong fapl_id, jlong increment, jboolean backing_store) +Java_hdf_hdf5lib_H5_H5Pset_1fapl_1core(JNIEnv *env, jclass clss, jlong fapl_id, jlong increment, + jboolean backing_store) { herr_t retVal = FAIL; @@ -126,13 +122,13 @@ done: * Signature: (J[J[Z)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1fapl_1core - (JNIEnv *env, jclass clss, jlong fapl_id, jlongArray increment, jbooleanArray backing_store) +Java_hdf_hdf5lib_H5_H5Pget_1fapl_1core(JNIEnv *env, jclass clss, jlong fapl_id, jlongArray increment, + jbooleanArray backing_store) { jboolean isCopy; jboolean *backArray = NULL; - jlong *incArray = NULL; - herr_t status = FAIL; + jlong * incArray = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -147,7 +143,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1fapl_1core { /* Direct cast (size_t *)variable fails on 32-bit environment */ long long inc_temp = *incArray; - size_t inc_t = (size_t) inc_temp; + size_t inc_t = (size_t)inc_temp; if ((status = H5Pget_fapl_core((hid_t)fapl_id, &inc_t, (hbool_t *)backArray)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -178,16 +174,16 @@ done: * Signature: (JJJJ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fapl_1direct - (JNIEnv *env, jclass clss, jlong fapl_id, jlong alignment, - jlong block_size, jlong cbuf_size) +Java_hdf_hdf5lib_H5_H5Pset_1fapl_1direct(JNIEnv *env, jclass clss, jlong fapl_id, jlong alignment, + jlong block_size, jlong cbuf_size) { herr_t retVal = FAIL; UNUSED(clss); #ifdef H5_HAVE_DIRECT - if ((retVal = H5Pset_fapl_direct((hid_t)fapl_id, (size_t)alignment, (size_t)block_size, (size_t)cbuf_size)) < 0) + if ((retVal = H5Pset_fapl_direct((hid_t)fapl_id, (size_t)alignment, (size_t)block_size, + (size_t)cbuf_size)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -208,18 +204,17 @@ done: * Signature: (J[J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1fapl_1direct - (JNIEnv *env, jclass clss, jlong fapl_id, jlongArray info) +Java_hdf_hdf5lib_H5_H5Pget_1fapl_1direct(JNIEnv *env, jclass clss, jlong fapl_id, jlongArray info) { #ifdef H5_HAVE_DIRECT - jboolean isCopy; - jlong *theArray = NULL; - size_t alignment = 0; - size_t block_size = 0; - size_t cbuf_size = 0; - jsize arrLen; + jboolean isCopy; + jlong * theArray = NULL; + size_t alignment = 0; + size_t block_size = 0; + size_t cbuf_size = 0; + jsize arrLen; #endif - herr_t retVal = FAIL; + herr_t retVal = FAIL; UNUSED(clss); @@ -261,10 +256,10 @@ done: * Signature: (JJJ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fapl_1family - (JNIEnv *env, jclass clss, jlong plist, jlong memb_size, jlong memb_plist) +Java_hdf_hdf5lib_H5_H5Pset_1fapl_1family(JNIEnv *env, jclass clss, jlong plist, jlong memb_size, + jlong memb_plist) { - long ms = (long)memb_size; + long ms = (long)memb_size; herr_t retVal = FAIL; UNUSED(clss); @@ -282,16 +277,16 @@ done: * Signature: (J[J[J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1fapl_1family - (JNIEnv *env, jclass clss, jlong tid, jlongArray memb_size, jlongArray memb_plist) +Java_hdf_hdf5lib_H5_H5Pget_1fapl_1family(JNIEnv *env, jclass clss, jlong tid, jlongArray memb_size, + jlongArray memb_plist) { - jboolean isCopy; - hsize_t *sa = NULL; - size_t i; - jlong *sizeArray = NULL; - jlong *plistArray = NULL; - jsize rank; - herr_t status = FAIL; + jboolean isCopy; + hsize_t *sa = NULL; + size_t i; + jlong * sizeArray = NULL; + jlong * plistArray = NULL; + jsize rank; + herr_t status = FAIL; UNUSED(clss); @@ -307,15 +302,15 @@ Java_hdf_hdf5lib_H5_H5Pget_1fapl_1family H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_family: memb_size array length < 0"); } - if (NULL == (sa = (hsize_t *) HDmalloc((size_t) rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_family: memory allocation failed"); + if (NULL == (sa = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_family: memory allocation failed"); PIN_LONG_ARRAY(ENVONLY, memb_plist, plistArray, &isCopy, "H5Pget_family: plistArray not pinned"); if ((status = H5Pget_fapl_family((hid_t)tid, sa, (hid_t *)plistArray)) < 0) H5_LIBRARY_ERROR(ENVONLY); - for (i = 0; i < (size_t) rank; i++) + for (i = 0; i < (size_t)rank; i++) sizeArray[i] = (jlong)sa[i]; done: @@ -335,8 +330,7 @@ done: * Signature: (JJ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1family_1offset - (JNIEnv *env, jclass clss, jlong fapl_id, jlong offset) +Java_hdf_hdf5lib_H5_H5Pset_1family_1offset(JNIEnv *env, jclass clss, jlong fapl_id, jlong offset) { herr_t retVal = FAIL; @@ -355,8 +349,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1family_1offset - (JNIEnv *env, jclass clss, jlong fapl_id) +Java_hdf_hdf5lib_H5_H5Pget_1family_1offset(JNIEnv *env, jclass clss, jlong fapl_id) { hsize_t offset = 0; herr_t retVal = FAIL; @@ -375,8 +368,7 @@ done: * Signature: (J)Lhdf/hdf5lib/structs/H5FD_hdfs_fapl_t; */ JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1fapl_1hdfs - (JNIEnv *env, jclass clss, jlong fapl_id) +Java_hdf_hdf5lib_H5_H5Pget_1fapl_1hdfs(JNIEnv *env, jclass clss, jlong fapl_id) { #ifdef H5_HAVE_LIBHDFS H5FD_hdfs_fapl_t fa; @@ -387,7 +379,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1fapl_1hdfs jstring j_kerb_cache_path = NULL; jint j_stream_buffer_size = 0; #endif /* H5_HAVE_LIBHDFS */ - jobject ret_obj = NULL; + jobject ret_obj = NULL; UNUSED(clss); @@ -395,36 +387,35 @@ Java_hdf_hdf5lib_H5_H5Pget_1fapl_1hdfs if (H5Pget_fapl_hdfs((hid_t)fapl_id, &fa) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (NULL != fa.namenode_name) { - if (NULL == (j_namenode_name = ENVPTR->NewStringUTF(ENVONLY, fa.namenode_name))) { - CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_fapl_hdfs: out of memory - can't create namenode_name string"); - } + if (NULL == (j_namenode_name = ENVPTR->NewStringUTF(ENVONLY, fa.namenode_name))) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "H5Pget_fapl_hdfs: out of memory - can't create namenode_name string"); } args[0].l = j_namenode_name; args[1].i = (jint)fa.namenode_port; - if (NULL != fa.user_name) { - if (NULL == (j_user_name = ENVPTR->NewStringUTF(ENVONLY, fa.user_name))) { - CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_fapl_hdfs: out of memory - can't create user_name string"); - } + if (NULL == (j_user_name = ENVPTR->NewStringUTF(ENVONLY, fa.user_name))) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_fapl_hdfs: out of memory - can't create user_name string"); } args[2].l = j_user_name; - if (NULL != fa.kerberos_ticket_cache) { - if (NULL == (j_kerb_cache_path = ENVPTR->NewStringUTF(ENVONLY, fa.kerberos_ticket_cache))) { - CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_fapl_hdfs: out of memory - can't create kerberos_ticket_cache string"); - } + if (NULL == (j_kerb_cache_path = ENVPTR->NewStringUTF(ENVONLY, fa.kerberos_ticket_cache))) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "H5Pget_fapl_hdfs: out of memory - can't create kerberos_ticket_cache string"); } args[3].l = j_kerb_cache_path; args[4].i = (jint)fa.stream_buffer_size; - CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5FD_hdfs_fapl_t", "(Ljava/lang/String;ILjava/lang/String;Ljava/lang/String;I)V", args, ret_obj); + CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5FD_hdfs_fapl_t", + "(Ljava/lang/String;ILjava/lang/String;Ljava/lang/String;I)V", args, ret_obj); #else + UNUSED(fapl_id); + H5_UNIMPLEMENTED(ENVONLY, "H5Pget_fapl_hdfs: not implemented"); #endif /* H5_HAVE_LIBHDFS */ @@ -438,15 +429,14 @@ done: * Signature: (JLhdf/hdf5lib/structs/H5FD_hdfs_fapl_t;)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fapl_1hdfs - (JNIEnv *env, jclass clss, jlong fapl_id, jobject fapl_config) +Java_hdf_hdf5lib_H5_H5Pset_1fapl_1hdfs(JNIEnv *env, jclass clss, jlong fapl_id, jobject fapl_config) { #ifdef H5_HAVE_LIBHDFS - H5FD_hdfs_fapl_t instance; - const char *str = NULL; - jfieldID fid; - jstring j_str; - jclass cls; + H5FD_hdfs_fapl_t instance; + const char * str = NULL; + jfieldID fid; + jstring j_str; + jclass cls; #endif /* H5_HAVE_LIBHDFS */ UNUSED(clss); @@ -512,7 +502,8 @@ Java_hdf_hdf5lib_H5_H5Pset_1fapl_1hdfs CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (j_str) { - PIN_JAVA_STRING(ENVONLY, j_str, str, NULL, "H5FDset_fapl_hdfs: fapl_config kerberos_ticket_cache not pinned"); + PIN_JAVA_STRING(ENVONLY, j_str, str, NULL, + "H5FDset_fapl_hdfs: fapl_config kerberos_ticket_cache not pinned"); HDstrncpy(instance.kerberos_ticket_cache, str, H5FD__HDFS_KERB_CACHE_PATH_SPACE + 1); instance.kerberos_ticket_cache[H5FD__HDFS_KERB_CACHE_PATH_SPACE] = '\0'; @@ -530,8 +521,11 @@ Java_hdf_hdf5lib_H5_H5Pset_1fapl_1hdfs CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (H5Pset_fapl_hdfs((hid_t)fapl_id, &instance) < 0) - H5_LIBRARY_ERROR(ENVONLY); + H5_LIBRARY_ERROR(ENVONLY); #else + UNUSED(fapl_id); + UNUSED(fapl_config); + H5_UNIMPLEMENTED(ENVONLY, "H5Pset_fapl_hdfs: not implemented"); #endif /* H5_HAVE_LIBHDFS */ @@ -549,11 +543,11 @@ done: * Signature: (JLjava/lang/String;JJ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fapl_1log - (JNIEnv *env, jclass clss, jlong fapl_id, jstring logfile, jlong flags, jlong buf_size) +Java_hdf_hdf5lib_H5_H5Pset_1fapl_1log(JNIEnv *env, jclass clss, jlong fapl_id, jstring logfile, jlong flags, + jlong buf_size) { const char *pLogfile = NULL; - herr_t retVal = FAIL; + herr_t retVal = FAIL; UNUSED(clss); @@ -592,24 +586,24 @@ done: * Signature: (J[I[J[Ljava/lang/String;[JZ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi - (JNIEnv *env, jclass clss, jlong tid, jintArray memb_map, - jlongArray memb_fapl, jobjectArray memb_name, jlongArray memb_addr, jboolean relax) +Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi(JNIEnv *env, jclass clss, jlong tid, jintArray memb_map, + jlongArray memb_fapl, jobjectArray memb_name, jlongArray memb_addr, + jboolean relax) { - const char * const *mName = NULL; - const char *utf8 = NULL; - jboolean isCopy; - jboolean bb; - jobject o; - jstring rstring; - jstring obj; - jclass Sjc; - size_t i; - jlong *thefaplArray = NULL; - jlong *theaddrArray = NULL; - jint *themapArray = NULL; - char *member_name[H5FD_MEM_NTYPES]; - herr_t status = FAIL; + const char *const *mName = NULL; + const char * utf8 = NULL; + jboolean isCopy; + jboolean bb; + jobject o; + jstring rstring; + jstring obj; + jclass Sjc; + size_t i; + jlong * thefaplArray = NULL; + jlong * theaddrArray = NULL; + jint * themapArray = NULL; + char * member_name[H5FD_MEM_NTYPES]; + herr_t status = FAIL; UNUSED(clss); @@ -626,7 +620,8 @@ Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi for (i = 0; i < H5FD_MEM_NTYPES; i++) { size_t str_len; - if (NULL == (obj = (jstring) ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray) memb_name, (jsize) i))) { + if (NULL == + (obj = (jstring)ENVPTR->GetObjectArrayElement(ENVONLY, (jobjectArray)memb_name, (jsize)i))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); /* @@ -645,8 +640,8 @@ Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi str_len = HDstrlen(utf8); - if (NULL == (member_name[i] = (char *) HDmalloc(str_len + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pset_fapl_multi: memory allocation failed"); + if (NULL == (member_name[i] = (char *)HDmalloc(str_len + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pset_fapl_multi: memory allocation failed"); HDstrncpy(member_name[i], utf8, str_len + 1); (member_name[i])[str_len] = '\0'; @@ -657,11 +652,11 @@ Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi ENVPTR->DeleteLocalRef(ENVONLY, obj); } - mName = (const char * const *)member_name; + mName = (const char *const *)member_name; } if ((status = H5Pset_fapl_multi((hid_t)tid, (const H5FD_mem_t *)themapArray, (const hid_t *)thefaplArray, - mName, (const haddr_t *)theaddrArray, (hbool_t)relax)) < 0) + mName, (const haddr_t *)theaddrArray, (hbool_t)relax)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (memb_name && mName) { @@ -669,14 +664,17 @@ Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); for (i = 0; i < H5FD_MEM_NTYPES; i++) { - if (!member_name[i]) continue; + if (!member_name[i]) + continue; if (NULL == (rstring = ENVPTR->NewStringUTF(ENVONLY, member_name[i]))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pset_fapl_multi: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, + "H5Pset_fapl_multi: out of memory - unable to construct string from UTF characters"); } - if (NULL == (o = ENVPTR->GetObjectArrayElement(ENVONLY, memb_name, (jsize) i))) { + if (NULL == (o = ENVPTR->GetObjectArrayElement(ENVONLY, memb_name, (jsize)i))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); /* @@ -687,7 +685,7 @@ Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi } if (JNI_TRUE == (bb = ENVPTR->IsInstanceOf(ENVONLY, o, Sjc))) { - ENVPTR->SetObjectArrayElement(ENVONLY, memb_name, (jsize) i, (jobject)rstring); + ENVPTR->SetObjectArrayElement(ENVONLY, memb_name, (jsize)i, (jobject)rstring); CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); } @@ -720,20 +718,19 @@ done: * Signature: (J[I[J[Ljava/lang/String;[J)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1fapl_1multi - (JNIEnv *env, jclass clss, jlong tid, jintArray memb_map, - jlongArray memb_fapl, jobjectArray memb_name, jlongArray memb_addr) +Java_hdf_hdf5lib_H5_H5Pget_1fapl_1multi(JNIEnv *env, jclass clss, jlong tid, jintArray memb_map, + jlongArray memb_fapl, jobjectArray memb_name, jlongArray memb_addr) { - jboolean isCopy; - jstring str; - herr_t status = FAIL; - size_t i; - jlong *thefaplArray = NULL; - jlong *theaddrArray = NULL; - jint *themapArray = NULL; - char **mName = NULL; - int relax = 0; - int retVal = 0; + jboolean isCopy; + jstring str; + herr_t status = FAIL; + size_t i; + jlong * thefaplArray = NULL; + jlong * theaddrArray = NULL; + jint * themapArray = NULL; + char ** mName = NULL; + int relax = 0; + int retVal = 0; UNUSED(clss); @@ -744,11 +741,11 @@ Java_hdf_hdf5lib_H5_H5Pget_1fapl_1multi if (memb_addr) PIN_LONG_ARRAY(ENVONLY, memb_addr, theaddrArray, &isCopy, "H5Pget_fapl_multi: memb_addr not pinned"); if (memb_name) - if (NULL == (mName = (char **) HDcalloc(H5FD_MEM_NTYPES, sizeof(*mName)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_fapl_multi: memory allocation failed"); + if (NULL == (mName = (char **)HDcalloc(H5FD_MEM_NTYPES, sizeof(*mName)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_fapl_multi: memory allocation failed"); - if ((status = H5Pget_fapl_multi((hid_t)tid, (H5FD_mem_t *)themapArray, (hid_t *)thefaplArray, - mName, (haddr_t *)theaddrArray, (hbool_t *)&relax)) < 0) + if ((status = H5Pget_fapl_multi((hid_t)tid, (H5FD_mem_t *)themapArray, (hid_t *)thefaplArray, mName, + (haddr_t *)theaddrArray, (hbool_t *)&relax)) < 0) H5_LIBRARY_ERROR(ENVONLY); if (memb_name && mName) { @@ -756,10 +753,12 @@ Java_hdf_hdf5lib_H5_H5Pget_1fapl_1multi if (mName[i]) { if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, mName[i]))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_fapl_multi: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, + "H5Pget_fapl_multi: out of memory - unable to construct string from UTF characters"); } - ENVPTR->SetObjectArrayElement(ENVONLY, memb_name, (jsize) i, (jobject)str); + ENVPTR->SetObjectArrayElement(ENVONLY, memb_name, (jsize)i, (jobject)str); CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); ENVPTR->DeleteLocalRef(ENVONLY, str); @@ -795,17 +794,16 @@ done: * Signature: (J)Lhdf/hdf5lib/structs/H5FD_ros3_fapl_t; */ JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1fapl_1ros3 - (JNIEnv *env, jclass clss, jlong fapl_id) +Java_hdf_hdf5lib_H5_H5Pget_1fapl_1ros3(JNIEnv *env, jclass clss, jlong fapl_id) { #ifdef H5_HAVE_ROS3_VFD H5FD_ros3_fapl_t fa; jvalue args[3]; - jstring j_aws = NULL; - jstring j_id = NULL; - jstring j_key = NULL; + jstring j_aws = NULL; + jstring j_id = NULL; + jstring j_key = NULL; #endif /* H5_HAVE_ROS3_VFD */ - jobject ret_obj = NULL; + jobject ret_obj = NULL; UNUSED(clss); @@ -815,32 +813,29 @@ Java_hdf_hdf5lib_H5_H5Pget_1fapl_1ros3 if (H5Pget_fapl_ros3((hid_t)fapl_id, &fa) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (NULL != fa.aws_region) { - if (NULL == (j_aws = ENVPTR->NewStringUTF(ENVONLY, fa.aws_region))) { - CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_fapl_ros3: out of memory - can't create aws_region string"); - } + if (NULL == (j_aws = ENVPTR->NewStringUTF(ENVONLY, fa.aws_region))) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_fapl_ros3: out of memory - can't create aws_region string"); } args[0].l = j_aws; - if (NULL != fa.secret_id) { - if (NULL == (j_id = ENVPTR->NewStringUTF(ENVONLY, fa.secret_id))) { - CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_fapl_ros3: out of memory - can't create secret_id string"); - } + if (NULL == (j_id = ENVPTR->NewStringUTF(ENVONLY, fa.secret_id))) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_fapl_ros3: out of memory - can't create secret_id string"); } args[1].l = j_id; - if (NULL != fa.secret_key) { - if (NULL == (j_key = ENVPTR->NewStringUTF(ENVONLY, fa.secret_key))) { - CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_fapl_ros3: out of memory - can't create secret_key string"); - } + if (NULL == (j_key = ENVPTR->NewStringUTF(ENVONLY, fa.secret_key))) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_fapl_ros3: out of memory - can't create secret_key string"); } args[2].l = j_key; - CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5FD_ros3_fapl_t", "(Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;)V", args, ret_obj); + CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5FD_ros3_fapl_t", + "(Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;)V", args, ret_obj); #else + UNUSED(fapl_id); + H5_UNIMPLEMENTED(ENVONLY, "H5Pget_fapl_ros3: not implemented"); #endif /* H5_HAVE_ROS3_VFD */ @@ -854,15 +849,14 @@ done: * Signature: (JLhdf/hdf5lib/structs/H5FD_ros3_fapl_t;)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fapl_1ros3 - (JNIEnv *env, jclass clss, jlong fapl_id, jobject fapl_config) +Java_hdf_hdf5lib_H5_H5Pset_1fapl_1ros3(JNIEnv *env, jclass clss, jlong fapl_id, jobject fapl_config) { #ifdef H5_HAVE_ROS3_VFD - H5FD_ros3_fapl_t instance; - const char *str = NULL; - jfieldID fid; - jstring j_str; - jclass cls; + H5FD_ros3_fapl_t instance; + const char * str = NULL; + jfieldID fid; + jstring j_str; + jclass cls; #endif /* H5_HAVE_ROS3_VFD */ UNUSED(clss); @@ -933,12 +927,15 @@ Java_hdf_hdf5lib_H5_H5Pset_1fapl_1ros3 else HDmemset(instance.secret_key, 0, H5FD_ROS3_MAX_SECRET_KEY_LEN + 1); - if (instance.aws_region[0] != '\0' && instance.secret_id[0] !='\0' && instance.secret_key[0] !='\0') + if (instance.aws_region[0] != '\0' && instance.secret_id[0] != '\0' && instance.secret_key[0] != '\0') instance.authenticate = TRUE; if (H5Pset_fapl_ros3((hid_t)fapl_id, &instance) < 0) H5_LIBRARY_ERROR(ENVONLY); #else + UNUSED(fapl_id); + UNUSED(fapl_config); + H5_UNIMPLEMENTED(ENVONLY, "H5Pset_fapl_ros3: not implemented"); #endif /* H5_HAVE_ROS3_VFD */ @@ -956,11 +953,11 @@ done: * Signature: (JLjava/lang/String;JLjava/lang/String;J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fapl_1split - (JNIEnv *env, jclass clss, jlong fapl_id, jstring metaext, jlong meta_pl_id, jstring rawext, jlong raw_pl_id) +Java_hdf_hdf5lib_H5_H5Pset_1fapl_1split(JNIEnv *env, jclass clss, jlong fapl_id, jstring metaext, + jlong meta_pl_id, jstring rawext, jlong raw_pl_id) { - const char *mstr = NULL; - const char *rstr = NULL; + const char *mstr = NULL; + const char *rstr = NULL; herr_t retVal = FAIL; UNUSED(clss); @@ -989,14 +986,13 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fapl_1sec2 - (JNIEnv *env, jclass clss, jlong fapl_id) +Java_hdf_hdf5lib_H5_H5Pset_1fapl_1sec2(JNIEnv *env, jclass clss, jlong fapl_id) { herr_t retVal = FAIL; UNUSED(clss); - if ((retVal = H5Pset_fapl_sec2((hid_t) fapl_id)) < 0) + if ((retVal = H5Pset_fapl_sec2((hid_t)fapl_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -1009,14 +1005,13 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fapl_1stdio - (JNIEnv *env, jclass clss, jlong fapl_id) +Java_hdf_hdf5lib_H5_H5Pset_1fapl_1stdio(JNIEnv *env, jclass clss, jlong fapl_id) { herr_t retVal = FAIL; UNUSED(clss); - if ((retVal = H5Pset_fapl_stdio((hid_t) fapl_id)) < 0) + if ((retVal = H5Pset_fapl_stdio((hid_t)fapl_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -1029,15 +1024,14 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fapl_1windows - (JNIEnv *env, jclass clss, jlong fapl_id) +Java_hdf_hdf5lib_H5_H5Pset_1fapl_1windows(JNIEnv *env, jclass clss, jlong fapl_id) { herr_t retVal = FAIL; UNUSED(clss); #ifdef H5_HAVE_WINDOWS - if ((retVal = H5Pset_fapl_windows((hid_t) fapl_id)) < 0) + if ((retVal = H5Pset_fapl_windows((hid_t)fapl_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -1070,8 +1064,7 @@ done: * Signature: (JJ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1meta_1block_1size - (JNIEnv *env, jclass clss, jlong plist, jlong size) +Java_hdf_hdf5lib_H5_H5Pset_1meta_1block_1size(JNIEnv *env, jclass clss, jlong plist, jlong size) { long sz = (long)size; @@ -1090,8 +1083,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1meta_1block_1size - (JNIEnv *env, jclass clss, jlong plist) +Java_hdf_hdf5lib_H5_H5Pget_1meta_1block_1size(JNIEnv *env, jclass clss, jlong plist) { hsize_t s = 0; @@ -1118,8 +1110,7 @@ done: * Signature: (JJ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1sieve_1buf_1size - (JNIEnv *env, jclass clss, jlong plist, jlong size) +Java_hdf_hdf5lib_H5_H5Pset_1sieve_1buf_1size(JNIEnv *env, jclass clss, jlong plist, jlong size) { size_t sz = (size_t)size; @@ -1138,8 +1129,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1sieve_1buf_1size - (JNIEnv *env, jclass clss, jlong plist) +Java_hdf_hdf5lib_H5_H5Pget_1sieve_1buf_1size(JNIEnv *env, jclass clss, jlong plist) { size_t s = 0; @@ -1158,11 +1148,10 @@ done: * Signature: (JJJ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1alignment - (JNIEnv *env, jclass clss, jlong plist, jlong threshold, jlong alignment) +Java_hdf_hdf5lib_H5_H5Pset_1alignment(JNIEnv *env, jclass clss, jlong plist, jlong threshold, jlong alignment) { - long thr = (long)threshold; - long align = (long)alignment; + long thr = (long)threshold; + long align = (long)alignment; herr_t retVal = FAIL; UNUSED(clss); @@ -1180,15 +1169,14 @@ done: * Signature: (J[J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1alignment - (JNIEnv *env, jclass clss, jlong plist, jlongArray alignment) +Java_hdf_hdf5lib_H5_H5Pget_1alignment(JNIEnv *env, jclass clss, jlong plist, jlongArray alignment) { - jboolean isCopy; - hsize_t t = 0; - hsize_t a = 0; - jsize arrLen; - jlong *theArray = NULL; - herr_t status = FAIL; + jboolean isCopy; + hsize_t t = 0; + hsize_t a = 0; + jsize arrLen; + jlong * theArray = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -1223,16 +1211,15 @@ done: * Signature: (JIJJD)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1cache - (JNIEnv *env, jclass clss, jlong plist, jint mdc_nelmts, jlong rdcc_nelmts, - jlong rdcc_nbytes, jdouble rdcc_w0) +Java_hdf_hdf5lib_H5_H5Pset_1cache(JNIEnv *env, jclass clss, jlong plist, jint mdc_nelmts, jlong rdcc_nelmts, + jlong rdcc_nbytes, jdouble rdcc_w0) { herr_t retVal = FAIL; UNUSED(clss); - if ((retVal = H5Pset_cache((hid_t)plist, (int)mdc_nelmts, (size_t)rdcc_nelmts, - (size_t)rdcc_nbytes, (double) rdcc_w0)) < 0) + if ((retVal = H5Pset_cache((hid_t)plist, (int)mdc_nelmts, (size_t)rdcc_nelmts, (size_t)rdcc_nbytes, + (double)rdcc_w0)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -1245,15 +1232,14 @@ done: * Signature: (J[I[J[J[D)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1cache - (JNIEnv *env, jclass clss, jlong plist, jintArray mdc_nelmts, - jlongArray rdcc_nelmts, jlongArray rdcc_nbytes, jdoubleArray rdcc_w0) +Java_hdf_hdf5lib_H5_H5Pget_1cache(JNIEnv *env, jclass clss, jlong plist, jintArray mdc_nelmts, + jlongArray rdcc_nelmts, jlongArray rdcc_nbytes, jdoubleArray rdcc_w0) { - jboolean isCopy; - jdouble *w0Array = NULL; - jlong *rdcc_nelmtsArray = NULL; - jlong *nbytesArray = NULL; - herr_t status = FAIL; + jboolean isCopy; + jdouble *w0Array = NULL; + jlong * rdcc_nelmtsArray = NULL; + jlong * nbytesArray = NULL; + herr_t status = FAIL; UNUSED(clss); UNUSED(mdc_nelmts); @@ -1261,23 +1247,25 @@ Java_hdf_hdf5lib_H5_H5Pget_1cache if (NULL != rdcc_w0) PIN_DOUBLE_ARRAY(ENVONLY, rdcc_w0, w0Array, &isCopy, "H5Pget_cache: rdcc_w0 array not pinned"); if (NULL != rdcc_nelmts) - PIN_LONG_ARRAY(ENVONLY, rdcc_nelmts, rdcc_nelmtsArray, &isCopy, "H5Pget_cache: rdcc_nelmts array not pinned"); + PIN_LONG_ARRAY(ENVONLY, rdcc_nelmts, rdcc_nelmtsArray, &isCopy, + "H5Pget_cache: rdcc_nelmts array not pinned"); if (NULL != rdcc_nbytes) - PIN_LONG_ARRAY(ENVONLY, rdcc_nbytes, nbytesArray, &isCopy, "H5Pget_cache: nbytesArray array not pinned"); + PIN_LONG_ARRAY(ENVONLY, rdcc_nbytes, nbytesArray, &isCopy, + "H5Pget_cache: nbytesArray array not pinned"); { /* direct cast (size_t *)variable fails on 32-bit environment */ long long rdcc_nelmts_temp = *rdcc_nelmtsArray; - long long nbytes_temp = *nbytesArray; - size_t rdcc_nelmts_t = (size_t) rdcc_nelmts_temp; - size_t nbytes_t = (size_t) nbytes_temp; + long long nbytes_temp = *nbytesArray; + size_t rdcc_nelmts_t = (size_t)rdcc_nelmts_temp; + size_t nbytes_t = (size_t)nbytes_temp; - if ((status = H5Pget_cache((hid_t)plist, (int *)NULL, &rdcc_nelmts_t, - &nbytes_t, (double *)w0Array)) < 0) + if ((status = H5Pget_cache((hid_t)plist, (int *)NULL, &rdcc_nelmts_t, &nbytes_t, (double *)w0Array)) < + 0) H5_LIBRARY_ERROR(ENVONLY); *rdcc_nelmtsArray = (jlong)rdcc_nelmts_t; - *nbytesArray = (jlong)nbytes_t; + *nbytesArray = (jlong)nbytes_t; } /* end direct cast special */ done: @@ -1297,8 +1285,7 @@ done: * Signature: (JI)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1elink_1file_1cache_1size - (JNIEnv *env, jclass clss, jlong plist, jint size) +Java_hdf_hdf5lib_H5_H5Pset_1elink_1file_1cache_1size(JNIEnv *env, jclass clss, jlong plist, jint size) { unsigned sz = (unsigned)size; @@ -1317,8 +1304,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1elink_1file_1cache_1size - (JNIEnv *env, jclass clss, jlong plist) +Java_hdf_hdf5lib_H5_H5Pget_1elink_1file_1cache_1size(JNIEnv *env, jclass clss, jlong plist) { unsigned s = 0; @@ -1337,11 +1323,10 @@ done: * Signature: (JZ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1evict_1on_1close - (JNIEnv *env, jclass clss, jlong fapl_id, jboolean evict_on_close) +Java_hdf_hdf5lib_H5_H5Pset_1evict_1on_1close(JNIEnv *env, jclass clss, jlong fapl_id, jboolean evict_on_close) { hbool_t evict_on_close_val = FALSE; - herr_t retVal = FAIL; + herr_t retVal = FAIL; UNUSED(clss); @@ -1360,11 +1345,10 @@ done: * Signature: (J)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1evict_1on_1close - (JNIEnv *env, jclass clss, jlong fapl_id) +Java_hdf_hdf5lib_H5_H5Pget_1evict_1on_1close(JNIEnv *env, jclass clss, jlong fapl_id) { hbool_t evict_on_close_val = FALSE; - jboolean bval = JNI_FALSE; + jboolean bval = JNI_FALSE; UNUSED(clss); @@ -1379,12 +1363,81 @@ done: /* * Class: hdf_hdf5lib_H5 + * Method: H5Pset_file_locking + * Signature: (JZZ)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Pset_1file_1locking(JNIEnv *env, jclass clss, jlong fapl_id, jboolean use_file_locking, + jboolean ignore_when_disabled) +{ + hbool_t use_file_locking_val = TRUE; + hbool_t ignore_when_disabled_val = TRUE; + + UNUSED(clss); + + use_file_locking_val = (use_file_locking == JNI_TRUE) ? TRUE : FALSE; + ignore_when_disabled_val = (ignore_when_disabled == JNI_TRUE) ? TRUE : FALSE; + + if (H5Pset_file_locking((hid_t)fapl_id, use_file_locking_val, ignore_when_disabled_val) < 0) + H5_LIBRARY_ERROR(ENVONLY); + +done: + return; +} /* end Java_hdf_hdf5lib_H5_H5Pset_1file_1locking */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_use_file_locking + * Signature: (J)Z + */ +JNIEXPORT jboolean JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1use_1file_1locking(JNIEnv *env, jclass clss, jlong fapl_id) +{ + hbool_t use_file_locking_val = TRUE; + hbool_t unused = TRUE; + jboolean bval = JNI_FALSE; + + UNUSED(clss); + + if (H5Pget_file_locking((hid_t)fapl_id, &use_file_locking_val, &unused) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + bval = (use_file_locking_val == TRUE) ? JNI_TRUE : JNI_FALSE; + +done: + return bval; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1use_1file_1locking */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_ignore_disabled_file_locking + * Signature: (J)Z + */ +JNIEXPORT jboolean JNICALL +Java_hdf_hdf5lib_H5_H5Pget_1ignore_1disabled_1file_1locking(JNIEnv *env, jclass clss, jlong fapl_id) +{ + hbool_t ignore_when_disabled_val = TRUE; + hbool_t unused = TRUE; + jboolean bval = JNI_FALSE; + + UNUSED(clss); + + if (H5Pget_file_locking((hid_t)fapl_id, &unused, &ignore_when_disabled_val) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + bval = (ignore_when_disabled_val == TRUE) ? JNI_TRUE : JNI_FALSE; + +done: + return bval; +} /* end Java_hdf_hdf5lib_H5_H5Pget_1ignore_1disabled_1file_1locking */ + +/* + * Class: hdf_hdf5lib_H5 * Method: H5Pset_metadata_read_attempts * Signature: (JJ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1metadata_1read_1attempts - (JNIEnv *env, jclass clss, jlong plist_id, jlong attempts) +Java_hdf_hdf5lib_H5_H5Pset_1metadata_1read_1attempts(JNIEnv *env, jclass clss, jlong plist_id, jlong attempts) { UNUSED(clss); @@ -1404,8 +1457,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1metadata_1read_1attempts - (JNIEnv *env, jclass clss, jlong plist_id) +Java_hdf_hdf5lib_H5_H5Pget_1metadata_1read_1attempts(JNIEnv *env, jclass clss, jlong plist_id) { unsigned attempts = 0; @@ -1415,7 +1467,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1metadata_1read_1attempts H5_LIBRARY_ERROR(ENVONLY); done: - return (jlong) attempts; + return (jlong)attempts; } /* end Java_hdf_hdf5lib_H5_H5Pget_1metadata_1read_1attempts */ /* @@ -1424,18 +1476,17 @@ done: * Signature: (JLhdf/hdf5lib/structs/H5AC_cache_config_t;)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1mdc_1config - (JNIEnv *env, jclass clss, jlong plist, jobject cache_config) +Java_hdf_hdf5lib_H5_H5Pset_1mdc_1config(JNIEnv *env, jclass clss, jlong plist, jobject cache_config) { - H5AC_cache_config_t cacheinfo; - const char *str = NULL; - jfieldID fid; - jstring j_str; - jclass cls; - jint flash_incr_mode; - jint incr_mode; - jint decr_mode; - herr_t status = FAIL; + H5AC_cache_config_t cacheinfo; + const char * str = NULL; + jfieldID fid; + jstring j_str; + jclass cls; + jint flash_incr_mode; + jint incr_mode; + jint decr_mode; + herr_t status = FAIL; UNUSED(clss); @@ -1533,7 +1584,7 @@ Java_hdf_hdf5lib_H5_H5Pset_1mdc_1config incr_mode = ENVPTR->GetIntField(ENVONLY, cache_config, fid); /*(enum H5C_cache_incr_mode) */ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - cacheinfo.incr_mode = (enum H5C_cache_incr_mode) incr_mode; + cacheinfo.incr_mode = (enum H5C_cache_incr_mode)incr_mode; if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "lower_hr_threshold", "D"))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); @@ -1564,7 +1615,7 @@ Java_hdf_hdf5lib_H5_H5Pset_1mdc_1config flash_incr_mode = ENVPTR->GetIntField(ENVONLY, cache_config, fid); /*(enum H5C_cache_flash_incr_mode) */ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - cacheinfo.flash_incr_mode = (enum H5C_cache_flash_incr_mode) flash_incr_mode; + cacheinfo.flash_incr_mode = (enum H5C_cache_flash_incr_mode)flash_incr_mode; if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "flash_multiple", "D"))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); @@ -1583,7 +1634,7 @@ Java_hdf_hdf5lib_H5_H5Pset_1mdc_1config decr_mode = ENVPTR->GetIntField(ENVONLY, cache_config, fid); /*(enum H5C_cache_decr_mode) */ CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - cacheinfo.decr_mode = (enum H5C_cache_decr_mode) decr_mode; + cacheinfo.decr_mode = (enum H5C_cache_decr_mode)decr_mode; if (NULL == (fid = ENVPTR->GetFieldID(ENVONLY, cls, "upper_hr_threshold", "D"))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); @@ -1653,13 +1704,12 @@ done: * Signature: (J)Lhdf/hdf5lib/structs/H5AC_cache_config_t; */ JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1mdc_1config - (JNIEnv *env, jclass clss, jlong plist) +Java_hdf_hdf5lib_H5_H5Pget_1mdc_1config(JNIEnv *env, jclass clss, jlong plist) { H5AC_cache_config_t cacheinfo; jstring j_str = NULL; jvalue args[30]; - herr_t status = FAIL; + herr_t status = FAIL; jobject ret_obj = NULL; UNUSED(clss); @@ -1675,19 +1725,18 @@ Java_hdf_hdf5lib_H5_H5Pget_1mdc_1config args[2].z = cacheinfo.open_trace_file; args[3].z = cacheinfo.close_trace_file; - if (NULL != cacheinfo.trace_file_name) { - if (NULL == (j_str = ENVPTR->NewStringUTF(ENVONLY, cacheinfo.trace_file_name))) { - CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_mdc_config: out of memory - unable to construct string from UTF characters"); - } + if (NULL == (j_str = ENVPTR->NewStringUTF(ENVONLY, cacheinfo.trace_file_name))) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, "H5Pget_mdc_config: out of memory - unable to construct string from UTF characters"); } - args[4].l = j_str; - args[5].z = cacheinfo.evictions_enabled; - args[6].z = cacheinfo.set_initial_size; - args[7].j = (jlong)cacheinfo.initial_size; - args[8].d = cacheinfo.min_clean_fraction; - args[9].j = (jlong)cacheinfo.max_size; + args[4].l = j_str; + args[5].z = cacheinfo.evictions_enabled; + args[6].z = cacheinfo.set_initial_size; + args[7].j = (jlong)cacheinfo.initial_size; + args[8].d = cacheinfo.min_clean_fraction; + args[9].j = (jlong)cacheinfo.max_size; args[10].j = (jlong)cacheinfo.min_size; args[11].j = cacheinfo.epoch_length; args[12].i = cacheinfo.incr_mode; @@ -1709,7 +1758,8 @@ Java_hdf_hdf5lib_H5_H5Pget_1mdc_1config args[28].j = (jlong)cacheinfo.dirty_bytes_threshold; args[29].i = cacheinfo.metadata_write_strategy; - CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5AC_cache_config_t", "(IZZZLjava/lang/String;ZZJDJJJIDDZJIDDIDDZJIZDJI)V", args, ret_obj); + CALL_CONSTRUCTOR(ENVONLY, "hdf/hdf5lib/structs/H5AC_cache_config_t", + "(IZZZLjava/lang/String;ZZJDJJJIDDZJIDDIDDZJIZDJI)V", args, ret_obj); done: return ret_obj; @@ -1729,8 +1779,8 @@ done: * Signature: (JZLjava/lang/String;Z)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1mdc_1log_1options - (JNIEnv *env, jclass clss, jlong fapl_id, jboolean is_enabled, jstring location, jboolean start_on_access) +Java_hdf_hdf5lib_H5_H5Pset_1mdc_1log_1options(JNIEnv *env, jclass clss, jlong fapl_id, jboolean is_enabled, + jstring location, jboolean start_on_access) { const char *locStr = NULL; herr_t retVal = FAIL; @@ -1742,7 +1792,8 @@ Java_hdf_hdf5lib_H5_H5Pset_1mdc_1log_1options PIN_JAVA_STRING(ENVONLY, location, locStr, NULL, "H5Pset_mdc_log_options: location string not pinned"); - if ((retVal = H5Pset_mdc_log_options((hid_t)fapl_id, (hbool_t)is_enabled, locStr, (hbool_t)start_on_access)) < 0) + if ((retVal = H5Pset_mdc_log_options((hid_t)fapl_id, (hbool_t)is_enabled, locStr, + (hbool_t)start_on_access)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -1756,18 +1807,18 @@ done: * Signature: (J[Z)Ljava/lang/String; */ JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1mdc_1log_1options - (JNIEnv *env, jclass clss, jlong fapl_id, jbooleanArray mdc_log_options) +Java_hdf_hdf5lib_H5_H5Pget_1mdc_1log_1options(JNIEnv *env, jclass clss, jlong fapl_id, + jbooleanArray mdc_log_options) { - jboolean isCopy; - jboolean *mdc_log_options_ptr = NULL; - hbool_t is_enabled; - hbool_t start_on_access; - ssize_t status = -1; - size_t location_size; - jsize arrLen; - char *lname = NULL; - jstring str = NULL; + jboolean isCopy; + jboolean *mdc_log_options_ptr = NULL; + hbool_t is_enabled; + hbool_t start_on_access; + ssize_t status = -1; + size_t location_size; + jsize arrLen; + char * lname = NULL; + jstring str = NULL; UNUSED(clss); @@ -1781,7 +1832,8 @@ Java_hdf_hdf5lib_H5_H5Pget_1mdc_1log_1options if (arrLen < 2) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_mdc_log_options: length of mdc_log_options < 2"); - PIN_BOOL_ARRAY(ENVONLY, mdc_log_options, mdc_log_options_ptr, &isCopy, "H5Pget_mdc_log_options: mdc_log_options array not pinned"); + PIN_BOOL_ARRAY(ENVONLY, mdc_log_options, mdc_log_options_ptr, &isCopy, + "H5Pget_mdc_log_options: mdc_log_options array not pinned"); /* get the length of the filename */ if (H5Pget_mdc_log_options((hid_t)fapl_id, &is_enabled, NULL, &location_size, &start_on_access) < 0) @@ -1791,16 +1843,19 @@ Java_hdf_hdf5lib_H5_H5Pget_1mdc_1log_1options H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_mdc_log_options: location_size is 0"); location_size++; /* add extra space for the null terminator */ - if (NULL == (lname = (char *) HDmalloc(sizeof(char) * location_size))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_mdc_log_options: memory allocation failed"); + if (NULL == (lname = (char *)HDmalloc(sizeof(char) * location_size))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_mdc_log_options: memory allocation failed"); - if ((status = H5Pget_mdc_log_options((hid_t)fapl_id, &is_enabled, lname, &location_size, &start_on_access)) < 0) + if ((status = H5Pget_mdc_log_options((hid_t)fapl_id, &is_enabled, lname, &location_size, + &start_on_access)) < 0) H5_LIBRARY_ERROR(ENVONLY); lname[location_size - 1] = '\0'; if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, lname))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_mdc_log_options: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, + "H5Pget_mdc_log_options: out of memory - unable to construct string from UTF characters"); } mdc_log_options_ptr[0] = (jboolean)is_enabled; @@ -1837,11 +1892,10 @@ done: * Signature: (JZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1gc_1references - (JNIEnv *env, jclass clss, jlong fapl_id, jboolean gc_ref) +Java_hdf_hdf5lib_H5_H5Pset_1gc_1references(JNIEnv *env, jclass clss, jlong fapl_id, jboolean gc_ref) { unsigned gc_ref_val = 0; - herr_t retVal = FAIL; + herr_t retVal = FAIL; UNUSED(clss); @@ -1860,11 +1914,10 @@ done: * Signature: (J)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1gc_1references - (JNIEnv *env, jclass clss, jlong fapl_id) +Java_hdf_hdf5lib_H5_H5Pget_1gc_1references(JNIEnv *env, jclass clss, jlong fapl_id) { unsigned gc_ref_val = 0; - jboolean bval = JNI_FALSE; + jboolean bval = JNI_FALSE; UNUSED(clss); @@ -1883,10 +1936,9 @@ done: * Signature: (JJ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1small_1data_1block_1size - (JNIEnv *env, jclass clss, jlong plist, jlong size) +Java_hdf_hdf5lib_H5_H5Pset_1small_1data_1block_1size(JNIEnv *env, jclass clss, jlong plist, jlong size) { - long sz = (long)size; + long sz = (long)size; herr_t retVal = FAIL; UNUSED(clss); @@ -1904,8 +1956,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1small_1data_1block_1size - (JNIEnv *env, jclass clss, jlong plist) +Java_hdf_hdf5lib_H5_H5Pget_1small_1data_1block_1size(JNIEnv *env, jclass clss, jlong plist) { hsize_t s = 0; @@ -1924,8 +1975,7 @@ done: * Signature: (JII)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1libver_1bounds - (JNIEnv *env, jclass clss, jlong fapl_id, jint low, jint high) +Java_hdf_hdf5lib_H5_H5Pset_1libver_1bounds(JNIEnv *env, jclass clss, jlong fapl_id, jint low, jint high) { herr_t retVal = FAIL; @@ -1944,12 +1994,11 @@ done: * Signature: (J[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1libver_1bounds - (JNIEnv *env, jclass clss, jlong fapl_id, jintArray libver) +Java_hdf_hdf5lib_H5_H5Pget_1libver_1bounds(JNIEnv *env, jclass clss, jlong fapl_id, jintArray libver) { - jboolean isCopy; - jint *theArray = NULL; - herr_t retVal = FAIL; + jboolean isCopy; + jint * theArray = NULL; + herr_t retVal = FAIL; UNUSED(clss); @@ -1958,7 +2007,8 @@ Java_hdf_hdf5lib_H5_H5Pget_1libver_1bounds PIN_INT_ARRAY(ENVONLY, libver, theArray, &isCopy, "H5Pget_libver_bounds: input not pinned"); - if ((retVal = H5Pget_libver_bounds((hid_t)fapl_id, (H5F_libver_t *)&(theArray[0]), (H5F_libver_t *)&(theArray[1]))) < 0) + if ((retVal = H5Pget_libver_bounds((hid_t)fapl_id, (H5F_libver_t *)&(theArray[0]), + (H5F_libver_t *)&(theArray[1]))) < 0) H5_LIBRARY_ERROR(ENVONLY); done: diff --git a/java/src/jni/h5pFAPLImp.h b/java/src/jni/h5pFAPLImp.h index 9b353e6..3c5988f 100644 --- a/java/src/jni/h5pFAPLImp.h +++ b/java/src/jni/h5pFAPLImp.h @@ -1,18 +1,17 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#ifndef _Included_hdf_hdf5lib_H5_H5PFAPL -#define _Included_hdf_hdf5lib_H5_H5PFAPL +#ifndef Included_hdf_hdf5lib_H5_H5PFAPL +#define Included_hdf_hdf5lib_H5_H5PFAPL #include <jni.h> @@ -29,9 +28,7 @@ extern "C" { * Method: H5Pget_driver * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1driver -(JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Pget_1driver(JNIEnv *, jclass, jlong); /* * TODO: H5Pget_driver_info @@ -42,36 +39,29 @@ Java_hdf_hdf5lib_H5_H5Pget_1driver * Method: H5Pset_fclose_degree * Signature: (JI)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fclose_1degree -(JNIEnv *, jclass, jlong, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1fclose_1degree(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_fclose_degree * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1fclose_1degree -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1fclose_1degree(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_fapl_core * Signature: (JJZ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fapl_1core -(JNIEnv *, jclass, jlong, jlong, jboolean); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1fapl_1core(JNIEnv *, jclass, jlong, jlong, jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_fapl_core * Signature: (J[J[Z)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1fapl_1core -(JNIEnv *, jclass, jlong, jlongArray, jbooleanArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1fapl_1core(JNIEnv *, jclass, jlong, jlongArray, + jbooleanArray); /* * TODO: H5Pset_core_write_tracking @@ -86,81 +76,64 @@ Java_hdf_hdf5lib_H5_H5Pget_1fapl_1core * Method: H5Pset_fapl_direct * Signature: (JJJJ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fapl_1direct -(JNIEnv *, jclass, jlong, jlong, jlong, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1fapl_1direct(JNIEnv *, jclass, jlong, jlong, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_fapl_direct * Signature: (J[J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1fapl_1direct -(JNIEnv *, jclass, jlong, jlongArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1fapl_1direct(JNIEnv *, jclass, jlong, jlongArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_fapl_family * Signature: (JJJ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fapl_1family -(JNIEnv *, jclass, jlong, jlong, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1fapl_1family(JNIEnv *, jclass, jlong, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_fapl_family * Signature: (J[J[J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1fapl_1family -(JNIEnv *, jclass, jlong, jlongArray, jlongArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1fapl_1family(JNIEnv *, jclass, jlong, jlongArray, + jlongArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_family_offset * Signature: (JJ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1family_1offset -(JNIEnv *, jclass, jlong, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1family_1offset(JNIEnv *, jclass, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_family_offset * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1family_1offset -(JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Pget_1family_1offset(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_fapl_hdfs * Signature: (J)Lhdf/hdf5lib/structs/H5FD_hdfs_fapl_t; */ -JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1fapl_1hdfs -(JNIEnv *, jclass, jlong); +JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Pget_1fapl_1hdfs(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_fapl_hdfs * Signature: (JLhdf/hdf5lib/structs/H5FD_hdfs_fapl_t;)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fapl_1hdfs -(JNIEnv *, jclass, jlong, jobject); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1fapl_1hdfs(JNIEnv *, jclass, jlong, jobject); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_fapl_log * Signature: (JLjava/lang/String;JJ)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fapl_1log -(JNIEnv *, jclass, jlong, jstring, jlong, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1fapl_1log(JNIEnv *, jclass, jlong, jstring, jlong, jlong); /* * TODO: H5Pset_fapl_mpio @@ -183,18 +156,16 @@ Java_hdf_hdf5lib_H5_H5Pset_1fapl_1log * Method: H5Pset_fapl_multi * Signature: (J[I[J[Ljava/lang/String;[JZ)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi -(JNIEnv *, jclass, jlong, jintArray, jlongArray, jobjectArray, jlongArray, jboolean); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1fapl_1multi(JNIEnv *, jclass, jlong, jintArray, jlongArray, + jobjectArray, jlongArray, jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_fapl_multi * Signature: (J[I[J[Ljava/lang/String;[J)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1fapl_1multi -(JNIEnv *, jclass, jlong, jintArray, jlongArray, jobjectArray, jlongArray); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Pget_1fapl_1multi(JNIEnv *, jclass, jlong, jintArray, + jlongArray, jobjectArray, jlongArray); /* * TODO: H5Pset_multi_type @@ -209,54 +180,43 @@ Java_hdf_hdf5lib_H5_H5Pget_1fapl_1multi * Method: H5Pget_fapl_ros3 * Signature: (J)Lhdf/hdf5lib/structs/H5FD_ros3_fapl_t; */ -JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1fapl_1ros3 -(JNIEnv *, jclass, jlong); +JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Pget_1fapl_1ros3(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_fapl_ros3 * Signature: (JLhdf/hdf5lib/structs/H5FD_ros3_fapl_t;)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fapl_1ros3 -(JNIEnv *, jclass, jlong, jobject); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1fapl_1ros3(JNIEnv *, jclass, jlong, jobject); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_fapl_split * Signature: (JLjava/lang/String;JLjava/lang/String;J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fapl_1split -(JNIEnv *, jclass, jlong, jstring, jlong, jstring, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1fapl_1split(JNIEnv *, jclass, jlong, jstring, jlong, + jstring, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_fapl_sec2 * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fapl_1sec2 -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1fapl_1sec2(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_fapl_stdio * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fapl_1stdio -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1fapl_1stdio(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_fapl_windows * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1fapl_1windows -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1fapl_1windows(JNIEnv *, jclass, jlong); /* * TODO: H5Pset_file_image @@ -279,18 +239,14 @@ Java_hdf_hdf5lib_H5_H5Pset_1fapl_1windows * Method: H5Pset_meta_block_size * Signature: (JJ)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1meta_1block_1size -(JNIEnv *, jclass, jlong, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1meta_1block_1size(JNIEnv *, jclass, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_meta_block_size * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1meta_1block_1size -(JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Pget_1meta_1block_1size(JNIEnv *, jclass, jlong); /* * TODO: H5Pset_page_buffer_size @@ -305,126 +261,126 @@ Java_hdf_hdf5lib_H5_H5Pget_1meta_1block_1size * Method: H5Pset_sieve_buf_size * Signature: (JJ)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1sieve_1buf_1size -(JNIEnv *, jclass, jlong, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1sieve_1buf_1size(JNIEnv *, jclass, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_sieve_buf_size * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1sieve_1buf_1size -(JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Pget_1sieve_1buf_1size(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_alignment * Signature: (JJJ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1alignment -(JNIEnv *, jclass, jlong, jlong, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1alignment(JNIEnv *, jclass, jlong, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_alignment * Signature: (J[J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1alignment -(JNIEnv *, jclass, jlong, jlongArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1alignment(JNIEnv *, jclass, jlong, jlongArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_cache * Signature: (JIJJD)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1cache -(JNIEnv *, jclass, jlong, jint, jlong, jlong, jdouble); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1cache(JNIEnv *, jclass, jlong, jint, jlong, jlong, + jdouble); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_cache * Signature: (J[I[J[J[D)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1cache -(JNIEnv *, jclass, jlong, jintArray, jlongArray, jlongArray, jdoubleArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1cache(JNIEnv *, jclass, jlong, jintArray, jlongArray, + jlongArray, jdoubleArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_elink_file_cache_size * Signature: (JI)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1elink_1file_1cache_1size -(JNIEnv *, jclass, jlong, jint); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1elink_1file_1cache_1size(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_elink_file_cache_size * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1elink_1file_1cache_1size -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1elink_1file_1cache_1size(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_evict_on_close * Signature: (JZ)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1evict_1on_1close -(JNIEnv *, jclass, jlong, jboolean); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1evict_1on_1close(JNIEnv *, jclass, jlong, jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_evict_on_close * Signature: (J)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1evict_1on_1close -(JNIEnv *, jclass, jlong); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Pget_1evict_1on_1close(JNIEnv *, jclass, jlong); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pset_file_locking + * Signature: (JZZ)V + */ +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1file_1locking(JNIEnv *env, jclass clss, jlong fapl_id, + jboolean use_file_locking, + jboolean ignore_when_disabled); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_use_file_locking + * Signature: (J)Z + */ +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Pget_1use_1file_1locking(JNIEnv *env, jclass clss, + jlong fapl_id); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Pget_ignore_disabled_file_locking + * Signature: (J)Z + */ +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Pget_1ignore_1disabled_1file_1locking(JNIEnv *env, + jclass clss, + jlong fapl_id); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_metadata_read_attempts * Signature: (JJ)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1metadata_1read_1attempts -(JNIEnv *, jclass, jlong, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1metadata_1read_1attempts(JNIEnv *, jclass, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_metadata_read_attempts * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1metadata_1read_1attempts -(JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Pget_1metadata_1read_1attempts(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_mdc_config * Signature: (JLhdf/hdf5lib/structs/H5AC_cache_config_t;)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1mdc_1config -(JNIEnv *, jclass, jlong, jobject); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1mdc_1config(JNIEnv *, jclass, jlong, jobject); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_mdc_config * Signature: (J)Lhdf/hdf5lib/structs/H5AC_cache_config_t; */ -JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1mdc_1config -(JNIEnv *, jclass, jlong); +JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5Pget_1mdc_1config(JNIEnv *, jclass, jlong); /* * TODO: H5Pset_mdc_image_config @@ -439,18 +395,16 @@ Java_hdf_hdf5lib_H5_H5Pget_1mdc_1config * Method: H5Pset_mdc_log_options * Signature: (JZLjava/lang/String;Z)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1mdc_1log_1options -(JNIEnv *, jclass, jlong, jboolean, jstring, jboolean); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1mdc_1log_1options(JNIEnv *, jclass, jlong, jboolean, + jstring, jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_mdc_log_options * Signature: (J[Z)Ljava/lang/String; */ -JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1mdc_1log_1options -(JNIEnv *, jclass, jlong, jbooleanArray); +JNIEXPORT jstring JNICALL Java_hdf_hdf5lib_H5_H5Pget_1mdc_1log_1options(JNIEnv *, jclass, jlong, + jbooleanArray); /* * TODO: H5Pset_all_coll_metadata_ops @@ -473,54 +427,42 @@ Java_hdf_hdf5lib_H5_H5Pget_1mdc_1log_1options * Method: H5Pset_gc_references * Signature: (JZ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1gc_1references -(JNIEnv *, jclass, jlong, jboolean); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1gc_1references(JNIEnv *, jclass, jlong, jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_gc_references * Signature: (J)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1gc_1references -(JNIEnv *, jclass, jlong); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Pget_1gc_1references(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_small_data_block_size * Signature: (JJ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1small_1data_1block_1size -(JNIEnv *, jclass, jlong, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1small_1data_1block_1size(JNIEnv *, jclass, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_small_data_block_size * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1small_1data_1block_1size -(JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Pget_1small_1data_1block_1size(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_libver_bounds * Signature: (JII)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1libver_1bounds -(JNIEnv *, jclass, jlong, jint, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1libver_1bounds(JNIEnv *, jclass, jlong, jint, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_libver_bounds * Signature: (J[I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1libver_1bounds -(JNIEnv *, jclass, jlong, jintArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1libver_1bounds(JNIEnv *, jclass, jlong, jintArray); /* * TODO: H5Pset_object_flush_cb @@ -534,4 +476,4 @@ Java_hdf_hdf5lib_H5_H5Pget_1libver_1bounds } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5PFAPL */ +#endif /* Included_hdf_hdf5lib_H5_H5PFAPL */ diff --git a/java/src/jni/h5pFCPLImp.c b/java/src/jni/h5pFCPLImp.c index 2160496..ded3248 100644 --- a/java/src/jni/h5pFCPLImp.c +++ b/java/src/jni/h5pFCPLImp.c @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -37,10 +36,9 @@ extern "C" { * Signature: (JJ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1userblock - (JNIEnv *env, jclass clss, jlong plist, jlong size) +Java_hdf_hdf5lib_H5_H5Pset_1userblock(JNIEnv *env, jclass clss, jlong plist, jlong size) { - long sz = (long) size; + long sz = (long)size; herr_t retVal = FAIL; UNUSED(clss); @@ -58,13 +56,12 @@ done: * Signature: (J[J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1userblock - (JNIEnv *env, jclass clss, jlong plist, jlongArray size) +Java_hdf_hdf5lib_H5_H5Pget_1userblock(JNIEnv *env, jclass clss, jlong plist, jlongArray size) { - jboolean isCopy; - hsize_t s; - jlong *theArray = NULL; - herr_t status = FAIL; + jboolean isCopy; + hsize_t s; + jlong * theArray = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -91,8 +88,7 @@ done: * Signature: (JII)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1sizes - (JNIEnv *env, jclass clss, jlong plist, jint sizeof_addr, jint sizeof_size) +Java_hdf_hdf5lib_H5_H5Pset_1sizes(JNIEnv *env, jclass clss, jlong plist, jint sizeof_addr, jint sizeof_size) { herr_t retVal = FAIL; @@ -111,15 +107,14 @@ done: * Signature: (J[J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1sizes - (JNIEnv *env, jclass clss, jlong plist, jlongArray size) +Java_hdf_hdf5lib_H5_H5Pget_1sizes(JNIEnv *env, jclass clss, jlong plist, jlongArray size) { - jboolean isCopy; - jlong *theArray = NULL; - jsize arrLen; - size_t ss; - size_t sa; - herr_t status = FAIL; + jboolean isCopy; + jlong * theArray = NULL; + jsize arrLen; + size_t ss; + size_t sa; + herr_t status = FAIL; UNUSED(clss); @@ -154,8 +149,7 @@ done: * Signature: (JII)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1sym_1k - (JNIEnv *env, jclass clss, jlong plist, jint ik, jint lk) +Java_hdf_hdf5lib_H5_H5Pset_1sym_1k(JNIEnv *env, jclass clss, jlong plist, jint ik, jint lk) { herr_t retVal = FAIL; @@ -174,13 +168,12 @@ done: * Signature: (J[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1sym_1k - (JNIEnv *env, jclass clss, jlong plist, jintArray size) +Java_hdf_hdf5lib_H5_H5Pget_1sym_1k(JNIEnv *env, jclass clss, jlong plist, jintArray size) { - jboolean isCopy; - jsize arrLen; - jint *theArray = NULL; - herr_t status = FAIL; + jboolean isCopy; + jsize arrLen; + jint * theArray = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -212,8 +205,7 @@ done: * Signature: (JI)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1istore_1k - (JNIEnv *env, jclass clss, jlong plist, jint ik) +Java_hdf_hdf5lib_H5_H5Pset_1istore_1k(JNIEnv *env, jclass clss, jlong plist, jint ik) { herr_t retVal = FAIL; @@ -232,12 +224,11 @@ done: * Signature: (J[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1istore_1k - (JNIEnv *env, jclass clss, jlong plist, jintArray ik) +Java_hdf_hdf5lib_H5_H5Pget_1istore_1k(JNIEnv *env, jclass clss, jlong plist, jintArray ik) { - jboolean isCopy; - jint *theArray = NULL; - herr_t status = FAIL; + jboolean isCopy; + jint * theArray = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -262,8 +253,7 @@ done: * Signature: (JJ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1page_1size - (JNIEnv *env, jclass clss, jlong fcpl_id, jlong fsp_size) +Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1page_1size(JNIEnv *env, jclass clss, jlong fcpl_id, jlong fsp_size) { UNUSED(clss); @@ -280,8 +270,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1page_1size - (JNIEnv *env, jclass clss, jlong fcpl_id) +Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1page_1size(JNIEnv *env, jclass clss, jlong fcpl_id) { hsize_t fsp_size = 0; @@ -300,12 +289,13 @@ done: * Signature: (JIZJ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1strategy - (JNIEnv *env, jclass clss, jlong fcpl_id, jint strategy, jboolean persist, jlong threshold) +Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1strategy(JNIEnv *env, jclass clss, jlong fcpl_id, jint strategy, + jboolean persist, jlong threshold) { UNUSED(clss); - if (H5Pset_file_space_strategy((hid_t)fcpl_id, (H5F_fspace_strategy_t)strategy, (hbool_t)persist, (hsize_t)threshold) < 0) + if (H5Pset_file_space_strategy((hid_t)fcpl_id, (H5F_fspace_strategy_t)strategy, (hbool_t)persist, + (hsize_t)threshold) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -318,23 +308,25 @@ done: * Signature: (J[Z[J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy - (JNIEnv *env, jclass clss, jlong fcpl_id, jbooleanArray persist, jlongArray threshold) +Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy(JNIEnv *env, jclass clss, jlong fcpl_id, + jbooleanArray persist, jlongArray threshold) { - H5F_fspace_strategy_t thestrategy = H5F_FSPACE_STRATEGY_FSM_AGGR; /* Library default */ - jboolean isCopy; - jboolean *persistArray = NULL; - jlong *thresholdArray = NULL; - herr_t status = FAIL; + H5F_fspace_strategy_t thestrategy = H5F_FSPACE_STRATEGY_FSM_AGGR; /* Library default */ + jboolean isCopy; + jboolean * persistArray = NULL; + jlong * thresholdArray = NULL; + herr_t status = FAIL; UNUSED(clss); if (persist) PIN_BOOL_ARRAY(ENVONLY, persist, persistArray, &isCopy, "H5Pget_file_space: persist not pinned"); if (threshold) - PIN_LONG_ARRAY(ENVONLY, threshold, thresholdArray, &isCopy, "H5Pget_file_space: threshold not pinned"); + PIN_LONG_ARRAY(ENVONLY, threshold, thresholdArray, &isCopy, + "H5Pget_file_space: threshold not pinned"); - if ((status = H5Pget_file_space_strategy((hid_t)fcpl_id, &thestrategy, (hbool_t *)persistArray, (hsize_t *)thresholdArray)) < 0) + if ((status = H5Pget_file_space_strategy((hid_t)fcpl_id, &thestrategy, (hbool_t *)persistArray, + (hsize_t *)thresholdArray)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -352,11 +344,10 @@ done: * Signature: (J)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1persist - (JNIEnv *env, jclass clss, jlong fcpl_id) +Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1persist(JNIEnv *env, jclass clss, jlong fcpl_id) { hbool_t persist = FALSE; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -373,11 +364,10 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1threshold - (JNIEnv *env, jclass clss, jlong fcpl_id) +Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1threshold(JNIEnv *env, jclass clss, jlong fcpl_id) { hsize_t threshold = 0; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -394,15 +384,16 @@ done: * Signature: (JI)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1nindexes - (JNIEnv *env, jclass clss, jlong plist_id, jint nindexes) +Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1nindexes(JNIEnv *env, jclass clss, jlong plist_id, jint nindexes) { herr_t retVal = FAIL; UNUSED(clss); if (nindexes > H5O_SHMESG_MAX_NINDEXES) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_shared_mesg_nindexes: number of indexes is greater than H5O_SHMESG_MAX_NINDEXES"); + H5_BAD_ARGUMENT_ERROR( + ENVONLY, + "H5Pset_shared_mesg_nindexes: number of indexes is greater than H5O_SHMESG_MAX_NINDEXES"); if ((retVal = H5Pset_shared_mesg_nindexes((hid_t)plist_id, (unsigned)nindexes)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -417,8 +408,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1nindexes - (JNIEnv *env, jclass clss, jlong fcpl_id) +Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1nindexes(JNIEnv *env, jclass clss, jlong fcpl_id) { unsigned nindexes; @@ -437,9 +427,8 @@ done: * Signature: (JIII)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1index - (JNIEnv *env, jclass clss, jlong fcpl_id, jint index_num, - jint mesg_type_flags, jint min_mesg_size) +Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1index(JNIEnv *env, jclass clss, jlong fcpl_id, jint index_num, + jint mesg_type_flags, jint min_mesg_size) { unsigned nindexes; /* Number of SOHM indexes */ herr_t retVal = FAIL; @@ -447,7 +436,7 @@ Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1index UNUSED(clss); /* Check arguments */ - if ((unsigned) mesg_type_flags > H5O_SHMESG_ALL_FLAG) + if ((unsigned)mesg_type_flags > H5O_SHMESG_ALL_FLAG) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_shared_mesg_index: unrecognized flags in mesg_type_flags"); /* Read the current number of indexes */ @@ -455,10 +444,11 @@ Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1index H5_LIBRARY_ERROR(ENVONLY); /* Range check */ - if ((unsigned) index_num >= nindexes) + if ((unsigned)index_num >= nindexes) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_shared_mesg_index: index_num is too large; no such index"); - if ((retVal = H5Pset_shared_mesg_index((hid_t)fcpl_id, (unsigned)index_num, (unsigned) mesg_type_flags, (unsigned) min_mesg_size)) < 0) + if ((retVal = H5Pset_shared_mesg_index((hid_t)fcpl_id, (unsigned)index_num, (unsigned)mesg_type_flags, + (unsigned)min_mesg_size)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -471,13 +461,13 @@ done: * Signature: (JI[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1index - (JNIEnv *env, jclass clss, jlong fcpl_id, jint index_num, jintArray mesg_info) +Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1index(JNIEnv *env, jclass clss, jlong fcpl_id, jint index_num, + jintArray mesg_info) { - jboolean isCopy; - unsigned nindexes; /* Number of SOHM indexes */ - jint *theArray = NULL; - herr_t retVal = FAIL; + jboolean isCopy; + unsigned nindexes; /* Number of SOHM indexes */ + jint * theArray = NULL; + herr_t retVal = FAIL; UNUSED(clss); @@ -489,12 +479,13 @@ Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1index H5_LIBRARY_ERROR(ENVONLY); /* Range check */ - if ((unsigned) index_num >= nindexes) + if ((unsigned)index_num >= nindexes) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pget_shared_mesg_index: index_num is too large; no such index"); PIN_INT_ARRAY(ENVONLY, mesg_info, theArray, &isCopy, "H5Pget_shared_mesg_index: input not pinned"); - if ((retVal = H5Pget_shared_mesg_index((hid_t)fcpl_id, (unsigned)index_num, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]))) < 0) + if ((retVal = H5Pget_shared_mesg_index((hid_t)fcpl_id, (unsigned)index_num, (unsigned *)&(theArray[0]), + (unsigned *)&(theArray[1]))) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -510,8 +501,8 @@ done: * Signature: (JII)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1phase_1change - (JNIEnv *env, jclass clss, jlong fcpl_id, jint max_list, jint min_btree) +Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1phase_1change(JNIEnv *env, jclass clss, jlong fcpl_id, + jint max_list, jint min_btree) { herr_t retVal = FAIL; @@ -524,13 +515,20 @@ Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1phase_1change */ if (max_list + 1 < min_btree) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_shared_mesg_phase_change: minimum B-tree value is greater than maximum list value"); + H5_BAD_ARGUMENT_ERROR( + ENVONLY, + "H5Pset_shared_mesg_phase_change: minimum B-tree value is greater than maximum list value"); if (max_list > H5O_SHMESG_MAX_LIST_SIZE) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_shared_mesg_phase_change: max list value is larger than H5O_SHMESG_MAX_LIST_SIZE"); + H5_BAD_ARGUMENT_ERROR( + ENVONLY, + "H5Pset_shared_mesg_phase_change: max list value is larger than H5O_SHMESG_MAX_LIST_SIZE"); if (min_btree > H5O_SHMESG_MAX_LIST_SIZE) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_shared_mesg_phase_change: min btree value is larger than H5O_SHMESG_MAX_LIST_SIZE"); + H5_BAD_ARGUMENT_ERROR( + ENVONLY, + "H5Pset_shared_mesg_phase_change: min btree value is larger than H5O_SHMESG_MAX_LIST_SIZE"); - if ((retVal = H5Pset_shared_mesg_phase_change((hid_t)fcpl_id, (unsigned)max_list, (unsigned)min_btree)) < 0) + if ((retVal = H5Pset_shared_mesg_phase_change((hid_t)fcpl_id, (unsigned)max_list, (unsigned)min_btree)) < + 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -543,12 +541,12 @@ done: * Signature: (J[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1phase_1change - (JNIEnv *env, jclass clss, jlong fcpl_id, jintArray size) +Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1phase_1change(JNIEnv *env, jclass clss, jlong fcpl_id, + jintArray size) { - jboolean isCopy; - jint *theArray = NULL; - herr_t retVal = FAIL; + jboolean isCopy; + jint * theArray = NULL; + herr_t retVal = FAIL; UNUSED(clss); @@ -557,7 +555,8 @@ Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1phase_1change PIN_INT_ARRAY(ENVONLY, size, theArray, &isCopy, "H5Pget_shared_mesg_phase_change: input not pinned"); - if ((retVal = H5Pget_shared_mesg_phase_change((hid_t)fcpl_id, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]))) < 0) + if ((retVal = H5Pget_shared_mesg_phase_change((hid_t)fcpl_id, (unsigned *)&(theArray[0]), + (unsigned *)&(theArray[1]))) < 0) H5_LIBRARY_ERROR(ENVONLY); done: diff --git a/java/src/jni/h5pFCPLImp.h b/java/src/jni/h5pFCPLImp.h index 57fcae8..94411d6 100644 --- a/java/src/jni/h5pFCPLImp.h +++ b/java/src/jni/h5pFCPLImp.h @@ -1,18 +1,17 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#ifndef _Included_hdf_hdf5lib_H5_H5PFCPL -#define _Included_hdf_hdf5lib_H5_H5PFCPL +#ifndef Included_hdf_hdf5lib_H5_H5PFCPL +#define Included_hdf_hdf5lib_H5_H5PFCPL #include <jni.h> @@ -25,183 +24,150 @@ extern "C" { * Method: H5Pset_userblock * Signature: (JJ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1userblock -(JNIEnv *, jclass, jlong, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1userblock(JNIEnv *, jclass, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_userblock * Signature: (J[J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1userblock -(JNIEnv *, jclass, jlong, jlongArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1userblock(JNIEnv *, jclass, jlong, jlongArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_sizes * Signature: (JII)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1sizes -(JNIEnv *, jclass, jlong, jint, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1sizes(JNIEnv *, jclass, jlong, jint, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_sizes * Signature: (J[J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1sizes -(JNIEnv *, jclass, jlong, jlongArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1sizes(JNIEnv *, jclass, jlong, jlongArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_sym_k * Signature: (JII)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1sym_1k -(JNIEnv *, jclass, jlong, jint, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1sym_1k(JNIEnv *, jclass, jlong, jint, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_sym_k * Signature: (J[I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1sym_1k -(JNIEnv *, jclass, jlong, jintArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1sym_1k(JNIEnv *, jclass, jlong, jintArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_istore_k * Signature: (JI)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1istore_1k -(JNIEnv *, jclass, jlong, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1istore_1k(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_istore_k * Signature: (J[I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1istore_1k -(JNIEnv *, jclass, jlong, jintArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1istore_1k(JNIEnv *, jclass, jlong, jintArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_file_space_page_size * Signature: (JJ)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1page_1size -(JNIEnv *, jclass, jlong, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1page_1size(JNIEnv *, jclass, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_file_space_page_size * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1page_1size -(JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1page_1size(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_file_space_strategy * Signature: (JIZJ)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1strategy -(JNIEnv *, jclass, jlong, jint, jboolean, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1file_1space_1strategy(JNIEnv *, jclass, jlong, jint, + jboolean, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_file_space_strategy * Signature: (J[Z[J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy -(JNIEnv *, jclass, jlong, jbooleanArray, jlongArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy(JNIEnv *, jclass, jlong, + jbooleanArray, jlongArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_file_space_strategy_persist * Signature: (J)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1persist -(JNIEnv *, jclass, jlong); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1persist(JNIEnv *, jclass, + jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_file_space_strategy_threshold * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1threshold -(JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Pget_1file_1space_1strategy_1threshold(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_shared_mesg_nindexes * Signature: (JI)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1nindexes -(JNIEnv *, jclass, jlong, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1nindexes(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_shared_mesg_nindexes * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1nindexes -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1nindexes(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_shared_mesg_index * Signature: (JIII)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1index -(JNIEnv *, jclass, jlong, jint, jint, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1index(JNIEnv *, jclass, jlong, jint, jint, + jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_shared_mesg_index * Signature: (JI[I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1index -(JNIEnv *, jclass, jlong, jint, jintArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1index(JNIEnv *, jclass, jlong, jint, + jintArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_shared_mesg_phase_change * Signature: (JII)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1phase_1change -(JNIEnv *, jclass, jlong, jint, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1shared_1mesg_1phase_1change(JNIEnv *, jclass, jlong, jint, + jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_shared_mesg_phase_change * Signature: (J[I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1phase_1change -(JNIEnv *, jclass, jlong, jintArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1shared_1mesg_1phase_1change(JNIEnv *, jclass, jlong, + jintArray); #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5PFCPL */ +#endif /* Included_hdf_hdf5lib_H5_H5PFCPL */ diff --git a/java/src/jni/h5pGAPLImp.c b/java/src/jni/h5pGAPLImp.c index 9540387..b92e180 100644 --- a/java/src/jni/h5pGAPLImp.c +++ b/java/src/jni/h5pGAPLImp.c @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ diff --git a/java/src/jni/h5pGAPLImp.h b/java/src/jni/h5pGAPLImp.h index 73ad4a8..9091ff8 100644 --- a/java/src/jni/h5pGAPLImp.h +++ b/java/src/jni/h5pGAPLImp.h @@ -1,18 +1,17 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#ifndef _Included_hdf_hdf5lib_H5_H5PGAPL -#define _Included_hdf_hdf5lib_H5_H5PGAPL +#ifndef Included_hdf_hdf5lib_H5_H5PGAPL +#define Included_hdf_hdf5lib_H5_H5PGAPL #include <jni.h> @@ -24,4 +23,4 @@ extern "C" { } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5PGAPL */ +#endif /* Included_hdf_hdf5lib_H5_H5PGAPL */ diff --git a/java/src/jni/h5pGCPLImp.c b/java/src/jni/h5pGCPLImp.c index 2ba1c7d..2ba140d 100644 --- a/java/src/jni/h5pGCPLImp.c +++ b/java/src/jni/h5pGCPLImp.c @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -37,8 +36,7 @@ extern "C" { * Signature: (JJ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1local_1heap_1size_1hint - (JNIEnv *env, jclass clss, jlong gcpl_id, jlong size_hint) +Java_hdf_hdf5lib_H5_H5Pset_1local_1heap_1size_1hint(JNIEnv *env, jclass clss, jlong gcpl_id, jlong size_hint) { herr_t retVal = FAIL; @@ -57,8 +55,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1local_1heap_1size_1hint - (JNIEnv *env, jclass clss, jlong gcpl_id) +Java_hdf_hdf5lib_H5_H5Pget_1local_1heap_1size_1hint(JNIEnv *env, jclass clss, jlong gcpl_id) { size_t size_hint = 0; @@ -77,8 +74,8 @@ done: * Signature: (JI)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1link_1creation_1order - (JNIEnv *env, jclass clss, jlong gcpl_id, jint crt_order_flags) +Java_hdf_hdf5lib_H5_H5Pset_1link_1creation_1order(JNIEnv *env, jclass clss, jlong gcpl_id, + jint crt_order_flags) { herr_t retVal = FAIL; @@ -97,8 +94,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1link_1creation_1order - (JNIEnv *env, jclass clss, jlong gcpl_id) +Java_hdf_hdf5lib_H5_H5Pget_1link_1creation_1order(JNIEnv *env, jclass clss, jlong gcpl_id) { unsigned crt_order_flags; @@ -117,8 +113,8 @@ done: * Signature: (JII)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1est_1link_1info - (JNIEnv *env, jclass clss, jlong gcpl_id, jint est_num_entries, jint est_name_len) +Java_hdf_hdf5lib_H5_H5Pset_1est_1link_1info(JNIEnv *env, jclass clss, jlong gcpl_id, jint est_num_entries, + jint est_name_len) { herr_t retVal = FAIL; @@ -126,9 +122,11 @@ Java_hdf_hdf5lib_H5_H5Pset_1est_1link_1info /* Range check values */ if ((est_num_entries > 65535) || (est_name_len > 65535)) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_est_link_info: est. name length or number of entries must be < 65536"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, + "H5Pset_est_link_info: est. name length or number of entries must be < 65536"); - if ((retVal = H5Pset_est_link_info((hid_t)gcpl_id, (unsigned)est_num_entries, (unsigned)est_name_len)) < 0) + if ((retVal = H5Pset_est_link_info((hid_t)gcpl_id, (unsigned)est_num_entries, (unsigned)est_name_len)) < + 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -141,12 +139,11 @@ done: * Signature: (J[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1est_1link_1info - (JNIEnv *env, jclass clss, jlong gcpl_id, jintArray link_info) +Java_hdf_hdf5lib_H5_H5Pget_1est_1link_1info(JNIEnv *env, jclass clss, jlong gcpl_id, jintArray link_info) { - jboolean isCopy; - jint *theArray = NULL; - herr_t retVal = FAIL; + jboolean isCopy; + jint * theArray = NULL; + herr_t retVal = FAIL; UNUSED(clss); @@ -155,7 +152,8 @@ Java_hdf_hdf5lib_H5_H5Pget_1est_1link_1info PIN_INT_ARRAY(ENVONLY, link_info, theArray, &isCopy, "H5Pget_est_link_info: input not pinned"); - if ((retVal = H5Pget_est_link_info((hid_t)gcpl_id, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]))) < 0) + if ((retVal = H5Pget_est_link_info((hid_t)gcpl_id, (unsigned *)&(theArray[0]), + (unsigned *)&(theArray[1]))) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -171,15 +169,16 @@ done: * Signature: (JII)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1link_1phase_1change - (JNIEnv *env, jclass clss, jlong gcpl_id, jint max_compact, jint min_dense) +Java_hdf_hdf5lib_H5_H5Pset_1link_1phase_1change(JNIEnv *env, jclass clss, jlong gcpl_id, jint max_compact, + jint min_dense) { herr_t retVal = FAIL; UNUSED(clss); if (max_compact < min_dense) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_link_phase_change: max compact value must be >= min dense value"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, + "H5Pset_link_phase_change: max compact value must be >= min dense value"); if (max_compact > 65535) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Pset_link_phase_change: max compact value must be < 65536"); if (min_dense > 65535) @@ -198,12 +197,11 @@ done: * Signature: (J[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1link_1phase_1change - (JNIEnv *env, jclass clss, jlong gcpl_id, jintArray links) +Java_hdf_hdf5lib_H5_H5Pget_1link_1phase_1change(JNIEnv *env, jclass clss, jlong gcpl_id, jintArray links) { - jboolean isCopy; - jint *theArray = NULL; - herr_t retVal = FAIL; + jboolean isCopy; + jint * theArray = NULL; + herr_t retVal = FAIL; UNUSED(clss); @@ -212,7 +210,8 @@ Java_hdf_hdf5lib_H5_H5Pget_1link_1phase_1change PIN_INT_ARRAY(ENVONLY, links, theArray, &isCopy, "H5Pget_link_phase_change: input not pinned"); - if ((retVal = H5Pget_link_phase_change((hid_t)gcpl_id, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]))) < 0) + if ((retVal = H5Pget_link_phase_change((hid_t)gcpl_id, (unsigned *)&(theArray[0]), + (unsigned *)&(theArray[1]))) < 0) H5_LIBRARY_ERROR(ENVONLY); done: diff --git a/java/src/jni/h5pGCPLImp.h b/java/src/jni/h5pGCPLImp.h index 9c32063..5090c3a 100644 --- a/java/src/jni/h5pGCPLImp.h +++ b/java/src/jni/h5pGCPLImp.h @@ -1,18 +1,17 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#ifndef _Included_hdf_hdf5lib_H5_H5PGCPL -#define _Included_hdf_hdf5lib_H5_H5PGCPL +#ifndef Included_hdf_hdf5lib_H5_H5PGCPL +#define Included_hdf_hdf5lib_H5_H5PGCPL #include <jni.h> @@ -25,75 +24,59 @@ extern "C" { * Method: H5Pset_local_heap_size_hint * Signature: (JJ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1local_1heap_1size_1hint -(JNIEnv *, jclass, jlong, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1local_1heap_1size_1hint(JNIEnv *, jclass, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_local_heap_size_hint * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1local_1heap_1size_1hint -(JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Pget_1local_1heap_1size_1hint(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_link_creation_order * Signature: (JI)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1link_1creation_1order -(JNIEnv *, jclass, jlong, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1link_1creation_1order(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_link_creation_order * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1link_1creation_1order -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1link_1creation_1order(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_est_link_info * Signature: (JII)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1est_1link_1info -(JNIEnv *, jclass, jlong, jint, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1est_1link_1info(JNIEnv *, jclass, jlong, jint, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_est_link_info * Signature: (J[I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1est_1link_1info -(JNIEnv *, jclass, jlong, jintArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1est_1link_1info(JNIEnv *, jclass, jlong, jintArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_link_phase_change * Signature: (JII)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1link_1phase_1change -(JNIEnv *, jclass, jlong, jint, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1link_1phase_1change(JNIEnv *, jclass, jlong, jint, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_link_phase_change * Signature: (J[I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1link_1phase_1change -(JNIEnv *, jclass, jlong, jintArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1link_1phase_1change(JNIEnv *, jclass, jlong, jintArray); #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5PGCPL */ +#endif /* Included_hdf_hdf5lib_H5_H5PGCPL */ diff --git a/java/src/jni/h5pImp.c b/java/src/jni/h5pImp.c index 726e08c..175794d 100644 --- a/java/src/jni/h5pImp.c +++ b/java/src/jni/h5pImp.c @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -54,7 +54,7 @@ static herr_t H5P_cls_close_cb(hid_t prop_id, void *close_data); static herr_t H5P_prp_create_cb(const char *name, size_t size, void *value); static herr_t H5P_prp_copy_cb(const char *name, size_t size, void *value); static herr_t H5P_prp_close_cb(const char *name, size_t size, void *value); -static int H5P_prp_compare_cb(void *value1, void *value2, size_t size); +static int H5P_prp_compare_cb(void *value1, void *value2, size_t size); static herr_t H5P_prp_get_cb(hid_t prop_id, const char *name, size_t size, void *value); static herr_t H5P_prp_set_cb(hid_t prop_id, const char *name, size_t size, void *value); static herr_t H5P_prp_delete_cb(hid_t prop_id, const char *name, size_t size, void *value); @@ -67,14 +67,13 @@ static herr_t H5P_iterate_cb(hid_t prop_id, const char *name, void *cb_data); * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Pcreate - (JNIEnv *env, jclass clss, jlong type) +Java_hdf_hdf5lib_H5__1H5Pcreate(JNIEnv *env, jclass clss, jlong type) { hid_t retVal = H5I_INVALID_HID; UNUSED(clss); - if ((retVal = H5Pcreate((hid_t) type)) < 0) + if ((retVal = H5Pcreate((hid_t)type)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -87,14 +86,13 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1class - (JNIEnv *env, jclass clss, jlong plist) +Java_hdf_hdf5lib_H5_H5Pget_1class(JNIEnv *env, jclass clss, jlong plist) { hid_t retVal = H5I_INVALID_HID; UNUSED(clss); - if ((retVal = H5Pget_class((hid_t) plist)) < 0) + if ((retVal = H5Pget_class((hid_t)plist)) < 0) H5_LIBRARY_ERROR(ENVONLY); /* @@ -112,14 +110,13 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Pcopy - (JNIEnv *env, jclass clss, jlong plist) +Java_hdf_hdf5lib_H5__1H5Pcopy(JNIEnv *env, jclass clss, jlong plist) { hid_t retVal = H5I_INVALID_HID; UNUSED(clss); - if ((retVal = H5Pcopy((hid_t) plist)) < 0) + if ((retVal = H5Pcopy((hid_t)plist)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -132,15 +129,14 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5__1H5Pclose - (JNIEnv *env, jclass clss, jlong plist) +Java_hdf_hdf5lib_H5__1H5Pclose(JNIEnv *env, jclass clss, jlong plist) { herr_t retVal = FAIL; UNUSED(clss); if (plist >= 0) - if ((retVal = H5Pclose((hid_t) plist)) < 0) + if ((retVal = H5Pclose((hid_t)plist)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -158,29 +154,32 @@ done: /* * Class: hdf_hdf5lib_H5 * Method: _H5Pcreate_class - * Signature: (JLjava/lang/String;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)J + * Signature: + * (JLjava/lang/String;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Pcreate_1class - (JNIEnv *env, jclass clss, jlong parent_class, jstring name, jobject create_op, - jobject create_data, jobject copy_op, jobject copy_data, jobject close_op, jobject close_data) +Java_hdf_hdf5lib_H5__1H5Pcreate_1class(JNIEnv *env, jclass clss, jlong parent_class, jstring name, + jobject create_op, jobject create_data, jobject copy_op, + jobject copy_data, jobject close_op, jobject close_data) { - const char *cstr = NULL; + const char *cstr = NULL; hid_t class_id = H5I_INVALID_HID; UNUSED(clss); create_callback = create_op; - close_callback = close_op; - copy_callback = copy_op; + close_callback = close_op; + copy_callback = copy_op; if (NULL == name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "_H5Pcreate_class: class name is NULL"); PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "_H5Pcreate_class: class name not pinned"); - if ((class_id = H5Pcreate_class((hid_t)parent_class, cstr, (H5P_cls_create_func_t)H5P_cls_create_cb, (void *) create_data, - (H5P_cls_copy_func_t)H5P_cls_copy_cb, (void *) copy_data, (H5P_cls_close_func_t)H5P_cls_close_cb, (void *) close_data)) < 0) + if ((class_id = + H5Pcreate_class((hid_t)parent_class, cstr, (H5P_cls_create_func_t)H5P_cls_create_cb, + (void *)create_data, (H5P_cls_copy_func_t)H5P_cls_copy_cb, (void *)copy_data, + (H5P_cls_close_func_t)H5P_cls_close_cb, (void *)close_data)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -193,13 +192,13 @@ done: /* * Class: hdf_hdf5lib_H5 * Method: _H5Pcreate_class_nocb - * Signature: (JLjava/lang/String;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)J + * Signature: + * (JLjava/lang/String;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Pcreate_1class_1nocb - (JNIEnv *env, jclass clss, jlong parent_class, jstring name) +Java_hdf_hdf5lib_H5__1H5Pcreate_1class_1nocb(JNIEnv *env, jclass clss, jlong parent_class, jstring name) { - const char *cstr = NULL; + const char *cstr = NULL; hid_t class_id = H5I_INVALID_HID; UNUSED(clss); @@ -209,7 +208,7 @@ Java_hdf_hdf5lib_H5__1H5Pcreate_1class_1nocb PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "_H5Pcreate_class_nocb: class name not pinned"); - if ((class_id = H5Pcreate_class((hid_t)parent_class, cstr, NULL, NULL, NULL, NULL, NULL, NULL)) < 0) + if ((class_id = H5Pcreate_class((hid_t)parent_class, cstr, NULL, NULL, NULL, NULL, NULL, NULL)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -222,39 +221,43 @@ done: /* * Class: hdf_hdf5lib_H5 * Method: H5Pregister2 - * Signature: (JLjava/lang/String;J[BLjava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)V + * Signature: + * (JLjava/lang/String;J[BLjava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pregister2 - (JNIEnv *env, jclass clss, jlong cls_id, jstring name, jlong prp_size, - jbyteArray def_value, jobject prp_create, jobject prp_set, jobject prp_get, jobject prp_delete, - jobject prp_copy, jobject prp_cmp, jobject prp_close) +Java_hdf_hdf5lib_H5_H5Pregister2(JNIEnv *env, jclass clss, jlong cls_id, jstring name, jlong prp_size, + jbyteArray def_value, jobject prp_create, jobject prp_set, jobject prp_get, + jobject prp_delete, jobject prp_copy, jobject prp_cmp, jobject prp_close) { const char *cstr = NULL; jboolean isCopy; - herr_t status = FAIL; - jbyte *propValBuf = NULL; + herr_t status = FAIL; + jbyte * propValBuf = NULL; UNUSED(clss); - copy_callback = prp_copy; - close_callback = prp_close; - create_callback = prp_create; + copy_callback = prp_copy; + close_callback = prp_close; + create_callback = prp_create; compare_callback = prp_cmp; - set_callback = prp_set; - get_callback = prp_get; - delete_callback = prp_delete; + set_callback = prp_set; + get_callback = prp_get; + delete_callback = prp_delete; if (NULL == name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pregister2: property name is NULL"); PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "H5Pregister2: property name not pinned"); - PIN_BYTE_ARRAY(ENVONLY, def_value, propValBuf, &isCopy, "H5Pregister2: default property value buffer not pinned"); + PIN_BYTE_ARRAY(ENVONLY, def_value, propValBuf, &isCopy, + "H5Pregister2: default property value buffer not pinned"); - if ((status = H5Pregister2((hid_t)cls_id, cstr, (size_t)prp_size, (void *)propValBuf, (H5P_prp_create_func_t)H5P_prp_create_cb, - (H5P_prp_set_func_t)H5P_prp_set_cb, (H5P_prp_get_func_t)H5P_prp_get_cb, (H5P_prp_delete_func_t)H5P_prp_delete_cb, - (H5P_prp_copy_func_t)H5P_prp_copy_cb, (H5P_prp_compare_func_t)H5P_prp_compare_cb, (H5P_prp_close_func_t)H5P_prp_close_cb)) < 0) + if ((status = + H5Pregister2((hid_t)cls_id, cstr, (size_t)prp_size, (void *)propValBuf, + (H5P_prp_create_func_t)H5P_prp_create_cb, (H5P_prp_set_func_t)H5P_prp_set_cb, + (H5P_prp_get_func_t)H5P_prp_get_cb, (H5P_prp_delete_func_t)H5P_prp_delete_cb, + (H5P_prp_copy_func_t)H5P_prp_copy_cb, (H5P_prp_compare_func_t)H5P_prp_compare_cb, + (H5P_prp_close_func_t)H5P_prp_close_cb)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -270,13 +273,13 @@ done: * Signature: (JLjava/lang/String;J[B)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pregister2_1nocb - (JNIEnv *env, jclass clss, jlong cls_id, jstring name, jlong prp_size, jbyteArray def_value) +Java_hdf_hdf5lib_H5_H5Pregister2_1nocb(JNIEnv *env, jclass clss, jlong cls_id, jstring name, jlong prp_size, + jbyteArray def_value) { const char *cstr = NULL; jboolean isCopy; - herr_t status = FAIL; - jbyte *propValBuf = NULL; + herr_t status = FAIL; + jbyte * propValBuf = NULL; UNUSED(clss); @@ -285,9 +288,11 @@ Java_hdf_hdf5lib_H5_H5Pregister2_1nocb PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "H5Pregister2_nocb: property name not pinned"); - PIN_BYTE_ARRAY(ENVONLY, def_value, propValBuf, &isCopy, "H5Pregister2_nocb: default property value buffer not pinned"); + PIN_BYTE_ARRAY(ENVONLY, def_value, propValBuf, &isCopy, + "H5Pregister2_nocb: default property value buffer not pinned"); - if ((status = H5Pregister2((hid_t)cls_id, cstr, (size_t)prp_size, (void *)propValBuf, NULL, NULL, NULL, NULL, NULL, NULL, NULL)) < 0) + if ((status = H5Pregister2((hid_t)cls_id, cstr, (size_t)prp_size, (void *)propValBuf, NULL, NULL, NULL, + NULL, NULL, NULL, NULL)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -300,27 +305,27 @@ done: /* * Class: hdf_hdf5lib_H5 * Method: H5Pinsert2 - * Signature: (JLjava/lang/String;J[BLjava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)V + * Signature: + * (JLjava/lang/String;J[BLjava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pinsert2 - (JNIEnv *env, jclass clss, jlong cls_id, jstring name, jlong prp_size, - jbyteArray def_value, jobject prp_set, jobject prp_get, jobject prp_delete, - jobject prp_copy, jobject prp_cmp, jobject prp_close) +Java_hdf_hdf5lib_H5_H5Pinsert2(JNIEnv *env, jclass clss, jlong cls_id, jstring name, jlong prp_size, + jbyteArray def_value, jobject prp_set, jobject prp_get, jobject prp_delete, + jobject prp_copy, jobject prp_cmp, jobject prp_close) { const char *cstr = NULL; jboolean isCopy; - herr_t status = FAIL; - jbyte *propValBuf = NULL; + herr_t status = FAIL; + jbyte * propValBuf = NULL; UNUSED(clss); - copy_callback = prp_copy; - close_callback = prp_close; + copy_callback = prp_copy; + close_callback = prp_close; compare_callback = prp_cmp; - set_callback = prp_set; - get_callback = prp_get; - delete_callback = prp_delete; + set_callback = prp_set; + get_callback = prp_get; + delete_callback = prp_delete; if (NULL == name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Pinsert2: property name is NULL"); @@ -330,8 +335,10 @@ Java_hdf_hdf5lib_H5_H5Pinsert2 PIN_BYTE_ARRAY(ENVONLY, def_value, propValBuf, &isCopy, "H5Pinsert2: property value buffer not pinned"); if ((status = H5Pinsert2((hid_t)cls_id, cstr, (size_t)prp_size, (void *)propValBuf, - (H5P_prp_set_func_t)H5P_prp_set_cb, (H5P_prp_get_func_t)H5P_prp_get_cb, (H5P_prp_delete_func_t)H5P_prp_delete_cb, - (H5P_prp_copy_func_t)H5P_prp_copy_cb, (H5P_prp_compare_func_t)H5P_prp_compare_cb, (H5P_prp_close_func_t)H5P_prp_close_cb)) < 0) + (H5P_prp_set_func_t)H5P_prp_set_cb, (H5P_prp_get_func_t)H5P_prp_get_cb, + (H5P_prp_delete_func_t)H5P_prp_delete_cb, (H5P_prp_copy_func_t)H5P_prp_copy_cb, + (H5P_prp_compare_func_t)H5P_prp_compare_cb, + (H5P_prp_close_func_t)H5P_prp_close_cb)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -347,13 +354,13 @@ done: * Signature: (JLjava/lang/String;J[B)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pinsert2_1nocb - (JNIEnv *env, jclass clss, jlong cls_id, jstring name, jlong prp_size, jbyteArray def_value) +Java_hdf_hdf5lib_H5_H5Pinsert2_1nocb(JNIEnv *env, jclass clss, jlong cls_id, jstring name, jlong prp_size, + jbyteArray def_value) { const char *cstr = NULL; jboolean isCopy; - herr_t status = FAIL; - jbyte *propValBuf = NULL; + herr_t status = FAIL; + jbyte * propValBuf = NULL; UNUSED(clss); @@ -362,9 +369,11 @@ Java_hdf_hdf5lib_H5_H5Pinsert2_1nocb PIN_JAVA_STRING(ENVONLY, name, cstr, NULL, "H5Pinsert2_nocb: property name not pinned"); - PIN_BYTE_ARRAY(ENVONLY, def_value, propValBuf, &isCopy, "H5Pinsert2_nocb: property value buffer not pinned"); + PIN_BYTE_ARRAY(ENVONLY, def_value, propValBuf, &isCopy, + "H5Pinsert2_nocb: property value buffer not pinned"); - if ((status = H5Pinsert2((hid_t)cls_id, cstr, (size_t)prp_size, (void *)propValBuf, NULL, NULL, NULL, NULL, NULL, NULL)) < 0) + if ((status = H5Pinsert2((hid_t)cls_id, cstr, (size_t)prp_size, (void *)propValBuf, NULL, NULL, NULL, + NULL, NULL, NULL)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -380,10 +389,9 @@ done: * Signature: (JLjava/lang/String;I)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pset - (JNIEnv *env, jclass clss, jlong plid, jstring name, jint val) +Java_hdf_hdf5lib_H5_H5Pset(JNIEnv *env, jclass clss, jlong plid, jstring name, jint val) { - const char *cstr = NULL; + const char *cstr = NULL; hid_t retVal = H5I_INVALID_HID; UNUSED(clss); @@ -409,8 +417,7 @@ done: * Signature: (JLjava/lang/String;)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Pexist - (JNIEnv *env, jclass clss, jlong plid, jstring name) +Java_hdf_hdf5lib_H5_H5Pexist(JNIEnv *env, jclass clss, jlong plid, jstring name) { const char *cstr = NULL; htri_t bval = JNI_FALSE; @@ -440,11 +447,10 @@ done: * Signature: (JLjava/lang/String;)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1size - (JNIEnv *env, jclass clss, jlong plid, jstring name) +Java_hdf_hdf5lib_H5_H5Pget_1size(JNIEnv *env, jclass clss, jlong plid, jstring name) { - const char *cstr = NULL; - size_t size = 0; + const char *cstr = NULL; + size_t size = 0; herr_t status = FAIL; UNUSED(clss); @@ -461,7 +467,7 @@ done: if (cstr) UNPIN_JAVA_STRING(ENVONLY, name, cstr); - return (jlong) size; + return (jlong)size; } /* end Java_hdf_hdf5lib_H5_H5Pget_1size */ /* @@ -470,8 +476,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1nprops - (JNIEnv *env, jclass clss, jlong plid) +Java_hdf_hdf5lib_H5_H5Pget_1nprops(JNIEnv *env, jclass clss, jlong plid) { size_t nprops = 0; @@ -490,11 +495,10 @@ done: * Signature: (J)Ljava/lang/String; */ JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1class_1name - (JNIEnv *env, jclass clss, jlong plid) +Java_hdf_hdf5lib_H5_H5Pget_1class_1name(JNIEnv *env, jclass clss, jlong plid) { - char *c_str = NULL; - jstring j_str = NULL; + char * c_str = NULL; + jstring j_str = NULL; UNUSED(clss); @@ -503,7 +507,8 @@ Java_hdf_hdf5lib_H5_H5Pget_1class_1name if (NULL == (j_str = ENVPTR->NewStringUTF(ENVONLY, c_str))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_class_name: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, "H5Pget_class_name: out of memory - unable to construct string from UTF characters"); } done: @@ -519,8 +524,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1class_1parent - (JNIEnv *env, jclass clss, jlong plid) +Java_hdf_hdf5lib_H5_H5Pget_1class_1parent(JNIEnv *env, jclass clss, jlong plid) { hid_t retVal = H5I_INVALID_HID; @@ -539,8 +543,7 @@ done: * Signature: (JJ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pisa_1class - (JNIEnv *env, jclass clss, jlong plid, jlong pcls) +Java_hdf_hdf5lib_H5_H5Pisa_1class(JNIEnv *env, jclass clss, jlong plid, jlong pcls) { htri_t retVal = FAIL; @@ -559,8 +562,7 @@ done: * Signature: (JLjava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget - (JNIEnv *env, jclass clss, jlong plid, jstring name) +Java_hdf_hdf5lib_H5_H5Pget(JNIEnv *env, jclass clss, jlong plid, jstring name) { const char *cstr = NULL; jint val; @@ -589,8 +591,7 @@ done: * Signature: (JJ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pequal - (JNIEnv *env, jclass clss, jlong plid1, jlong plid2) +Java_hdf_hdf5lib_H5_H5Pequal(JNIEnv *env, jclass clss, jlong plid1, jlong plid2) { htri_t retVal = FAIL; @@ -609,13 +610,13 @@ done: * Signature: (J[ILjava/lang/Object;Ljava/lang/Object;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Piterate - (JNIEnv *env, jclass clss, jlong prop_id, jintArray idx, jobject callback_op, jobject op_data) +Java_hdf_hdf5lib_H5_H5Piterate(JNIEnv *env, jclass clss, jlong prop_id, jintArray idx, jobject callback_op, + jobject op_data) { - cb_wrapper wrapper = { callback_op, op_data }; - jboolean isCopy; - jint *theArray = NULL; - herr_t status = FAIL; + cb_wrapper wrapper = {callback_op, op_data}; + jboolean isCopy; + jint * theArray = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -634,7 +635,8 @@ Java_hdf_hdf5lib_H5_H5Piterate else { PIN_INT_ARRAY(ENVONLY, idx, theArray, &isCopy, "H5Piterate: idx not pinned"); - if ((status = H5Piterate((hid_t)prop_id, (int *)&theArray[0], (H5P_iterate_t)H5P_iterate_cb, (void *)&wrapper)) < 0) + if ((status = H5Piterate((hid_t)prop_id, (int *)&theArray[0], (H5P_iterate_t)H5P_iterate_cb, + (void *)&wrapper)) < 0) H5_LIBRARY_ERROR(ENVONLY); } @@ -651,10 +653,9 @@ done: * Signature: (JJLjava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pcopy_1prop - (JNIEnv *env, jclass clss, jlong dst_plid, jlong src_plid, jstring name) +Java_hdf_hdf5lib_H5_H5Pcopy_1prop(JNIEnv *env, jclass clss, jlong dst_plid, jlong src_plid, jstring name) { - const char *cstr = NULL; + const char *cstr = NULL; herr_t retVal = FAIL; UNUSED(clss); @@ -680,10 +681,9 @@ done: * Signature: (JLjava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Premove - (JNIEnv *env, jclass clss, jlong plid, jstring name) +Java_hdf_hdf5lib_H5_H5Premove(JNIEnv *env, jclass clss, jlong plid, jstring name) { - const char *cstr = NULL; + const char *cstr = NULL; herr_t retVal = FAIL; UNUSED(clss); @@ -709,10 +709,9 @@ done: * Signature: (JLjava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Punregister - (JNIEnv *env, jclass clss, jlong plid, jstring name) +Java_hdf_hdf5lib_H5_H5Punregister(JNIEnv *env, jclass clss, jlong plid, jstring name) { - const char *cstr = NULL; + const char *cstr = NULL; herr_t retVal = FAIL; UNUSED(clss); @@ -738,8 +737,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5__1H5Pclose_1class - (JNIEnv *env, jclass clss, jlong plid) +Java_hdf_hdf5lib_H5__1H5Pclose_1class(JNIEnv *env, jclass clss, jlong plid) { herr_t retVal = FAIL; @@ -753,13 +751,12 @@ done: } /* end Java_hdf_hdf5lib_H5__1H5Pclose_1class */ static herr_t -H5P_cls_create_cb - (hid_t prop_id, void *create_data) +H5P_cls_create_cb(hid_t prop_id, void *create_data) { - jmethodID mid; - JNIEnv *cbenv = NULL; - jclass cls; - jint status = -1; + jmethodID mid; + JNIEnv * cbenv = NULL; + jclass cls; + jint status = -1; if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) { CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE); @@ -769,7 +766,8 @@ H5P_cls_create_cb if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, create_callback))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JLhdf/hdf5lib/callbacks/H5P_cls_create_func_t;)I"))) + if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", + "(JLhdf/hdf5lib/callbacks/H5P_cls_create_func_t;)I"))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); status = CBENVPTR->CallIntMethod(CBENVONLY, create_callback, mid, prop_id, create_data); @@ -783,13 +781,12 @@ done: } /* end H5P_cls_create_cb */ static herr_t -H5P_cls_copy_cb - (hid_t new_prop_id, hid_t old_prop_id, void *copy_data) +H5P_cls_copy_cb(hid_t new_prop_id, hid_t old_prop_id, void *copy_data) { - jmethodID mid; - JNIEnv *cbenv = NULL; - jclass cls; - jint status = -1; + jmethodID mid; + JNIEnv * cbenv = NULL; + jclass cls; + jint status = -1; if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) { CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE); @@ -799,7 +796,8 @@ H5P_cls_copy_cb if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, copy_callback))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JJLhdf/hdf5lib/callbacks/H5P_cls_copy_func_t;)I"))) + if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", + "(JJLhdf/hdf5lib/callbacks/H5P_cls_copy_func_t;)I"))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); status = CBENVPTR->CallIntMethod(CBENVONLY, copy_callback, mid, new_prop_id, old_prop_id, copy_data); @@ -813,13 +811,12 @@ done: } /* end H5P_cls_copy_cb */ static herr_t -H5P_cls_close_cb - (hid_t prop_id, void *close_data) +H5P_cls_close_cb(hid_t prop_id, void *close_data) { - jmethodID mid; - JNIEnv *cbenv = NULL; - jclass cls; - jint status = -1; + jmethodID mid; + JNIEnv * cbenv = NULL; + jclass cls; + jint status = -1; if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) { CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE); @@ -829,7 +826,8 @@ H5P_cls_close_cb if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, close_callback))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JLhdf/hdf5lib/callbacks/H5P_cls_close_func_t;)I"))) + if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", + "(JLhdf/hdf5lib/callbacks/H5P_cls_close_func_t;)I"))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); status = CBENVPTR->CallIntMethod(CBENVONLY, close_callback, mid, prop_id, close_data); @@ -843,14 +841,13 @@ done: } /* end H5P_cls_close_cb */ static herr_t -H5P_prp_create_cb - (const char *name, size_t size, void *value) +H5P_prp_create_cb(const char *name, size_t size, void *value) { - jmethodID mid; - jstring str; - jclass cls; - JNIEnv *cbenv = NULL; - jint status = -1; + jmethodID mid; + jstring str; + jclass cls; + JNIEnv * cbenv = NULL; + jint status = -1; if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) { CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE); @@ -877,14 +874,13 @@ done: } /* end H5P_prp_create_cb */ static herr_t -H5P_prp_set_cb - (hid_t prop_id, const char *name, size_t size, void *value) +H5P_prp_set_cb(hid_t prop_id, const char *name, size_t size, void *value) { - jmethodID mid; - jstring str; - jclass cls; - JNIEnv *cbenv = NULL; - jint status = -1; + jmethodID mid; + jstring str; + jclass cls; + JNIEnv * cbenv = NULL; + jint status = -1; if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) { CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE); @@ -911,14 +907,13 @@ done: } /* end H5P_prp_set_cb */ static herr_t -H5P_prp_get_cb - (hid_t prop_id, const char *name, size_t size, void *value) +H5P_prp_get_cb(hid_t prop_id, const char *name, size_t size, void *value) { - jmethodID mid; - jstring str; - jclass cls; - JNIEnv *cbenv = NULL; - jint status = -1; + jmethodID mid; + jstring str; + jclass cls; + JNIEnv * cbenv = NULL; + jint status = -1; if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) { CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE); @@ -945,14 +940,13 @@ done: } /* end H5P_prp_get_cb */ static herr_t -H5P_prp_delete_cb - (hid_t prop_id, const char *name, size_t size, void *value) +H5P_prp_delete_cb(hid_t prop_id, const char *name, size_t size, void *value) { - jmethodID mid; - jstring str; - jclass cls; - JNIEnv *cbenv = NULL; - jint status = -1; + jmethodID mid; + jstring str; + jclass cls; + JNIEnv * cbenv = NULL; + jint status = -1; if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) { CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE); @@ -979,14 +973,13 @@ done: } /* end H5P_prp_delete_cb */ static herr_t -H5P_prp_copy_cb - (const char *name, size_t size, void *value) +H5P_prp_copy_cb(const char *name, size_t size, void *value) { - jmethodID mid; - jstring str; - jclass cls; - JNIEnv *cbenv = NULL; - jint status = -1; + jmethodID mid; + jstring str; + jclass cls; + JNIEnv * cbenv = NULL; + jint status = -1; if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) { CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE); @@ -1013,13 +1006,12 @@ done: } /* end H5P_prp_copy_cb */ static int -H5P_prp_compare_cb - (void *value1, void *value2, size_t size) +H5P_prp_compare_cb(void *value1, void *value2, size_t size) { - jmethodID mid; - jclass cls; - JNIEnv *cbenv = NULL; - jint status = -1; + jmethodID mid; + jclass cls; + JNIEnv * cbenv = NULL; + jint status = -1; if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) { CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE); @@ -1043,14 +1035,13 @@ done: } /* end H5P_prp_compare_cb */ static herr_t -H5P_prp_close_cb - (const char *name, size_t size, void *value) +H5P_prp_close_cb(const char *name, size_t size, void *value) { - jmethodID mid; - jstring str; - jclass cls; - JNIEnv *cbenv = NULL; - jint status = -1; + jmethodID mid; + jstring str; + jclass cls; + JNIEnv * cbenv = NULL; + jint status = -1; if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) { CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE); @@ -1077,19 +1068,18 @@ done: } /* end H5P_prp_close_cb */ static herr_t -H5P_iterate_cb - (hid_t prop_id, const char *name, void *cb_data) +H5P_iterate_cb(hid_t prop_id, const char *name, void *cb_data) { - cb_wrapper *wrapper = (cb_wrapper *) cb_data; + cb_wrapper *wrapper = (cb_wrapper *)cb_data; jmethodID mid; jobject visit_callback = wrapper->visit_callback; jstring str; jclass cls; - JNIEnv *cbenv = NULL; - void *op_data = (void *) wrapper->op_data; - jint status = -1; + JNIEnv * cbenv = NULL; + void * op_data = (void *)wrapper->op_data; + jint status = -1; - if (JVMPTR->AttachCurrentThread(JVMPAR, (void**)&cbenv, NULL) < 0) { + if (JVMPTR->AttachCurrentThread(JVMPAR, (void **)&cbenv, NULL) < 0) { CHECK_JNI_EXCEPTION(CBENVONLY, JNI_TRUE); H5_JNI_FATAL_ERROR(CBENVONLY, "H5P_iterate_cb: failed to attach current thread to JVM"); } @@ -1097,7 +1087,8 @@ H5P_iterate_cb if (NULL == (cls = CBENVPTR->GetObjectClass(CBENVONLY, visit_callback))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); - if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", "(JLjava/lang/String;Lhdf/hdf5lib/callbacks/H5P_iterate_t;)I"))) + if (NULL == (mid = CBENVPTR->GetMethodID(CBENVONLY, cls, "callback", + "(JLjava/lang/String;Lhdf/hdf5lib/callbacks/H5P_iterate_t;)I"))) CHECK_JNI_EXCEPTION(CBENVONLY, JNI_FALSE); if (NULL == (str = CBENVPTR->NewStringUTF(CBENVONLY, name))) diff --git a/java/src/jni/h5pImp.h b/java/src/jni/h5pImp.h index 8318be4..189e9d7 100644 --- a/java/src/jni/h5pImp.h +++ b/java/src/jni/h5pImp.h @@ -1,20 +1,19 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* Header for class hdf_hdf5lib_H5_H5_H5P */ -#ifndef _Included_hdf_hdf5lib_H5_H5P -#define _Included_hdf_hdf5lib_H5_H5P +#ifndef Included_hdf_hdf5lib_H5_H5P +#define Included_hdf_hdf5lib_H5_H5P #include <jni.h> @@ -27,36 +26,28 @@ extern "C" { * Method: H5Pcreate * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Pcreate -(JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Pcreate(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_class * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1class -(JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Pget_1class(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pcopy * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Pcopy -(JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Pcopy(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pclose * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5__1H5Pclose -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5__1H5Pclose(JNIEnv *, jclass, jlong); /* * TODO: H5Pencode @@ -69,185 +60,154 @@ Java_hdf_hdf5lib_H5__1H5Pclose /* * Class: hdf_hdf5lib_H5 * Method: _H5Pcreate_class - * Signature: (JLjava/lang/String;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)J + * Signature: + * (JLjava/lang/String;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Pcreate_1class - (JNIEnv*, jclass, jlong, jstring, jobject, jobject, jobject, jobject, jobject, jobject); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Pcreate_1class(JNIEnv *, jclass, jlong, jstring, jobject, + jobject, jobject, jobject, jobject, jobject); /* * Class: hdf_hdf5lib_H5 * Method: _H5Pcreate_class_nocb * Signature: (JLjava/lang/String;)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Pcreate_1class_1nocb - (JNIEnv*, jclass, jlong, jstring); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Pcreate_1class_1nocb(JNIEnv *, jclass, jlong, jstring); /* * Class: hdf_hdf5lib_H5 * Method: H5Pregister2 - * Signature: (JLjava/lang/String;J[BLjava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)V + * Signature: + * (JLjava/lang/String;J[BLjava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pregister2 - (JNIEnv*, jclass, jlong, jstring, jlong, jbyteArray, jobject, jobject, jobject, jobject, jobject, jobject, jobject); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pregister2(JNIEnv *, jclass, jlong, jstring, jlong, jbyteArray, + jobject, jobject, jobject, jobject, jobject, jobject, + jobject); /* * Class: hdf_hdf5lib_H5 * Method: H5Pregister2_nocb * Signature: (JLjava/lang/String;J[B)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pregister2_1nocb - (JNIEnv*, jclass, jlong, jstring, jlong, jbyteArray); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pregister2_1nocb(JNIEnv *, jclass, jlong, jstring, jlong, + jbyteArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pinsert2 - * Signature: (JLjava/lang/String;J[BLjava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)V + * Signature: + * (JLjava/lang/String;J[BLjava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;Ljava/lang/Object;)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pinsert2 - (JNIEnv*, jclass, jlong, jstring, jlong, jbyteArray, jobject, jobject, jobject, jobject, jobject, jobject); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pinsert2(JNIEnv *, jclass, jlong, jstring, jlong, jbyteArray, + jobject, jobject, jobject, jobject, jobject, jobject); /* * Class: hdf_hdf5lib_H5 * Method: H5Pinsert2_nocb * Signature: (JLjava/lang/String;J[B)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pinsert2_1nocb - (JNIEnv*, jclass, jlong, jstring, jlong, jbyteArray); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pinsert2_1nocb(JNIEnv *, jclass, jlong, jstring, jlong, + jbyteArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset * Signature: (JLjava/lang/String;I)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pset -(JNIEnv *, jclass, jlong, jstring, jint); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Pset(JNIEnv *, jclass, jlong, jstring, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Pexist * Signature: (JLjava/lang/String;)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Pexist -(JNIEnv *, jclass, jlong, jstring); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Pexist(JNIEnv *, jclass, jlong, jstring); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_size * Signature: (JLjava/lang/String;)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1size -(JNIEnv *, jclass, jlong, jstring); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Pget_1size(JNIEnv *, jclass, jlong, jstring); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_nprops * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1nprops -(JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Pget_1nprops(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_class_name * Signature: (J)Ljava/lang/String; */ -JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1class_1name -(JNIEnv *, jclass, jlong); +JNIEXPORT jstring JNICALL Java_hdf_hdf5lib_H5_H5Pget_1class_1name(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_class_parent * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1class_1parent -(JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Pget_1class_1parent(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pisa_class * Signature: (JJ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pisa_1class -(JNIEnv *, jclass, jlong, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pisa_1class(JNIEnv *, jclass, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget * Signature: (JLjava/lang/String;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget -(JNIEnv *, jclass, jlong, jstring); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget(JNIEnv *, jclass, jlong, jstring); /* * Class: hdf_hdf5lib_H5 * Method: H5Pequal * Signature: (JJ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pequal -(JNIEnv *, jclass, jlong, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pequal(JNIEnv *, jclass, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Piterate * Signature: (J[ILjava/lang/Object;Ljava/lang/Object;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Piterate - (JNIEnv*, jclass, jlong, jintArray, jobject, jobject); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Piterate(JNIEnv *, jclass, jlong, jintArray, jobject, jobject); /* * Class: hdf_hdf5lib_H5 * Method: H5Pcopy_prop * Signature: (JJLjava/lang/String;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pcopy_1prop -(JNIEnv *, jclass, jlong, jlong, jstring); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pcopy_1prop(JNIEnv *, jclass, jlong, jlong, jstring); /* * Class: hdf_hdf5lib_H5 * Method: H5Premove * Signature: (JLjava/lang/String;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Premove -(JNIEnv *, jclass, jlong, jstring); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Premove(JNIEnv *, jclass, jlong, jstring); /* * Class: hdf_hdf5lib_H5 * Method: H5Punregister * Signature: (JLjava/lang/String;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Punregister -(JNIEnv *, jclass, jlong, jstring); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Punregister(JNIEnv *, jclass, jlong, jstring); /* * Class: hdf_hdf5lib_H5 * Method: _H5Pclose_class * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5__1H5Pclose_1class -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5__1H5Pclose_1class(JNIEnv *, jclass, jlong); #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5P */ +#endif /* Included_hdf_hdf5lib_H5_H5P */ diff --git a/java/src/jni/h5pLAPLImp.c b/java/src/jni/h5pLAPLImp.c index f2cb80a..1db495c 100644 --- a/java/src/jni/h5pLAPLImp.c +++ b/java/src/jni/h5pLAPLImp.c @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -37,8 +36,7 @@ extern "C" { * Signature: (JJ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1nlinks - (JNIEnv *env, jclass clss, jlong lapl_id, jlong nlinks) +Java_hdf_hdf5lib_H5_H5Pset_1nlinks(JNIEnv *env, jclass clss, jlong lapl_id, jlong nlinks) { herr_t retVal = FAIL; @@ -60,8 +58,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1nlinks - (JNIEnv *env, jclass clss, jlong lapl_id) +Java_hdf_hdf5lib_H5_H5Pget_1nlinks(JNIEnv *env, jclass clss, jlong lapl_id) { size_t nlinks = 0; @@ -71,7 +68,7 @@ Java_hdf_hdf5lib_H5_H5Pget_1nlinks H5_LIBRARY_ERROR(ENVONLY); done: - return (jlong) nlinks; + return (jlong)nlinks; } /* end Java_hdf_hdf5lib_H5_H5Pget_1nlinks */ /* @@ -88,11 +85,10 @@ done: * Signature: (JLjava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1elink_1prefix - (JNIEnv *env, jclass clss, jlong lapl_id, jstring prefix) +Java_hdf_hdf5lib_H5_H5Pset_1elink_1prefix(JNIEnv *env, jclass clss, jlong lapl_id, jstring prefix) { const char *linkPrefix = NULL; - herr_t retVal = FAIL; + herr_t retVal = FAIL; UNUSED(clss); @@ -117,13 +113,12 @@ done: * Signature: (J[Ljava/lang/String;)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1elink_1prefix - (JNIEnv *env, jclass clss, jlong lapl_id, jobjectArray prefix) +Java_hdf_hdf5lib_H5_H5Pget_1elink_1prefix(JNIEnv *env, jclass clss, jlong lapl_id, jobjectArray prefix) { - ssize_t prefix_size = -1; - size_t size = 0; - char *pre = NULL; - jstring str = NULL; + ssize_t prefix_size = -1; + size_t size = 0; + char * pre = NULL; + jstring str = NULL; UNUSED(clss); @@ -133,16 +128,17 @@ Java_hdf_hdf5lib_H5_H5Pget_1elink_1prefix if ((prefix_size = H5Pget_elink_prefix((hid_t)lapl_id, (char *)NULL, size)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (NULL == (pre = (char *) HDmalloc(sizeof(char) * (size_t) prefix_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_elink_prefix: memory allocation failed"); + if (NULL == (pre = (char *)HDmalloc(sizeof(char) * (size_t)prefix_size + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Pget_elink_prefix: memory allocation failed"); - if (H5Pget_elink_prefix((hid_t)lapl_id, (char *)pre, (size_t) prefix_size + 1) < 0) + if (H5Pget_elink_prefix((hid_t)lapl_id, (char *)pre, (size_t)prefix_size + 1) < 0) H5_LIBRARY_ERROR(ENVONLY); pre[prefix_size] = '\0'; if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, pre))) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); - H5_JNI_FATAL_ERROR(ENVONLY, "H5Pget_elink_prefix: out of memory - unable to construct string from UTF characters"); + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, "H5Pget_elink_prefix: out of memory - unable to construct string from UTF characters"); } ENVPTR->SetObjectArrayElement(ENVONLY, prefix, 0, str); @@ -161,8 +157,7 @@ done: * Signature: (JJ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1elink_1fapl - (JNIEnv *env, jclass clss, jlong lapl_id, jlong fapl_id) +Java_hdf_hdf5lib_H5_H5Pset_1elink_1fapl(JNIEnv *env, jclass clss, jlong lapl_id, jlong fapl_id) { herr_t retVal = FAIL; @@ -181,8 +176,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Pget_1elink_1fapl - (JNIEnv *env, jclass clss, jlong lapl_id) +Java_hdf_hdf5lib_H5__1H5Pget_1elink_1fapl(JNIEnv *env, jclass clss, jlong lapl_id) { hid_t retVal = H5I_INVALID_HID; @@ -201,8 +195,7 @@ done: * Signature: (JI)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1elink_1acc_1flags - (JNIEnv *env, jclass clss, jlong lapl_id, jint flags) +Java_hdf_hdf5lib_H5_H5Pset_1elink_1acc_1flags(JNIEnv *env, jclass clss, jlong lapl_id, jint flags) { herr_t retVal = FAIL; @@ -212,7 +205,7 @@ Java_hdf_hdf5lib_H5_H5Pset_1elink_1acc_1flags H5_LIBRARY_ERROR(ENVONLY); done: - return (jint) retVal; + return (jint)retVal; } /* end Java_hdf_hdf5lib_H5_H5Pset_1elink_1acc_1flags */ /* @@ -221,8 +214,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1elink_1acc_1flags - (JNIEnv *env, jclass clss, jlong lapl_id) +Java_hdf_hdf5lib_H5_H5Pget_1elink_1acc_1flags(JNIEnv *env, jclass clss, jlong lapl_id) { unsigned flags; diff --git a/java/src/jni/h5pLAPLImp.h b/java/src/jni/h5pLAPLImp.h index 8efcfb5..8ddc8d2 100644 --- a/java/src/jni/h5pLAPLImp.h +++ b/java/src/jni/h5pLAPLImp.h @@ -1,18 +1,17 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#ifndef _Included_hdf_hdf5lib_H5_H5PLAPL -#define _Included_hdf_hdf5lib_H5_H5PLAPL +#ifndef Included_hdf_hdf5lib_H5_H5PLAPL +#define Included_hdf_hdf5lib_H5_H5PLAPL #include <jni.h> @@ -25,18 +24,14 @@ extern "C" { * Method: H5Pset_nlinks * Signature: (JJ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1nlinks -(JNIEnv *, jclass, jlong, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1nlinks(JNIEnv *, jclass, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_nlinks * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1nlinks -(JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Pget_1nlinks(JNIEnv *, jclass, jlong); /* * TODO: H5Pset_elink_cb @@ -51,57 +46,45 @@ Java_hdf_hdf5lib_H5_H5Pget_1nlinks * Method: H5Pset_elink_prefix * Signature: (JLjava/lang/String;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1elink_1prefix -(JNIEnv *, jclass, jlong, jstring); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1elink_1prefix(JNIEnv *, jclass, jlong, jstring); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_elink_prefix * Signature: (J[Ljava/lang/String;)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1elink_1prefix -(JNIEnv *, jclass, jlong, jobjectArray); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Pget_1elink_1prefix(JNIEnv *, jclass, jlong, jobjectArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_elink_fapl * Signature: (JJ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1elink_1fapl -(JNIEnv *, jclass, jlong, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1elink_1fapl(JNIEnv *, jclass, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: _H5Pget_elink_fapl * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Pget_1elink_1fapl -(JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Pget_1elink_1fapl(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_elink_acc_flags * Signature: (JI)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1elink_1acc_1flags -(JNIEnv *, jclass, jlong, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1elink_1acc_1flags(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_elink_acc_flags * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1elink_1acc_1flags -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1elink_1acc_1flags(JNIEnv *, jclass, jlong); #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5PLAPL */ +#endif /* Included_hdf_hdf5lib_H5_H5PLAPL */ diff --git a/java/src/jni/h5pLCPLImp.c b/java/src/jni/h5pLCPLImp.c index 7c79796..b5eebd1 100644 --- a/java/src/jni/h5pLCPLImp.c +++ b/java/src/jni/h5pLCPLImp.c @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ diff --git a/java/src/jni/h5pLCPLImp.h b/java/src/jni/h5pLCPLImp.h index 009d1b4..4cdf6cd 100644 --- a/java/src/jni/h5pLCPLImp.h +++ b/java/src/jni/h5pLCPLImp.h @@ -1,18 +1,17 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#ifndef _Included_hdf_hdf5lib_H5_H5PLCPL -#define _Included_hdf_hdf5lib_H5_H5PLCPL +#ifndef Included_hdf_hdf5lib_H5_H5PLCPL +#define Included_hdf_hdf5lib_H5_H5PLCPL #include <jni.h> @@ -24,4 +23,4 @@ extern "C" { } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5PLCPL */ +#endif /* Included_hdf_hdf5lib_H5_H5PLCPL */ diff --git a/java/src/jni/h5pOCPLImp.c b/java/src/jni/h5pOCPLImp.c index 241842e..bdcba46 100644 --- a/java/src/jni/h5pOCPLImp.c +++ b/java/src/jni/h5pOCPLImp.c @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -37,8 +36,8 @@ extern "C" { * Signature: (JZ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1create_1intermediate_1group - (JNIEnv *env, jclass clss, jlong lcpl_id, jboolean crt_intermed_group) +Java_hdf_hdf5lib_H5_H5Pset_1create_1intermediate_1group(JNIEnv *env, jclass clss, jlong lcpl_id, + jboolean crt_intermed_group) { herr_t retVal = FAIL; @@ -57,8 +56,7 @@ done: * Signature: (J)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1create_1intermediate_1group - (JNIEnv *env, jclass clss, jlong lcpl_id) +Java_hdf_hdf5lib_H5_H5Pget_1create_1intermediate_1group(JNIEnv *env, jclass clss, jlong lcpl_id) { unsigned crt_intermed_group = 0; @@ -77,8 +75,7 @@ done: * Signature: (JZ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1obj_1track_1times - (JNIEnv *env, jclass clss, jlong objplid, jboolean track_times) +Java_hdf_hdf5lib_H5_H5Pset_1obj_1track_1times(JNIEnv *env, jclass clss, jlong objplid, jboolean track_times) { hbool_t track = FALSE; @@ -99,11 +96,10 @@ done: * Signature: (J)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1obj_1track_1times - (JNIEnv *env, jclass clss, jlong objplid) +Java_hdf_hdf5lib_H5_H5Pget_1obj_1track_1times(JNIEnv *env, jclass clss, jlong objplid) { hbool_t track_times = FALSE; - jboolean retVal = JNI_FALSE; + jboolean retVal = JNI_FALSE; UNUSED(clss); @@ -122,8 +118,8 @@ done: * Signature: (JII)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1attr_1phase_1change - (JNIEnv *env, jclass clss, jlong ocpl_id, jint max_compact, jint min_dense) +Java_hdf_hdf5lib_H5_H5Pset_1attr_1phase_1change(JNIEnv *env, jclass clss, jlong ocpl_id, jint max_compact, + jint min_dense) { herr_t retVal = FAIL; @@ -142,12 +138,11 @@ done: * Signature: (J[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1attr_1phase_1change - (JNIEnv *env, jclass clss, jlong ocpl_id, jintArray attributes) +Java_hdf_hdf5lib_H5_H5Pget_1attr_1phase_1change(JNIEnv *env, jclass clss, jlong ocpl_id, jintArray attributes) { - jboolean isCopy; - jint *theArray = NULL; - herr_t retVal = FAIL; + jboolean isCopy; + jint * theArray = NULL; + herr_t retVal = FAIL; UNUSED(clss); @@ -156,7 +151,8 @@ Java_hdf_hdf5lib_H5_H5Pget_1attr_1phase_1change PIN_INT_ARRAY(ENVONLY, attributes, theArray, &isCopy, "H5Pget_attr_phase_change: input not pinned"); - if ((retVal = H5Pget_attr_phase_change((hid_t)ocpl_id, (unsigned *)&(theArray[0]), (unsigned *)&(theArray[1]))) < 0) + if ((retVal = H5Pget_attr_phase_change((hid_t)ocpl_id, (unsigned *)&(theArray[0]), + (unsigned *)&(theArray[1]))) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -172,8 +168,8 @@ done: * Signature: (JI)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1attr_1creation_1order - (JNIEnv *env, jclass clss, jlong ocpl_id, jint crt_order_flags) +Java_hdf_hdf5lib_H5_H5Pset_1attr_1creation_1order(JNIEnv *env, jclass clss, jlong ocpl_id, + jint crt_order_flags) { herr_t retVal = FAIL; @@ -192,8 +188,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1attr_1creation_1order - (JNIEnv *env, jclass clss, jlong ocpl_id) +Java_hdf_hdf5lib_H5_H5Pget_1attr_1creation_1order(JNIEnv *env, jclass clss, jlong ocpl_id) { unsigned crt_order_flags = 0; diff --git a/java/src/jni/h5pOCPLImp.h b/java/src/jni/h5pOCPLImp.h index fe01f06..94d397b 100644 --- a/java/src/jni/h5pOCPLImp.h +++ b/java/src/jni/h5pOCPLImp.h @@ -1,18 +1,17 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#ifndef _Included_hdf_hdf5lib_H5_H5POCPL -#define _Included_hdf_hdf5lib_H5_H5POCPL +#ifndef Included_hdf_hdf5lib_H5_H5POCPL +#define Included_hdf_hdf5lib_H5_H5POCPL #include <jni.h> @@ -25,75 +24,60 @@ extern "C" { * Method: H5Pset_create_intermediate_group * Signature: (JZ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1create_1intermediate_1group -(JNIEnv *, jclass, jlong, jboolean); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1create_1intermediate_1group(JNIEnv *, jclass, jlong, + jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_create_intermediate_group * Signature: (J)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1create_1intermediate_1group -(JNIEnv *, jclass, jlong); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Pget_1create_1intermediate_1group(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_obj_track_times * Signature: (JZ)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1obj_1track_1times -(JNIEnv *, jclass, jlong, jboolean); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1obj_1track_1times(JNIEnv *, jclass, jlong, jboolean); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_obj_track_times * Signature: (J)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1obj_1track_1times -(JNIEnv *, jclass, jlong); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Pget_1obj_1track_1times(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_attr_phase_change * Signature: (JII)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1attr_1phase_1change -(JNIEnv *, jclass, jlong, jint, jint); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1attr_1phase_1change(JNIEnv *, jclass, jlong, jint, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_attr_phase_change * Signature: (J[I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1attr_1phase_1change -(JNIEnv *, jclass, jlong, jintArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1attr_1phase_1change(JNIEnv *, jclass, jlong, jintArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Pset_attr_creation_order * Signature: (JI)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1attr_1creation_1order -(JNIEnv *, jclass, jlong, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pset_1attr_1creation_1order(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_attr_creation_order * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1attr_1creation_1order -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1attr_1creation_1order(JNIEnv *, jclass, jlong); #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5POCPL */ +#endif /* Included_hdf_hdf5lib_H5_H5POCPL */ diff --git a/java/src/jni/h5pOCpyPLImp.c b/java/src/jni/h5pOCpyPLImp.c index 9481f91..b525b68 100644 --- a/java/src/jni/h5pOCpyPLImp.c +++ b/java/src/jni/h5pOCpyPLImp.c @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -37,8 +36,7 @@ extern "C" { * Signature: (JI)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1copy_1object - (JNIEnv *env, jclass clss, jlong ocp_plist_id, jint copy_options) +Java_hdf_hdf5lib_H5_H5Pset_1copy_1object(JNIEnv *env, jclass clss, jlong ocp_plist_id, jint copy_options) { herr_t retVal = FAIL; @@ -57,8 +55,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1copy_1object - (JNIEnv *env, jclass clss, jlong ocp_plist_id) +Java_hdf_hdf5lib_H5_H5Pget_1copy_1object(JNIEnv *env, jclass clss, jlong ocp_plist_id) { unsigned copy_options = 0; diff --git a/java/src/jni/h5pOCpyPLImp.h b/java/src/jni/h5pOCpyPLImp.h index f1dca58..50ee972 100644 --- a/java/src/jni/h5pOCpyPLImp.h +++ b/java/src/jni/h5pOCpyPLImp.h @@ -1,18 +1,17 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#ifndef _Included_hdf_hdf5lib_H5_H5POCpyPL -#define _Included_hdf_hdf5lib_H5_H5POCpyPL +#ifndef Included_hdf_hdf5lib_H5_H5POCpyPL +#define Included_hdf_hdf5lib_H5_H5POCpyPL #include <jni.h> @@ -25,18 +24,14 @@ extern "C" { * Method: H5Pset_copy_object * Signature: (JI)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1copy_1object -(JNIEnv *, jclass, jlong, jint); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1copy_1object(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_copy_object * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1copy_1object -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1copy_1object(JNIEnv *, jclass, jlong); /* * TODO: H5Padd_merge_committed_dtype_path @@ -58,4 +53,4 @@ Java_hdf_hdf5lib_H5_H5Pget_1copy_1object } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5POCpyPL */ +#endif /* Included_hdf_hdf5lib_H5_H5POCpyPL */ diff --git a/java/src/jni/h5pStrCPLImp.c b/java/src/jni/h5pStrCPLImp.c index e69847d..a056e3a 100644 --- a/java/src/jni/h5pStrCPLImp.c +++ b/java/src/jni/h5pStrCPLImp.c @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -37,8 +36,7 @@ extern "C" { * Signature: (JI)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1char_1encoding - (JNIEnv *env, jclass clss, jlong acpl, jint encoding) +Java_hdf_hdf5lib_H5_H5Pset_1char_1encoding(JNIEnv *env, jclass clss, jlong acpl, jint encoding) { UNUSED(clss); @@ -55,8 +53,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1char_1encoding - (JNIEnv *env, jclass clss, jlong acpl) +Java_hdf_hdf5lib_H5_H5Pget_1char_1encoding(JNIEnv *env, jclass clss, jlong acpl) { H5T_cset_t encoding = H5T_CSET_ERROR; diff --git a/java/src/jni/h5pStrCPLImp.h b/java/src/jni/h5pStrCPLImp.h index 6e140d3..c0a7ec2 100644 --- a/java/src/jni/h5pStrCPLImp.h +++ b/java/src/jni/h5pStrCPLImp.h @@ -1,18 +1,17 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ -#ifndef _Included_hdf_hdf5lib_H5_H5PStrCPL -#define _Included_hdf_hdf5lib_H5_H5PStrCPL +#ifndef Included_hdf_hdf5lib_H5_H5PStrCPL +#define Included_hdf_hdf5lib_H5_H5PStrCPL #include <jni.h> @@ -25,21 +24,17 @@ extern "C" { * Method: H5Pset_char_encoding * Signature: (JI)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Pset_1char_1encoding -(JNIEnv *, jclass, jlong, jint); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Pset_1char_1encoding(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Pget_char_encoding * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Pget_1char_1encoding -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Pget_1char_1encoding(JNIEnv *, jclass, jlong); #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5PStrCPL */ +#endif /* Included_hdf_hdf5lib_H5_H5PStrCPL */ diff --git a/java/src/jni/h5plImp.c b/java/src/jni/h5plImp.c index 90d78fe..9193028 100644 --- a/java/src/jni/h5plImp.c +++ b/java/src/jni/h5plImp.c @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -37,8 +36,7 @@ extern "C" { * Signature: (I)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5PLset_1loading_1state - (JNIEnv *env, jclass clss, jint plugin_flags) +Java_hdf_hdf5lib_H5_H5PLset_1loading_1state(JNIEnv *env, jclass clss, jint plugin_flags) { UNUSED(clss); @@ -55,8 +53,7 @@ done: * Signature: (V)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5PLget_1loading_1state - (JNIEnv *env, jclass clss) +Java_hdf_hdf5lib_H5_H5PLget_1loading_1state(JNIEnv *env, jclass clss) { unsigned int plugin_type = 0; @@ -75,11 +72,10 @@ done: * Signature: (Ljava/lang/String;)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5PLappend - (JNIEnv *env, jclass clss, jobjectArray plugin_path) +Java_hdf_hdf5lib_H5_H5PLappend(JNIEnv *env, jclass clss, jobjectArray plugin_path) { const char *newPath = NULL; - herr_t retVal = FAIL; + herr_t retVal = FAIL; UNUSED(clss); @@ -101,11 +97,10 @@ done: * Signature: (Ljava/lang/String;)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5PLprepend - (JNIEnv *env, jclass clss, jobjectArray plugin_path) +Java_hdf_hdf5lib_H5_H5PLprepend(JNIEnv *env, jclass clss, jobjectArray plugin_path) { const char *newPath = NULL; - herr_t retVal = FAIL; + herr_t retVal = FAIL; UNUSED(clss); @@ -128,23 +123,22 @@ done: * Signature: (Ljava/lang/String;I)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5PLreplace - (JNIEnv *env, jclass clss, jobjectArray plugin_path, jint index) +Java_hdf_hdf5lib_H5_H5PLreplace(JNIEnv *env, jclass clss, jobjectArray plugin_path, jint idx) { const char *newPath = NULL; - herr_t retVal = FAIL; + herr_t retVal = FAIL; UNUSED(clss); if (NULL == plugin_path) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5PLreplace: new path is NULL"); - if (index < 0) + if (idx < 0) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5PLreplace: index < 0"); PIN_JAVA_STRING(ENVONLY, plugin_path, newPath, NULL, "H5PLreplace: new path not pinned"); - if ((retVal = H5PLreplace(newPath, (unsigned) index)) < 0) + if ((retVal = H5PLreplace(newPath, (unsigned)idx)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -158,23 +152,22 @@ done: * Signature: (Ljava/lang/String;I)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5PLinsert - (JNIEnv *env, jclass clss, jobjectArray plugin_path, jint index) +Java_hdf_hdf5lib_H5_H5PLinsert(JNIEnv *env, jclass clss, jobjectArray plugin_path, jint idx) { const char *newPath = NULL; - herr_t retVal = FAIL; + herr_t retVal = FAIL; UNUSED(clss); if (NULL == plugin_path) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5PLinsert: new path is NULL"); - if (index < 0) + if (idx < 0) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5PLinsert: index < 0"); PIN_JAVA_STRING(ENVONLY, plugin_path, newPath, NULL, "H5PLinsert: new path not pinned"); - if ((retVal = H5PLinsert(newPath, (unsigned) index)) < 0) + if ((retVal = H5PLinsert(newPath, (unsigned)idx)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -188,15 +181,14 @@ done: * Signature: (I)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5PLremove - (JNIEnv *env, jclass clss, jint index) +Java_hdf_hdf5lib_H5_H5PLremove(JNIEnv *env, jclass clss, jint idx) { UNUSED(clss); - if (index < 0) + if (idx < 0) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5PLremove: index < 0"); - if (H5PLremove((unsigned) index) < 0) + if (H5PLremove((unsigned)idx) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -209,26 +201,25 @@ done: * Signature: (I)Ljava/lang/String; */ JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5PLget - (JNIEnv *env, jclass clss, jint index) +Java_hdf_hdf5lib_H5_H5PLget(JNIEnv *env, jclass clss, jint idx) { - jstring str = NULL; - ssize_t buf_size; - char *aName = NULL; + jstring str = NULL; + ssize_t buf_size; + char * aName = NULL; UNUSED(clss); - if (index < 0) + if (idx < 0) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5PLget: index < 0"); /* Get the length of the name */ - if ((buf_size = H5PLget((unsigned) index, NULL, 0)) < 0) + if ((buf_size = H5PLget((unsigned)idx, NULL, 0)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5PLget: failed to allocate plugin name buffer"); + if (NULL == (aName = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5PLget: failed to allocate plugin name buffer"); - if ((H5PLget((unsigned) index, aName, (size_t)buf_size + 1)) < 0) + if ((H5PLget((unsigned)idx, aName, (size_t)buf_size + 1)) < 0) H5_LIBRARY_ERROR(ENVONLY); aName[buf_size] = '\0'; @@ -248,8 +239,7 @@ done: * Signature: (V)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5PLsize - (JNIEnv *env, jclass clss) +Java_hdf_hdf5lib_H5_H5PLsize(JNIEnv *env, jclass clss) { unsigned int listsize = 0; diff --git a/java/src/jni/h5plImp.h b/java/src/jni/h5plImp.h index 5336621..410a34f 100644 --- a/java/src/jni/h5plImp.h +++ b/java/src/jni/h5plImp.h @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -14,8 +13,8 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5PL */ -#ifndef _Included_hdf_hdf5lib_H5_H5PL -#define _Included_hdf_hdf5lib_H5_H5PL +#ifndef Included_hdf_hdf5lib_H5_H5PL +#define Included_hdf_hdf5lib_H5_H5PL #ifdef __cplusplus extern "C" { @@ -26,84 +25,66 @@ extern "C" { * Method: H5PLset_loading_state * Signature: (I)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5PLset_1loading_1state - (JNIEnv *, jclass, jint); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5PLset_1loading_1state(JNIEnv *, jclass, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5PLget_loading_state * Signature: (V)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5PLget_1loading_1state - (JNIEnv *, jclass); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5PLget_1loading_1state(JNIEnv *, jclass); /* * Class: hdf_hdf5lib_H5 * Method: H5PLappend * Signature: (Ljava/lang/String;)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5PLappend - (JNIEnv *, jclass, jobjectArray); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5PLappend(JNIEnv *, jclass, jobjectArray); /* * Class: hdf_hdf5lib_H5 * Method: H5PLprepend * Signature: (Ljava/lang/String;)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5PLprepend - (JNIEnv *, jclass, jobjectArray); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5PLprepend(JNIEnv *, jclass, jobjectArray); /* * Class: hdf_hdf5lib_H5 * Method: H5PLreplace * Signature: (Ljava/lang/String;I)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5PLreplace - (JNIEnv *, jclass, jobjectArray, jint); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5PLreplace(JNIEnv *, jclass, jobjectArray, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5PLinsert * Signature: (Ljava/lang/String;I)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5PLinsert - (JNIEnv *, jclass, jobjectArray, jint); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5PLinsert(JNIEnv *, jclass, jobjectArray, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5PLremove * Signature: (I)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5PLremove - (JNIEnv *, jclass, jint); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5PLremove(JNIEnv *, jclass, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5PLget * Signature: (I)Ljava/lang/String; */ -JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5PLget - (JNIEnv *, jclass, jint); +JNIEXPORT jstring JNICALL Java_hdf_hdf5lib_H5_H5PLget(JNIEnv *, jclass, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5PLsize * Signature: (V)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5PLsize - (JNIEnv *, jclass); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5PLsize(JNIEnv *, jclass); #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5PL */ +#endif /* Included_hdf_hdf5lib_H5_H5PL */ diff --git a/java/src/jni/h5rImp.c b/java/src/jni/h5rImp.c index 1a77fd3..9fe0701 100644 --- a/java/src/jni/h5rImp.c +++ b/java/src/jni/h5rImp.c @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -26,10 +26,585 @@ extern "C" { #include "h5jni.h" #include "h5rImp.h" +/* H5R: HDF5 1.12 Reference API Functions */ + /* - * Pointer to the JNI's Virtual Machine; used for callback functions. + * Class: hdf_hdf5lib_H5 + * Method: H5Rcreate_object + * Signature: (JLjava/lang/String;)[B */ -/* extern JavaVM *jvm; */ +JNIEXPORT jbyteArray JNICALL +Java_hdf_hdf5lib_H5_H5Rcreate_1object(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong aid) +{ + const char *refName = NULL; + jbyteArray ref = NULL; + jbyte * refBuf = NULL; + herr_t status = FAIL; + + UNUSED(clss); + + if (NULL == name) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rcreate_object: name is NULL"); + + PIN_JAVA_STRING(ENVONLY, name, refName, NULL, "H5Rcreate_object: reference name not pinned"); + + if (NULL == (refBuf = HDcalloc(1, H5R_REF_BUF_SIZE))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rcreate_object: failed to allocate reference buffer"); + + if ((status = H5Rcreate_object((hid_t)loc_id, refName, (hid_t)aid, (const H5R_ref_t *)refBuf)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + if (NULL == (ref = ENVPTR->NewByteArray(ENVONLY, (jsize)H5R_REF_BUF_SIZE))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + ENVPTR->SetByteArrayRegion(ENVONLY, ref, 0, (jsize)H5R_REF_BUF_SIZE, (jbyte *)refBuf); + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + +done: + if (refName) + UNPIN_JAVA_STRING(ENVONLY, name, refName); + if (refBuf) + HDfree(refBuf); + + return ref; +} /* end Java_hdf_hdf5lib_H5_H5Rcreate_1object */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Rcreate_region + * Signature: (JLjava/lang/String;J)[B + */ +JNIEXPORT jbyteArray JNICALL +Java_hdf_hdf5lib_H5_H5Rcreate_1region(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong space_id, + jlong aid) +{ + const char *refName = NULL; + jbyteArray ref = NULL; + jbyte * refBuf = NULL; + herr_t status = FAIL; + + UNUSED(clss); + + if (NULL == name) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rcreate_region: name is NULL"); + + PIN_JAVA_STRING(ENVONLY, name, refName, NULL, "H5Rcreate_region: reference name not pinned"); + + if (NULL == (refBuf = HDcalloc(1, H5R_REF_BUF_SIZE))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rcreate_region: failed to allocate reference buffer"); + + if ((status = H5Rcreate_region((hid_t)loc_id, refName, space_id, (hid_t)aid, (const H5R_ref_t *)refBuf)) < + 0) + H5_LIBRARY_ERROR(ENVONLY); + + if (NULL == (ref = ENVPTR->NewByteArray(ENVONLY, (jsize)H5R_REF_BUF_SIZE))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + ENVPTR->SetByteArrayRegion(ENVONLY, ref, 0, (jsize)H5R_REF_BUF_SIZE, (jbyte *)refBuf); + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + +done: + if (refName) + UNPIN_JAVA_STRING(ENVONLY, name, refName); + if (refBuf) + HDfree(refBuf); + + return ref; +} /* end Java_hdf_hdf5lib_H5_H5Rcreate_1region */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Rcreate_attr + * Signature: (JLjava/lang/String;Ljava/lang/String;)[B + */ +JNIEXPORT jbyteArray JNICALL +Java_hdf_hdf5lib_H5_H5Rcreate_1attr(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jstring attr_name, + jlong aid) +{ + const char *refName = NULL; + const char *attrName = NULL; + jbyteArray ref = NULL; + jbyte * refBuf = NULL; + herr_t status = FAIL; + + UNUSED(clss); + + if (NULL == name) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rcreate_attr: name is NULL"); + if (NULL == attr_name) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rcreate_attr: attribute name is NULL"); + + PIN_JAVA_STRING(ENVONLY, attr_name, attrName, NULL, "H5Rcreate_attr: attribute name not pinned"); + + PIN_JAVA_STRING(ENVONLY, name, refName, NULL, "H5Rcreate_attr: reference name not pinned"); + + if (NULL == (refBuf = HDcalloc(1, H5R_REF_BUF_SIZE))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rcreate_attr: failed to allocate reference buffer"); + + if ((status = H5Rcreate_attr((hid_t)loc_id, refName, attrName, (hid_t)aid, (const H5R_ref_t *)refBuf)) < + 0) + H5_LIBRARY_ERROR(ENVONLY); + + if (NULL == (ref = ENVPTR->NewByteArray(ENVONLY, (jsize)H5R_REF_BUF_SIZE))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + ENVPTR->SetByteArrayRegion(ENVONLY, ref, 0, (jsize)H5R_REF_BUF_SIZE, (jbyte *)refBuf); + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + +done: + if (attrName) + UNPIN_JAVA_STRING(ENVONLY, attr_name, attrName); + if (refName) + UNPIN_JAVA_STRING(ENVONLY, name, refName); + if (refBuf) + HDfree(refBuf); + + return ref; +} /* end Java_hdf_hdf5lib_H5_H5Rcreate_1attr */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Rdestroy + * Signature: ([B)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Rdestroy(JNIEnv *env, jclass clss, jbyteArray ref) +{ + jboolean isCopy; + jbyte * refBuf = NULL; + jsize refBufLen; + herr_t status = FAIL; + + UNUSED(clss); + + if (NULL == ref) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rdestroy: reference is NULL"); + + if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref)) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rdestroy: reference array length < 0"); + } + + PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rdestroy: reference buffer not pinned"); + + if ((status = H5Rdestroy((const H5R_ref_t *)refBuf)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + +done: + if (refBuf) + UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (status < 0) ? JNI_ABORT : 0); +} /* end Java_hdf_hdf5lib_H5_H5Rdestroy */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Rget_type + * Signature: ([B)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Rget_1type(JNIEnv *env, jclass clss, jbyteArray ref) +{ + jboolean isCopy; + jbyte * refBuf = NULL; + jsize refBufLen; + H5R_type_t ref_type = -1; + + UNUSED(clss); + + if (NULL == ref) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_type: reference is NULL"); + + if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref)) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_type: reference array length < 0"); + } + + PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_type: reference buffer not pinned"); + + if ((ref_type = H5Rget_type((const H5R_ref_t *)refBuf)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + +done: + if (refBuf) + UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (ref_type < 0) ? JNI_ABORT : 0); + + return (jint)ref_type; +} /* end Java_hdf_hdf5lib_H5_H5Rget_1type */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Requal + * Signature: ([B[B)Z + */ +JNIEXPORT jboolean JNICALL +Java_hdf_hdf5lib_H5_H5Requal(JNIEnv *env, jclass clss, jbyteArray ref1, jbyteArray ref2) +{ + jboolean isCopy; + jbyte * refBuf1 = NULL; + jbyte * refBuf2 = NULL; + jsize refBufLen; + htri_t bval = JNI_FALSE; + herr_t status = FAIL; + + UNUSED(clss); + + if (NULL == ref1) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Requal: reference1 is NULL"); + + if (NULL == ref2) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Requal: reference2 is NULL"); + + if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref1)) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Requal: reference1 array length < 0"); + } + + PIN_BYTE_ARRAY(ENVONLY, ref1, refBuf1, &isCopy, "H5Requal: reference1 buffer not pinned"); + + if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref2)) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Requal: reference2 array length < 0"); + } + + PIN_BYTE_ARRAY(ENVONLY, ref2, refBuf2, &isCopy, "H5Requal: reference2 buffer not pinned"); + + if ((bval = H5Requal((const H5R_ref_t *)refBuf1, (const H5R_ref_t *)refBuf2)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + status = bval; + + bval = (bval > 0) ? JNI_TRUE : JNI_FALSE; + +done: + if (refBuf2) + UNPIN_BYTE_ARRAY(ENVONLY, ref2, refBuf2, (status < 0) ? JNI_ABORT : 0); + if (refBuf1) + UNPIN_BYTE_ARRAY(ENVONLY, ref1, refBuf1, (status < 0) ? JNI_ABORT : 0); + + return (jboolean)bval; +} /* end Java_hdf_hdf5lib_H5_H5Requal */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Rcopy + * Signature: ([B)[B + */ +JNIEXPORT jbyteArray JNICALL +Java_hdf_hdf5lib_H5_H5Rcopy(JNIEnv *env, jclass clss, jbyteArray src_ref) +{ + jboolean isCopy; + jbyte * src_refBuf = NULL; + jsize refBufLen; + jbyteArray dst_ref = NULL; + jbyte * dst_refBuf = NULL; + herr_t status = FAIL; + + UNUSED(clss); + + if (NULL == src_ref) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rcopy: src reference is NULL"); + + if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, src_ref)) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rcopy: src reference array length < 0"); + } + + PIN_BYTE_ARRAY(ENVONLY, src_ref, src_refBuf, &isCopy, "H5Rcopy: src reference buffer not pinned"); + + if (NULL == (dst_refBuf = HDcalloc(1, H5R_REF_BUF_SIZE))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rcreate_attr: failed to allocate dst reference buffer"); + + if ((status = H5Rcopy((const H5R_ref_t *)src_refBuf, (const H5R_ref_t *)dst_refBuf)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + if (NULL == (dst_ref = ENVPTR->NewByteArray(ENVONLY, (jsize)H5R_REF_BUF_SIZE))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + ENVPTR->SetByteArrayRegion(ENVONLY, dst_ref, 0, (jsize)H5R_REF_BUF_SIZE, (jbyte *)dst_refBuf); + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + +done: + if (src_refBuf) + UNPIN_BYTE_ARRAY(ENVONLY, src_ref, src_refBuf, (status < 0) ? JNI_ABORT : 0); + if (dst_refBuf) + HDfree(dst_refBuf); + + return dst_ref; +} /* end Java_hdf_hdf5lib_H5_H5Rcopy */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Ropen_object + * Signature: ([BJJ)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5__1H5Ropen_1object(JNIEnv *env, jclass clss, jbyteArray ref, jlong rapl_id, jlong oapl_id) +{ + jboolean isCopy; + jbyte * refBuf = NULL; + jsize refBufLen; + hid_t retVal = H5I_INVALID_HID; + + UNUSED(clss); + + if (NULL == ref) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ropen_object: reference is NULL"); + + if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref)) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Ropen_object: reference array length < 0"); + } + + PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Ropen_object: reference buffer not pinned"); + + if ((retVal = H5Ropen_object((const H5R_ref_t *)refBuf, (hid_t)rapl_id, (hid_t)oapl_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + +done: + if (refBuf) + UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (retVal < 0) ? JNI_ABORT : 0); + + return (jlong)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Ropen_1object */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Ropen_region + * Signature: ([BJJ)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5__1H5Ropen_1region(JNIEnv *env, jclass clss, jbyteArray ref, jlong rapl_id, jlong oapl_id) +{ + jboolean isCopy; + jbyte * refBuf = NULL; + jsize refBufLen; + hid_t retVal = H5I_INVALID_HID; + + UNUSED(clss); + + if (NULL == ref) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ropen_region: reference is NULL"); + + if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref)) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Ropen_region: reference array length < 0"); + } + + PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Ropen_region: reference buffer not pinned"); + + if ((retVal = H5Ropen_region((const H5R_ref_t *)refBuf, (hid_t)rapl_id, (hid_t)oapl_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + +done: + if (refBuf) + UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (retVal < 0) ? JNI_ABORT : 0); + + return (jlong)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Ropen_1region */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Ropen_attr + * Signature: ([BJJ)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5__1H5Ropen_1attr(JNIEnv *env, jclass clss, jbyteArray ref, jlong rapl_id, jlong aapl_id) +{ + jboolean isCopy; + jbyte * refBuf = NULL; + jsize refBufLen; + hid_t retVal = H5I_INVALID_HID; + + UNUSED(clss); + + if (NULL == ref) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Ropen_attr: reference is NULL"); + + if ((refBufLen = ENVPTR->GetArrayLength(ENVONLY, ref)) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Ropen_attr: reference array length < 0"); + } + + PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Ropen_attr: reference buffer not pinned"); + + if ((retVal = H5Ropen_attr((const H5R_ref_t *)refBuf, (hid_t)rapl_id, (hid_t)aapl_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + +done: + if (refBuf) + UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (retVal < 0) ? JNI_ABORT : 0); + + return (jlong)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Ropen_1attr */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Rget_obj_type3 + * Signature: ([BJ)I + */ +JNIEXPORT jint JNICALL +Java_hdf_hdf5lib_H5_H5Rget_1obj_1type3(JNIEnv *env, jclass clss, jbyteArray ref, jlong rapl_id) +{ + H5O_type_t object_info = -1; + jboolean isCopy; + jbyte * refBuf = NULL; + int retVal = -1; + + UNUSED(clss); + + if (NULL == ref) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_obj_type3: reference buffer is NULL"); + + PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_obj_type3: reference buffer not pinned"); + + if ((retVal = H5Rget_obj_type3((const H5R_ref_t *)refBuf, (hid_t)rapl_id, &object_info)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + if (retVal >= 0) + retVal = object_info; + +done: + if (refBuf) + UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (retVal < 0) ? JNI_ABORT : 0); + + return (jint)retVal; +} /* end Java_hdf_hdf5lib_H5_H5Rget_1obj_1type3 */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Rget_file_name + * Signature: ([B)Ljava/lang/String; + */ +JNIEXPORT jstring JNICALL +Java_hdf_hdf5lib_H5_H5Rget_1file_1name(JNIEnv *env, jclass clss, jbyteArray ref) +{ + jboolean isCopy; + jbyte * refBuf = NULL; + jstring str = NULL; + ssize_t buf_size; + ssize_t check_size = -1; + char * namePtr = NULL; + + UNUSED(clss); + + if (NULL == ref) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_file_name: reference buffer is NULL"); + + PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_file_name: reference buffer not pinned"); + + /* Get the length of the name */ + if ((buf_size = H5Rget_file_name((const H5R_ref_t *)refBuf, NULL, 0)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + if (NULL == (namePtr = HDmalloc(sizeof(char) * (size_t)buf_size + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rget_file_name: malloc failed"); + + if ((check_size = H5Rget_file_name((const H5R_ref_t *)refBuf, namePtr, (size_t)buf_size + 1)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + namePtr[buf_size] = '\0'; + + if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, namePtr))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + +done: + if (namePtr) + HDfree(namePtr); + if (refBuf) + UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (check_size < 0) ? JNI_ABORT : 0); + + return str; +} /* end Java_hdf_hdf5lib_H5_H5Rget_1file_1name */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Rget_obj_name + * Signature: ([BJ)Ljava/lang/String; + */ +JNIEXPORT jstring JNICALL +Java_hdf_hdf5lib_H5_H5Rget_1obj_1name(JNIEnv *env, jclass clss, jbyteArray ref, jlong rapl_id) +{ + jboolean isCopy; + jbyte * refBuf = NULL; + jstring str = NULL; + ssize_t buf_size; + ssize_t check_size = -1; + char * namePtr = NULL; + + UNUSED(clss); + + if (NULL == ref) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_obj_name: reference buffer is NULL"); + + PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_obj_name: reference buffer not pinned"); + + /* Get the length of the name */ + if ((buf_size = H5Rget_obj_name((const H5R_ref_t *)refBuf, (hid_t)rapl_id, NULL, 0)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + if (NULL == (namePtr = HDmalloc(sizeof(char) * (size_t)buf_size + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rget_obj_name: malloc failed"); + + if ((check_size = + H5Rget_obj_name((const H5R_ref_t *)refBuf, (hid_t)rapl_id, namePtr, (size_t)buf_size + 1)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + namePtr[buf_size] = '\0'; + + if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, namePtr))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + +done: + if (namePtr) + HDfree(namePtr); + if (refBuf) + UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (check_size < 0) ? JNI_ABORT : 0); + + return str; +} /* end Java_hdf_hdf5lib_H5_H5Rget_1obj_1name */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Rget_attr_name + * Signature: ([B)Ljava/lang/String; + */ +JNIEXPORT jstring JNICALL +Java_hdf_hdf5lib_H5_H5Rget_1attr_1name(JNIEnv *env, jclass clss, jbyteArray ref) +{ + jboolean isCopy; + jbyte * refBuf = NULL; + jstring str = NULL; + ssize_t buf_size; + ssize_t check_size = -1; + char * namePtr = NULL; + + UNUSED(clss); + + if (NULL == ref) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Rget_attr_name: reference buffer is NULL"); + + PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_attr_name: reference buffer not pinned"); + + /* Get the length of the name */ + if ((buf_size = H5Rget_attr_name((const H5R_ref_t *)refBuf, NULL, 0)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + if (NULL == (namePtr = HDmalloc(sizeof(char) * (size_t)buf_size + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rget_attr_name: malloc failed"); + + if ((check_size = H5Rget_attr_name((const H5R_ref_t *)refBuf, namePtr, (size_t)buf_size + 1)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + namePtr[buf_size] = '\0'; + + if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, namePtr))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + +done: + if (namePtr) + HDfree(namePtr); + if (refBuf) + UNPIN_BYTE_ARRAY(ENVONLY, ref, refBuf, (check_size < 0) ? JNI_ABORT : 0); + + return str; +} /* end Java_hdf_hdf5lib_H5_H5Rget_1attr_1name */ + +/* H5R: HDF5 1.8 Reference API Functions */ /* * Class: hdf_hdf5lib_H5 @@ -37,12 +612,12 @@ extern "C" { * Signature: ([BJLjava/lang/String;IJ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Rcreate - (JNIEnv *env, jclass clss, jbyteArray ref, jlong loc_id, jstring name, jint ref_type, jlong space_id) +Java_hdf_hdf5lib_H5_H5Rcreate(JNIEnv *env, jclass clss, jbyteArray ref, jlong loc_id, jstring name, + jint ref_type, jlong space_id) { const char *refName = NULL; jboolean isCopy; - jbyte *refBuf = NULL; + jbyte * refBuf = NULL; jsize refBufLen; herr_t status = FAIL; @@ -59,9 +634,10 @@ Java_hdf_hdf5lib_H5_H5Rcreate } if ((H5R_OBJECT == ref_type) && (refBufLen != H5R_OBJ_REF_BUF_SIZE)) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: reference input array length != H5R_OBJ_REF_BUF_SIZE") + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: reference input array length != H5R_OBJ_REF_BUF_SIZE"); else if ((H5R_DATASET_REGION == ref_type) && (refBufLen != H5R_DSET_REG_REF_BUF_SIZE)) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE") + H5_BAD_ARGUMENT_ERROR(ENVONLY, + "H5Rcreate: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE"); else if ((H5R_OBJECT != ref_type) && (H5R_DATASET_REGION != ref_type)) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rcreate: unknown reference type"); @@ -87,13 +663,13 @@ done: * Signature: (JJI[B)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Rdereference - (JNIEnv *env, jclass clss, jlong dataset, jlong access_list, jint ref_type, jbyteArray ref) +Java_hdf_hdf5lib_H5__1H5Rdereference(JNIEnv *env, jclass clss, jlong dataset, jlong access_list, + jint ref_type, jbyteArray ref) { - jboolean isCopy; - jbyte *refBuf = NULL; - jsize refBufLen; - hid_t retVal = H5I_INVALID_HID; + jboolean isCopy; + jbyte * refBuf = NULL; + jsize refBufLen; + hid_t retVal = H5I_INVALID_HID; UNUSED(clss); @@ -106,9 +682,11 @@ Java_hdf_hdf5lib_H5__1H5Rdereference } if ((H5R_OBJECT == ref_type) && (refBufLen != H5R_OBJ_REF_BUF_SIZE)) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rdereference: reference input array length != H5R_OBJ_REF_BUF_SIZE") + H5_BAD_ARGUMENT_ERROR(ENVONLY, + "H5Rdereference: reference input array length != H5R_OBJ_REF_BUF_SIZE"); else if ((H5R_DATASET_REGION == ref_type) && (refBufLen != H5R_DSET_REG_REF_BUF_SIZE)) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rdereference: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE") + H5_BAD_ARGUMENT_ERROR( + ENVONLY, "H5Rdereference: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE"); else if ((H5R_OBJECT != ref_type) && (H5R_DATASET_REGION != ref_type)) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rdereference: unknown reference type"); @@ -130,13 +708,12 @@ done: * Signature: (JI[B)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Rget_1region - (JNIEnv *env, jclass clss, jlong dataset, jint ref_type, jbyteArray ref) +Java_hdf_hdf5lib_H5__1H5Rget_1region(JNIEnv *env, jclass clss, jlong dataset, jint ref_type, jbyteArray ref) { - jboolean isCopy; - jbyte *refBuf = NULL; - jsize refBufLen; - hid_t retVal = H5I_INVALID_HID; + jboolean isCopy; + jbyte * refBuf = NULL; + jsize refBufLen; + hid_t retVal = H5I_INVALID_HID; UNUSED(clss); @@ -151,7 +728,8 @@ Java_hdf_hdf5lib_H5__1H5Rget_1region } if (refBufLen != H5R_DSET_REG_REF_BUF_SIZE) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_region: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE"); + H5_BAD_ARGUMENT_ERROR( + ENVONLY, "H5Rget_region: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE"); PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_region: reference buffer not pinned"); @@ -171,13 +749,12 @@ done: * Signature: (JI[B)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Rget_1obj_1type - (JNIEnv *env, jclass clss, jlong loc_id, jint ref_type, jbyteArray ref) +Java_hdf_hdf5lib_H5_H5Rget_1obj_1type(JNIEnv *env, jclass clss, jlong loc_id, jint ref_type, jbyteArray ref) { - H5O_type_t object_info; - jboolean isCopy; - jbyte *refBuf = NULL; - int retVal = -1; + H5O_type_t object_info; + jboolean isCopy; + jbyte * refBuf = NULL; + int retVal = -1; UNUSED(clss); @@ -205,14 +782,14 @@ done: * Signature: (JI[B[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Rget_1obj_1type2 - (JNIEnv *env, jclass clss, jlong loc_id, jint ref_type, jbyteArray ref, jintArray ref_obj) +Java_hdf_hdf5lib_H5_H5Rget_1obj_1type2(JNIEnv *env, jclass clss, jlong loc_id, jint ref_type, jbyteArray ref, + jintArray ref_obj) { - jboolean isCopy, isCopy2; - jbyte *refBuf = NULL; - jint *ref_objP = NULL; - jint status = -1; - int retVal = -1; + jboolean isCopy, isCopy2; + jbyte * refBuf = NULL; + jint * ref_objP = NULL; + jint status = -1; + int retVal = -1; UNUSED(clss); @@ -245,15 +822,15 @@ done: * Signature: (JI[B[Ljava/lang/String;J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Rget_1name - (JNIEnv *env, jclass clss, jlong loc_id, jint ref_type, jbyteArray ref, jobjectArray name, jlong size) +Java_hdf_hdf5lib_H5_H5Rget_1name(JNIEnv *env, jclass clss, jlong loc_id, jint ref_type, jbyteArray ref, + jobjectArray name, jlong size) { - jboolean isCopy; - jstring str; - jsize refBufLen; - jbyte *refBuf = NULL; - char *aName = NULL; - jlong ret_val = -1; + jboolean isCopy; + jstring str; + jsize refBufLen; + jbyte * refBuf = NULL; + char * aName = NULL; + jlong ret_val = -1; UNUSED(clss); @@ -268,25 +845,27 @@ Java_hdf_hdf5lib_H5_H5Rget_1name } if ((H5R_OBJECT == ref_type) && (refBufLen != H5R_OBJ_REF_BUF_SIZE)) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: reference input array length != H5R_OBJ_REF_BUF_SIZE") + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: reference input array length != H5R_OBJ_REF_BUF_SIZE"); else if ((H5R_DATASET_REGION == ref_type) && (refBufLen != H5R_DSET_REG_REF_BUF_SIZE)) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE") + H5_BAD_ARGUMENT_ERROR( + ENVONLY, "H5Rget_name: region reference input array length != H5R_DSET_REG_REF_BUF_SIZE"); else if ((H5R_OBJECT != ref_type) && (H5R_DATASET_REGION != ref_type)) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Rget_name: unknown reference type"); PIN_BYTE_ARRAY(ENVONLY, ref, refBuf, &isCopy, "H5Rget_name: reference buffer not pinned"); - if (NULL == (aName = (char *) HDmalloc(sizeof(char) * (size_t)size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Rget_name: failed to allocate referenced object name buffer"); + if (NULL == (aName = HDmalloc(sizeof(char) * (size_t)size + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Rget_name: failed to allocate referenced object name buffer"); - if ((ret_val = (jlong)H5Rget_name((hid_t)loc_id, (H5R_type_t)ref_type, refBuf, aName, (size_t)size + 1)) < 0) + if ((ret_val = (jlong)H5Rget_name((hid_t)loc_id, (H5R_type_t)ref_type, refBuf, aName, (size_t)size + 1)) < + 0) H5_LIBRARY_ERROR(ENVONLY); aName[(size_t)size] = '\0'; if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, aName))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - ENVPTR->SetObjectArrayElement(ENVONLY, name, (jsize) 0, str); + ENVPTR->SetObjectArrayElement(ENVONLY, name, (jsize)0, str); CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); done: @@ -298,7 +877,6 @@ done: return ret_val; } /* end Java_hdf_hdf5lib_H5_H5Rget_1name */ - #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ diff --git a/java/src/jni/h5rImp.h b/java/src/jni/h5rImp.h index e28329b..ffd7737 100644 --- a/java/src/jni/h5rImp.h +++ b/java/src/jni/h5rImp.h @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -14,69 +13,165 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5R */ -#ifndef _Included_hdf_hdf5lib_H5_H5R -#define _Included_hdf_hdf5lib_H5_H5R +#ifndef Included_hdf_hdf5lib_H5_H5R +#define Included_hdf_hdf5lib_H5_H5R #ifdef __cplusplus extern "C" { #endif /* __cplusplus */ +/* H5R: HDF5 1.12 Reference API Functions */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Rcreate_object + * Signature: (JLjava/lang/String;)[B + */ +JNIEXPORT jbyteArray JNICALL Java_hdf_hdf5lib_H5_H5Rcreate_1object(JNIEnv *, jclass, jlong, jstring, jlong); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Rcreate_region + * Signature: (JLjava/lang/String;J)[B + */ +JNIEXPORT jbyteArray JNICALL Java_hdf_hdf5lib_H5_H5Rcreate_1region(JNIEnv *, jclass, jlong, jstring, jlong, + jlong); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Rcreate_attr + * Signature: (JLjava/lang/String;Ljava/lang/String;)[B + */ +JNIEXPORT jbyteArray JNICALL Java_hdf_hdf5lib_H5_H5Rcreate_1attr(JNIEnv *, jclass, jlong, jstring, jstring, + jlong); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Rdestroy + * Signature: ([B)V + */ +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Rdestroy(JNIEnv *, jclass, jbyteArray); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Rget_type + * Signature: ([B)I + */ +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Rget_1type(JNIEnv *, jclass, jbyteArray); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Requal + * Signature: ([B[B)Z + */ +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Requal(JNIEnv *, jclass, jbyteArray, jbyteArray); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Rcopy + * Signature: ([B)[B + */ +JNIEXPORT jbyteArray JNICALL Java_hdf_hdf5lib_H5_H5Rcopy(JNIEnv *, jclass, jbyteArray); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Ropen_object + * Signature: ([BJJ)J + */ +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Ropen_1object(JNIEnv *, jclass, jbyteArray, jlong, jlong); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Ropen_region + * Signature: ([BJJ)J + */ +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Ropen_1region(JNIEnv *, jclass, jbyteArray, jlong, jlong); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Ropen_attr + * Signature: ([BJJ)J + */ +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Ropen_1attr(JNIEnv *, jclass, jbyteArray, jlong, jlong); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Rget_obj_type3 + * Signature: ([BJ)I + */ +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Rget_1obj_1type3(JNIEnv *, jclass, jbyteArray, jlong); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Rget_file_name + * Signature: ([B)Ljava/lang/String; + */ +JNIEXPORT jstring JNICALL Java_hdf_hdf5lib_H5_H5Rget_1file_1name(JNIEnv *, jclass, jbyteArray); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Rget_obj_name + * Signature: ([BJ)Ljava/lang/String; + */ +JNIEXPORT jstring JNICALL Java_hdf_hdf5lib_H5_H5Rget_1obj_1name(JNIEnv *, jclass, jbyteArray, jlong); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Rget_attr_name + * Signature: ([B)Ljava/lang/String; + */ +JNIEXPORT jstring JNICALL Java_hdf_hdf5lib_H5_H5Rget_1attr_1name(JNIEnv *, jclass, jbyteArray); + +/* H5R: HDF5 1.8 Reference API Functions */ + /* * Class: hdf_hdf5lib_H5 * Method: H5Rcreate * Signature: ([BJLjava/lang/String;IJ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Rcreate - (JNIEnv *, jclass, jbyteArray, jlong, jstring, jint, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Rcreate(JNIEnv *, jclass, jbyteArray, jlong, jstring, jint, + jlong); /* * Class: hdf_hdf5lib_H5 * Method: _H5Rdereference * Signature: (JJI[B)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Rdereference - (JNIEnv *, jclass, jlong, jlong, jint, jbyteArray); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Rdereference(JNIEnv *, jclass, jlong, jlong, jint, + jbyteArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Rget_region * Signature: (JI[B)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Rget_1region - (JNIEnv *, jclass, jlong, jint, jbyteArray); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Rget_1region(JNIEnv *, jclass, jlong, jint, jbyteArray); /* * Class: hdf_hdf5lib_H5 * Method: H5G_obj_t H5Rget_obj_type * Signature: (JI[B)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Rget_1obj_1type - (JNIEnv *, jclass, jlong, jint, jbyteArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Rget_1obj_1type(JNIEnv *, jclass, jlong, jint, jbyteArray); /* * Class: hdf_hdf5lib_H5 * Method: int H5Rget_obj_type2 * Signature: (JI[B[I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Rget_1obj_1type2 - (JNIEnv *, jclass, jlong, jint, jbyteArray, jintArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Rget_1obj_1type2(JNIEnv *, jclass, jlong, jint, jbyteArray, + jintArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Rget_name * Signature: (JI[B[Ljava/lang/String;J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Rget_1name - (JNIEnv *, jclass, jlong, jint, jbyteArray, jobjectArray, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Rget_1name(JNIEnv *, jclass, jlong, jint, jbyteArray, + jobjectArray, jlong); #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5R */ +#endif /* Included_hdf_hdf5lib_H5_H5R */ diff --git a/java/src/jni/h5sImp.c b/java/src/jni/h5sImp.c index eedd42e..c3a8460 100644 --- a/java/src/jni/h5sImp.c +++ b/java/src/jni/h5sImp.c @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -37,14 +37,13 @@ extern "C" { * Signature: (I)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Screate - (JNIEnv *env, jclass clss, jint type) +Java_hdf_hdf5lib_H5__1H5Screate(JNIEnv *env, jclass clss, jint type) { hid_t retVal = H5I_INVALID_HID; UNUSED(clss); - if ((retVal = H5Screate((H5S_class_t) type)) < 0) + if ((retVal = H5Screate((H5S_class_t)type)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -57,18 +56,18 @@ done: * Signature: (I[J[J)G */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Screate_1simple - (JNIEnv *env, jclass clss, jint rank, jlongArray dims, jlongArray maxdims) +Java_hdf_hdf5lib_H5__1H5Screate_1simple(JNIEnv *env, jclass clss, jint rank, jlongArray dims, + jlongArray maxdims) { - jboolean isCopy; - hsize_t *sa = NULL; - hsize_t *msa = NULL; - hsize_t *lp = NULL; - jlong *dimsP = NULL, *maxdimsP = NULL; - jlong *jlp = NULL; - jsize drank = 0, mrank = 0; - int i; - hid_t retVal = H5I_INVALID_HID; + jboolean isCopy; + hsize_t *sa = NULL; + hsize_t *msa = NULL; + hsize_t *lp = NULL; + jlong * dimsP = NULL, *maxdimsP = NULL; + jlong * jlp = NULL; + jsize drank = 0, mrank = 0; + int i; + hid_t retVal = H5I_INVALID_HID; UNUSED(clss); @@ -97,29 +96,29 @@ Java_hdf_hdf5lib_H5__1H5Screate_1simple PIN_LONG_ARRAY(ENVONLY, dims, dimsP, &isCopy, "H5Screate_simple: dims not pinned"); - if (NULL == (sa = lp = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Screate_simple: failed to allocate dims buffer") + if (NULL == (sa = lp = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Screate_simple: failed to allocate dims buffer"); - jlp = (jlong *) dimsP; + jlp = (jlong *)dimsP; for (i = 0; i < rank; i++) { - *lp = (hsize_t) *jlp; + *lp = (hsize_t)*jlp; lp++; jlp++; } /* end for */ if (NULL == maxdims) { maxdimsP = NULL; - msa = (hsize_t *)maxdimsP; + msa = (hsize_t *)maxdimsP; } else { PIN_LONG_ARRAY(ENVONLY, maxdims, maxdimsP, &isCopy, "H5Screate_simple: maxdims not pinned"); - if (NULL == (msa = lp = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Screate_simple: failed to allocate maxdims buffer") + if (NULL == (msa = lp = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Screate_simple: failed to allocate maxdims buffer"); - jlp = (jlong *) maxdimsP; + jlp = (jlong *)maxdimsP; for (i = 0; i < mrank; i++) { - *lp = (hsize_t) *jlp; + *lp = (hsize_t)*jlp; lp++; jlp++; } /* end for */ @@ -147,8 +146,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Scopy - (JNIEnv *env, jclass clss, jlong space_id) +Java_hdf_hdf5lib_H5__1H5Scopy(JNIEnv *env, jclass clss, jlong space_id) { hid_t retVal = H5I_INVALID_HID; @@ -162,9 +160,10 @@ done: } /* end Java_hdf_hdf5lib_H5__1H5Scopy */ #ifdef notdef -// 10/28/99 -- added code to copy the array -- this is not used, -// but serves as a reminder in case we try to implement this in -// the future.... +/* 10/28/99 -- added code to copy the array -- this is not used, + * but serves as a reminder in case we try to implement this in + * the future.... + */ /* * Note: the argument coord is actually long coord[][], which has been * flattened by the caller. @@ -176,12 +175,12 @@ done: * Signature: (JII[J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sselect_1elements - (JNIEnv *env, jclass clss, jlong space_id, jint op, jint num_elemn, jlongArray coords) +Java_hdf_hdf5lib_H5_H5Sselect_1elements(JNIEnv *env, jclass clss, jlong space_id, jint op, jint num_elemn, + jlongArray coords) { jboolean isCopy; hssize_t *sa = NULL; - jlong *P = NULL; + jlong * P = NULL; jint i; int rank; herr_t status = FAIL; @@ -193,8 +192,8 @@ Java_hdf_hdf5lib_H5_H5Sselect_1elements PIN_LONG_ARRAY(ENVONLY, coords, P, &isCopy, "H5Sselect_elements: coords not pinned"); - if (NULL == (sa = (hssize_t *) HDmalloc( (size_t)num_elemn * 2 * sizeof(hssize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sselect_elements: failed to allocate coordinate buffer"); + if (NULL == (sa = (hssize_t *)HDmalloc((size_t)num_elemn * 2 * sizeof(hssize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_elements: failed to allocate coordinate buffer"); for (i = 0; i < (num_elemn * 2); i++) { sa[i] = P[i]; @@ -219,18 +218,18 @@ done: * Signature: (JII[B)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sselect_1elements - (JNIEnv *env, jclass clss, jlong space_id, jint op, jint num_elemn, jbyteArray coords) +Java_hdf_hdf5lib_H5_H5Sselect_1elements(JNIEnv *env, jclass clss, jlong space_id, jint op, jint num_elemn, + jbyteArray coords) { - jboolean isCopy; - hsize_t *lp = NULL; - hsize_t *llp = NULL; - jlong *jlp = NULL; - jbyte *P = NULL; - jsize size; - int ii; - int nlongs; - herr_t status = FAIL; + jboolean isCopy; + hsize_t *lp = NULL; + hsize_t *llp = NULL; + jlong * jlp = NULL; + jbyte * P = NULL; + jsize size; + int ii; + int nlongs; + herr_t status = FAIL; UNUSED(clss); @@ -246,18 +245,19 @@ Java_hdf_hdf5lib_H5_H5Sselect_1elements nlongs = (int)((size_t)size / sizeof(jlong)); - if (NULL == (lp = (hsize_t *) HDmalloc((size_t)nlongs * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sselect_elements: failed to allocate coordinate buffer"); + if (NULL == (lp = (hsize_t *)HDmalloc((size_t)nlongs * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_elements: failed to allocate coordinate buffer"); - jlp = (jlong *) P; + jlp = (jlong *)P; llp = lp; for (ii = 0; ii < nlongs; ii++) { - *lp = (hsize_t) *jlp; + *lp = (hsize_t)*jlp; lp++; jlp++; } /* end for */ - if ((status = H5Sselect_elements(space_id, (H5S_seloper_t)op, (size_t)num_elemn, (const hsize_t *)llp)) < 0) + if ((status = H5Sselect_elements(space_id, (H5S_seloper_t)op, (size_t)num_elemn, (const hsize_t *)llp)) < + 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -275,8 +275,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sselect_1all - (JNIEnv *env, jclass clss, jlong space_id) +Java_hdf_hdf5lib_H5_H5Sselect_1all(JNIEnv *env, jclass clss, jlong space_id) { herr_t retVal = FAIL; @@ -286,7 +285,7 @@ Java_hdf_hdf5lib_H5_H5Sselect_1all H5_LIBRARY_ERROR(ENVONLY); done: - return (jint) retVal; + return (jint)retVal; } /* end Java_hdf_hdf5lib_H5_H5Sselect_1all */ /* @@ -295,8 +294,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sselect_1none - (JNIEnv *env, jclass clss, jlong space_id) +Java_hdf_hdf5lib_H5_H5Sselect_1none(JNIEnv *env, jclass clss, jlong space_id) { herr_t retVal = FAIL; @@ -306,7 +304,7 @@ Java_hdf_hdf5lib_H5_H5Sselect_1none H5_LIBRARY_ERROR(ENVONLY); done: - return (jint) retVal; + return (jint)retVal; } /* end Java_hdf_hdf5lib_H5_H5Sselect_1none */ /* @@ -315,8 +313,7 @@ done: * Signature: (J)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Sselect_1valid - (JNIEnv *env, jclass clss, jlong space_id) +Java_hdf_hdf5lib_H5_H5Sselect_1valid(JNIEnv *env, jclass clss, jlong space_id) { htri_t bval = JNI_FALSE; @@ -337,8 +334,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1npoints - (JNIEnv *env, jclass clss, jlong space_id) +Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1npoints(JNIEnv *env, jclass clss, jlong space_id) { hssize_t retVal = -1; @@ -348,7 +344,7 @@ Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1npoints H5_LIBRARY_ERROR(ENVONLY); done: - return (jlong) retVal; + return (jlong)retVal; } /* end Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1npoints */ /* @@ -357,8 +353,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Sget_1select_1npoints - (JNIEnv *env, jclass clss, jlong space_id) +Java_hdf_hdf5lib_H5_H5Sget_1select_1npoints(JNIEnv *env, jclass clss, jlong space_id) { hssize_t retVal = -1; @@ -368,7 +363,7 @@ Java_hdf_hdf5lib_H5_H5Sget_1select_1npoints H5_LIBRARY_ERROR(ENVONLY); done: - return (jlong) retVal; + return (jlong)retVal; } /* end Java_hdf_hdf5lib_H5_H5Sget_1select_1npoints */ /* @@ -377,8 +372,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sget_1select_1type - (JNIEnv *env, jclass clss, jlong space_id) +Java_hdf_hdf5lib_H5_H5Sget_1select_1type(JNIEnv *env, jclass clss, jlong space_id) { int retVal = -1; @@ -388,7 +382,7 @@ Java_hdf_hdf5lib_H5_H5Sget_1select_1type H5_LIBRARY_ERROR(ENVONLY); done: - return (jint) retVal; + return (jint)retVal; } /* end Java_hdf_hdf5lib_H5_H5Sget_1select_1type */ /* @@ -397,8 +391,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1ndims - (JNIEnv *env, jclass clss, jlong space_id) +Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1ndims(JNIEnv *env, jclass clss, jlong space_id) { int retVal = -1; @@ -408,7 +401,7 @@ Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1ndims H5_LIBRARY_ERROR(ENVONLY); done: - return (jint) retVal; + return (jint)retVal; } /* end Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1ndims */ /* @@ -417,23 +410,23 @@ done: * Signature: (J[J[J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1dims - (JNIEnv *env, jclass clss, jlong space_id, jlongArray dims, jlongArray maxdims) +Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1dims(JNIEnv *env, jclass clss, jlong space_id, jlongArray dims, + jlongArray maxdims) { - jboolean isCopy; - hsize_t *sa = NULL; - hsize_t *msa = NULL; - jlong *dimsP = NULL, *maxdimsP = NULL; - int i; - int rank = -1; - int mrank; - int status = -1; + jboolean isCopy; + hsize_t *sa = NULL; + hsize_t *msa = NULL; + jlong * dimsP = NULL, *maxdimsP = NULL; + int i; + int rank = -1; + int mrank; + int status = -1; UNUSED(clss); if (NULL == dims) { dimsP = NULL; - sa = (hsize_t *) dimsP; + sa = (hsize_t *)dimsP; } else { PIN_LONG_ARRAY(ENVONLY, dims, dimsP, &isCopy, "H5Sget_simple_extent_dims: dims not pinned"); @@ -443,18 +436,18 @@ Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1dims H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_simple_extent_dims: dims array length < 0"); } - if (NULL == (sa = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_simple_extent_dims: failed to allocate dimension buffer"); + if (NULL == (sa = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_simple_extent_dims: failed to allocate dimension buffer"); } if (NULL == maxdims) { maxdimsP = NULL; - msa = (hsize_t *) maxdimsP; + msa = (hsize_t *)maxdimsP; } else { PIN_LONG_ARRAY(ENVONLY, maxdims, maxdimsP, &isCopy, "H5Sget_simple_extent_dims: maxdims not pinned"); - if ((mrank = (int) ENVPTR->GetArrayLength(ENVONLY, maxdims)) < 0) { + if ((mrank = (int)ENVPTR->GetArrayLength(ENVONLY, maxdims)) < 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_simple_extent_dims: maxdims array length < 0"); } @@ -462,10 +455,11 @@ Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1dims if (rank < 0) rank = mrank; else if (mrank != rank) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_simple_extent_dims: maxdims rank not same as dims"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_simple_extent_dims: maxdims rank not same as dims"); - if (NULL == (msa = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_simple_extent_dims: failed to allocate maximum dimension buffer"); + if (NULL == (msa = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "H5Sget_simple_extent_dims: failed to allocate maximum dimension buffer"); } if ((status = H5Sget_simple_extent_dims(space_id, (hsize_t *)sa, (hsize_t *)msa)) < 0) @@ -502,8 +496,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1type - (JNIEnv *env, jclass clss, jlong space_id) +Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1type(JNIEnv *env, jclass clss, jlong space_id) { H5S_class_t retVal = H5S_NO_CLASS; @@ -525,18 +518,18 @@ done: * Signature: (JI[J[J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sset_1extent_1simple - (JNIEnv *env, jclass clss, jlong space_id, jint rank, jlongArray dims, jlongArray maxdims) +Java_hdf_hdf5lib_H5_H5Sset_1extent_1simple(JNIEnv *env, jclass clss, jlong space_id, jint rank, + jlongArray dims, jlongArray maxdims) { - jboolean isCopy; - hsize_t *sa = NULL; - hsize_t *msa = NULL; - hsize_t *lp = NULL; - jlong *dimsP = NULL, *maxdimsP = NULL; - jlong *jlp = NULL; - jsize drank, mrank; - int i; - herr_t status = FAIL; + jboolean isCopy; + hsize_t *sa = NULL; + hsize_t *msa = NULL; + hsize_t *lp = NULL; + jlong * dimsP = NULL, *maxdimsP = NULL; + jlong * jlp = NULL; + jsize drank, mrank; + int i; + herr_t status = FAIL; UNUSED(clss); @@ -563,35 +556,36 @@ Java_hdf_hdf5lib_H5_H5Sset_1extent_1simple PIN_LONG_ARRAY(ENVONLY, dims, dimsP, &isCopy, "H5Sset_extent_simple: dims not pinned"); - if (NULL == (sa = lp = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sset_extent_simple: failed to allocate dimension buffer"); + if (NULL == (sa = lp = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sset_extent_simple: failed to allocate dimension buffer"); - jlp = (jlong *) dimsP; + jlp = (jlong *)dimsP; for (i = 0; i < rank; i++) { - *lp = (hsize_t) *jlp; + *lp = (hsize_t)*jlp; lp++; jlp++; } /* end for */ if (NULL == maxdims) { maxdimsP = NULL; - msa = (hsize_t *) maxdimsP; + msa = (hsize_t *)maxdimsP; } else { PIN_LONG_ARRAY(ENVONLY, maxdims, maxdimsP, &isCopy, "H5Sset_extent_simple: maxdims not pinned"); - if (NULL == (msa = lp = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sset_extent_simple: failed to allocate maximum dimension buffer"); + if (NULL == (msa = lp = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "H5Sset_extent_simple: failed to allocate maximum dimension buffer"); - jlp = (jlong *) maxdimsP; + jlp = (jlong *)maxdimsP; for (i = 0; i < rank; i++) { - *lp = (hsize_t) *jlp; + *lp = (hsize_t)*jlp; lp++; jlp++; } /* end for */ } - if ((status = H5Sset_extent_simple(space_id, rank, (hsize_t *) sa, (hsize_t *) msa)) < 0) + if ((status = H5Sset_extent_simple(space_id, rank, (hsize_t *)sa, (hsize_t *)msa)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -613,8 +607,7 @@ done: * Signature: (J)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Sis_1simple - (JNIEnv *env, jclass clss, jlong space_id) +Java_hdf_hdf5lib_H5_H5Sis_1simple(JNIEnv *env, jclass clss, jlong space_id) { htri_t bval = JNI_FALSE; @@ -635,16 +628,15 @@ done: * Signature: (J[B)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Soffset_1simple - (JNIEnv *env, jclass clss, jlong space_id, jbyteArray offset) +Java_hdf_hdf5lib_H5_H5Soffset_1simple(JNIEnv *env, jclass clss, jlong space_id, jbyteArray offset) { jboolean isCopy; hssize_t *sa = NULL; hssize_t *lp = NULL; size_t rank; jsize i; - jbyte *P = NULL; - jlong *jlp = NULL; + jbyte * P = NULL; + jlong * jlp = NULL; herr_t status = FAIL; UNUSED(clss); @@ -657,21 +649,21 @@ Java_hdf_hdf5lib_H5_H5Soffset_1simple H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Soffset_simple: offset array length < 0"); } - rank = (size_t) i / sizeof(jlong); + rank = (size_t)i / sizeof(jlong); - if (NULL == (sa = lp = (hssize_t *) HDmalloc((size_t)rank * sizeof(hssize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Soffset_simple: failed to allocate offset buffer"); + if (NULL == (sa = lp = (hssize_t *)HDmalloc((size_t)rank * sizeof(hssize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Soffset_simple: failed to allocate offset buffer"); - jlp = (jlong *) P; - for (i = 0; (size_t) i < rank; i++) { - *lp = (hssize_t) *jlp; + jlp = (jlong *)P; + for (i = 0; (size_t)i < rank; i++) { + *lp = (hssize_t)*jlp; lp++; jlp++; } /* end for */ } else { - P = NULL; - sa = (hssize_t *) P; + P = NULL; + sa = (hssize_t *)P; } if ((status = H5Soffset_simple(space_id, sa)) < 0) @@ -692,8 +684,7 @@ done: * Signature: (JJ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sextent_1copy - (JNIEnv *env, jclass clss, jlong space_id, jlong src_id) +Java_hdf_hdf5lib_H5_H5Sextent_1copy(JNIEnv *env, jclass clss, jlong space_id, jlong src_id) { herr_t retVal = FAIL; @@ -712,8 +703,7 @@ done: * Signature: (JJ)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Sextent_1equal - (JNIEnv *env, jclass clss, jlong space_id, jlong src_id) +Java_hdf_hdf5lib_H5_H5Sextent_1equal(JNIEnv *env, jclass clss, jlong space_id, jlong src_id) { htri_t bval = JNI_FALSE; @@ -734,8 +724,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sset_1extent_1none - (JNIEnv *env, jclass clss, jlong space_id) +Java_hdf_hdf5lib_H5_H5Sset_1extent_1none(JNIEnv *env, jclass clss, jlong space_id) { herr_t retVal = FAIL; @@ -754,17 +743,17 @@ done: * Signature: (JI[J[J[J[J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sselect_1hyperslab - (JNIEnv *env, jclass clss, jlong space_id, jint op, jlongArray start, jlongArray stride, jlongArray count, jlongArray block) +Java_hdf_hdf5lib_H5_H5Sselect_1hyperslab(JNIEnv *env, jclass clss, jlong space_id, jint op, jlongArray start, + jlongArray stride, jlongArray count, jlongArray block) { - jboolean isCopy; - hsize_t *strt = NULL, *strd = NULL, *cnt = NULL, *blk = NULL; - hsize_t *lp = NULL; - jlong *startP = NULL, *strideP = NULL, *countP = NULL, *blockP = NULL; - jlong *jlp = NULL; - jsize start_rank, stride_rank, count_rank, block_rank; - int i; - herr_t status = FAIL; + jboolean isCopy; + hsize_t *strt = NULL, *strd = NULL, *cnt = NULL, *blk = NULL; + hsize_t *lp = NULL; + jlong * startP = NULL, *strideP = NULL, *countP = NULL, *blockP = NULL; + jlong * jlp = NULL; + jsize start_rank, stride_rank, count_rank, block_rank; + int i; + herr_t status = FAIL; UNUSED(clss); @@ -787,31 +776,31 @@ Java_hdf_hdf5lib_H5_H5Sselect_1hyperslab PIN_LONG_ARRAY(ENVONLY, start, startP, &isCopy, "H5Sselect_hyperslab: start not pinned"); - if (NULL == (strt = lp = (hsize_t *) HDmalloc((size_t)start_rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate start buffer"); + if (NULL == (strt = lp = (hsize_t *)HDmalloc((size_t)start_rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate start buffer"); - jlp = (jlong *) startP; + jlp = (jlong *)startP; for (i = 0; i < start_rank; i++) { - *lp = (hsize_t) *jlp; + *lp = (hsize_t)*jlp; lp++; jlp++; } /* end if */ PIN_LONG_ARRAY(ENVONLY, count, countP, &isCopy, "H5Sselect_hyperslab: count not pinned"); - if (NULL == (cnt = lp = (hsize_t *) HDmalloc((size_t)count_rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate count buffer"); + if (NULL == (cnt = lp = (hsize_t *)HDmalloc((size_t)count_rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate count buffer"); - jlp = (jlong *) countP; + jlp = (jlong *)countP; for (i = 0; i < count_rank; i++) { - *lp = (hsize_t) *jlp; + *lp = (hsize_t)*jlp; lp++; jlp++; } /* end if */ if (NULL == stride) { strideP = NULL; - strd = (hsize_t *) strideP; + strd = (hsize_t *)strideP; } else { if ((stride_rank = ENVPTR->GetArrayLength(ENVONLY, stride)) < 0) { @@ -824,12 +813,12 @@ Java_hdf_hdf5lib_H5_H5Sselect_1hyperslab PIN_LONG_ARRAY(ENVONLY, stride, strideP, &isCopy, "H5Sselect_hyperslab: stride not pinned"); - if (NULL == (strd = lp = (hsize_t *) HDmalloc((size_t)stride_rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate stride buffer"); + if (NULL == (strd = lp = (hsize_t *)HDmalloc((size_t)stride_rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate stride buffer"); - jlp = (jlong *) strideP; + jlp = (jlong *)strideP; for (i = 0; i < stride_rank; i++) { - *lp = (hsize_t) *jlp; + *lp = (hsize_t)*jlp; lp++; jlp++; } /* end if */ @@ -837,7 +826,7 @@ Java_hdf_hdf5lib_H5_H5Sselect_1hyperslab if (NULL == block) { blockP = NULL; - blk = (hsize_t *) blockP; + blk = (hsize_t *)blockP; } else { if ((block_rank = ENVPTR->GetArrayLength(ENVONLY, block)) < 0) { @@ -850,19 +839,19 @@ Java_hdf_hdf5lib_H5_H5Sselect_1hyperslab PIN_LONG_ARRAY(ENVONLY, block, blockP, &isCopy, "H5Sselect_hyperslab: block not pinned"); - if (NULL == (blk = lp = (hsize_t *) HDmalloc((size_t)block_rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate block buffer"); + if (NULL == (blk = lp = (hsize_t *)HDmalloc((size_t)block_rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_hyperslab: failed to allocate block buffer"); - jlp = (jlong *) blockP; + jlp = (jlong *)blockP; for (i = 0; i < block_rank; i++) { - *lp = (hsize_t) *jlp; + *lp = (hsize_t)*jlp; lp++; jlp++; } /* end for */ } - if ((status = H5Sselect_hyperslab(space_id, (H5S_seloper_t) op, (const hsize_t *) strt, (const hsize_t *) strd, - (const hsize_t *) cnt, (const hsize_t *) blk)) < 0) + if ((status = H5Sselect_hyperslab(space_id, (H5S_seloper_t)op, (const hsize_t *)strt, + (const hsize_t *)strd, (const hsize_t *)cnt, (const hsize_t *)blk)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -892,8 +881,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5__1H5Sclose - (JNIEnv *env, jclass clss, jlong space_id) +Java_hdf_hdf5lib_H5__1H5Sclose(JNIEnv *env, jclass clss, jlong space_id) { herr_t retVal = FAIL; @@ -912,14 +900,13 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Sget_1select_1hyper_1nblocks - (JNIEnv *env, jclass clss, jlong spaceid) +Java_hdf_hdf5lib_H5_H5Sget_1select_1hyper_1nblocks(JNIEnv *env, jclass clss, jlong spaceid) { hssize_t retVal = -1; UNUSED(clss); - if ((retVal = H5Sget_select_hyper_nblocks((hid_t) spaceid)) < 0) + if ((retVal = H5Sget_select_hyper_nblocks((hid_t)spaceid)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -932,14 +919,13 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Sget_1select_1elem_1npoints - (JNIEnv *env, jclass clss, jlong spaceid) +Java_hdf_hdf5lib_H5_H5Sget_1select_1elem_1npoints(JNIEnv *env, jclass clss, jlong spaceid) { hssize_t retVal = -1; UNUSED(clss); - if ((retVal = H5Sget_select_elem_npoints((hid_t) spaceid)) < 0) + if ((retVal = H5Sget_select_elem_npoints((hid_t)spaceid)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -952,16 +938,16 @@ done: * Signature: (JJJ[J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sget_1select_1hyper_1blocklist - (JNIEnv *env, jclass clss, jlong spaceid, jlong startblock, jlong numblocks, jlongArray buf) +Java_hdf_hdf5lib_H5_H5Sget_1select_1hyper_1blocklist(JNIEnv *env, jclass clss, jlong spaceid, + jlong startblock, jlong numblocks, jlongArray buf) { - jboolean isCopy; - hsize_t *ba = NULL; - size_t i, buf_size; - jlong *bufP = NULL; - jsize buflen; - int rank; - herr_t status = FAIL; + jboolean isCopy; + hsize_t *ba = NULL; + size_t i, buf_size; + jlong * bufP = NULL; + jsize buflen; + int rank; + herr_t status = FAIL; UNUSED(clss); @@ -986,15 +972,17 @@ Java_hdf_hdf5lib_H5_H5Sget_1select_1hyper_1blocklist PIN_LONG_ARRAY(ENVONLY, buf, bufP, &isCopy, "H5Sget_select_hyper_blocklist: buffer not pinned"); - buf_size = (size_t) numblocks * (size_t) 2 * (size_t) rank * sizeof(hsize_t); - if (NULL == (ba = (hsize_t *) HDmalloc(buf_size))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_select_hyper_blocklist: failed to allocate block list buffer"); + buf_size = (size_t)numblocks * (size_t)2 * (size_t)rank * sizeof(hsize_t); + if (NULL == (ba = (hsize_t *)HDmalloc(buf_size))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "H5Sget_select_hyper_blocklist: failed to allocate block list buffer"); - if ((status = H5Sget_select_hyper_blocklist((hid_t)spaceid, (hsize_t) startblock, (hsize_t) numblocks, (hsize_t *)ba)) < 0) + if ((status = H5Sget_select_hyper_blocklist((hid_t)spaceid, (hsize_t)startblock, (hsize_t)numblocks, + (hsize_t *)ba)) < 0) H5_LIBRARY_ERROR(ENVONLY); for (i = 0; i < (buf_size / sizeof(hsize_t)); i++) { - bufP[i] = (jlong) ba[i]; + bufP[i] = (jlong)ba[i]; } /* end for */ done: @@ -1012,15 +1000,15 @@ done: * Signature: (JJJ[J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sget_1select_1elem_1pointlist - (JNIEnv *env, jclass clss, jlong spaceid, jlong startpoint, jlong numpoints, jlongArray buf) +Java_hdf_hdf5lib_H5_H5Sget_1select_1elem_1pointlist(JNIEnv *env, jclass clss, jlong spaceid, jlong startpoint, + jlong numpoints, jlongArray buf) { - jboolean isCopy; - hsize_t *ba = NULL; - jlong *bufP = NULL; - jsize buflen; - int i, rank; - herr_t status = FAIL; + jboolean isCopy; + hsize_t *ba = NULL; + jlong * bufP = NULL; + jsize buflen; + int i, rank; + herr_t status = FAIL; UNUSED(clss); @@ -1043,14 +1031,15 @@ Java_hdf_hdf5lib_H5_H5Sget_1select_1elem_1pointlist PIN_LONG_ARRAY(ENVONLY, buf, bufP, &isCopy, "H5Sget_select_elem_pointlist: buffer not pinned"); - if (NULL == (ba = (hsize_t *) HDmalloc(((size_t)numpoints * (size_t)rank) * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_select_elem_pointlist: failed to allocate point list buffer"); + if (NULL == (ba = (hsize_t *)HDmalloc(((size_t)numpoints * (size_t)rank) * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_select_elem_pointlist: failed to allocate point list buffer"); - if ((status = H5Sget_select_elem_pointlist((hid_t)spaceid, (hsize_t)startpoint, (hsize_t)numpoints, (hsize_t *)ba)) < 0) + if ((status = H5Sget_select_elem_pointlist((hid_t)spaceid, (hsize_t)startpoint, (hsize_t)numpoints, + (hsize_t *)ba)) < 0) H5_LIBRARY_ERROR(ENVONLY); for (i = 0; i < (numpoints * rank); i++) { - bufP[i] = (jlong) ba[i]; + bufP[i] = (jlong)ba[i]; } /* end for */ done: @@ -1068,16 +1057,16 @@ done: * Signature: (J[J[J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sget_1select_1bounds - (JNIEnv *env, jclass clss, jlong spaceid, jlongArray start, jlongArray end) +Java_hdf_hdf5lib_H5_H5Sget_1select_1bounds(JNIEnv *env, jclass clss, jlong spaceid, jlongArray start, + jlongArray end) { - jboolean isCopy; - hsize_t *strt = NULL; - hsize_t *en = NULL; - size_t i; - jlong *startP = NULL, *endP = NULL; - jsize rank; - herr_t status = FAIL; + jboolean isCopy; + hsize_t *strt = NULL; + hsize_t *en = NULL; + size_t i; + jlong * startP = NULL, *endP = NULL; + jsize rank; + herr_t status = FAIL; UNUSED(clss); @@ -1093,20 +1082,20 @@ Java_hdf_hdf5lib_H5_H5Sget_1select_1bounds H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_select_bounds: start array length < 0"); } - if (NULL == (strt = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_select_bounds: failed to allocate start buffer"); + if (NULL == (strt = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_select_bounds: failed to allocate start buffer"); PIN_LONG_ARRAY(ENVONLY, end, endP, &isCopy, "H5Sget_select_bounds: end not pinned"); - if (NULL == (en = (hsize_t *) HDmalloc((size_t)rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_select_bounds: failed to allocate end buffer"); + if (NULL == (en = (hsize_t *)HDmalloc((size_t)rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_select_bounds: failed to allocate end buffer"); - if ((status = H5Sget_select_bounds((hid_t) spaceid, (hsize_t *) strt, (hsize_t *) en)) < 0) + if ((status = H5Sget_select_bounds((hid_t)spaceid, (hsize_t *)strt, (hsize_t *)en)) < 0) H5_LIBRARY_ERROR(ENVONLY); - for (i = 0; i < (size_t) rank; i++) { - startP[i] = (jlong) strt[i]; - endP[i] = (jlong) en[i]; + for (i = 0; i < (size_t)rank; i++) { + startP[i] = (jlong)strt[i]; + endP[i] = (jlong)en[i]; } /* end for */ done: @@ -1128,12 +1117,11 @@ done: * Signature: (J)[B */ JNIEXPORT jbyteArray JNICALL -Java_hdf_hdf5lib_H5_H5Sencode - (JNIEnv *env, jclass clss, jlong obj_id) +Java_hdf_hdf5lib_H5_H5Sencode(JNIEnv *env, jclass clss, jlong obj_id) { - unsigned char *bufPtr = NULL; - size_t buf_size = 0; - herr_t status = FAIL; + unsigned char *bufPtr = NULL; + size_t buf_size = 0; + herr_t status = FAIL; jbyteArray returnedArray = NULL; UNUSED(clss); @@ -1147,16 +1135,16 @@ Java_hdf_hdf5lib_H5_H5Sencode if (buf_size == 0) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sencode: buf_size = 0"); - if (NULL == (bufPtr = (unsigned char *) HDcalloc((size_t) 1, buf_size))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sencode: failed to allocate encoding buffer"); + if (NULL == (bufPtr = (unsigned char *)HDcalloc((size_t)1, buf_size))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sencode: failed to allocate encoding buffer"); - if ((status = H5Sencode2((hid_t) obj_id, bufPtr, &buf_size, H5P_DEFAULT)) < 0) + if ((status = H5Sencode2((hid_t)obj_id, bufPtr, &buf_size, H5P_DEFAULT)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (NULL == (returnedArray = ENVPTR->NewByteArray(ENVONLY, (jsize) buf_size))) + if (NULL == (returnedArray = ENVPTR->NewByteArray(ENVONLY, (jsize)buf_size))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - ENVPTR->SetByteArrayRegion(ENVONLY, returnedArray, 0, (jsize) buf_size, (jbyte *) bufPtr); + ENVPTR->SetByteArrayRegion(ENVONLY, returnedArray, 0, (jsize)buf_size, (jbyte *)bufPtr); CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); done: @@ -1172,12 +1160,11 @@ done: * Signature: ([B)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Sdecode - (JNIEnv *env, jclass clss, jbyteArray buf) +Java_hdf_hdf5lib_H5_H5Sdecode(JNIEnv *env, jclass clss, jbyteArray buf) { - jboolean isCopy; - jbyte *bufP = NULL; - hid_t sid = H5I_INVALID_HID; + jboolean isCopy; + jbyte * bufP = NULL; + hid_t sid = H5I_INVALID_HID; UNUSED(clss); @@ -1202,8 +1189,7 @@ done: * Signature: (J)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Sis_1regular_1hyperslab - (JNIEnv *env, jclass clss, jlong obj_id) +Java_hdf_hdf5lib_H5_H5Sis_1regular_1hyperslab(JNIEnv *env, jclass clss, jlong obj_id) { htri_t bval = JNI_FALSE; @@ -1224,15 +1210,15 @@ done: * Signature: (J[J[J[J[J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab - (JNIEnv *env, jclass clss, jlong space_id, jlongArray start, jlongArray stride, jlongArray count, jlongArray block) +Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab(JNIEnv *env, jclass clss, jlong space_id, jlongArray start, + jlongArray stride, jlongArray count, jlongArray block) { - jboolean isCopy; - hsize_t *strt = NULL, *strd = NULL, *cnt = NULL, *blk = NULL; - jlong *startP = NULL, *strideP = NULL, *countP = NULL, *blockP = NULL; - jsize start_rank = -1, stride_rank = -1, count_rank = -1, block_rank = -1; - int i, rank = -1; - herr_t status = FAIL; + jboolean isCopy; + hsize_t *strt = NULL, *strd = NULL, *cnt = NULL, *blk = NULL; + jlong * startP = NULL, *strideP = NULL, *countP = NULL, *blockP = NULL; + jsize start_rank = -1, stride_rank = -1, count_rank = -1, block_rank = -1; + int i, rank = -1; + herr_t status = FAIL; UNUSED(clss); @@ -1244,7 +1230,7 @@ Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab if (NULL == start) { startP = NULL; - strt = (hsize_t *) startP; + strt = (hsize_t *)startP; } else { if ((start_rank = ENVPTR->GetArrayLength(ENVONLY, start)) < 0) { @@ -1253,17 +1239,18 @@ Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab } if (start_rank != rank) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: start rank doesn't match dataspace rank!"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, + "H5Sget_regular_hyperslab: start rank doesn't match dataspace rank!"); PIN_LONG_ARRAY(ENVONLY, start, startP, &isCopy, "H5Sget_regular_hyperslab: start not pinned"); - if (NULL == (strt = (hsize_t *) HDmalloc((size_t)start_rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate start buffer"); + if (NULL == (strt = (hsize_t *)HDmalloc((size_t)start_rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate start buffer"); } if (NULL == stride) { strideP = NULL; - strd = (hsize_t *) strideP; + strd = (hsize_t *)strideP; } else { if ((stride_rank = ENVPTR->GetArrayLength(ENVONLY, stride)) < 0) { @@ -1272,17 +1259,18 @@ Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab } if (stride_rank != rank) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: stride rank doesn't match dataspace rank!"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, + "H5Sget_regular_hyperslab: stride rank doesn't match dataspace rank!"); PIN_LONG_ARRAY(ENVONLY, stride, strideP, &isCopy, "H5Sget_regular_hyperslab: stride not pinned"); - if (NULL == (strd = (hsize_t *) HDmalloc((size_t)stride_rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate stride buffer"); + if (NULL == (strd = (hsize_t *)HDmalloc((size_t)stride_rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate stride buffer"); } if (NULL == count) { countP = NULL; - cnt = (hsize_t *) countP; + cnt = (hsize_t *)countP; } else { if ((count_rank = ENVPTR->GetArrayLength(ENVONLY, count)) < 0) { @@ -1291,17 +1279,18 @@ Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab } if (count_rank != rank) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: count rank doesn't match dataspace rank!"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, + "H5Sget_regular_hyperslab: count rank doesn't match dataspace rank!"); PIN_LONG_ARRAY(ENVONLY, count, countP, &isCopy, "H5Sget_regular_hyperslab: count not pinned"); - if (NULL == (cnt = (hsize_t *) HDmalloc((size_t)count_rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate count buffer"); + if (NULL == (cnt = (hsize_t *)HDmalloc((size_t)count_rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate count buffer"); } if (NULL == block) { blockP = NULL; - blk = (hsize_t *) blockP; + blk = (hsize_t *)blockP; } else { if ((block_rank = ENVPTR->GetArrayLength(ENVONLY, block)) < 0) { @@ -1310,22 +1299,24 @@ Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab } if (block_rank != rank) - H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sget_regular_hyperslab: block rank doesn't match dataspace rank!"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, + "H5Sget_regular_hyperslab: block rank doesn't match dataspace rank!"); PIN_LONG_ARRAY(ENVONLY, block, blockP, &isCopy, "H5Sget_regular_hyperslab: block not pinned"); - if (NULL == (blk = (hsize_t *) HDmalloc((size_t)block_rank * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate block buffer"); + if (NULL == (blk = (hsize_t *)HDmalloc((size_t)block_rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sget_regular_hyperslab: failed to allocate block buffer"); } - if ((status = H5Sget_regular_hyperslab(space_id, (hsize_t *) strt, (hsize_t *) strd, (hsize_t *) cnt, (hsize_t *) blk)) < 0) + if ((status = H5Sget_regular_hyperslab(space_id, (hsize_t *)strt, (hsize_t *)strd, (hsize_t *)cnt, + (hsize_t *)blk)) < 0) H5_LIBRARY_ERROR(ENVONLY); for (i = 0; i < start_rank; i++) { - startP[i] = (jlong) strt[i]; - countP[i] = (jlong) cnt[i]; - strideP[i] = (jlong) strd[i]; - blockP[i] = (jlong) blk[i]; + startP[i] = (jlong)strt[i]; + countP[i] = (jlong)cnt[i]; + strideP[i] = (jlong)strd[i]; + blockP[i] = (jlong)blk[i]; } /* end for */ done: @@ -1349,6 +1340,389 @@ done: return; } /* end Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab */ +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Sselect_copy + * Signature: (JJ)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Sselect_1copy(JNIEnv *env, jclass clss, jlong dst_id, jlong src_id) +{ + herr_t status = FAIL; + + UNUSED(clss); + + if ((status = H5Sselect_copy((hid_t)dst_id, (hid_t)src_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + +done: + return; +} /* end Java_hdf_hdf5lib_H5_H5Sselect_1copy */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Sselect_shape_same + * Signature: (JJ)Z + */ +JNIEXPORT jboolean JNICALL +Java_hdf_hdf5lib_H5_H5Sselect_1shape_1same(JNIEnv *env, jclass clss, jlong space1_id, jlong space2_id) +{ + htri_t bval = JNI_FALSE; + + UNUSED(clss); + + if ((bval = H5Sselect_shape_same((hid_t)space1_id, (hid_t)space2_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + bval = (bval > 0) ? JNI_TRUE : JNI_FALSE; + +done: + return (jboolean)bval; +} /* end Java_hdf_hdf5lib_H5_H5Sselect_1shape_1same */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Sselect_adjust + * Signature: (J[J)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Sselect_1adjust(JNIEnv *env, jclass clss, jlong space_id, jlongArray offset) +{ + jboolean isCopy; + hssize_t *offst = NULL; + jlong * offsetP = NULL; + jsize offset_rank = -1; + int i, rank = -1; + herr_t status = FAIL; + + UNUSED(clss); + + if (space_id < 0) + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_adjust: invalid dataspace ID"); + + if ((rank = H5Sget_simple_extent_ndims(space_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + if (NULL == offset) { + offsetP = NULL; + offst = (hssize_t *)offsetP; + } + else { + if ((offset_rank = ENVPTR->GetArrayLength(ENVONLY, offset)) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_adjust: offset length < 0"); + } + + if (offset_rank != rank) + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_adjust: offset rank doesn't match dataspace rank!"); + + PIN_LONG_ARRAY(ENVONLY, offset, offsetP, &isCopy, "H5Sselect_adjust: offset not pinned"); + + if (NULL == (offst = (hssize_t *)HDmalloc((size_t)offset_rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_adjust: failed to allocate offset buffer"); + } + + if ((status = H5Sselect_adjust(space_id, (hssize_t *)offst)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + for (i = 0; i < offset_rank; i++) { + offsetP[i] = (jlong)offst[i]; + } /* end for */ + +done: + if (offst) + HDfree(offst); + if (offsetP) + UNPIN_LONG_ARRAY(ENVONLY, offset, offsetP, (status < 0) ? JNI_ABORT : 0); + + return; +} /* end Java_hdf_hdf5lib_H5_H5Sselect_1adjust */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Sselect_intersect_block + * Signature: (J[J[J)Z + */ +JNIEXPORT jboolean JNICALL +Java_hdf_hdf5lib_H5_H5Sselect_1intersect_1block(JNIEnv *env, jclass clss, jlong space_id, jlongArray start, + jlongArray end) +{ + htri_t bval = JNI_FALSE; + jboolean isCopy; + hsize_t *strt = NULL, *nd = NULL; + jlong * startP = NULL, *endP = NULL; + jsize start_rank = -1, end_rank = -1; + int i, rank = -1; + + UNUSED(clss); + + if (space_id < 0) + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_intersect_block: invalid dataspace ID"); + + if ((rank = H5Sget_simple_extent_ndims(space_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + if (NULL == start) { + startP = NULL; + strt = (hsize_t *)startP; + } + else { + if ((start_rank = ENVPTR->GetArrayLength(ENVONLY, start)) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_intersect_block: start length < 0"); + } + + if (start_rank != rank) + H5_BAD_ARGUMENT_ERROR(ENVONLY, + "H5Sselect_intersect_block: start rank doesn't match dataspace rank!"); + + PIN_LONG_ARRAY(ENVONLY, start, startP, &isCopy, "H5Sselect_intersect_block: start not pinned"); + + if (NULL == (strt = (hsize_t *)HDmalloc((size_t)start_rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_intersect_block: failed to allocate start buffer"); + } + + if (NULL == end) { + endP = NULL; + nd = (hsize_t *)endP; + } + else { + if ((end_rank = ENVPTR->GetArrayLength(ENVONLY, end)) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Sselect_intersect_block: end array length < 0"); + } + + if (end_rank != rank) + H5_BAD_ARGUMENT_ERROR(ENVONLY, + "H5Sselect_intersect_block: end rank doesn't match dataspace rank!"); + + PIN_LONG_ARRAY(ENVONLY, end, endP, &isCopy, "H5Sselect_intersect_block: end not pinned"); + + if (NULL == (nd = (hsize_t *)HDmalloc((size_t)end_rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Sselect_intersect_block: failed to allocate end buffer"); + } + + if ((bval = H5Sselect_intersect_block(space_id, (hsize_t *)strt, (hsize_t *)nd)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + bval = (bval > 0) ? JNI_TRUE : JNI_FALSE; + + for (i = 0; i < start_rank; i++) { + startP[i] = (jlong)strt[i]; + endP[i] = (jlong)nd[i]; + } /* end for */ + +done: + if (strt) + HDfree(strt); + if (startP) + UNPIN_LONG_ARRAY(ENVONLY, start, startP, (bval < 0) ? JNI_ABORT : 0); + if (nd) + HDfree(nd); + if (endP) + UNPIN_LONG_ARRAY(ENVONLY, end, endP, (bval < 0) ? JNI_ABORT : 0); + + return (jboolean)bval; +} /* end Java_hdf_hdf5lib_H5_H5Sselect_1intersect_1block */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Sselect_project_intersection + * Signature: (JJJ)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5Sselect_1project_1intersection(JNIEnv *env, jclass clss, jlong src_space_id, + jlong dst_space_id, jlong src_intersect_space_id) +{ + hid_t sid = H5I_INVALID_HID; + + UNUSED(clss); + + if ((sid = H5Sselect_project_intersection(src_space_id, dst_space_id, src_intersect_space_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + +done: + + return (jlong)sid; +} /* end Java_hdf_hdf5lib_H5_H5Sselect_1project_1intersection */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Scombine_hyperslab + * Signature: (JI[J[J[J[J)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5Scombine_1hyperslab(JNIEnv *env, jclass clss, jlong space_id, jint op, jlongArray start, + jlongArray stride, jlongArray count, jlongArray block) +{ + jboolean isCopy; + hsize_t *strt = NULL, *strd = NULL, *cnt = NULL, *blk = NULL; + hsize_t *lp = NULL; + jlong * startP = NULL, *strideP = NULL, *countP = NULL, *blockP = NULL; + jlong * jlp = NULL; + jsize start_rank, stride_rank, count_rank, block_rank; + int i; + hid_t sid = H5I_INVALID_HID; + + UNUSED(clss); + + if (NULL == start) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: start is NULL"); + if (NULL == count) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: count is NULL"); + + if ((start_rank = ENVPTR->GetArrayLength(ENVONLY, start)) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: start array length < 0"); + } + if ((count_rank = ENVPTR->GetArrayLength(ENVONLY, count)) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: count array length < 0"); + } + + if (start_rank != count_rank) + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: count and start have different rank!"); + + PIN_LONG_ARRAY(ENVONLY, start, startP, &isCopy, "H5Scombine_hyperslab: start not pinned"); + + if (NULL == (strt = lp = (hsize_t *)HDmalloc((size_t)start_rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Scombine_hyperslab: failed to allocate start buffer"); + + jlp = (jlong *)startP; + for (i = 0; i < start_rank; i++) { + *lp = (hsize_t)*jlp; + lp++; + jlp++; + } /* end if */ + + PIN_LONG_ARRAY(ENVONLY, count, countP, &isCopy, "H5Scombine_hyperslab: count not pinned"); + + if (NULL == (cnt = lp = (hsize_t *)HDmalloc((size_t)count_rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Scombine_hyperslab: failed to allocate count buffer"); + + jlp = (jlong *)countP; + for (i = 0; i < count_rank; i++) { + *lp = (hsize_t)*jlp; + lp++; + jlp++; + } /* end if */ + + if (NULL == stride) { + strideP = NULL; + strd = (hsize_t *)strideP; + } + else { + if ((stride_rank = ENVPTR->GetArrayLength(ENVONLY, stride)) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: stride array length < 0"); + } + + if (stride_rank != start_rank) + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: stride and start have different rank!"); + + PIN_LONG_ARRAY(ENVONLY, stride, strideP, &isCopy, "H5Scombine_hyperslab: stride not pinned"); + + if (NULL == (strd = lp = (hsize_t *)HDmalloc((size_t)stride_rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Scombine_hyperslab: failed to allocate stride buffer"); + + jlp = (jlong *)strideP; + for (i = 0; i < stride_rank; i++) { + *lp = (hsize_t)*jlp; + lp++; + jlp++; + } /* end if */ + } + + if (NULL == block) { + blockP = NULL; + blk = (hsize_t *)blockP; + } + else { + if ((block_rank = ENVPTR->GetArrayLength(ENVONLY, block)) < 0) { + CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: block array length < 0"); + } + + if (block_rank != start_rank) + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Scombine_hyperslab: block and start have different rank!"); + + PIN_LONG_ARRAY(ENVONLY, block, blockP, &isCopy, "H5Scombine_hyperslab: block not pinned"); + + if (NULL == (blk = lp = (hsize_t *)HDmalloc((size_t)block_rank * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Scombine_hyperslab: failed to allocate block buffer"); + + jlp = (jlong *)blockP; + for (i = 0; i < block_rank; i++) { + *lp = (hsize_t)*jlp; + lp++; + jlp++; + } /* end for */ + } + + if ((sid = H5Scombine_hyperslab(space_id, (H5S_seloper_t)op, (const hsize_t *)strt, (const hsize_t *)strd, + (const hsize_t *)cnt, (const hsize_t *)blk)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + +done: + if (blk) + HDfree(blk); + if (blockP) + UNPIN_LONG_ARRAY(ENVONLY, block, blockP, JNI_ABORT); + if (strd) + HDfree(strd); + if (strideP) + UNPIN_LONG_ARRAY(ENVONLY, stride, strideP, JNI_ABORT); + if (cnt) + HDfree(cnt); + if (countP) + UNPIN_LONG_ARRAY(ENVONLY, count, countP, JNI_ABORT); + if (strt) + HDfree(strt); + if (startP) + UNPIN_LONG_ARRAY(ENVONLY, start, startP, JNI_ABORT); + + return (jlong)sid; +} /* end Java_hdf_hdf5lib_H5_H5Sselect_1hyperslab */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Smodify_select + * Signature: (JIJ)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Smodify_1select(JNIEnv *env, jclass clss, jlong space1_id, jint op, jlong space2_id) +{ + herr_t status = FAIL; + + UNUSED(clss); + + if ((status = H5Smodify_select((hid_t)space1_id, (H5S_seloper_t)op, (hid_t)space2_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + +done: + return; +} /* end Java_hdf_hdf5lib_H5_H5Smodify_1select */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Scombine_select + * Signature: (JIJ)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5Scombine_1select(JNIEnv *env, jclass clss, jlong space1_id, jint op, jlong space2_id) +{ + hid_t sid = H5I_INVALID_HID; + + UNUSED(clss); + + if ((sid = H5Scombine_select((hid_t)space1_id, (H5S_seloper_t)op, (hid_t)space2_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + +done: + + return (jlong)sid; +} /* end Java_hdf_hdf5lib_H5_H5Scombine_1select */ + #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ diff --git a/java/src/jni/h5sImp.h b/java/src/jni/h5sImp.h index 141e504..a758d5a 100644 --- a/java/src/jni/h5sImp.h +++ b/java/src/jni/h5sImp.h @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -14,8 +13,8 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5S */ -#ifndef _Included_hdf_hdf5lib_H5_H5S -#define _Included_hdf_hdf5lib_H5_H5S +#ifndef Included_hdf_hdf5lib_H5_H5S +#define Included_hdf_hdf5lib_H5_H5S #ifdef __cplusplus extern "C" { @@ -26,32 +25,28 @@ extern "C" { * Method: _H5Screate * Signature: (I)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Screate -(JNIEnv *, jclass, jint); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Screate(JNIEnv *, jclass, jint); /* * Class: hdf_hdf5lib_H5 * Method: _H5Screate_simple * Signature: (I[J[J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Screate_1simple -(JNIEnv *, jclass, jint, jlongArray, jlongArray); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Screate_1simple(JNIEnv *, jclass, jint, jlongArray, + jlongArray); /* * Class: hdf_hdf5lib_H5 * Method: _H5Scopy * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Scopy -(JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Scopy(JNIEnv *, jclass, jlong); #ifdef notdef -// 10/28/99 -- added code to copy the array -- this is not used, -// but serves as a reminder in case we try to implement this in -// the future.... +/* 10/28/99 -- added code to copy the array -- this is not used, + * but serves as a reminder in case we try to implement this in + * the future.... + */ /* * Note: the argument coord is actually long coord[][], which has been * flattened by the caller. @@ -62,9 +57,8 @@ Java_hdf_hdf5lib_H5__1H5Scopy * Method: H5Sselect_elements * Signature: (JII[J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sselect_1elements -(JNIEnv *, jclass, jlong, jint, jint, jlongArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1elements(JNIEnv *, jclass, jlong, jint, jint, + jlongArray); #endif /* @@ -72,245 +66,259 @@ Java_hdf_hdf5lib_H5_H5Sselect_1elements * Method: H5Sselect_elements * Signature: (JII[B)I */ -JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1elements -(JNIEnv *, jclass, jlong, jint, jint, jbyteArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1elements(JNIEnv *, jclass, jlong, jint, jint, + jbyteArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Sselect_all * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sselect_1all -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1all(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Sselect_none * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sselect_1none -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1none(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Sselect_valid * Signature: (J)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Sselect_1valid -(JNIEnv *, jclass, jlong); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1valid(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Sget_simple_extent_npoints * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1npoints -(JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1npoints(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Sget_select_npoints * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Sget_1select_1npoints -(JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Sget_1select_1npoints(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Sget_select_type * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sget_1select_1type -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sget_1select_1type(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Sget_simple_extent_ndims * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1ndims -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1ndims(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Sget_simple_extent_dims * Signature: (J[J[J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1dims -(JNIEnv *, jclass, jlong, jlongArray, jlongArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1dims(JNIEnv *, jclass, jlong, jlongArray, + jlongArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Sget_simple_extent_type * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1type -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sget_1simple_1extent_1type(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Sset_extent_simple * Signature: (JI[J[J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sset_1extent_1simple -(JNIEnv *, jclass, jlong, jint, jlongArray, jlongArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sset_1extent_1simple(JNIEnv *, jclass, jlong, jint, jlongArray, + jlongArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Sis_simple * Signature: (J)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Sis_1simple -(JNIEnv *, jclass, jlong); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Sis_1simple(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Soffset_simple * Signature: (J[B)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Soffset_1simple -(JNIEnv *, jclass, jlong, jbyteArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Soffset_1simple(JNIEnv *, jclass, jlong, jbyteArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Sextent_copy * Signature: (JJ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sextent_1copy -(JNIEnv *, jclass, jlong, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sextent_1copy(JNIEnv *, jclass, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Sextent_equal * Signature: (JJ)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Sextent_1equal - (JNIEnv *, jclass, jlong, jlong); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Sextent_1equal(JNIEnv *, jclass, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Sset_extent_none * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sset_1extent_1none -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sset_1extent_1none(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Sselect_hyperslab * Signature: (JI[J[J[J[J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sselect_1hyperslab -(JNIEnv *, jclass, jlong, jint, jlongArray, jlongArray, jlongArray, jlongArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1hyperslab(JNIEnv *, jclass, jlong, jint, jlongArray, + jlongArray, jlongArray, jlongArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Sclose * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5__1H5Sclose -(JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5__1H5Sclose(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Sget_select_hyper_nblocks * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Sget_1select_1hyper_1nblocks -(JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Sget_1select_1hyper_1nblocks(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Sget_select_elem_npoints * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Sget_1select_1elem_1npoints -(JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Sget_1select_1elem_1npoints(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Sget_select_hyper_blocklist * Signature: (JJJ[J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sget_1select_1hyper_1blocklist -(JNIEnv *, jclass, jlong, jlong, jlong, jlongArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sget_1select_1hyper_1blocklist(JNIEnv *, jclass, jlong, jlong, + jlong, jlongArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Sget_select_elem_pointlist * Signature: (JJJ[J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sget_1select_1elem_1pointlist -(JNIEnv *, jclass, jlong, jlong, jlong, jlongArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sget_1select_1elem_1pointlist(JNIEnv *, jclass, jlong, jlong, + jlong, jlongArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Sget_select_bounds * Signature: (J[J[J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Sget_1select_1bounds -(JNIEnv *, jclass, jlong, jlongArray, jlongArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Sget_1select_1bounds(JNIEnv *, jclass, jlong, jlongArray, + jlongArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Sencode * Signature: (J)[B */ -JNIEXPORT jbyteArray JNICALL -Java_hdf_hdf5lib_H5_H5Sencode - (JNIEnv *, jclass, jlong); +JNIEXPORT jbyteArray JNICALL Java_hdf_hdf5lib_H5_H5Sencode(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Sdecode * Signature: ([B)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Sdecode - (JNIEnv *, jclass, jbyteArray); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Sdecode(JNIEnv *, jclass, jbyteArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Sis_regular_hyperslab * Signature: (J)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Sis_1regular_1hyperslab - (JNIEnv *, jclass, jlong); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Sis_1regular_1hyperslab(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Sget_regular_hyperslab * Signature: (J[J[J[J[J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab -(JNIEnv *, jclass, jlong, jlongArray, jlongArray, jlongArray, jlongArray); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Sget_1regular_1hyperslab(JNIEnv *, jclass, jlong, jlongArray, + jlongArray, jlongArray, jlongArray); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Sselect_copy + * Signature: (JJ)V + */ +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1copy(JNIEnv *, jclass, jlong, jlong); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Sselect_shape_same + * Signature: (JJ)Z + */ +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1shape_1same(JNIEnv *, jclass, jlong, jlong); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Sselect_adjust + * Signature: (J[J)V + */ +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1adjust(JNIEnv *, jclass, jlong, jlongArray); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Sselect_intersect_block + * Signature: (J[J[J)Z + */ +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1intersect_1block(JNIEnv *, jclass, jlong, + jlongArray, jlongArray); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Sselect_project_intersection + * Signature: (JJJ)J + */ +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Sselect_1project_1intersection(JNIEnv *, jclass, jlong, jlong, + jlong); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Scombine_hyperslab + * Signature: (JI[J[J[J[J)J + */ +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Scombine_1hyperslab(JNIEnv *, jclass, jlong, jint, jlongArray, + jlongArray, jlongArray, jlongArray); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Smodify_select + * Signature: (JIJ)V + */ +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Smodify_1select(JNIEnv *, jclass, jlong, jint, jlong); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Scombine_select + * Signature: (JIJ)J + */ +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Scombine_1select(JNIEnv *, jclass, jlong, jint, jlong); #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5S */ +#endif /* Included_hdf_hdf5lib_H5_H5S */ diff --git a/java/src/jni/h5tImp.c b/java/src/jni/h5tImp.c index 460f12e..8cd1afb 100644 --- a/java/src/jni/h5tImp.c +++ b/java/src/jni/h5tImp.c @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -40,11 +40,10 @@ extern "C" { * Signature: (JLjava/lang/String;J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Topen2 - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_plist) +Java_hdf_hdf5lib_H5__1H5Topen2(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong access_plist) { const char *datatypeName = NULL; - hid_t status = H5I_INVALID_HID; + hid_t status = H5I_INVALID_HID; UNUSED(clss); @@ -69,8 +68,7 @@ done: * Signature: (J)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Tcommitted - (JNIEnv *env, jclass clss, jlong type_id) +Java_hdf_hdf5lib_H5_H5Tcommitted(JNIEnv *env, jclass clss, jlong type_id) { htri_t bval = JNI_FALSE; @@ -91,14 +89,13 @@ done: * Signature: (IJ)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Tcreate - (JNIEnv *env, jclass clss, jint dclass, jlong size) +Java_hdf_hdf5lib_H5__1H5Tcreate(JNIEnv *env, jclass clss, jint dclass, jlong size) { hid_t retVal = H5I_INVALID_HID; UNUSED(clss); - if ((retVal = H5Tcreate((H5T_class_t )dclass, (size_t)size)) < 0) + if ((retVal = H5Tcreate((H5T_class_t)dclass, (size_t)size)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -111,8 +108,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Tcopy - (JNIEnv *env, jclass clss, jlong type_id) +Java_hdf_hdf5lib_H5__1H5Tcopy(JNIEnv *env, jclass clss, jlong type_id) { hid_t retVal = H5I_INVALID_HID; @@ -131,8 +127,7 @@ done: * Signature: (JJ)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Tequal - (JNIEnv *env, jclass clss, jlong type_id1, jlong type_id2) +Java_hdf_hdf5lib_H5_H5Tequal(JNIEnv *env, jclass clss, jlong type_id1, jlong type_id2) { htri_t bval = JNI_FALSE; @@ -153,8 +148,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tlock - (JNIEnv *env, jclass clss, jlong type_id) +Java_hdf_hdf5lib_H5_H5Tlock(JNIEnv *env, jclass clss, jlong type_id) { herr_t retVal = FAIL; @@ -173,8 +167,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1class - (JNIEnv *env, jclass clss, jlong type_id) +Java_hdf_hdf5lib_H5_H5Tget_1class(JNIEnv *env, jclass clss, jlong type_id) { H5T_class_t retVal = H5T_NO_CLASS; @@ -193,8 +186,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1size - (JNIEnv *env, jclass clss, jlong type_id) +Java_hdf_hdf5lib_H5_H5Tget_1size(JNIEnv *env, jclass clss, jlong type_id) { size_t retVal = 0; @@ -213,10 +205,9 @@ done: * Signature: (JJ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tset_1size - (JNIEnv *env, jclass clss, jlong type_id, jlong size) +Java_hdf_hdf5lib_H5_H5Tset_1size(JNIEnv *env, jclass clss, jlong type_id, jlong size) { - size_t tsize = (size_t)size; + size_t tsize = (size_t)size; herr_t retVal = FAIL; UNUSED(clss); @@ -234,8 +225,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1order - (JNIEnv *env, jclass clss, jlong type_id) +Java_hdf_hdf5lib_H5_H5Tget_1order(JNIEnv *env, jclass clss, jlong type_id) { H5T_order_t retVal = H5T_ORDER_ERROR; @@ -254,8 +244,7 @@ done: * Signature: (JI)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tset_1order - (JNIEnv *env, jclass clss, jlong type_id, jint order) +Java_hdf_hdf5lib_H5_H5Tset_1order(JNIEnv *env, jclass clss, jlong type_id, jint order) { herr_t retVal = FAIL; @@ -274,8 +263,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1precision - (JNIEnv *env, jclass clss, jlong type_id) +Java_hdf_hdf5lib_H5_H5Tget_1precision(JNIEnv *env, jclass clss, jlong type_id) { size_t retVal = 0; @@ -294,8 +282,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1precision_1long - (JNIEnv *env, jclass clss, jlong type_id) +Java_hdf_hdf5lib_H5_H5Tget_1precision_1long(JNIEnv *env, jclass clss, jlong type_id) { size_t retVal = 0; @@ -314,8 +301,7 @@ done: * Signature: (JJ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tset_1precision - (JNIEnv *env, jclass clss, jlong type_id, jlong precision) +Java_hdf_hdf5lib_H5_H5Tset_1precision(JNIEnv *env, jclass clss, jlong type_id, jlong precision) { herr_t retVal = FAIL; @@ -334,8 +320,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1offset - (JNIEnv *env, jclass clss, jlong type_id) +Java_hdf_hdf5lib_H5_H5Tget_1offset(JNIEnv *env, jclass clss, jlong type_id) { int retVal = -1; @@ -354,8 +339,7 @@ done: * Signature: (JJ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tset_1offset - (JNIEnv *env, jclass clss, jlong type_id, jlong offset) +Java_hdf_hdf5lib_H5_H5Tset_1offset(JNIEnv *env, jclass clss, jlong type_id, jlong offset) { herr_t retVal = FAIL; @@ -374,12 +358,11 @@ done: * Signature: (J[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1pad - (JNIEnv *env, jclass clss, jlong type_id, jintArray pad) +Java_hdf_hdf5lib_H5_H5Tget_1pad(JNIEnv *env, jclass clss, jlong type_id, jintArray pad) { - jboolean isCopy; - jint *P = NULL; - herr_t status = FAIL; + jboolean isCopy; + jint * P = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -404,8 +387,7 @@ done: * Signature: (JII)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tset_1pad - (JNIEnv *env, jclass clss, jlong type_id, jint lsb, jint msb) +Java_hdf_hdf5lib_H5_H5Tset_1pad(JNIEnv *env, jclass clss, jlong type_id, jint lsb, jint msb) { herr_t retVal = FAIL; @@ -424,8 +406,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1sign - (JNIEnv *env, jclass clss, jlong type_id) +Java_hdf_hdf5lib_H5_H5Tget_1sign(JNIEnv *env, jclass clss, jlong type_id) { H5T_sign_t retVal = H5T_SGN_ERROR; @@ -444,8 +425,7 @@ done: * Signature: (JI)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tset_1sign - (JNIEnv *env, jclass clss, jlong type_id, jint sign) +Java_hdf_hdf5lib_H5_H5Tset_1sign(JNIEnv *env, jclass clss, jlong type_id, jint sign) { herr_t retVal = FAIL; @@ -464,13 +444,12 @@ done: * Signature: (J[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1fields_1int - (JNIEnv *env, jclass clss, jlong type_id, jintArray fields) +Java_hdf_hdf5lib_H5_H5Tget_1fields_1int(JNIEnv *env, jclass clss, jlong type_id, jintArray fields) { - jboolean isCopy; - jsize arrLen; - jint *P = NULL; - herr_t status = FAIL; + jboolean isCopy; + jsize arrLen; + jint * P = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -486,7 +465,8 @@ Java_hdf_hdf5lib_H5_H5Tget_1fields_1int PIN_INT_ARRAY(ENVONLY, fields, P, &isCopy, "H5Tget_fields_int: fields not pinned"); - if ((status = H5Tget_fields((hid_t)type_id, (size_t *)&(P[0]), (size_t *)&(P[1]), (size_t *)&(P[2]), (size_t *)&(P[3]), (size_t *)&(P[4]))) < 0) + if ((status = H5Tget_fields((hid_t)type_id, (size_t *)&(P[0]), (size_t *)&(P[1]), (size_t *)&(P[2]), + (size_t *)&(P[3]), (size_t *)&(P[4]))) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -502,13 +482,12 @@ done: * Signature: (J[J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1fields - (JNIEnv *env, jclass clss, jlong type_id, jlongArray fields) +Java_hdf_hdf5lib_H5_H5Tget_1fields(JNIEnv *env, jclass clss, jlong type_id, jlongArray fields) { - jboolean isCopy; - jlong *fieldsArray = NULL; - jsize arrLen; - herr_t status = FAIL; + jboolean isCopy; + jlong * fieldsArray = NULL; + jsize arrLen; + herr_t status = FAIL; UNUSED(clss); @@ -525,21 +504,21 @@ Java_hdf_hdf5lib_H5_H5Tget_1fields PIN_LONG_ARRAY(ENVONLY, fields, fieldsArray, &isCopy, "H5Tget_fields: fields not pinned"); { /* Direct cast (size_t *)variable fails on 32-bit environment */ - size_t spos_t = 0; - size_t epos_t = 0; - size_t esize_t = 0; - size_t mpos_t = 0; - size_t msize_t = 0; + size_t spos_t = 0; + size_t epos_t = 0; + size_t esize_t = 0; + size_t mpos_t = 0; + size_t msize_t = 0; long long fields_temp = *(&fieldsArray[0]); - spos_t = (size_t)fields_temp; - fields_temp = *(&fieldsArray[1]); - epos_t = (size_t)fields_temp; - fields_temp = *(&fieldsArray[2]); - esize_t = (size_t)fields_temp; - fields_temp = *(&fieldsArray[3]); - mpos_t = (size_t)fields_temp; - fields_temp = *(&fieldsArray[4]); - msize_t = (size_t)fields_temp; + spos_t = (size_t)fields_temp; + fields_temp = *(&fieldsArray[1]); + epos_t = (size_t)fields_temp; + fields_temp = *(&fieldsArray[2]); + esize_t = (size_t)fields_temp; + fields_temp = *(&fieldsArray[3]); + mpos_t = (size_t)fields_temp; + fields_temp = *(&fieldsArray[4]); + msize_t = (size_t)fields_temp; if ((status = H5Tget_fields((hid_t)type_id, &spos_t, &epos_t, &esize_t, &mpos_t, &msize_t)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -564,13 +543,13 @@ done: * Signature: (JJJJJJ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Tset_1fields - (JNIEnv *env, jclass clss, jlong type_id, jlong spos, jlong epos, - jlong esize, jlong mpos, jlong msize) +Java_hdf_hdf5lib_H5_H5Tset_1fields(JNIEnv *env, jclass clss, jlong type_id, jlong spos, jlong epos, + jlong esize, jlong mpos, jlong msize) { UNUSED(clss); - if (H5Tset_fields((hid_t)type_id, (size_t)spos, (size_t)epos, (size_t)esize, (size_t)mpos, (size_t)msize) < 0) + if (H5Tset_fields((hid_t)type_id, (size_t)spos, (size_t)epos, (size_t)esize, (size_t)mpos, + (size_t)msize) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -583,14 +562,13 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1ebias - (JNIEnv *env, jclass clss, jlong type_id) +Java_hdf_hdf5lib_H5_H5Tget_1ebias(JNIEnv *env, jclass clss, jlong type_id) { size_t retVal = 0; UNUSED(clss); - if (!(retVal = H5Tget_ebias((hid_t)type_id))) + if (!(retVal = H5Tget_ebias((hid_t)type_id))) H5_LIBRARY_ERROR(ENVONLY); done: @@ -603,8 +581,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1ebias_1long - (JNIEnv *env, jclass clss, jlong type_id) +Java_hdf_hdf5lib_H5_H5Tget_1ebias_1long(JNIEnv *env, jclass clss, jlong type_id) { size_t retVal = 0; @@ -623,8 +600,7 @@ done: * Signature: (JJ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tset_1ebias - (JNIEnv *env, jclass clss, jlong type_id, jlong ebias) +Java_hdf_hdf5lib_H5_H5Tset_1ebias(JNIEnv *env, jclass clss, jlong type_id, jlong ebias) { herr_t retVal = FAIL; @@ -643,8 +619,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1norm - (JNIEnv *env, jclass clss, jlong type_id) +Java_hdf_hdf5lib_H5_H5Tget_1norm(JNIEnv *env, jclass clss, jlong type_id) { H5T_norm_t retVal = H5T_NORM_ERROR; @@ -663,14 +638,13 @@ done: * Signature: (JI)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tset_1norm - (JNIEnv *env, jclass clss, jlong type_id, jint norm) +Java_hdf_hdf5lib_H5_H5Tset_1norm(JNIEnv *env, jclass clss, jlong type_id, jint norm) { herr_t retVal = FAIL; UNUSED(clss); - if ((retVal = H5Tset_norm((hid_t)type_id, (H5T_norm_t )norm)) < 0) + if ((retVal = H5Tset_norm((hid_t)type_id, (H5T_norm_t)norm)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -683,8 +657,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1inpad - (JNIEnv *env, jclass clss, jlong type_id) +Java_hdf_hdf5lib_H5_H5Tget_1inpad(JNIEnv *env, jclass clss, jlong type_id) { H5T_pad_t retVal = H5T_PAD_ERROR; @@ -703,14 +676,13 @@ done: * Signature: (JI)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tset_1inpad - (JNIEnv *env, jclass clss, jlong type_id, jint inpad) +Java_hdf_hdf5lib_H5_H5Tset_1inpad(JNIEnv *env, jclass clss, jlong type_id, jint inpad) { herr_t retVal = FAIL; UNUSED(clss); - if ((retVal = H5Tset_inpad((hid_t)type_id, (H5T_pad_t) inpad)) < 0) + if ((retVal = H5Tset_inpad((hid_t)type_id, (H5T_pad_t)inpad)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -723,8 +695,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1cset - (JNIEnv *env, jclass clss, jlong type_id) +Java_hdf_hdf5lib_H5_H5Tget_1cset(JNIEnv *env, jclass clss, jlong type_id) { H5T_cset_t retVal = H5T_CSET_ERROR; @@ -743,8 +714,7 @@ done: * Signature: (JI)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tset_1cset - (JNIEnv *env, jclass clss, jlong type_id, jint cset) +Java_hdf_hdf5lib_H5_H5Tset_1cset(JNIEnv *env, jclass clss, jlong type_id, jint cset) { herr_t retVal = FAIL; @@ -763,8 +733,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1strpad - (JNIEnv *env, jclass clss, jlong type_id) +Java_hdf_hdf5lib_H5_H5Tget_1strpad(JNIEnv *env, jclass clss, jlong type_id) { H5T_str_t retVal = H5T_STR_ERROR; @@ -783,8 +752,7 @@ done: * Signature: (JI)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tset_1strpad - (JNIEnv *env, jclass clss, jlong type_id, jint strpad) +Java_hdf_hdf5lib_H5_H5Tset_1strpad(JNIEnv *env, jclass clss, jlong type_id, jint strpad) { herr_t retVal = FAIL; @@ -803,8 +771,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1nmembers - (JNIEnv *env, jclass clss, jlong type_id) +Java_hdf_hdf5lib_H5_H5Tget_1nmembers(JNIEnv *env, jclass clss, jlong type_id) { int retVal = -1; @@ -823,11 +790,10 @@ done: * Signature: (JI)Ljava/lang/String; */ JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1member_1name - (JNIEnv *env, jclass clss, jlong type_id, jint field_idx) +Java_hdf_hdf5lib_H5_H5Tget_1member_1name(JNIEnv *env, jclass clss, jlong type_id, jint field_idx) { - char *member_name = NULL; - jstring str = NULL; + char * member_name = NULL; + jstring str = NULL; UNUSED(clss); @@ -850,11 +816,10 @@ done: * Signature: (JLjava/lang/String)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1member_1index - (JNIEnv *env, jclass clss, jlong type_id, jstring field_name) +Java_hdf_hdf5lib_H5_H5Tget_1member_1index(JNIEnv *env, jclass clss, jlong type_id, jstring field_name) { const char *datatypeName = NULL; - int index = -1; + int index = -1; UNUSED(clss); @@ -879,8 +844,7 @@ done: * Signature: (JI)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Tget_1member_1type - (JNIEnv *env, jclass clss, jlong type_id, jint field_idx) +Java_hdf_hdf5lib_H5__1H5Tget_1member_1type(JNIEnv *env, jclass clss, jlong type_id, jint field_idx) { hid_t retVal = H5I_INVALID_HID; @@ -899,8 +863,7 @@ done: * Signature: (JI)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1member_1offset - (JNIEnv *env, jclass clss, jlong type_id, jint memno) +Java_hdf_hdf5lib_H5_H5Tget_1member_1offset(JNIEnv *env, jclass clss, jlong type_id, jint memno) { UNUSED(env); UNUSED(clss); @@ -914,8 +877,7 @@ Java_hdf_hdf5lib_H5_H5Tget_1member_1offset * Signature: (JI)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1member_1class - (JNIEnv *env, jclass clss, jlong type_id, jint memno) +Java_hdf_hdf5lib_H5_H5Tget_1member_1class(JNIEnv *env, jclass clss, jlong type_id, jint memno) { H5T_class_t retVal = H5T_NO_CLASS; @@ -934,12 +896,12 @@ done: * Signature: (JLjava/lang/String;JJ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tinsert - (JNIEnv *env, jclass clss, jlong type_id, jstring name, jlong offset, jlong field_id) +Java_hdf_hdf5lib_H5_H5Tinsert(JNIEnv *env, jclass clss, jlong type_id, jstring name, jlong offset, + jlong field_id) { const char *datatypeName = NULL; - long off = (long)offset; - herr_t status = FAIL; + long off = (long)offset; + herr_t status = FAIL; UNUSED(clss); @@ -964,8 +926,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tpack - (JNIEnv *env, jclass clss, jlong type_id) +Java_hdf_hdf5lib_H5_H5Tpack(JNIEnv *env, jclass clss, jlong type_id) { herr_t retVal = FAIL; @@ -980,12 +941,39 @@ done: /* * Class: hdf_hdf5lib_H5 + * Method: H5Treclaim + * Signature: (JJJ[B)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5Treclaim(JNIEnv *env, jclass clss, jlong type_id, jlong space_id, jlong xfer_plist_id, + jbyteArray buf) +{ + jboolean bufIsCopy; + jbyte * pinBuf = NULL; + herr_t status = FAIL; + + UNUSED(clss); + + if (NULL == buf) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Treclaim: buffer is NULL"); + + PIN_BYTE_ARRAY(ENVONLY, buf, pinBuf, &bufIsCopy, "H5Treclaim: buffer not pinned"); + + if ((status = H5Treclaim((hid_t)type_id, (hid_t)space_id, (hid_t)xfer_plist_id, pinBuf)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + +done: + if (pinBuf) + UNPIN_BYTE_ARRAY(ENVONLY, buf, pinBuf, (status < 0) ? JNI_ABORT : 0); +} /* end Java_hdf_hdf5lib_H5_H5Treclaim */ + +/* + * Class: hdf_hdf5lib_H5 * Method: _H5Tclose * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5__1H5Tclose - (JNIEnv *env, jclass clss, jlong type_id) +Java_hdf_hdf5lib_H5__1H5Tclose(JNIEnv *env, jclass clss, jlong type_id) { herr_t retVal = FAIL; @@ -1004,8 +992,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Tvlen_1create - (JNIEnv *env, jclass clss, jlong base_id) +Java_hdf_hdf5lib_H5__1H5Tvlen_1create(JNIEnv *env, jclass clss, jlong base_id) { hid_t retVal = H5I_INVALID_HID; @@ -1024,8 +1011,7 @@ done: * Signature: (JLjava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tset_1tag - (JNIEnv *env, jclass clss, jlong type, jstring tag) +Java_hdf_hdf5lib_H5_H5Tset_1tag(JNIEnv *env, jclass clss, jlong type, jstring tag) { const char *tagBuf = NULL; herr_t status = FAIL; @@ -1053,11 +1039,10 @@ done: * Signature: (J)Ljava/lang/String; */ JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1tag - (JNIEnv *env, jclass clss, jlong type) +Java_hdf_hdf5lib_H5_H5Tget_1tag(JNIEnv *env, jclass clss, jlong type) { - jstring str = NULL; - char *tag = NULL; + jstring str = NULL; + char * tag = NULL; UNUSED(clss); @@ -1080,8 +1065,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Tget_1super - (JNIEnv *env, jclass clss, jlong type_id) +Java_hdf_hdf5lib_H5__1H5Tget_1super(JNIEnv *env, jclass clss, jlong type_id) { hid_t retVal = H5I_INVALID_HID; @@ -1100,8 +1084,7 @@ done: * Signature: (J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Tenum_1create - (JNIEnv *env, jclass clss, jlong base_id) +Java_hdf_hdf5lib_H5__1H5Tenum_1create(JNIEnv *env, jclass clss, jlong base_id) { hid_t retVal = H5I_INVALID_HID; @@ -1120,12 +1103,12 @@ done: * Signature: (JLjava/lang/String;[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tenum_1insert_1int - (JNIEnv *env, jclass clss, jlong type_id, jstring name, jintArray value) +Java_hdf_hdf5lib_H5_H5Tenum_1insert_1int(JNIEnv *env, jclass clss, jlong type_id, jstring name, + jintArray value) { const char *memberName = NULL; jboolean isCopy; - jint *intBuf = NULL; + jint * intBuf = NULL; herr_t status = FAIL; UNUSED(clss); @@ -1157,13 +1140,12 @@ done: * Signature: (JLjava/lang/String;[B)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Tenum_1insert - (JNIEnv *env, jclass clss, jlong type_id, jstring name, jbyteArray value) +Java_hdf_hdf5lib_H5_H5Tenum_1insert(JNIEnv *env, jclass clss, jlong type_id, jstring name, jbyteArray value) { const char *memberName = NULL; jboolean isCopy; - jbyte *memberBuf = NULL; - herr_t status = FAIL; + jbyte * memberBuf = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -1192,15 +1174,14 @@ done: * Signature: (J[I[Ljava/lang/String;I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tenum_1nameof_1int - (JNIEnv *env, jclass clss, jlong type_id, jintArray value, jobjectArray name, - jint size) +Java_hdf_hdf5lib_H5_H5Tenum_1nameof_1int(JNIEnv *env, jclass clss, jlong type_id, jintArray value, + jobjectArray name, jint size) { - jboolean isCopy; - jstring str; - jint *intP = NULL; - char *nameP = NULL; - herr_t status = FAIL; + jboolean isCopy; + jstring str; + jint * intP = NULL; + char * nameP = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -1209,8 +1190,8 @@ Java_hdf_hdf5lib_H5_H5Tenum_1nameof_1int if (size <= 0) H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tenum_nameof_int: name size < 0"); - if (NULL == (nameP = (char *) HDmalloc(sizeof(char) * (size_t)size))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Tenum_nameof_int: failed to allocate name buffer"); + if (NULL == (nameP = (char *)HDmalloc(sizeof(char) * (size_t)size))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Tenum_nameof_int: failed to allocate name buffer"); PIN_INT_ARRAY(ENVONLY, value, intP, &isCopy, "H5Tenum_nameof_int: value not pinned"); @@ -1239,14 +1220,13 @@ done: * Signature: (J[BJ)Ljava/lang/String; */ JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Tenum_1nameof - (JNIEnv *env, jclass clss, jlong type_id, jbyteArray value, jlong size) +Java_hdf_hdf5lib_H5_H5Tenum_1nameof(JNIEnv *env, jclass clss, jlong type_id, jbyteArray value, jlong size) { - jboolean isCopy; - jstring str = NULL; - jbyte *byteP = NULL; - char *nameP = NULL; - herr_t status = FAIL; + jboolean isCopy; + jstring str = NULL; + jbyte * byteP = NULL; + char * nameP = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -1255,8 +1235,8 @@ Java_hdf_hdf5lib_H5_H5Tenum_1nameof if (NULL == value) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Tenum_nameof: value is NULL"); - if (NULL == (nameP = (char *) HDmalloc(sizeof(char) * (size_t)size))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Tenum_nameof: failed to allocate name buffer"); + if (NULL == (nameP = (char *)HDmalloc(sizeof(char) * (size_t)size))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Tenum_nameof: failed to allocate name buffer"); PIN_BYTE_ARRAY(ENVONLY, value, byteP, &isCopy, "H5Tenum_nameof: value not pinned"); @@ -1282,13 +1262,13 @@ done: * Signature: (JLjava/lang/String;[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tenum_1valueof_1int - (JNIEnv *env, jclass clss, jlong type_id, jstring name, jintArray value) +Java_hdf_hdf5lib_H5_H5Tenum_1valueof_1int(JNIEnv *env, jclass clss, jlong type_id, jstring name, + jintArray value) { const char *enumValue = NULL; jboolean isCopy; - jint *enumValueBuf = NULL; - herr_t status = FAIL; + jint * enumValueBuf = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -1319,13 +1299,12 @@ done: * Signature: (JLjava/lang/String;[B)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Tenum_1valueof - (JNIEnv *env, jclass clss, jlong type_id, jstring name, jbyteArray value) +Java_hdf_hdf5lib_H5_H5Tenum_1valueof(JNIEnv *env, jclass clss, jlong type_id, jstring name, jbyteArray value) { const char *enumValue = NULL; jboolean isCopy; - jbyte *enumValueBuf = NULL; - herr_t status = FAIL; + jbyte * enumValueBuf = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -1354,12 +1333,12 @@ done: * Signature: (JI[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1member_1value_1int - (JNIEnv *env, jclass clss, jlong type_id, jint membno, jintArray value) +Java_hdf_hdf5lib_H5_H5Tget_1member_1value_1int(JNIEnv *env, jclass clss, jlong type_id, jint membno, + jintArray value) { - jboolean isCopy; - jint *intP = NULL; - herr_t status = FAIL; + jboolean isCopy; + jint * intP = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -1384,12 +1363,12 @@ done: * Signature: (JI[B)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1member_1value - (JNIEnv *env, jclass clss, jlong type_id, jint membno, jbyteArray value) +Java_hdf_hdf5lib_H5_H5Tget_1member_1value(JNIEnv *env, jclass clss, jlong type_id, jint membno, + jbyteArray value) { - jboolean isCopy; - jbyte *byteP = NULL; - herr_t status = FAIL; + jboolean isCopy; + jbyte * byteP = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -1412,8 +1391,7 @@ done: * Signature: (J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1array_1ndims - (JNIEnv *env, jclass clss, jlong type_id) +Java_hdf_hdf5lib_H5_H5Tget_1array_1ndims(JNIEnv *env, jclass clss, jlong type_id) { int ndims = -1; @@ -1432,15 +1410,15 @@ done: * Signature: (J[I[I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1array_1dims - (JNIEnv *env, jclass clss, jlong type_id, jintArray dims, jintArray perms) +Java_hdf_hdf5lib_H5_H5Tget_1array_1dims(JNIEnv *env, jclass clss, jlong type_id, jintArray dims, + jintArray perms) { - jboolean isCopy; - hsize_t *cdims = NULL; - size_t i; - jsize dlen; - jint *dimsP = NULL; - int ndims = -1; + jboolean isCopy; + hsize_t *cdims = NULL; + size_t i; + jsize dlen; + jint * dimsP = NULL; + int ndims = -1; UNUSED(clss); UNUSED(perms); @@ -1455,14 +1433,14 @@ Java_hdf_hdf5lib_H5_H5Tget_1array_1dims H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tget_array_dims: dims array length < 0"); } - if (NULL == (cdims = (hsize_t *) HDmalloc((size_t)dlen * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Tget_array_dims: failed to allocate dimension buffer"); + if (NULL == (cdims = (hsize_t *)HDmalloc((size_t)dlen * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Tget_array_dims: failed to allocate dimension buffer"); if ((ndims = H5Tget_array_dims2((hid_t)type_id, cdims)) < 0) H5_LIBRARY_ERROR(ENVONLY); - for (i = 0; i < (size_t) dlen; i++) { - dimsP[i] = (jint) cdims[i]; + for (i = 0; i < (size_t)dlen; i++) { + dimsP[i] = (jint)cdims[i]; } /* end for */ done: @@ -1480,8 +1458,7 @@ done: * Signature: (J)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Tis_1variable_1str - (JNIEnv *env, jclass clss, jlong type_id) +Java_hdf_hdf5lib_H5_H5Tis_1variable_1str(JNIEnv *env, jclass clss, jlong type_id) { htri_t bval = JNI_FALSE; @@ -1502,8 +1479,7 @@ done: * Signature: (JI)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Tget_1native_1type - (JNIEnv *env, jclass clss, jlong type_id, jint direction) +Java_hdf_hdf5lib_H5__1H5Tget_1native_1type(JNIEnv *env, jclass clss, jlong type_id, jint direction) { hid_t native_tid = H5I_INVALID_HID; @@ -1522,8 +1498,7 @@ done: * Signature: (JI)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Tdetect_1class - (JNIEnv *env, jclass clss, jlong type_id, jint dtype_class) +Java_hdf_hdf5lib_H5_H5Tdetect_1class(JNIEnv *env, jclass clss, jlong type_id, jint dtype_class) { htri_t bval = JNI_FALSE; @@ -1544,12 +1519,11 @@ done: * Signature: (JLjava/lang/String;JJJJ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Tcommit - (JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong type, - jlong link_plist_id, jlong create_plist_id, jlong access_plist_id) +Java_hdf_hdf5lib_H5_H5Tcommit(JNIEnv *env, jclass clss, jlong loc_id, jstring name, jlong type, + jlong link_plist_id, jlong create_plist_id, jlong access_plist_id) { const char *datatypeName = NULL; - herr_t status = FAIL; + herr_t status = FAIL; UNUSED(clss); @@ -1558,7 +1532,8 @@ Java_hdf_hdf5lib_H5_H5Tcommit PIN_JAVA_STRING(ENVONLY, name, datatypeName, NULL, "H5Tcommit: datatype name not pinned"); - if ((status = H5Tcommit2((hid_t)loc_id, datatypeName, (hid_t)type, (hid_t)link_plist_id, (hid_t)create_plist_id, (hid_t)access_plist_id)) < 0) + if ((status = H5Tcommit2((hid_t)loc_id, datatypeName, (hid_t)type, (hid_t)link_plist_id, + (hid_t)create_plist_id, (hid_t)access_plist_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -1572,15 +1547,14 @@ done: * Signature: (JI[J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Tarray_1create2 - (JNIEnv *env, jclass clss, jlong base_id, jint rank, jlongArray dims) +Java_hdf_hdf5lib_H5__1H5Tarray_1create2(JNIEnv *env, jclass clss, jlong base_id, jint rank, jlongArray dims) { - jboolean isCopy; - hsize_t *cdims = NULL; - size_t i; - jlong *dimsP = NULL; - jsize dlen; - hid_t retVal = H5I_INVALID_HID; + jboolean isCopy; + hsize_t *cdims = NULL; + size_t i; + jlong * dimsP = NULL; + jsize dlen; + hid_t retVal = H5I_INVALID_HID; UNUSED(clss); @@ -1597,12 +1571,12 @@ Java_hdf_hdf5lib_H5__1H5Tarray_1create2 } if (dlen != rank) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Tarray_create: dimension array length != array rank"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tarray_create: dimension array length != array rank"); - if (NULL == (cdims = (hsize_t *) HDmalloc((size_t)dlen * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Tarray_create: failed to allocate dimension buffer"); + if (NULL == (cdims = (hsize_t *)HDmalloc((size_t)dlen * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Tarray_create: failed to allocate dimension buffer"); - for (i = 0; i < (size_t) dlen; i++) { + for (i = 0; i < (size_t)dlen; i++) { cdims[i] = (hsize_t)dimsP[i]; } /* end for */ @@ -1624,15 +1598,14 @@ done: * Signature: (J[J)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1array_1dims2 - (JNIEnv *env, jclass clss, jlong type_id, jlongArray dims) +Java_hdf_hdf5lib_H5_H5Tget_1array_1dims2(JNIEnv *env, jclass clss, jlong type_id, jlongArray dims) { - jboolean isCopy; - hsize_t *cdims = NULL; - size_t i; - jlong *dimsP = NULL; - jsize dlen; - int ndims = -1; + jboolean isCopy; + hsize_t *cdims = NULL; + size_t i; + jlong * dimsP = NULL; + jsize dlen; + int ndims = -1; UNUSED(clss); @@ -1646,14 +1619,14 @@ Java_hdf_hdf5lib_H5_H5Tget_1array_1dims2 H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5Tarray_get_dims2: dims array length < 0"); } - if (NULL == (cdims = (hsize_t *) HDmalloc((size_t)dlen * sizeof(hsize_t)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Tarray_get_dims2: failed to allocate dimension buffer"); + if (NULL == (cdims = (hsize_t *)HDmalloc((size_t)dlen * sizeof(hsize_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Tarray_get_dims2: failed to allocate dimension buffer"); - if ((ndims = H5Tget_array_dims2((hid_t)type_id, (hsize_t*)cdims)) < 0) + if ((ndims = H5Tget_array_dims2((hid_t)type_id, (hsize_t *)cdims)) < 0) H5_LIBRARY_ERROR(ENVONLY); - for (i = 0; i < (size_t) dlen; i++) { - dimsP[i] = (jlong) cdims[i]; + for (i = 0; i < (size_t)dlen; i++) { + dimsP[i] = (jlong)cdims[i]; } /* end for */ done: @@ -1671,14 +1644,13 @@ done: * Signature: (JJJ[B[BJ)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Tconvert - (JNIEnv *env, jclass clss, jlong src_id, jlong dst_id, jlong nelmts, - jbyteArray buf, jbyteArray background, jlong plist_id) +Java_hdf_hdf5lib_H5_H5Tconvert(JNIEnv *env, jclass clss, jlong src_id, jlong dst_id, jlong nelmts, + jbyteArray buf, jbyteArray background, jlong plist_id) { - jboolean isCopy; - jbyte *bufP = NULL; - jbyte *bgP = NULL; - herr_t status = FAIL; + jboolean isCopy; + jbyte * bufP = NULL; + jbyte * bgP = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -1690,7 +1662,8 @@ Java_hdf_hdf5lib_H5_H5Tconvert if (background) PIN_BYTE_ARRAY(ENVONLY, background, bgP, &isCopy, "H5Tconvert: background buffer not pinned"); - if ((status = H5Tconvert((hid_t)src_id, (hid_t)dst_id, (size_t)nelmts, (void *)bufP, (void *)bgP, (hid_t)plist_id)) < 0) + if ((status = H5Tconvert((hid_t)src_id, (hid_t)dst_id, (size_t)nelmts, (void *)bufP, (void *)bgP, + (hid_t)plist_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -1734,7 +1707,6 @@ done: return; } - #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ diff --git a/java/src/jni/h5tImp.h b/java/src/jni/h5tImp.h index 374d992..e671456 100644 --- a/java/src/jni/h5tImp.h +++ b/java/src/jni/h5tImp.h @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -14,8 +13,8 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5T */ -#ifndef _Included_hdf_hdf5lib_H5_H5T -#define _Included_hdf_hdf5lib_H5_H5T +#ifndef Included_hdf_hdf5lib_H5_H5T +#define Included_hdf_hdf5lib_H5_H5T #ifdef __cplusplus extern "C" { @@ -26,606 +25,484 @@ extern "C" { * Method: _H5Topen2 * Signature: (JLjava/lang/String;J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Topen2 - (JNIEnv *, jclass, jlong, jstring, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Topen2(JNIEnv *, jclass, jlong, jstring, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tcommitted * Signature: (J)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Tcommitted - (JNIEnv *, jclass, jlong); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Tcommitted(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: _H5Tcreate * Signature: (IJ)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Tcreate - (JNIEnv *, jclass, jint, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Tcreate(JNIEnv *, jclass, jint, jlong); /* * Class: hdf_hdf5lib_H5 * Method: _H5Tcopy * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Tcopy - (JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Tcopy(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tequal * Signature: (JJ)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Tequal - (JNIEnv *, jclass, jlong, jlong); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Tequal(JNIEnv *, jclass, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tlock * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tlock - (JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tlock(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_class * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1class - (JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tget_1class(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_size * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1size - (JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Tget_1size(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tset_size * Signature: (JJ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tset_1size - (JNIEnv *, jclass, jlong, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tset_1size(JNIEnv *, jclass, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_order * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1order - (JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tget_1order(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tset_order * Signature: (JI)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tset_1order - (JNIEnv *, jclass, jlong, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tset_1order(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_precision * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1precision - (JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tget_1precision(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_precision_long * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1precision_1long - (JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Tget_1precision_1long(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tset_precision * Signature: (JJ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tset_1precision - (JNIEnv *, jclass, jlong, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tset_1precision(JNIEnv *, jclass, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_offset * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1offset - (JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tget_1offset(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tset_offset * Signature: (JJ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tset_1offset - (JNIEnv *, jclass, jlong, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tset_1offset(JNIEnv *, jclass, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_pad * Signature: (J[I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1pad - (JNIEnv *, jclass, jlong, jintArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tget_1pad(JNIEnv *, jclass, jlong, jintArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Tset_pad * Signature: (JII)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tset_1pad - (JNIEnv *, jclass, jlong, jint, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tset_1pad(JNIEnv *, jclass, jlong, jint, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_sign * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1sign - (JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tget_1sign(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tset_sign * Signature: (JI)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tset_1sign - (JNIEnv *, jclass, jlong, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tset_1sign(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_fields_int * Signature: (J[I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1fields_1int - (JNIEnv *, jclass, jlong, jintArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tget_1fields_1int(JNIEnv *, jclass, jlong, jintArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_fields * Signature: (J[J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1fields - (JNIEnv *, jclass, jlong, jlongArray); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Tget_1fields(JNIEnv *, jclass, jlong, jlongArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Tset_fields * Signature: (JJJJJJ)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Tset_1fields - (JNIEnv *, jclass, jlong, jlong, jlong, jlong, jlong, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Tset_1fields(JNIEnv *, jclass, jlong, jlong, jlong, jlong, jlong, + jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_ebias * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1ebias - (JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tget_1ebias(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_ebias_long * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1ebias_1long - (JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Tget_1ebias_1long(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tset_ebias * Signature: (JJ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tset_1ebias - (JNIEnv *, jclass, jlong, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tset_1ebias(JNIEnv *, jclass, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_norm * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1norm - (JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tget_1norm(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tset_norm * Signature: (JI)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tset_1norm - (JNIEnv *, jclass, jlong, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tset_1norm(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_inpad * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1inpad - (JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tget_1inpad(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tset_inpad * Signature: (JI)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tset_1inpad - (JNIEnv *, jclass, jlong, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tset_1inpad(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_cset * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1cset - (JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tget_1cset(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tset_cset * Signature: (JI)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tset_1cset - (JNIEnv *, jclass, jlong, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tset_1cset(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_strpad * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1strpad - (JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tget_1strpad(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tset_strpad * Signature: (JI)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tset_1strpad - (JNIEnv *, jclass, jlong, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tset_1strpad(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_nmembers * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1nmembers - (JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tget_1nmembers(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_member_name * Signature: (JI)Ljava/lang/String; */ -JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1member_1name - (JNIEnv *, jclass, jlong, jint); +JNIEXPORT jstring JNICALL Java_hdf_hdf5lib_H5_H5Tget_1member_1name(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_member_index * Signature: (JLjava/lang/String)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1member_1index - (JNIEnv *, jclass, jlong, jstring); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tget_1member_1index(JNIEnv *, jclass, jlong, jstring); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_member_type * Signature: (JI)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Tget_1member_1type - (JNIEnv *, jclass, jlong, jint); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Tget_1member_1type(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_member_offset * Signature: (JI)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1member_1offset - (JNIEnv *, jclass, jlong, jint); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5Tget_1member_1offset(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_member_class * Signature: (JI)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1member_1class - (JNIEnv *, jclass, jlong, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tget_1member_1class(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Tinsert * Signature: (JLjava/lang/String;JJ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tinsert - (JNIEnv *, jclass, jlong, jstring, jlong, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tinsert(JNIEnv *, jclass, jlong, jstring, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tpack * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tpack - (JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tpack(JNIEnv *, jclass, jlong); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5Treclaim + * Signature: (JJJ[B)V + */ +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Treclaim(JNIEnv *, jclass, jlong, jlong, jlong, jbyteArray); /* * Class: hdf_hdf5lib_H5 * Method: _H5Tclose * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5__1H5Tclose - (JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5__1H5Tclose(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: _H5Tvlen_create * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Tvlen_1create - (JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Tvlen_1create(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tset_tag * Signature: (JLjava/lang/String;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tset_1tag - (JNIEnv *, jclass, jlong, jstring); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tset_1tag(JNIEnv *, jclass, jlong, jstring); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_tag * Signature: (J)Ljava/lang/String; */ -JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1tag - (JNIEnv *, jclass, jlong); +JNIEXPORT jstring JNICALL Java_hdf_hdf5lib_H5_H5Tget_1tag(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_super * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Tget_1super - (JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Tget_1super(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: _H5Tenum_create * Signature: (J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Tenum_1create - (JNIEnv *, jclass, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Tenum_1create(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tenum_insert_int * Signature: (JLjava/lang/String;[I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tenum_1insert_1int - (JNIEnv *, jclass, jlong, jstring, jintArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tenum_1insert_1int(JNIEnv *, jclass, jlong, jstring, jintArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Tenum_insert * Signature: (JLjava/lang/String;[B)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Tenum_1insert - (JNIEnv *, jclass, jlong, jstring, jbyteArray); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Tenum_1insert(JNIEnv *, jclass, jlong, jstring, jbyteArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Tenum_nameof_int * Signature: (J[I[Ljava/lang/String;I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tenum_1nameof_1int - (JNIEnv *, jclass, jlong, jintArray, jobjectArray, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tenum_1nameof_1int(JNIEnv *, jclass, jlong, jintArray, + jobjectArray, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Tenum_nameof * Signature: (J[BJ)Ljava/lang/String; */ -JNIEXPORT jstring JNICALL -Java_hdf_hdf5lib_H5_H5Tenum_1nameof - (JNIEnv *, jclass, jlong, jbyteArray, jlong); +JNIEXPORT jstring JNICALL Java_hdf_hdf5lib_H5_H5Tenum_1nameof(JNIEnv *, jclass, jlong, jbyteArray, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tenum_valueof_int * Signature: (JLjava/lang/String;[I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tenum_1valueof_1int - (JNIEnv *, jclass, jlong, jstring, jintArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tenum_1valueof_1int(JNIEnv *, jclass, jlong, jstring, jintArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Tenum_valueof * Signature: (JLjava/lang/String;[B)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Tenum_1valueof - (JNIEnv *, jclass, jlong, jstring, jbyteArray); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Tenum_1valueof(JNIEnv *, jclass, jlong, jstring, jbyteArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_member_value_int * Signature: (JI[I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1member_1value_1int - (JNIEnv *, jclass, jlong, jint, jintArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tget_1member_1value_1int(JNIEnv *, jclass, jlong, jint, + jintArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_member_value * Signature: (JI[B)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1member_1value - (JNIEnv *, jclass, jlong, jint, jbyteArray); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Tget_1member_1value(JNIEnv *, jclass, jlong, jint, jbyteArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_array_ndims * Signature: (J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1array_1ndims - (JNIEnv *, jclass, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tget_1array_1ndims(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_array_dims * Signature: (J[I[I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1array_1dims - (JNIEnv *, jclass, jlong, jintArray, jintArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tget_1array_1dims(JNIEnv *, jclass, jlong, jintArray, jintArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Tis_variable_str * Signature: (J)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Tis_1variable_1str - (JNIEnv *, jclass, jlong); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Tis_1variable_1str(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_native_type * Signature: (JI)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Tget_1native_1type - (JNIEnv *, jclass, jlong, jint); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Tget_1native_1type(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Tdetect_class * Signature: (JI)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5Tdetect_1class - (JNIEnv *, jclass, jlong, jint); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5Tdetect_1class(JNIEnv *, jclass, jlong, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Tcommit * Signature: (JLjava/lang/String;JJJJ)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Tcommit - (JNIEnv *, jclass, jlong, jstring, jlong, jlong, jlong, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Tcommit(JNIEnv *, jclass, jlong, jstring, jlong, jlong, jlong, + jlong); /* * Class: hdf_hdf5lib_H5 * Method: _H5Tarray_create2 * Signature: (JI[J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5__1H5Tarray_1create2 - (JNIEnv *, jclass, jlong, jint, jlongArray); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5__1H5Tarray_1create2(JNIEnv *, jclass, jlong, jint, jlongArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Tget_array_dims2 * Signature: (J[J)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Tget_1array_1dims2 - (JNIEnv *, jclass, jlong, jlongArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Tget_1array_1dims2(JNIEnv *, jclass, jlong, jlongArray); /* * Class: hdf_hdf5lib_H5 * Method: H5Tconvert * Signature: (JJJ[B[BJ)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Tconvert - (JNIEnv *, jclass, jlong, jlong, jlong, jbyteArray, jbyteArray, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Tconvert(JNIEnv *, jclass, jlong, jlong, jlong, jbyteArray, + jbyteArray, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Tflush * Signature: (J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Tflush - (JNIEnv*, jclass, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Tflush(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Trefresh * Signature: (J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5Trefresh - (JNIEnv*, jclass, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5Trefresh(JNIEnv *, jclass, jlong); #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5T */ +#endif /* Included_hdf_hdf5lib_H5_H5T */ diff --git a/java/src/jni/h5util.c b/java/src/jni/h5util.c index af83caa..2de5d87 100644 --- a/java/src/jni/h5util.c +++ b/java/src/jni/h5util.c @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -29,8 +29,8 @@ extern "C" { #include "h5util.h" /* size of hyperslab buffer when a dataset is bigger than H5TOOLS_MALLOCSIZE */ -hsize_t H5TOOLS_BUFSIZE = (32 * 1024 * 1024); /* 32 MB */ -int H5TOOLS_TEXT_BLOCK = 16; /* Number of elements on a line in a text export file */ +hsize_t H5TOOLS_BUFSIZE = (32 * 1024 * 1024); /* 32 MB */ +int H5TOOLS_TEXT_BLOCK = 16; /* Number of elements on a line in a text export file */ /* * Pointer to the JNI's Virtual Machine; used for callback functions. @@ -45,36 +45,49 @@ jobject get_callback; jobject set_callback; jobject delete_callback; -H5E_auto2_t efunc; -void *edata; +H5E_auto2_t efunc; +void * edata; /********************/ /* Local Prototypes */ /********************/ -static int h5str_dump_region_blocks(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj); -static int h5str_dump_region_points(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj); -static int h5str_is_zero(const void *_mem, size_t size); -static hid_t h5str_get_native_type(hid_t type); -static hid_t h5str_get_little_endian_type(hid_t type); -static hid_t h5str_get_big_endian_type(hid_t type); -static htri_t h5str_detect_vlen(hid_t tid); -static htri_t h5str_detect_vlen_str(hid_t tid); -static int h5tools_dump_simple_data(JNIEnv *env, FILE *stream, hid_t container, hid_t type, void *_mem, hsize_t nelmts); -static int h5str_render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t block_nelmts); -static int render_bin_output_region_data_blocks(FILE *stream, hid_t region_id, - hid_t container, int ndims, hid_t type_id, hssize_t nblocks, hsize_t *ptdata); -static int render_bin_output_region_blocks(FILE *stream, hid_t region_space, - hid_t region_id, hid_t container); -static int render_bin_output_region_data_points(FILE *stream, hid_t region_space, hid_t region_id, - hid_t container, int ndims, hid_t type_id, hssize_t npoints, hsize_t *ptdata); -static int render_bin_output_region_points(FILE *stream, hid_t region_space, - hid_t region_id, hid_t container); +int h5str_region_dataset(JNIEnv *env, h5str_t *out_str, H5R_ref_t *ref_vp, int expand_data); + +static int h5str_dump_region_blocks(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj, + int expand_data); +static int h5str_dump_region_points(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj, + int expand_data); +static int h5str_dump_region_attribute(JNIEnv *env, h5str_t *str, hid_t region_id); +static int h5str_is_zero(const void *_mem, size_t size); +static hid_t h5str_get_native_type(hid_t type); +static hid_t h5str_get_little_endian_type(hid_t type); +static hid_t h5str_get_big_endian_type(hid_t type); +static htri_t h5str_detect_vlen(hid_t tid); +static htri_t h5str_detect_vlen_str(hid_t tid); +static int h5str_dump_simple_data(JNIEnv *env, FILE *stream, hid_t container, hid_t type, void *_mem, + hsize_t nelmts); +static int h5str_render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, + hsize_t block_nelmts); +static int render_bin_output_region_data_blocks(FILE *stream, hid_t region_id, hid_t container, int ndims, + hid_t type_id, hssize_t nblocks, hsize_t *ptdata); +static int render_bin_output_region_blocks(FILE *stream, hid_t region_space, hid_t region_id, + hid_t container); +static int render_bin_output_region_data_points(FILE *stream, hid_t region_space, hid_t region_id, + hid_t container, int ndims, hid_t type_id, hssize_t npoints, + hsize_t *ptdata); +static int render_bin_output_region_points(FILE *stream, hid_t region_space, hid_t region_id, + hid_t container); + +/* Strings for output */ +#define H5_TOOLS_GROUP "GROUP" +#define H5_TOOLS_DATASET "DATASET" +#define H5_TOOLS_DATATYPE "DATATYPE" +#define H5_TOOLS_ATTRIBUTE "ATTRIBUTE" /** frees memory held by array of strings */ void -h5str_array_free - (char **strs, size_t len) +h5str_array_free(char **strs, size_t len) { size_t i; @@ -91,20 +104,18 @@ h5str_array_free /** allocate a new str with given length */ void -h5str_new - (h5str_t *str, size_t len) +h5str_new(h5str_t *str, size_t len) { if (str && len > 0) { - str->s = (char *)HDmalloc(len); - str->max = len; + str->s = (char *)HDmalloc(len); + str->max = len; str->s[0] = '\0'; } /* end if */ } /* end h5str_new */ /** free string memory */ void -h5str_free - (h5str_t *str) +h5str_free(h5str_t *str) { if (str && str->max > 0) { HDfree(str->s); @@ -117,15 +128,14 @@ h5str_free * TODO: no error return. malloc can fail. */ void -h5str_resize - (h5str_t *str, size_t new_len) +h5str_resize(h5str_t *str, size_t new_len) { char *new_str; if (!str || new_len <= 0 || str->max == new_len) return; - if (NULL == (new_str = (char *) HDmalloc(new_len))) + if (NULL == (new_str = (char *)HDmalloc(new_len))) return; if (new_len > str->max) /* increase memory */ @@ -134,7 +144,7 @@ h5str_resize HDstrncpy(new_str, str->s, new_len - 1); HDfree(str->s); - str->s = new_str; + str->s = new_str; str->max = new_len; } /* end h5str_resize */ @@ -142,9 +152,8 @@ h5str_resize Return Value: the char string point to str->s */ -char* -h5str_append - (h5str_t *str, const char* cstr) +char * +h5str_append(h5str_t *str, const char *cstr) { size_t len; @@ -170,22 +179,21 @@ h5str_append * FAILURE: 0 */ size_t -h5str_convert - (JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_buf, size_t out_buf_offset) +h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_buf, size_t out_buf_offset) { unsigned char *ucptr = NULL; - static char fmt_llong[8], fmt_ullong[8]; - H5T_class_t tclass = H5T_NO_CLASS; - const char delimiter[] = " ," H5_COMPOUND_BEGIN_INDICATOR H5_COMPOUND_END_INDICATOR \ - H5_ARRAY_BEGIN_INDICATOR H5_ARRAY_END_INDICATOR \ - H5_VLEN_BEGIN_INDICATOR H5_VLEN_END_INDICATOR; - size_t typeSize = 0; - hid_t mtid = H5I_INVALID_HID; - char *this_str = NULL; - char *token; - char *cptr = NULL; - int n; - size_t retVal = 0; + char fmt_llong[8], fmt_ullong[8]; + H5T_class_t tclass = H5T_NO_CLASS; + const char delimiter[] = " ," H5_COMPOUND_BEGIN_INDICATOR H5_COMPOUND_END_INDICATOR + H5_ARRAY_BEGIN_INDICATOR H5_ARRAY_END_INDICATOR H5_VLEN_BEGIN_INDICATOR H5_VLEN_END_INDICATOR; + + size_t retVal = 0; + size_t typeSize = 0; + hid_t mtid = H5I_INVALID_HID; + char * this_str = NULL; + char * cptr = NULL; + char * token; + int n; if (!in_str) H5_NULL_ARGUMENT_ERROR(ENVONLY, "h5str_convert: in_str is NULL"); @@ -193,8 +201,8 @@ h5str_convert H5_NULL_ARGUMENT_ERROR(ENVONLY, "h5str_convert: out_buf is NULL"); this_str = *in_str; - cptr = &(((char *) out_buf)[out_buf_offset]); - ucptr = &(((unsigned char *) out_buf)[out_buf_offset]); + cptr = &(((char *)out_buf)[out_buf_offset]); + ucptr = &(((unsigned char *)out_buf)[out_buf_offset]); if (H5T_NO_CLASS == (tclass = H5Tget_class(tid))) H5_LIBRARY_ERROR(ENVONLY); @@ -203,48 +211,46 @@ h5str_convert /* Build default formats for long long types */ if (!fmt_llong[0]) { - if (HDsprintf(fmt_llong, "%%%sd", H5_PRINTF_LL_WIDTH) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_convert: HDsprintf failure"); - if (HDsprintf(fmt_ullong, "%%%su", H5_PRINTF_LL_WIDTH) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_convert: HDsprintf failure"); + if (HDsnprintf(fmt_llong, sizeof(fmt_llong), "%%%sd", H5_PRINTF_LL_WIDTH) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_convert: HDsnprintf failure"); + if (HDsnprintf(fmt_ullong, sizeof(fmt_ullong), "%%%su", H5_PRINTF_LL_WIDTH) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_convert: HDsnprintf failure"); } /* end if */ switch (tclass) { - case H5T_FLOAT: - { + case H5T_FLOAT: { token = HDstrtok(this_str, delimiter); switch (typeSize) { - case sizeof(float): - { - float tmp_float = 0.0; + case sizeof(float): { + float tmp_float = 0.0f; - sscanf(token, "%f", &tmp_float); + HDsscanf(token, "%f", &tmp_float); HDmemcpy(cptr, &tmp_float, sizeof(float)); break; } - case sizeof(double): - { + case sizeof(double): { double tmp_double = 0.0; - sscanf(token, "%lf", &tmp_double); + HDsscanf(token, "%lf", &tmp_double); HDmemcpy(cptr, &tmp_double, sizeof(double)); break; } -#if H5_SIZEOF_LONG_DOUBLE != 0 && H5_SIZEOF_LONG_DOUBLE != H5_SIZEOF_DOUBLE - case sizeof(long double): - { +#if H5_SIZEOF_LONG_DOUBLE != H5_SIZEOF_DOUBLE + case sizeof(long double): { long double tmp_ldouble = 0.0; - sscanf(token, "%Lf", &tmp_ldouble); + HDsscanf(token, "%Lg", &tmp_ldouble); HDmemcpy(cptr, &tmp_ldouble, sizeof(long double)); break; } #endif default: - H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_convert: floating-point datatype size didn't match any of expected sizes"); + H5_BAD_ARGUMENT_ERROR( + ENVONLY, + "h5str_convert: floating-point datatype size didn't match any of expected sizes"); break; } @@ -253,8 +259,7 @@ h5str_convert break; } - case H5T_STRING: - { + case H5T_STRING: { size_t len = HDstrlen(this_str); if (len > 0) { @@ -270,8 +275,7 @@ h5str_convert break; } - case H5T_INTEGER: - { + case H5T_INTEGER: { H5T_sign_t nsign = H5T_SGN_ERROR; if (H5T_SGN_ERROR == (nsign = H5Tget_sign(tid))) @@ -280,51 +284,48 @@ h5str_convert token = HDstrtok(this_str, delimiter); switch (typeSize) { - case sizeof(char): - { + case sizeof(char): { unsigned char tmp_uchar = 0; - signed char tmp_char = 0; + signed char tmp_char = 0; if (H5T_SGN_NONE == nsign) { - sscanf(token, "%hhu", &tmp_uchar); + HDsscanf(token, "%hhu", &tmp_uchar); HDmemcpy(cptr, &tmp_uchar, sizeof(unsigned char)); } else { - sscanf(token, "%hhd", &tmp_char); + HDsscanf(token, "%hhd", &tmp_char); HDmemcpy(cptr, &tmp_char, sizeof(char)); } break; } - case sizeof(short): - { + case sizeof(short): { unsigned short tmp_ushort = 0; - short tmp_short = 0; + short tmp_short = 0; if (H5T_SGN_NONE == nsign) { - sscanf(token, "%hu", &tmp_ushort); + HDsscanf(token, "%hu", &tmp_ushort); HDmemcpy(&tmp_ushort, cptr, sizeof(unsigned short)); } else { - sscanf(token, "%hd", &tmp_short); + HDsscanf(token, "%hd", &tmp_short); HDmemcpy(&tmp_short, cptr, sizeof(short)); } break; } - case sizeof(int): - { + case sizeof(int): { unsigned int tmp_uint = 0; - int tmp_int = 0; + int tmp_int = 0; if (H5T_SGN_NONE == nsign) { - sscanf(token, "%u", &tmp_uint); + HDsscanf(token, "%u", &tmp_uint); HDmemcpy(cptr, &tmp_uint, sizeof(unsigned int)); } else { - sscanf(token, "%d", &tmp_int); + HDsscanf(token, "%d", &tmp_int); HDmemcpy(cptr, &tmp_int, sizeof(int)); } @@ -332,17 +333,16 @@ h5str_convert } #if H5_SIZEOF_LONG != H5_SIZEOF_INT - case sizeof(long): - { + case sizeof(long): { unsigned long tmp_ulong = 0; - long tmp_long = 0; + long tmp_long = 0; if (H5T_SGN_NONE == nsign) { - sscanf(token, "%lu", &tmp_ulong); + HDsscanf(token, "%lu", &tmp_ulong); HDmemcpy(cptr, &tmp_ulong, sizeof(unsigned long)); } else { - sscanf(token, "%ld", &tmp_long); + HDsscanf(token, "%ld", &tmp_long); HDmemcpy(cptr, &tmp_long, sizeof(long)); } @@ -350,17 +350,16 @@ h5str_convert } #endif #if H5_SIZEOF_LONG_LONG != H5_SIZEOF_LONG - case sizeof(long long): - { + case sizeof(long long): { unsigned long long tmp_ullong = 0; - long long tmp_llong = 0; + long long tmp_llong = 0; if (H5T_SGN_NONE == nsign) { - sscanf(token, fmt_ullong, &tmp_ullong); + HDsscanf(token, fmt_ullong, &tmp_ullong); HDmemcpy(cptr, &tmp_ullong, sizeof(unsigned long long)); } else { - sscanf(token, fmt_llong, &tmp_llong); + HDsscanf(token, fmt_llong, &tmp_llong); HDmemcpy(cptr, &tmp_llong, sizeof(long long)); } @@ -369,7 +368,8 @@ h5str_convert #endif default: - H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_convert: integer datatype size didn't match any of expected sizes"); + H5_BAD_ARGUMENT_ERROR( + ENVONLY, "h5str_convert: integer datatype size didn't match any of expected sizes"); break; } @@ -378,8 +378,7 @@ h5str_convert break; } - case H5T_COMPOUND: - { + case H5T_COMPOUND: { unsigned i; size_t member_offset; @@ -387,11 +386,14 @@ h5str_convert H5_LIBRARY_ERROR(ENVONLY); /* Skip whitespace and compound indicators */ - while (*this_str == ' ') this_str++; - if (*this_str == '{') this_str++; - while (*this_str == ' ') this_str++; - - for (i = 0; i < (unsigned) n; i++) { + while (*this_str == ' ') + this_str++; + if (*this_str == '{') + this_str++; + while (*this_str == ' ') + this_str++; + + for (i = 0; i < (unsigned)n; i++) { member_offset = H5Tget_member_offset(tid, i); if ((mtid = H5Tget_member_type(tid, i)) < 0) @@ -403,9 +405,12 @@ h5str_convert } /* Skip whitespace and commas */ - while (*this_str == ' ') this_str++; - if (*this_str == ',') this_str++; - while (*this_str == ' ') this_str++; + while (*this_str == ' ') + this_str++; + if (*this_str == ',') + this_str++; + while (*this_str == ' ') + this_str++; if (H5Tclose(mtid) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -413,11 +418,14 @@ h5str_convert } /* Skip whitespace and compound indicators */ - while (*this_str == ' ') this_str++; - if (*this_str == '}') this_str++; - while (*this_str == ' ') this_str++; + while (*this_str == ' ') + this_str++; + if (*this_str == '}') + this_str++; + while (*this_str == ' ') + this_str++; - retVal = typeSize * (size_t) n; + retVal = typeSize * (size_t)n; break; } @@ -427,47 +435,41 @@ h5str_convert cptr = NULL; break; - case H5T_ENUM: - { + case H5T_ENUM: { void *value; token = HDstrtok(this_str, delimiter); switch (typeSize) { - case sizeof(char): - { + case sizeof(char): { unsigned char tmp_uchar = 0; - value = &tmp_uchar; + value = &tmp_uchar; break; } - case sizeof(short): - { + case sizeof(short): { unsigned short tmp_ushort = 0; - value = &tmp_ushort; + value = &tmp_ushort; break; } #if H5_SIZEOF_LONG != H5_SIZEOF_INT - case sizeof(long): - { + case sizeof(long): { unsigned long tmp_ulong = 0; - value = &tmp_ulong; + value = &tmp_ulong; break; } #endif #if H5_SIZEOF_LONG_LONG != H5_SIZEOF_LONG - case sizeof(long long): - { + case sizeof(long long): { unsigned long long tmp_ullong = 0; - value = &tmp_ullong; + value = &tmp_ullong; break; } #endif - default: - { + default: { unsigned int tmp_uint = 0; - value = &tmp_uint; + value = &tmp_uint; break; } } @@ -482,16 +484,18 @@ h5str_convert break; } - case H5T_ARRAY: - { + case H5T_ARRAY: { hsize_t i, dims[H5S_MAX_RANK], total_elmts; size_t baseTypeSize; int rank = 0; /* Skip whitespace and array indicators */ - while (*this_str == ' ') this_str++; - if (*this_str == '[') this_str++; - while (*this_str == ' ') this_str++; + while (*this_str == ' ') + this_str++; + if (*this_str == '[') + this_str++; + while (*this_str == ' ') + this_str++; if ((mtid = H5Tget_super(tid)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -505,11 +509,11 @@ h5str_convert if (H5Tget_array_dims2(tid, dims) < 0) H5_LIBRARY_ERROR(ENVONLY); - for (i = 0, total_elmts = 1; i < (hsize_t) rank; i++) + for (i = 0, total_elmts = 1; i < (hsize_t)rank; i++) total_elmts *= dims[i]; - if (NULL == (cptr = (char *) HDcalloc((size_t)total_elmts, baseTypeSize))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_convert: failed to allocate array buffer"); + if (NULL == (cptr = (char *)HDcalloc((size_t)total_elmts, baseTypeSize))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_convert: failed to allocate array buffer"); for (i = 0; i < total_elmts; i++) { if (!(h5str_convert(ENVONLY, &this_str, container, mtid, out_buf, i * baseTypeSize))) { @@ -518,9 +522,12 @@ h5str_convert } /* Skip whitespace and commas */ - while (*this_str == ' ') this_str++; - if (*this_str == ',') this_str++; - while (*this_str == ' ') this_str++; + while (*this_str == ' ') + this_str++; + if (*this_str == ',') + this_str++; + while (*this_str == ' ') + this_str++; } if (H5Tclose(mtid) < 0) @@ -528,20 +535,22 @@ h5str_convert mtid = H5I_INVALID_HID; /* Skip whitespace and array indicators */ - while (*this_str == ' ') this_str++; - if (*this_str == ']') this_str++; - while (*this_str == ' ') this_str++; + while (*this_str == ' ') + this_str++; + if (*this_str == ']') + this_str++; + while (*this_str == ' ') + this_str++; retVal = typeSize * total_elmts; break; } - case H5T_VLEN: - { - size_t i, baseTypeSize; - hvl_t *vl_buf = (hvl_t *) out_buf; - char cur_char; + case H5T_VLEN: { + size_t i, baseTypeSize; + hvl_t *vl_buf = (hvl_t *)out_buf; + char cur_char; if ((mtid = H5Tget_super(tid)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -550,21 +559,24 @@ h5str_convert H5_LIBRARY_ERROR(ENVONLY); if (NULL == (vl_buf->p = HDmalloc(baseTypeSize))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_convert: failed to allocate vlen buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_convert: failed to allocate vlen buffer"); vl_buf->len = 1; /* Skip whitespace and vlen indicators */ - while (*this_str == ' ') this_str++; - if (*this_str == '(') this_str++; - while (*this_str == ' ') this_str++; + while (*this_str == ' ') + this_str++; + if (*this_str == '(') + this_str++; + while (*this_str == ' ') + this_str++; cur_char = *this_str; for (i = 0; cur_char != ')' && cur_char != '\0'; i++) { if (i >= vl_buf->len) { char *tmp_realloc; - if (NULL == (tmp_realloc = (char *) HDrealloc(vl_buf->p, vl_buf->len * 2 * baseTypeSize))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_convert: failed to reallocate vlen buffer"); + if (NULL == (tmp_realloc = (char *)HDrealloc(vl_buf->p, vl_buf->len * 2 * baseTypeSize))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_convert: failed to reallocate vlen buffer"); vl_buf->len *= 2; vl_buf->p = tmp_realloc; } @@ -576,9 +588,12 @@ h5str_convert } /* Skip whitespace and commas */ - while (*this_str == ' ') this_str++; - if (*this_str == ',') this_str++; - while (*this_str == ' ') this_str++; + while (*this_str == ' ') + this_str++; + if (*this_str == ',') + this_str++; + while (*this_str == ' ') + this_str++; } vl_buf->len = i; @@ -588,9 +603,12 @@ h5str_convert mtid = H5I_INVALID_HID; /* Skip whitespace and vlen indicators */ - while (*this_str == ' ') this_str++; - if (*this_str == ')') this_str++; - while (*this_str == ' ') this_str++; + while (*this_str == ' ') + this_str++; + if (*this_str == ')') + this_str++; + while (*this_str == ' ') + this_str++; retVal = typeSize; @@ -598,8 +616,7 @@ h5str_convert } case H5T_NCLASSES: - case H5T_NO_CLASS: - { + case H5T_NO_CLASS: { H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_convert: invalid datatype class"); break; } @@ -607,8 +624,7 @@ h5str_convert case H5T_TIME: case H5T_BITFIELD: case H5T_OPAQUE: - default: - { + default: { /* All other types get copied raw */ HDmemcpy(ucptr, this_str, typeSize); @@ -625,6 +641,113 @@ done: return retVal; } /* end h5str_convert */ +/*------------------------------------------------------------------------- + * Function: h5str_sprint_reference + * + * Purpose: Object reference -- show the name of the referenced object. + * + * Return: SUCCEED or FAIL + *------------------------------------------------------------------------- + */ +int +h5str_sprint_reference(JNIEnv *env, h5str_t *out_str, void *ref_p) +{ + ssize_t buf_size; + char * ref_name = NULL; + H5R_ref_t *ref_vp = (H5R_ref_t *)ref_p; + + int ret_value = FAIL; + + buf_size = H5Rget_file_name(ref_vp, NULL, 0); + if (buf_size) { + ref_name = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1); + if (H5Rget_file_name(ref_vp, ref_name, buf_size + 1) >= 0) { + ref_name[buf_size] = '\0'; + if (!h5str_append(out_str, ref_name)) + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); + } + HDfree(ref_name); + ref_name = NULL; + } + + buf_size = H5Rget_obj_name(ref_vp, H5P_DEFAULT, NULL, 0); + if (buf_size) { + ref_name = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1); + if (H5Rget_obj_name(ref_vp, H5P_DEFAULT, ref_name, buf_size + 1) >= 0) { + ref_name[buf_size] = '\0'; + if (!h5str_append(out_str, ref_name)) + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); + } + HDfree(ref_name); + ref_name = NULL; + } + + if (H5Rget_type(ref_vp) == H5R_ATTR) { + buf_size = H5Rget_attr_name(ref_vp, NULL, 0); + if (buf_size) { + ref_name = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1); + if (H5Rget_attr_name(ref_vp, ref_name, buf_size + 1) >= 0) { + ref_name[buf_size] = '\0'; + if (!h5str_append(out_str, ref_name)) + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); + } + HDfree(ref_name); + ref_name = NULL; + } + } + + ret_value = SUCCEED; +done: + if (ref_name) + HDfree(ref_name); + + return ret_value; +} /* h5str_sprint_reference */ + +int +h5str_region_dataset(JNIEnv *env, h5str_t *out_str, H5R_ref_t *ref_vp, int expand_data) +{ + hid_t new_obj_id = H5I_INVALID_HID; + hid_t new_obj_sid = H5I_INVALID_HID; + H5S_sel_type region_type; + + int ret_value = FAIL; + + if ((new_obj_id = H5Ropen_object(ref_vp, H5P_DEFAULT, H5P_DEFAULT)) < 0) { + ret_value = SUCCEED; /* An uncreated region is a valid state */ + goto done; + } + + if ((new_obj_sid = H5Ropen_region(ref_vp, H5P_DEFAULT, H5P_DEFAULT)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + if (expand_data == 0) + if (h5str_sprint_reference(ENVONLY, out_str, ref_vp) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + if ((region_type = H5Sget_select_type(new_obj_sid)) > H5S_SEL_ERROR) { + if (H5S_SEL_POINTS == region_type) { + if (h5str_dump_region_points(ENVONLY, out_str, new_obj_sid, new_obj_id, expand_data) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + } + else if (H5S_SEL_HYPERSLABS == region_type) { + if (h5str_dump_region_blocks(ENVONLY, out_str, new_obj_sid, new_obj_id, expand_data) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + } + } + + ret_value = SUCCEED; +done: + if (new_obj_sid >= 0) + if (H5Sclose(new_obj_sid) < 0) + H5_LIBRARY_ERROR(ENVONLY); + if (new_obj_id >= 0) + if (H5Dclose(new_obj_id) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + return ret_value; +} + /* * Prints the value of a data point into a string. * @@ -633,16 +756,16 @@ done: * FAILURE: 0 */ size_t -h5str_sprintf - (JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *in_buf, size_t in_buf_len, int expand_data) +h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *in_buf, int expand_data) { - unsigned char *ucptr = (unsigned char *) in_buf; - static char fmt_llong[8], fmt_ullong[8]; - H5T_class_t tclass = H5T_NO_CLASS; + unsigned char *ucptr = (unsigned char *)in_buf; + char fmt_llong[8], fmt_ullong[8]; + H5T_class_t tclass = H5T_NO_CLASS; size_t typeSize = 0; - hid_t mtid = H5I_INVALID_HID; - char *cptr = (char *) in_buf; - char *this_str = NULL; + H5T_sign_t nsign = H5T_SGN_ERROR; + hid_t mtid = H5I_INVALID_HID; + char * cptr = (char *)in_buf; + char * this_str = NULL; int n; size_t retVal = 0; @@ -658,74 +781,73 @@ h5str_sprintf /* Build default formats for long long types */ if (!fmt_llong[0]) { - if (HDsprintf(fmt_llong, "%%%sd", H5_PRINTF_LL_WIDTH) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: sprintf failure"); - if (HDsprintf(fmt_ullong, "%%%su", H5_PRINTF_LL_WIDTH) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: sprintf failure"); + if (HDsnprintf(fmt_llong, sizeof(fmt_llong), "%%%sd", H5_PRINTF_LL_WIDTH) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure"); + if (HDsnprintf(fmt_ullong, sizeof(fmt_ullong), "%%%su", H5_PRINTF_LL_WIDTH) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure"); } /* end if */ - switch (tclass) { - case H5T_FLOAT: - { + case H5T_FLOAT: { switch (typeSize) { - case sizeof(float): - { - float tmp_float = 0.0; + case sizeof(float): { + float tmp_float = 0.0f; HDmemcpy(&tmp_float, cptr, sizeof(float)); - if (NULL == (this_str = (char *) HDmalloc(25))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + size_t this_len = 25; + if (NULL == (this_str = (char *)HDmalloc(this_len))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); - if (HDsprintf(this_str, "%g", tmp_float) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); + if (HDsnprintf(this_str, this_len, "%g", tmp_float) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure"); break; } - case sizeof(double): - { + case sizeof(double): { double tmp_double = 0.0; HDmemcpy(&tmp_double, cptr, sizeof(double)); - if (NULL == (this_str = (char *) HDmalloc(25))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + size_t this_len = 25; + if (NULL == (this_str = (char *)HDmalloc(this_len))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); - if (HDsprintf(this_str, "%g", tmp_double) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); + if (HDsnprintf(this_str, this_len, "%g", tmp_double) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure"); break; } -#if H5_SIZEOF_LONG_DOUBLE != 0 && H5_SIZEOF_LONG_DOUBLE != H5_SIZEOF_DOUBLE - case sizeof(long double): - { +#if H5_SIZEOF_LONG_DOUBLE != H5_SIZEOF_DOUBLE + case sizeof(long double): { long double tmp_ldouble = 0.0; HDmemcpy(&tmp_ldouble, cptr, sizeof(long double)); - if (NULL == (this_str = (char *) HDmalloc(27))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + size_t this_len = 27; + if (NULL == (this_str = (char *)HDmalloc(this_len))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); - if (HDsprintf(this_str, "%Lf", tmp_ldouble) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); + if (HDsnprintf(this_str, this_len, "%Lg", tmp_ldouble) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure"); break; } #endif default: - H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_sprintf: floating-point datatype size didn't match any of expected sizes"); + H5_BAD_ARGUMENT_ERROR( + ENVONLY, + "h5str_sprintf: floating-point datatype size didn't match any of expected sizes"); break; } break; } - case H5T_STRING: - { - htri_t is_variable; - char *tmp_str; + case H5T_STRING: { + htri_t is_variable; + char * tmp_str; typeSize = 0; @@ -733,7 +855,10 @@ h5str_sprintf H5_LIBRARY_ERROR(ENVONLY); if (is_variable) { - if (NULL != (tmp_str = *(char **) in_buf)) + /* cp_vp is the pointer into the struct where a `char*' is stored. So we have + * to dereference the pointer to get the `char*' to pass to HDstrlen(). */ + tmp_str = *(char **)in_buf; + if (NULL != tmp_str) typeSize = HDstrlen(tmp_str); } else { @@ -742,163 +867,167 @@ h5str_sprintf /* Check for NULL pointer for string */ if (!tmp_str) { - if (NULL == (this_str = (char *) HDmalloc(5))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); - + if (NULL == (this_str = (char *)HDmalloc(5))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); HDstrncpy(this_str, "NULL", 5); } else { if (typeSize > 0) { - if (NULL == (this_str = (char *) HDmalloc(typeSize + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); - - HDstrncpy(this_str, tmp_str, typeSize); - this_str[typeSize] = '\0'; + if (NULL == (this_str = HDstrdup(tmp_str))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); } } break; } - case H5T_INTEGER: - { - H5T_sign_t nsign = H5T_SGN_ERROR; + case H5T_INTEGER: { if (H5T_SGN_ERROR == (nsign = H5Tget_sign(tid))) H5_LIBRARY_ERROR(ENVONLY); switch (typeSize) { - case sizeof(char): - { + case sizeof(char): { unsigned char tmp_uchar = 0; - char tmp_char = 0; + char tmp_char = 0; + size_t this_len = 7; if (H5T_SGN_NONE == nsign) { HDmemcpy(&tmp_uchar, cptr, sizeof(unsigned char)); - if (NULL == (this_str = (char *) HDmalloc(7))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + if (NULL == (this_str = (char *)HDmalloc(this_len))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "h5str_sprintf: failed to allocate string buffer"); - if (HDsprintf(this_str, "%u", tmp_uchar) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); + if (HDsnprintf(this_str, this_len, "%hhu", tmp_uchar) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure"); } else { HDmemcpy(&tmp_char, cptr, sizeof(char)); - if (NULL == (this_str = (char *) HDmalloc(7))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + if (NULL == (this_str = (char *)HDmalloc(this_len))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "h5str_sprintf: failed to allocate string buffer"); - if (HDsprintf(this_str, "%hhd", tmp_char) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); + if (HDsnprintf(this_str, this_len, "%hhd", tmp_char) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure"); } break; } - case sizeof(short): - { + case sizeof(short): { unsigned short tmp_ushort = 0; - short tmp_short = 0; + short tmp_short = 0; + size_t this_len = 9; if (H5T_SGN_NONE == nsign) { HDmemcpy(&tmp_ushort, cptr, sizeof(unsigned short)); - if (NULL == (this_str = (char *) HDmalloc(9))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + if (NULL == (this_str = (char *)HDmalloc(this_len))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "h5str_sprintf: failed to allocate string buffer"); - if (HDsprintf(this_str, "%u", tmp_ushort) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); + if (HDsnprintf(this_str, this_len, "%hu", tmp_ushort) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure"); } else { HDmemcpy(&tmp_short, cptr, sizeof(short)); - if (NULL == (this_str = (char *) HDmalloc(9))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + if (NULL == (this_str = (char *)HDmalloc(this_len))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "h5str_sprintf: failed to allocate string buffer"); - if (HDsprintf(this_str, "%d", tmp_short) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); + if (HDsnprintf(this_str, this_len, "%hd", tmp_short) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure"); } break; } - case sizeof(int): - { + case sizeof(int): { unsigned int tmp_uint = 0; - int tmp_int = 0; + int tmp_int = 0; + size_t this_len = 14; if (H5T_SGN_NONE == nsign) { HDmemcpy(&tmp_uint, cptr, sizeof(unsigned int)); - if (NULL == (this_str = (char *) HDmalloc(14))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + if (NULL == (this_str = (char *)HDmalloc(this_len))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "h5str_sprintf: failed to allocate string buffer"); - if (HDsprintf(this_str, "%u", tmp_uint) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); + if (HDsnprintf(this_str, this_len, "%u", tmp_uint) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure"); } else { HDmemcpy(&tmp_int, cptr, sizeof(int)); - if (NULL == (this_str = (char *) HDmalloc(14))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + if (NULL == (this_str = (char *)HDmalloc(this_len))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "h5str_sprintf: failed to allocate string buffer"); - if (HDsprintf(this_str, "%d", tmp_int) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); + if (HDsnprintf(this_str, this_len, "%d", tmp_int) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure"); } break; } #if H5_SIZEOF_LONG != H5_SIZEOF_INT - case sizeof(long): - { + case sizeof(long): { unsigned long tmp_ulong = 0; - long tmp_long = 0; + long tmp_long = 0; + size_t this_len = 23; if (H5T_SGN_NONE == nsign) { HDmemcpy(&tmp_ulong, cptr, sizeof(unsigned long)); - if (NULL == (this_str = (char *) HDmalloc(23))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + if (NULL == (this_str = (char *)HDmalloc(this_len))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "h5str_sprintf: failed to allocate string buffer"); - if (HDsprintf(this_str, "%lu", tmp_ulong) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); + if (HDsnprintf(this_str, this_len, "%lu", tmp_ulong) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure"); } else { HDmemcpy(&tmp_long, cptr, sizeof(long)); - if (NULL == (this_str = (char *) HDmalloc(23))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + if (NULL == (this_str = (char *)HDmalloc(this_len))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "h5str_sprintf: failed to allocate string buffer"); - if (HDsprintf(this_str, "%ld", tmp_long) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); + if (HDsnprintf(this_str, this_len, "%ld", tmp_long) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure"); } break; } #endif #if H5_SIZEOF_LONG_LONG != H5_SIZEOF_LONG - case sizeof(long long): - { + case sizeof(long long): { unsigned long long tmp_ullong = 0; - long long tmp_llong = 0; + long long tmp_llong = 0; + size_t this_len = 25; if (H5T_SGN_NONE == nsign) { HDmemcpy(&tmp_ullong, cptr, sizeof(unsigned long long)); - if (NULL == (this_str = (char *) HDmalloc(25))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + if (NULL == (this_str = (char *)HDmalloc(this_len))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "h5str_sprintf: failed to allocate string buffer"); - if (HDsprintf(this_str, fmt_ullong, tmp_ullong) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); + if (HDsnprintf(this_str, this_len, fmt_ullong, tmp_ullong) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure"); } else { HDmemcpy(&tmp_llong, cptr, sizeof(long long)); - if (NULL == (this_str = (char *) HDmalloc(25))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + if (NULL == (this_str = (char *)HDmalloc(this_len))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "h5str_sprintf: failed to allocate string buffer"); - if (HDsprintf(this_str, fmt_llong, tmp_llong) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); + if (HDsnprintf(this_str, this_len, fmt_llong, tmp_llong) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure"); } break; @@ -906,15 +1035,15 @@ h5str_sprintf #endif default: - H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_sprintf: integer datatype size didn't match any of expected sizes"); + H5_BAD_ARGUMENT_ERROR( + ENVONLY, "h5str_sprintf: integer datatype size didn't match any of expected sizes"); break; } break; } - case H5T_COMPOUND: - { + case H5T_COMPOUND: { unsigned i; size_t offset; @@ -922,20 +1051,20 @@ h5str_sprintf H5_LIBRARY_ERROR(ENVONLY); if (!h5str_append(out_str, H5_COMPOUND_BEGIN_INDICATOR)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); - for (i = 0; i < (unsigned) n; i++) { + for (i = 0; i < (unsigned)n; i++) { offset = H5Tget_member_offset(tid, i); if ((mtid = H5Tget_member_type(tid, i)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (!h5str_sprintf(ENVONLY, out_str, container, mtid, &cptr[offset], in_buf_len, expand_data)) + if (!h5str_sprintf(ENVONLY, out_str, container, mtid, &cptr[offset], expand_data)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - if ((i + 1) < (unsigned) n) + if ((i + 1) < (unsigned)n) if (!h5str_append(out_str, ", ")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); if (H5Tclose(mtid) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -943,150 +1072,170 @@ h5str_sprintf } if (!h5str_append(out_str, H5_COMPOUND_END_INDICATOR)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); break; } - case H5T_ENUM: - { + case H5T_ENUM: { char enum_name[1024]; if (H5Tenum_nameof(tid, cptr, enum_name, sizeof enum_name) >= 0) { if (!h5str_append(out_str, enum_name)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); } else { size_t i; - if (NULL == (this_str = (char *) HDmalloc(4 * (typeSize + 1)))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + size_t this_len = 4 * (typeSize + 1); + if (NULL == (this_str = (char *)HDmalloc(this_len))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); if (1 == typeSize) { - if (HDsprintf(this_str, "%#02x", ucptr[0]) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); + if (HDsnprintf(this_str, this_len, "%#02x", ucptr[0]) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure"); } else { for (i = 0; i < typeSize; i++) - if (HDsprintf(this_str, "%s%02x", i ? ":" : "", ucptr[i]) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); + if (HDsnprintf(this_str, this_len, "%s%02x", i ? ":" : "", ucptr[i]) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure"); } } break; } - case H5T_REFERENCE: - { - if (h5str_is_zero(cptr, typeSize)) { - if (!h5str_append(out_str, "NULL")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - break; - } - - if (H5R_DSET_REG_REF_BUF_SIZE == typeSize) { - H5S_sel_type region_type = H5S_SEL_ERROR; - hid_t region_obj = H5I_INVALID_HID; - hid_t region = H5I_INVALID_HID; - char ref_name[1024]; - - /* - * Dataset region reference -- - * show the type and the referenced object - */ - - /* Get name of the dataset the region reference points to using H5Rget_name */ - if ((region_obj = H5Rdereference2(container, H5P_DEFAULT, H5R_DATASET_REGION, cptr)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if ((region = H5Rget_region(container, H5R_DATASET_REGION, cptr)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if (expand_data) { - if (H5S_SEL_ERROR == (region_type = H5Sget_select_type(region))) - H5_LIBRARY_ERROR(ENVONLY); - - if (H5S_SEL_POINTS == region_type) { - if (h5str_dump_region_points_data(ENVONLY, out_str, region, region_obj) < 0) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } - else { - if (h5str_dump_region_blocks_data(ENVONLY, out_str, region, region_obj) < 0) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } - } - else { - if (H5Rget_name(region_obj, H5R_DATASET_REGION, cptr, (char *)ref_name, 1024) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if (!h5str_append(out_str, ref_name)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - - if (H5S_SEL_ERROR == (region_type = H5Sget_select_type(region))) - H5_LIBRARY_ERROR(ENVONLY); - - if (H5S_SEL_POINTS == region_type) { - if (!h5str_append(out_str, " REGION_TYPE POINT")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - - if (h5str_dump_region_points(ENVONLY, out_str, region, region_obj) < 0) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } - else { - if (!h5str_append(out_str, " REGION_TYPE BLOCK")) + case H5T_REFERENCE: { + /* H5T_STD_REF */ + hid_t new_obj_id = H5I_INVALID_HID; + H5O_type_t obj_type = -1; /* Object type */ + H5R_type_t ref_type; /* Reference type */ + + H5R_ref_t *ref_vp = (H5R_ref_t *)cptr; + + ref_type = H5Rget_type(ref_vp); + if (!h5str_is_zero(ref_vp, H5Tget_size(H5T_STD_REF))) { + switch (ref_type) { + case H5R_OBJECT1: + if (H5Rget_obj_type3(ref_vp, H5P_DEFAULT, &obj_type) >= 0) { + switch (obj_type) { + case H5O_TYPE_DATASET: + if (h5str_region_dataset(ENVONLY, out_str, ref_vp, expand_data) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + break; + + case H5O_TYPE_GROUP: + case H5O_TYPE_NAMED_DATATYPE: + case H5O_TYPE_MAP: + case H5O_TYPE_UNKNOWN: + case H5O_TYPE_NTYPES: + default: { + /* Object references -- show the type and OID of the referenced object. */ + H5O_info2_t oi; + char * obj_tok_str = NULL; + if ((new_obj_id = H5Ropen_object(ref_vp, H5P_DEFAULT, H5P_DEFAULT)) >= + 0) { + H5Oget_info3(new_obj_id, &oi, H5O_INFO_BASIC); + H5Otoken_to_str(new_obj_id, &oi.token, &obj_tok_str); + if (H5Dclose(new_obj_id) < 0) + H5_LIBRARY_ERROR(ENVONLY); + } + else + H5_LIBRARY_ERROR(ENVONLY); + + size_t this_len = 14; + if (NULL == (this_str = (char *)HDmalloc(this_len))) + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + if (HDsnprintf(this_str, this_len, "%u-", (unsigned)oi.type) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure"); + if (!h5str_append(out_str, this_str)) + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); + HDfree(this_str); + this_str = NULL; + + /* Print OID */ + { + char *token_str; + + H5Otoken_to_str(tid, &oi.token, &token_str); + + size_t that_len = 64 + strlen(token_str) + 1; + if (NULL == (this_str = HDmalloc(that_len))) + H5_OUT_OF_MEMORY_ERROR( + ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + if (HDsnprintf(this_str, that_len, "%lu:%s", oi.fileno, token_str) < + 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure"); + + H5free_memory(token_str); + } + } break; + } /* end switch */ + } + else + H5_LIBRARY_ERROR(ENVONLY); + break; + case H5R_DATASET_REGION1: + if (h5str_region_dataset(ENVONLY, out_str, ref_vp, expand_data) < 0) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - - if (h5str_dump_region_blocks(ENVONLY, out_str, region, region_obj) < 0) + break; + case H5R_OBJECT2: + if (H5Rget_obj_type3(ref_vp, H5P_DEFAULT, &obj_type) >= 0) { + switch (obj_type) { + case H5O_TYPE_GROUP: + break; + + case H5O_TYPE_DATASET: + if (h5str_region_dataset(ENVONLY, out_str, ref_vp, expand_data) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + break; + + case H5O_TYPE_NAMED_DATATYPE: + break; + + case H5O_TYPE_MAP: + case H5O_TYPE_UNKNOWN: + case H5O_TYPE_NTYPES: + default: + break; + } /* end switch */ + } + else + H5_ASSERTION_ERROR(ENVONLY, "h5str_sprintf: H5R_OBJECT2 failed"); + break; + case H5R_DATASET_REGION2: + if (h5str_region_dataset(ENVONLY, out_str, ref_vp, expand_data) < 0) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } - } - - if (H5Sclose(region) < 0) - H5_LIBRARY_ERROR(ENVONLY); - region = H5I_INVALID_HID; - - if (H5Dclose(region_obj) < 0) - H5_LIBRARY_ERROR(ENVONLY); - region_obj = H5I_INVALID_HID; + break; + case H5R_ATTR: + if ((new_obj_id = H5Ropen_attr(ref_vp, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + if (h5str_dump_region_attribute(ENVONLY, out_str, new_obj_id) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + if (H5Aclose(new_obj_id) < 0) + H5_LIBRARY_ERROR(ENVONLY); + } + break; + case H5R_BADTYPE: + case H5R_MAXTYPE: + default: + break; + } /* end switch */ } - else if (H5R_OBJ_REF_BUF_SIZE == typeSize) { - H5O_info_t oi; - hid_t obj = H5I_INVALID_HID; - - /* - * Object references -- show the type and OID of the referenced - * object. - */ - - if (NULL == (this_str = (char *) HDmalloc(64))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); - - if ((obj = H5Rdereference2(container, H5P_DEFAULT, H5R_OBJECT, cptr)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if (H5Oget_info2(obj, &oi, H5O_INFO_ALL) < 0) - H5_LIBRARY_ERROR(ENVONLY); - /* Print object data and close object */ - if (HDsprintf(this_str, "%u-%lu", (unsigned) oi.type, oi.addr) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); - - if (H5Oclose(obj) < 0) - H5_LIBRARY_ERROR(ENVONLY); - obj = H5I_INVALID_HID; - } + if (H5Rdestroy(ref_vp) < 0) + H5_LIBRARY_ERROR(ENVONLY); break; } - case H5T_ARRAY: - { + case H5T_ARRAY: { hsize_t dims[H5S_MAX_RANK], i, total_elmts; size_t baseSize; int rank = 0; if (!h5str_append(out_str, H5_ARRAY_BEGIN_INDICATOR)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); if ((mtid = H5Tget_super(tid)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1100,20 +1249,20 @@ h5str_sprintf if (H5Tget_array_dims2(tid, dims) < 0) H5_LIBRARY_ERROR(ENVONLY); - for (i = 0, total_elmts = 1; i < (hsize_t) rank; i++) + for (i = 0, total_elmts = 1; i < (hsize_t)rank; i++) total_elmts *= dims[i]; for (i = 0; i < total_elmts; i++) { - if (!h5str_sprintf(ENVONLY, out_str, container, mtid, &(cptr[i * baseSize]), in_buf_len, expand_data)) + if (!h5str_sprintf(ENVONLY, out_str, container, mtid, &(cptr[i * baseSize]), expand_data)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if ((i + 1) < total_elmts) if (!h5str_append(out_str, ", ")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); } if (!h5str_append(out_str, H5_ARRAY_END_INDICATOR)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); if (H5Tclose(mtid) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1122,11 +1271,10 @@ h5str_sprintf break; } - case H5T_VLEN: - { - unsigned int i; - size_t baseSize; - hvl_t *vl_buf = (hvl_t *) in_buf; + case H5T_VLEN: { + unsigned int i; + size_t baseSize; + hvl_t * vl_buf = (hvl_t *)in_buf; if ((mtid = H5Tget_super(tid)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1135,19 +1283,20 @@ h5str_sprintf H5_LIBRARY_ERROR(ENVONLY); if (!h5str_append(out_str, H5_VLEN_BEGIN_INDICATOR)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); - for (i = 0; i < (unsigned) vl_buf->len; i++) { - if (!h5str_sprintf(ENVONLY, out_str, container, mtid, &(((char *) vl_buf->p)[i * baseSize]), vl_buf->len, expand_data)) + for (i = 0; i < (unsigned)vl_buf->len; i++) { + if (!h5str_sprintf(ENVONLY, out_str, container, mtid, &(((char *)vl_buf->p)[i * baseSize]), + expand_data)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - if ((i + 1) < (unsigned) vl_buf->len) + if ((i + 1) < (unsigned)vl_buf->len) if (!h5str_append(out_str, ", ")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); } if (!h5str_append(out_str, H5_VLEN_END_INDICATOR)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); if (H5Tclose(mtid) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1157,8 +1306,7 @@ h5str_sprintf } case H5T_NO_CLASS: - case H5T_NCLASSES: - { + case H5T_NCLASSES: { H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_sprintf: invalid datatype class"); break; } @@ -1166,23 +1314,23 @@ h5str_sprintf case H5T_TIME: case H5T_BITFIELD: case H5T_OPAQUE: - default: - { + default: { size_t i; /* All other types get printed as hexadecimal */ - if (NULL == (this_str = (char *) HDmalloc(4 * (typeSize + 1)))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); + size_t this_len = 4 * (typeSize + 1); + if (NULL == (this_str = (char *)HDmalloc(this_len))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_sprintf: failed to allocate string buffer"); if (1 == typeSize) { - if (HDsprintf(this_str, "%#02x", ucptr[0]) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); + if (HDsnprintf(this_str, this_len, "%#02x", ucptr[0]) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure"); } else { for (i = 0; i < typeSize; i++) - if (HDsprintf(this_str, "%s%02x", i ? ":" : "", ucptr[i]) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsprintf failure"); + if (HDsnprintf(this_str, this_len, "%s%02x", i ? ":" : "", ucptr[i]) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_sprintf: HDsnprintf failure"); } break; @@ -1191,7 +1339,7 @@ h5str_sprintf if (this_str) { if (!h5str_append(out_str, this_str)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); HDfree(this_str); this_str = NULL; @@ -1213,27 +1361,27 @@ done: * This is a special case subfunction to print the data in a region reference of type blocks. * * Return: - * The function returns FAIL if there was an error, otherwise SUCEED + * The function returns FAIL if there was an error, otherwise SUCCEED *------------------------------------------------------------------------- */ static int -h5str_print_region_data_blocks - (JNIEnv *env, hid_t region_id, h5str_t *str, int ndims, hid_t type_id, hssize_t nblocks, hsize_t *ptdata) +h5str_print_region_data_blocks(JNIEnv *env, hid_t region_id, h5str_t *str, int ndims, hid_t type_id, + hssize_t nblocks, hsize_t *ptdata) { - unsigned indx; - hsize_t *dims1 = NULL; - hsize_t *start = NULL; - hsize_t *count = NULL; - hsize_t blkndx; - hsize_t total_size[H5S_MAX_RANK]; - hsize_t numelem; - hsize_t numindex; - size_t jndx; - size_t type_size; - hid_t mem_space = H5I_INVALID_HID; - hid_t sid1 = H5I_INVALID_HID; - void *region_buf = NULL; - int ret_value = FAIL; + unsigned indx; + hsize_t *dims1 = NULL; + hsize_t *start = NULL; + hsize_t *count = NULL; + hsize_t blkndx; + hsize_t total_size[H5S_MAX_RANK]; + hsize_t numelem; + hsize_t numindex; + size_t jndx; + size_t type_size; + hid_t mem_space = H5I_INVALID_HID; + hid_t sid1 = H5I_INVALID_HID; + void * region_buf = NULL; + int ret_value = FAIL; if (ndims < 0) H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_print_region_data_blocks: ndims < 0"); @@ -1245,13 +1393,14 @@ h5str_print_region_data_blocks H5_LIBRARY_ERROR(ENVONLY); /* Allocate space for the dimension array */ - if (NULL == (dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_print_region_data_blocks: failed to allocate dimension array buffer"); + if (NULL == (dims1 = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "h5str_print_region_data_blocks: failed to allocate dimension array buffer"); /* Find the dimensions of each data space from the block coordinates */ - for (jndx = 0, numelem = 1; jndx < (size_t) ndims; jndx++) { + for (jndx = 0, numelem = 1; jndx < (size_t)ndims; jndx++) { dims1[jndx] = ptdata[jndx + (size_t)ndims] - ptdata[jndx] + 1; - numelem = dims1[jndx] * numelem; + numelem = dims1[jndx] * numelem; } /* end for */ /* Create dataspace for reading buffer */ @@ -1262,18 +1411,20 @@ h5str_print_region_data_blocks H5_LIBRARY_ERROR(ENVONLY); if (NULL == (region_buf = HDmalloc(type_size * (size_t)numelem))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_print_region_data_blocks: failed to allocate region buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_print_region_data_blocks: failed to allocate region buffer"); /* Select (x , x , ..., x ) x (y , y , ..., y ) hyperslab for reading memory dataset */ /* 1 2 n 1 2 n */ - if (NULL == (start = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_print_region_data_blocks: failed to allocate hyperslab start buffer"); + if (NULL == (start = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "h5str_print_region_data_blocks: failed to allocate hyperslab start buffer"); - if (NULL == (count = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_print_region_data_blocks: failed to allocate hyperslab count buffer"); + if (NULL == (count = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "h5str_print_region_data_blocks: failed to allocate hyperslab count buffer"); - for (blkndx = 0; blkndx < (hsize_t) nblocks; blkndx++) { - for (indx = 0; indx < (unsigned) ndims; indx++) { + for (blkndx = 0; blkndx < (hsize_t)nblocks; blkndx++) { + for (indx = 0; indx < (unsigned)ndims; indx++) { start[indx] = ptdata[indx + blkndx * (hsize_t)ndims * 2]; count[indx] = dims1[indx]; } /* end for */ @@ -1288,14 +1439,15 @@ h5str_print_region_data_blocks H5_LIBRARY_ERROR(ENVONLY); for (numindex = 0; numindex < numelem; numindex++) { - if (!h5str_sprintf(ENVONLY, str, region_id, type_id, ((char *)region_buf + numindex * type_size), 0, 1)) + if (!h5str_sprintf(ENVONLY, str, region_id, type_id, ((char *)region_buf + numindex * type_size), + 1)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (numindex + 1 < numelem) if (!h5str_append(str, ", ")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); } /* end for (jndx = 0; jndx < numelem; jndx++, region_elmtno++, ctx.cur_elmt++) */ - } /* end for (blkndx = 0; blkndx < nblocks; blkndx++) */ + } /* end for (blkndx = 0; blkndx < nblocks; blkndx++) */ ret_value = SUCCEED; @@ -1317,39 +1469,43 @@ done: } /* end h5str_print_region_data_blocks */ int -h5str_dump_region_blocks_data - (JNIEnv *env, h5str_t *str, hid_t region, hid_t region_id) +h5str_dump_region_blocks(JNIEnv *env, h5str_t *str, hid_t region_space, hid_t region_id, int expand_data) { - hssize_t nblocks; - hsize_t alloc_size; - hsize_t *ptdata = NULL; - hid_t dtype = H5I_INVALID_HID; - hid_t type_id = H5I_INVALID_HID; - int ndims = -1; - int ret_value = FAIL; + hssize_t nblocks; + hsize_t alloc_size; + hsize_t *ptdata = NULL; + hid_t dtype = H5I_INVALID_HID; + hid_t type_id = H5I_INVALID_HID; + int ndims = -1; + int ret_value = FAIL; + int i; + char tmp_str[256]; /* * This function fails if the region does not have blocks. */ - H5E_BEGIN_TRY { - nblocks = H5Sget_select_hyper_nblocks(region); - } H5E_END_TRY; - - if (nblocks < 0) - H5_LIBRARY_ERROR(ENVONLY); + H5E_BEGIN_TRY + { + nblocks = H5Sget_select_hyper_nblocks(region_space); + } + H5E_END_TRY; - if ((ndims = H5Sget_simple_extent_ndims(region)) < 0) + if (nblocks <= 0) { + ret_value = SUCCEED; + goto done; + } + if ((ndims = H5Sget_simple_extent_ndims(region_space)) < 0) H5_LIBRARY_ERROR(ENVONLY); /* Print block information */ alloc_size = (hsize_t)nblocks * (hsize_t)ndims * 2 * (hsize_t)sizeof(ptdata[0]); - if (alloc_size == (hsize_t)((size_t) alloc_size)) { - if (NULL == (ptdata = (hsize_t *) HDmalloc((size_t) alloc_size))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_blocks_data: failed to allocate region block buffer"); + if (NULL == (ptdata = (hsize_t *)HDmalloc((size_t)alloc_size))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_region_blocks: failed to allocate region block buffer"); - if (H5Sget_select_hyper_blocklist(region, (hsize_t) 0, (hsize_t) nblocks, ptdata) < 0) - H5_LIBRARY_ERROR(ENVONLY); + if (H5Sget_select_hyper_blocklist(region_space, (hsize_t)0, (hsize_t)nblocks, ptdata) < 0) + H5_LIBRARY_ERROR(ENVONLY); + if (expand_data) { if ((dtype = H5Dget_type(region_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -1358,103 +1514,59 @@ h5str_dump_region_blocks_data if (h5str_print_region_data_blocks(ENVONLY, region_id, str, ndims, type_id, nblocks, ptdata) < 0) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } /* if (alloc_size == (hsize_t)((size_t)alloc_size)) */ - - ret_value = SUCCEED; - -done: - if (type_id >= 0) - H5Tclose(type_id); - if (dtype >= 0) - H5Tclose(dtype); - if (ptdata) - HDfree(ptdata); - - return ret_value; -} /* end h5str_dump_region_blocks_data */ - -static int -h5str_dump_region_blocks - (JNIEnv *env, h5str_t *str, hid_t region, hid_t region_id) -{ - hssize_t nblocks; - hsize_t alloc_size; - hsize_t *ptdata = NULL; - char tmp_str[256]; - int ndims = -1; - int ret_value = FAIL; - - UNUSED(region_id); - - /* - * This function fails if the region does not have blocks. - */ - H5E_BEGIN_TRY { - nblocks = H5Sget_select_hyper_nblocks(region); - } H5E_END_TRY; - - if (nblocks < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if ((ndims = H5Sget_simple_extent_ndims(region)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - /* Print block information */ - alloc_size = (hsize_t)nblocks * (hsize_t)ndims * 2 * (hsize_t)sizeof(ptdata[0]); - if (alloc_size == (hsize_t)((size_t) alloc_size)) { - int i; - - if (NULL == (ptdata = (hsize_t *) HDmalloc((size_t) alloc_size))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_blocks: failed to allocate region block buffer"); - - if (H5Sget_select_hyper_blocklist(region, (hsize_t) 0, (hsize_t) nblocks, ptdata) < 0) - H5_LIBRARY_ERROR(ENVONLY); + } + else { + if (!h5str_append(str, " REGION_TYPE BLOCK")) + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); if (!h5str_append(str, " {")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); for (i = 0; i < nblocks; i++) { int j; if (!h5str_append(str, " ")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); /* Start coordinates and opposite corner */ for (j = 0; j < ndims; j++) { tmp_str[0] = '\0'; - if (HDsprintf(tmp_str, "%s%lu", j ? "," : "(", - (unsigned long) ptdata[i * 2 * ndims + j]) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_blocks: HDsprintf failure"); + if (HDsnprintf(tmp_str, sizeof(tmp_str), "%s%lu", j ? "," : "(", + (unsigned long)ptdata[i * 2 * ndims + j]) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_blocks: HDsnprintf failure"); if (!h5str_append(str, tmp_str)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); } for (j = 0; j < ndims; j++) { tmp_str[0] = '\0'; - if (HDsprintf(tmp_str, "%s%lu", j ? "," : ")-(", - (unsigned long) ptdata[i * 2 * ndims + j + ndims]) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_blocks: HDsprintf failure"); + if (HDsnprintf(tmp_str, sizeof(tmp_str), "%s%lu", j ? "," : ")-(", + (unsigned long)ptdata[i * 2 * ndims + j + ndims]) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_blocks: HDsnprintf failure"); if (!h5str_append(str, tmp_str)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); } if (!h5str_append(str, ") ")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); tmp_str[0] = '\0'; } if (!h5str_append(str, " }")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } /* if (alloc_size == (hsize_t)((size_t)alloc_size)) */ - + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); + } ret_value = SUCCEED; done: + if (type_id >= 0) + H5Tclose(type_id); + if (dtype >= 0) + H5Tclose(dtype); if (ptdata) HDfree(ptdata); @@ -1472,16 +1584,16 @@ done: *------------------------------------------------------------------------- */ static int -h5str_print_region_data_points - (JNIEnv *env, hid_t region_space, hid_t region_id, h5str_t *str, int ndims, hid_t type_id, hssize_t npoints, hsize_t *ptdata) +h5str_print_region_data_points(JNIEnv *env, hid_t region_space, hid_t region_id, h5str_t *str, int ndims, + hid_t type_id, hssize_t npoints, hsize_t *ptdata) { hsize_t *dims1 = NULL; hsize_t total_size[H5S_MAX_RANK]; size_t jndx; size_t type_size; - hid_t mem_space = H5I_INVALID_HID; - void *region_buf = NULL; - int ret_value = FAIL; + hid_t mem_space = H5I_INVALID_HID; + void * region_buf = NULL; + int ret_value = FAIL; UNUSED(ptdata); @@ -1489,8 +1601,9 @@ h5str_print_region_data_points H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_print_region_data_points: npoints < 0"); /* Allocate space for the dimension array */ - if (NULL == (dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_print_region_data_points: failed to allocate dimension array buffer"); + if (NULL == (dims1 = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "h5str_print_region_data_points: failed to allocate dimension array buffer"); dims1[0] = (hsize_t)npoints; @@ -1502,21 +1615,21 @@ h5str_print_region_data_points H5_LIBRARY_ERROR(ENVONLY); if (NULL == (region_buf = HDmalloc(type_size * (size_t)npoints))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_print_region_data_points: failed to allocate region buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_print_region_data_points: failed to allocate region buffer"); if (H5Dread(region_id, type_id, mem_space, region_space, H5P_DEFAULT, region_buf) < 0) H5_LIBRARY_ERROR(ENVONLY); - for (jndx = 0; jndx < (size_t) npoints; jndx++) { + for (jndx = 0; jndx < (size_t)npoints; jndx++) { if (H5Sget_simple_extent_dims(mem_space, total_size, NULL) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (!h5str_sprintf(ENVONLY, str, region_id, type_id, ((char *)region_buf + jndx * type_size), 0, 1)) + if (!h5str_sprintf(ENVONLY, str, region_id, type_id, ((char *)region_buf + jndx * type_size), 1)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - if (jndx + 1 < (size_t) npoints) + if (jndx + 1 < (size_t)npoints) if (!h5str_append(str, ", ")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); } /* end for (jndx = 0; jndx < npoints; jndx++, elmtno++) */ ret_value = SUCCEED; @@ -1533,135 +1646,92 @@ done: } /* end h5str_print_region_data_points */ int -h5str_dump_region_points_data - (JNIEnv *env, h5str_t *str, hid_t region, hid_t region_id) +h5str_dump_region_points(JNIEnv *env, h5str_t *str, hid_t region_space, hid_t region_id, int expand_data) { - hssize_t npoints; - hsize_t alloc_size; - hsize_t *ptdata = NULL; - hid_t dtype = H5I_INVALID_HID; - hid_t type_id = H5I_INVALID_HID; - int ndims = -1; - int ret_value = FAIL; + hsize_t alloc_size; + hssize_t npoints = -1; + hsize_t *ptdata = NULL; + hid_t dtype = H5I_INVALID_HID; + hid_t type_id = H5I_INVALID_HID; + int ndims = -1; + int ret_value = FAIL; + int i; + char tmp_str[256]; /* * This function fails if the region does not have points. */ - H5E_BEGIN_TRY { - npoints = H5Sget_select_elem_npoints(region); - } H5E_END_TRY; - - if (npoints < 0) - H5_LIBRARY_ERROR(ENVONLY); + H5E_BEGIN_TRY + { + npoints = H5Sget_select_elem_npoints(region_space); + } + H5E_END_TRY; - if ((ndims = H5Sget_simple_extent_ndims(region)) < 0) + if (npoints <= 0) { + ret_value = SUCCEED; + goto done; + } + if ((ndims = H5Sget_simple_extent_ndims(region_space)) < 0) H5_LIBRARY_ERROR(ENVONLY); /* Print point information */ - if (npoints > 0) { - alloc_size = (hsize_t)npoints * (hsize_t)ndims * (hsize_t)sizeof(ptdata[0]); - if (alloc_size == (hsize_t)((size_t) alloc_size)) { - if (NULL == (ptdata = (hsize_t *) HDmalloc((size_t) alloc_size))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_points_data: failed to allocate region point data buffer"); - - if (H5Sget_select_elem_pointlist(region, (hsize_t) 0, (hsize_t) npoints, ptdata) < 0) - H5_LIBRARY_ERROR(ENVONLY); + alloc_size = (hsize_t)npoints * (hsize_t)ndims * (hsize_t)sizeof(ptdata[0]); + if (NULL == (ptdata = (hsize_t *)HDmalloc((size_t)alloc_size))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "h5str_dump_region_points: failed to allocate region point data buffer"); - if ((dtype = H5Dget_type(region_id)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if ((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if (h5str_print_region_data_points(ENVONLY, region, region_id, - str, ndims, type_id, npoints, ptdata) < 0) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } - } - - ret_value = SUCCEED; - -done: - if (type_id >= 0) - H5Tclose(type_id); - if (dtype >= 0) - H5Tclose(dtype); - if (ptdata) - HDfree(ptdata); - - return ret_value; -} /* end h5str_dump_region_points_data */ - -static int -h5str_dump_region_points - (JNIEnv *env, h5str_t *str, hid_t region, hid_t region_id) -{ - hssize_t npoints; - hsize_t alloc_size; - hsize_t *ptdata = NULL; - char tmp_str[256]; - int ndims = -1; - int ret_value = FAIL; - - UNUSED(region_id); - - /* - * This function fails if the region does not have points. - */ - H5E_BEGIN_TRY { - npoints = H5Sget_select_elem_npoints(region); - } H5E_END_TRY; - - if (npoints < 0) + if (H5Sget_select_elem_pointlist(region_space, (hsize_t)0, (hsize_t)npoints, ptdata) < 0) H5_LIBRARY_ERROR(ENVONLY); - if ((ndims = H5Sget_simple_extent_ndims(region)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - /* Print point information */ - if (npoints > 0) { - int i; - - alloc_size = (hsize_t)npoints * (hsize_t)ndims * (hsize_t)sizeof(ptdata[0]); - if (alloc_size == (hsize_t)((size_t) alloc_size)) { - if (NULL == (ptdata = (hsize_t *) HDmalloc((size_t) alloc_size))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_points: failed to allocate region point buffer"); + if (expand_data) { + if ((dtype = H5Dget_type(region_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); - if (H5Sget_select_elem_pointlist(region, (hsize_t) 0, (hsize_t) npoints, ptdata) < 0) - H5_LIBRARY_ERROR(ENVONLY); + if ((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) < 0) + H5_LIBRARY_ERROR(ENVONLY); - if (!h5str_append(str, " {")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + if (h5str_print_region_data_points(ENVONLY, region_space, region_id, str, ndims, type_id, npoints, + ptdata) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + } + else { + if (!h5str_append(str, " REGION_TYPE POINT")) + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); - for (i = 0; i < npoints; i++) { - int j; + if (!h5str_append(str, " {")) + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); - if (!h5str_append(str, " ")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + for (i = 0; i < npoints; i++) { + int j; - for (j = 0; j < ndims; j++) { - tmp_str[0] = '\0'; + if (!h5str_append(str, " ")) + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); - if (HDsprintf(tmp_str, "%s%lu", j ? "," : "(", - (unsigned long) (ptdata[i * ndims + j])) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_points: HDsprintf failure"); + for (j = 0; j < ndims; j++) { + tmp_str[0] = '\0'; - if (!h5str_append(str, tmp_str)) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } /* end for (j = 0; j < ndims; j++) */ + if (HDsnprintf(tmp_str, sizeof(tmp_str), "%s%lu", j ? "," : "(", + (unsigned long)(ptdata[i * ndims + j])) < 0) + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_region_points: HDsnprintf failure"); - if (!h5str_append(str, ") ")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } /* end for (i = 0; i < npoints; i++) */ + if (!h5str_append(str, tmp_str)) + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); + } /* end for (j = 0; j < ndims; j++) */ - if (!h5str_append(str, " }")) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } /* end if (alloc_size == (hsize_t)((size_t) alloc_size)) */ - } /* end if (npoints > 0) */ + if (!h5str_append(str, ") ")) + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); + } /* end for (i = 0; i < npoints; i++) */ + if (!h5str_append(str, " }")) + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); + } ret_value = SUCCEED; done: + if (type_id >= 0) + H5Tclose(type_id); + if (dtype >= 0) + H5Tclose(dtype); if (ptdata) HDfree(ptdata); @@ -1669,10 +1739,9 @@ done: } /* end h5str_dump_region_points */ static int -h5str_is_zero - (const void *_mem, size_t size) +h5str_is_zero(const void *_mem, size_t size) { - const unsigned char *mem = (const unsigned char *) _mem; + const unsigned char *mem = (const unsigned char *)_mem; while (size-- > 0) if (mem[size]) @@ -1693,8 +1762,7 @@ h5str_is_zero *------------------------------------------------------------------------- */ static htri_t -h5str_detect_vlen - (hid_t tid) +h5str_detect_vlen(hid_t tid) { htri_t ret = FAIL; @@ -1718,55 +1786,54 @@ done: * Purpose: Recursive check for variable length string of a datatype. * * Return: - * TRUE : type conatains any variable length string + * TRUE : type contains any variable length string * FALSE : type doesn't contain any variable length string * Negative value: error occur * *------------------------------------------------------------------------- */ static htri_t -h5str_detect_vlen_str - (hid_t tid) +h5str_detect_vlen_str(hid_t tid) { H5T_class_t tclass = H5T_NO_CLASS; - htri_t ret = 0; + htri_t ret = 0; ret = H5Tis_variable_str(tid); - if((ret == 1) || (ret < 0)) + if ((ret == 1) || (ret < 0)) goto done; tclass = H5Tget_class(tid); - if(tclass == H5T_ARRAY || tclass == H5T_VLEN) { + if (tclass == H5T_ARRAY || tclass == H5T_VLEN) { hid_t btid = H5Tget_super(tid); - if(btid < 0) { + if (btid < 0) { ret = (htri_t)btid; goto done; } /* end if */ ret = h5str_detect_vlen_str(btid); - if((ret == 1) || (ret < 0)) { + if ((ret == 1) || (ret < 0)) { H5Tclose(btid); goto done; } /* end if */ - } /* end if */ - else if(tclass == H5T_COMPOUND) { + } /* end if */ + else if (tclass == H5T_COMPOUND) { unsigned i = 0; - int n = H5Tget_nmembers(tid); + int n = H5Tget_nmembers(tid); if (n < 0) goto done; - for(i = 0; i < (unsigned) n; i++) { + for (i = 0; i < (unsigned)n; i++) { hid_t mtid = H5Tget_member_type(tid, i); ret = h5str_detect_vlen_str(mtid); - if((ret == 1) || (ret < 0)) { + if ((ret == 1) || (ret < 0)) { H5Tclose(mtid); goto done; } H5Tclose(mtid); } /* end for */ - } /* end else */ + } /* end else */ done: return ret; @@ -1783,8 +1850,7 @@ done: *------------------------------------------------------------------------- */ static hid_t -h5str_get_native_type - (hid_t type) +h5str_get_native_type(hid_t type) { H5T_class_t type_class; hid_t p_type = H5I_INVALID_HID; @@ -1798,10 +1864,9 @@ h5str_get_native_type p_type = H5Tget_native_type(type, H5T_DIR_DEFAULT); done: - return(p_type); + return (p_type); } /* end h5str_get_native_type */ - /*------------------------------------------------------------------------- * Function: h5str_get_little_endian_type * @@ -1812,8 +1877,7 @@ done: *------------------------------------------------------------------------- */ static hid_t -h5str_get_little_endian_type - (hid_t tid) +h5str_get_little_endian_type(hid_t tid) { H5T_class_t type_class; H5T_sign_t sign; @@ -1829,56 +1893,52 @@ h5str_get_little_endian_type if ((sign = H5Tget_sign(tid)) < 0) goto done; - switch ( type_class ) { - case H5T_INTEGER: - { - if ( size == 1 && sign == H5T_SGN_2 ) + switch (type_class) { + case H5T_INTEGER: { + if (size == 1 && sign == H5T_SGN_2) p_type = H5Tcopy(H5T_STD_I8LE); - else if ( size == 2 && sign == H5T_SGN_2 ) + else if (size == 2 && sign == H5T_SGN_2) p_type = H5Tcopy(H5T_STD_I16LE); - else if ( size == 4 && sign == H5T_SGN_2 ) + else if (size == 4 && sign == H5T_SGN_2) p_type = H5Tcopy(H5T_STD_I32LE); - else if ( size == 8 && sign == H5T_SGN_2 ) + else if (size == 8 && sign == H5T_SGN_2) p_type = H5Tcopy(H5T_STD_I64LE); - else if ( size == 1 && sign == H5T_SGN_NONE ) + else if (size == 1 && sign == H5T_SGN_NONE) p_type = H5Tcopy(H5T_STD_U8LE); - else if ( size == 2 && sign == H5T_SGN_NONE ) + else if (size == 2 && sign == H5T_SGN_NONE) p_type = H5Tcopy(H5T_STD_U16LE); - else if ( size == 4 && sign == H5T_SGN_NONE ) + else if (size == 4 && sign == H5T_SGN_NONE) p_type = H5Tcopy(H5T_STD_U32LE); - else if ( size == 8 && sign == H5T_SGN_NONE ) + else if (size == 8 && sign == H5T_SGN_NONE) p_type = H5Tcopy(H5T_STD_U64LE); break; } - case H5T_FLOAT: - { - if ( size == 4 ) + case H5T_FLOAT: { + if (size == 4) p_type = H5Tcopy(H5T_IEEE_F32LE); - else if ( size == 8 ) + else if (size == 8) p_type = H5Tcopy(H5T_IEEE_F64LE); break; } - case H5T_BITFIELD: - { - if ( size == 1 ) + case H5T_BITFIELD: { + if (size == 1) p_type = H5Tcopy(H5T_STD_B8LE); - else if ( size == 2 ) + else if (size == 2) p_type = H5Tcopy(H5T_STD_B16LE); - else if ( size == 4 ) + else if (size == 4) p_type = H5Tcopy(H5T_STD_B32LE); - else if ( size == 8 ) + else if (size == 8) p_type = H5Tcopy(H5T_STD_B64LE); break; } case H5T_NO_CLASS: - case H5T_NCLASSES: - { + case H5T_NCLASSES: { goto done; break; } @@ -1898,7 +1958,7 @@ h5str_get_little_endian_type } done: - return(p_type); + return (p_type); } /* end h5str_get_little_endian_type */ /*------------------------------------------------------------------------- @@ -1911,8 +1971,7 @@ done: *------------------------------------------------------------------------- */ static hid_t -h5str_get_big_endian_type - (hid_t tid) +h5str_get_big_endian_type(hid_t tid) { H5T_class_t type_class; H5T_sign_t sign; @@ -1928,56 +1987,52 @@ h5str_get_big_endian_type if ((sign = H5Tget_sign(tid)) < 0) goto done; - switch ( type_class ) { - case H5T_INTEGER: - { - if ( size == 1 && sign == H5T_SGN_2 ) + switch (type_class) { + case H5T_INTEGER: { + if (size == 1 && sign == H5T_SGN_2) p_type = H5Tcopy(H5T_STD_I8BE); - else if ( size == 2 && sign == H5T_SGN_2 ) + else if (size == 2 && sign == H5T_SGN_2) p_type = H5Tcopy(H5T_STD_I16BE); - else if ( size == 4 && sign == H5T_SGN_2 ) + else if (size == 4 && sign == H5T_SGN_2) p_type = H5Tcopy(H5T_STD_I32BE); - else if ( size == 8 && sign == H5T_SGN_2 ) + else if (size == 8 && sign == H5T_SGN_2) p_type = H5Tcopy(H5T_STD_I64BE); - else if ( size == 1 && sign == H5T_SGN_NONE ) + else if (size == 1 && sign == H5T_SGN_NONE) p_type = H5Tcopy(H5T_STD_U8BE); - else if ( size == 2 && sign == H5T_SGN_NONE ) + else if (size == 2 && sign == H5T_SGN_NONE) p_type = H5Tcopy(H5T_STD_U16BE); - else if ( size == 4 && sign == H5T_SGN_NONE ) + else if (size == 4 && sign == H5T_SGN_NONE) p_type = H5Tcopy(H5T_STD_U32BE); - else if ( size == 8 && sign == H5T_SGN_NONE ) + else if (size == 8 && sign == H5T_SGN_NONE) p_type = H5Tcopy(H5T_STD_U64BE); break; } - case H5T_FLOAT: - { - if ( size == 4 ) + case H5T_FLOAT: { + if (size == 4) p_type = H5Tcopy(H5T_IEEE_F32BE); - else if ( size == 8 ) + else if (size == 8) p_type = H5Tcopy(H5T_IEEE_F64BE); break; } - case H5T_BITFIELD: - { - if ( size == 1 ) + case H5T_BITFIELD: { + if (size == 1) p_type = H5Tcopy(H5T_STD_B8BE); - else if ( size == 2 ) + else if (size == 2) p_type = H5Tcopy(H5T_STD_B16BE); - else if ( size == 4 ) + else if (size == 4) p_type = H5Tcopy(H5T_STD_B32BE); - else if ( size == 8 ) + else if (size == 8) p_type = H5Tcopy(H5T_STD_B64BE); break; } case H5T_NO_CLASS: - case H5T_NCLASSES: - { + case H5T_NCLASSES: { goto done; break; } @@ -1997,7 +2052,7 @@ h5str_get_big_endian_type } done: - return(p_type); + return (p_type); } /* end h5str_get_big_endian_type */ /*------------------------------------------------------------------------- @@ -2010,13 +2065,12 @@ done: *------------------------------------------------------------------------- */ static int -h5str_render_bin_output - (FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t block_nelmts) +h5str_render_bin_output(FILE *stream, hid_t container, hid_t tid, void *_mem, hsize_t block_nelmts) { - unsigned char *mem = (unsigned char*)_mem; + unsigned char *mem = (unsigned char *)_mem; H5T_class_t type_class; hsize_t block_index; - size_t size; /* datum size */ + size_t size; /* datum size */ int ret_value = 0; if (!(size = H5Tget_size(tid))) { @@ -2032,12 +2086,11 @@ h5str_render_bin_output switch (type_class) { case H5T_INTEGER: case H5T_FLOAT: - case H5T_ENUM: - { + case H5T_ENUM: { block_index = block_nelmts * size; while (block_index > 0) { - size_t bytes_in = 0; /* # of bytes to write */ - size_t bytes_wrote = 0; /* # of bytes written */ + size_t bytes_in = 0; /* # of bytes to write */ + size_t bytes_wrote = 0; /* # of bytes written */ if (block_index > sizeof(size_t)) bytes_in = sizeof(size_t); @@ -2058,12 +2111,11 @@ h5str_render_bin_output break; } - case H5T_STRING: - { - unsigned char tempuchar; - unsigned int i; - H5T_str_t pad; - char *s; + case H5T_STRING: { + unsigned char tempuchar; + unsigned int i; + H5T_str_t pad; + char * s; if ((pad = H5Tget_strpad(tid)) < 0) { ret_value = FAIL; @@ -2074,12 +2126,12 @@ h5str_render_bin_output mem = ((unsigned char *)_mem) + block_index * size; if (H5Tis_variable_str(tid)) { - s = *(char**) mem; + s = *(char **)mem; if (s != NULL) size = HDstrlen(s); } else { - s = (char *) mem; + s = (char *)mem; } for (i = 0; i < size && (s[i] || pad != H5T_STR_NULLTERM); i++) { HDmemcpy(&tempuchar, &s[i], sizeof(unsigned char)); @@ -2095,8 +2147,7 @@ h5str_render_bin_output break; } - case H5T_COMPOUND: - { + case H5T_COMPOUND: { unsigned j; size_t offset; hid_t memb = H5I_INVALID_HID; @@ -2108,8 +2159,8 @@ h5str_render_bin_output } for (block_index = 0; block_index < block_nelmts; block_index++) { - mem = ((unsigned char*)_mem) + block_index * size; - for (j = 0; j < (unsigned) nmembs; j++) { + mem = ((unsigned char *)_mem) + block_index * size; + for (j = 0; j < (unsigned)nmembs; j++) { offset = H5Tget_member_offset(tid, j); memb = H5Tget_member_type(tid, j); @@ -2129,8 +2180,7 @@ h5str_render_bin_output break; } - case H5T_ARRAY: - { + case H5T_ARRAY: { hsize_t dims[H5S_MAX_RANK], temp_nelmts, nelmts; hid_t memb; int k, ndims; @@ -2155,11 +2205,11 @@ h5str_render_bin_output for (k = 0, nelmts = 1; k < ndims; k++) { temp_nelmts = nelmts; temp_nelmts *= dims[k]; - nelmts = (size_t) temp_nelmts; + nelmts = (size_t)temp_nelmts; } for (block_index = 0; block_index < block_nelmts; block_index++) { - mem = ((unsigned char*)_mem) + block_index * size; + mem = ((unsigned char *)_mem) + block_index * size; /* dump the array element */ if (h5str_render_bin_output(stream, container, memb, mem, nelmts) < 0) { @@ -2173,8 +2223,7 @@ h5str_render_bin_output break; } - case H5T_VLEN: - { + case H5T_VLEN: { hsize_t nelmts; hid_t memb; @@ -2185,13 +2234,14 @@ h5str_render_bin_output } for (block_index = 0; block_index < block_nelmts; block_index++) { - mem = ((unsigned char*)_mem) + block_index * size; + mem = ((unsigned char *)_mem) + block_index * size; /* Get the number of sequence elements */ - nelmts = ((hvl_t *) mem)->len; + nelmts = ((hvl_t *)mem)->len; /* dump the array element */ - if (h5str_render_bin_output(stream, container, memb, ((char *) (((hvl_t *) mem)->p)), nelmts) < 0) { + if (h5str_render_bin_output(stream, container, memb, ((char *)(((hvl_t *)mem)->p)), nelmts) < + 0) { ret_value = FAIL; break; } @@ -2202,52 +2252,39 @@ h5str_render_bin_output break; } - case H5T_REFERENCE: - { - if (H5Tequal(tid, H5T_STD_REF_DSETREG)) { - H5S_sel_type region_type; - hid_t region_id, region_space; - - /* Region data */ - for (block_index = 0; block_index < block_nelmts; block_index++) { - mem = ((unsigned char*)_mem) + block_index * size; - - if ((region_id = H5Rdereference2(container, H5P_DEFAULT, H5R_DATASET_REGION, mem)) < 0) - continue; + case H5T_REFERENCE: { + hid_t region_id = H5I_INVALID_HID; + hid_t region_space = H5I_INVALID_HID; + H5S_sel_type region_type; - if ((region_space = H5Rget_region(container, H5R_DATASET_REGION, mem)) < 0) { - H5Dclose(region_id); - continue; - } - - if ((region_type = H5Sget_select_type(region_space)) < 0) { - H5Sclose(region_space); - H5Dclose(region_id); - continue; + /* Region data */ + for (block_index = 0; block_index < block_nelmts; block_index++) { + mem = ((unsigned char *)_mem) + block_index * size; + if ((region_id = H5Ropen_object((H5R_ref_t *)mem, H5P_DEFAULT, H5P_DEFAULT)) < 0) + continue; + if ((region_space = H5Ropen_region((H5R_ref_t *)mem, H5P_DEFAULT, H5P_DEFAULT)) >= 0) { + if (!h5str_is_zero(mem, H5Tget_size(H5T_STD_REF))) { + region_type = H5Sget_select_type(region_space); + if (region_type == H5S_SEL_POINTS) + ret_value = + render_bin_output_region_points(stream, region_space, region_id, container); + else if (region_type == H5S_SEL_HYPERSLABS) + ret_value = + render_bin_output_region_blocks(stream, region_space, region_id, container); } - - if (region_type == H5S_SEL_POINTS) - ret_value = render_bin_output_region_points(stream, region_space, region_id, container); - else - ret_value = render_bin_output_region_blocks(stream, region_space, region_id, container); - H5Sclose(region_space); - H5Dclose(region_id); + } /* end if (region_space >= 0) */ + H5Dclose(region_id); - if (ret_value < 0) - break; - } - } - else if (H5Tequal(tid, H5T_STD_REF_OBJ)) { - ; + if (ret_value < 0) + break; } break; } case H5T_NO_CLASS: - case H5T_NCLASSES: - { + case H5T_NCLASSES: { ret_value = FAIL; goto done; break; @@ -2258,7 +2295,7 @@ h5str_render_bin_output case H5T_OPAQUE: default: for (block_index = 0; block_index < block_nelmts; block_index++) { - mem = ((unsigned char*)_mem) + block_index * size; + mem = ((unsigned char *)_mem) + block_index * size; if (size != fwrite(mem, sizeof(char), size, stream)) { ret_value = FAIL; break; @@ -2278,13 +2315,13 @@ done: * This is a special case subfunction to print the data in a region reference of type blocks. * * Return: - * The function returns FAIL if there was an error, otherwise SUCEED + * The function returns FAIL if there was an error, otherwise SUCCEED * *------------------------------------------------------------------------- */ static int -render_bin_output_region_data_blocks - (FILE *stream, hid_t region_id, hid_t container, int ndims, hid_t type_id, hssize_t nblocks, hsize_t *ptdata) +render_bin_output_region_data_blocks(FILE *stream, hid_t region_id, hid_t container, int ndims, hid_t type_id, + hssize_t nblocks, hsize_t *ptdata) { hsize_t *dims1 = NULL; hsize_t *start = NULL; @@ -2292,9 +2329,9 @@ render_bin_output_region_data_blocks hsize_t numelem; hsize_t total_size[H5S_MAX_RANK]; size_t type_size; - hid_t sid1 = H5I_INVALID_HID; - hid_t mem_space = H5I_INVALID_HID; - void *region_buf = NULL; + hid_t sid1 = H5I_INVALID_HID; + hid_t mem_space = H5I_INVALID_HID; + void * region_buf = NULL; int blkndx; int jndx; int ret_value = SUCCEED; @@ -2306,7 +2343,7 @@ render_bin_output_region_data_blocks } /* Allocate space for the dimension array */ - if (NULL == (dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims))) { + if (NULL == (dims1 = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims))) { ret_value = FAIL; goto done; } @@ -2314,7 +2351,7 @@ render_bin_output_region_data_blocks /* Find the dimensions of each data space from the block coordinates */ for (jndx = 0, numelem = 1; jndx < ndims; jndx++) { dims1[jndx] = ptdata[jndx + ndims] - ptdata[jndx] + 1; - numelem = dims1[jndx] * numelem; + numelem = dims1[jndx] * numelem; } /* Create dataspace for reading buffer */ @@ -2335,12 +2372,12 @@ render_bin_output_region_data_blocks /* Select (x , x , ..., x ) x (y , y , ..., y ) hyperslab for reading memory dataset */ /* 1 2 n 1 2 n */ - if (NULL == (start = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims))) { + if (NULL == (start = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims))) { ret_value = FAIL; goto done; } - if (NULL == (count = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims))) { + if (NULL == (count = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims))) { ret_value = FAIL; goto done; } @@ -2403,16 +2440,15 @@ done: *------------------------------------------------------------------------- */ static int -render_bin_output_region_blocks - (FILE *stream, hid_t region_space, hid_t region_id, hid_t container) +render_bin_output_region_blocks(FILE *stream, hid_t region_space, hid_t region_id, hid_t container) { - hssize_t nblocks; - hsize_t alloc_size; - hsize_t *ptdata = NULL; - hid_t dtype = H5I_INVALID_HID; - hid_t type_id = H5I_INVALID_HID; - int ndims; - int ret_value = SUCCEED; + hssize_t nblocks; + hsize_t alloc_size; + hsize_t *ptdata = NULL; + hid_t dtype = H5I_INVALID_HID; + hid_t type_id = H5I_INVALID_HID; + int ndims; + int ret_value = SUCCEED; if ((nblocks = H5Sget_select_hyper_nblocks(region_space)) < 0) { ret_value = FAIL; @@ -2428,7 +2464,7 @@ render_bin_output_region_blocks alloc_size = (hsize_t)nblocks * (hsize_t)ndims * 2 * (hsize_t)sizeof(ptdata[0]); - if (NULL == (ptdata = (hsize_t *) HDmalloc((size_t)alloc_size))) { + if (NULL == (ptdata = (hsize_t *)HDmalloc((size_t)alloc_size))) { ret_value = FAIL; goto done; } @@ -2448,8 +2484,8 @@ render_bin_output_region_blocks goto done; } - if (render_bin_output_region_data_blocks(stream, region_id, container, - ndims, type_id, nblocks, ptdata) < 0) { + if (render_bin_output_region_data_blocks(stream, region_id, container, ndims, type_id, nblocks, + ptdata) < 0) { ret_value = FAIL; goto done; } @@ -2478,15 +2514,14 @@ done: *------------------------------------------------------------------------- */ static int -render_bin_output_region_data_points - (FILE *stream, hid_t region_space, hid_t region_id, - hid_t container, int ndims, hid_t type_id, hssize_t npoints, hsize_t *ptdata) +render_bin_output_region_data_points(FILE *stream, hid_t region_space, hid_t region_id, hid_t container, + int ndims, hid_t type_id, hssize_t npoints, hsize_t *ptdata) { hsize_t *dims1 = NULL; size_t type_size; - hid_t mem_space = H5I_INVALID_HID; - void *region_buf = NULL; - int ret_value = SUCCEED; + hid_t mem_space = H5I_INVALID_HID; + void * region_buf = NULL; + int ret_value = SUCCEED; UNUSED(ptdata); @@ -2501,7 +2536,7 @@ render_bin_output_region_data_points } /* Allocate space for the dimension array */ - if (NULL == (dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * (size_t)ndims))) { + if (NULL == (dims1 = (hsize_t *)HDmalloc(sizeof(hsize_t) * (size_t)ndims))) { ret_value = FAIL; goto done; } @@ -2551,16 +2586,15 @@ done: *------------------------------------------------------------------------- */ static int -render_bin_output_region_points - (FILE *stream, hid_t region_space, hid_t region_id, hid_t container) +render_bin_output_region_points(FILE *stream, hid_t region_space, hid_t region_id, hid_t container) { - hssize_t npoints; - hsize_t alloc_size; - hsize_t *ptdata = NULL; - hid_t dtype = H5I_INVALID_HID; - hid_t type_id = H5I_INVALID_HID; - int ndims; - int ret_value = SUCCEED; + hssize_t npoints; + hsize_t alloc_size; + hsize_t *ptdata = NULL; + hid_t dtype = H5I_INVALID_HID; + hid_t type_id = H5I_INVALID_HID; + int ndims; + int ret_value = SUCCEED; if ((npoints = H5Sget_select_elem_npoints(region_space)) < 0) { ret_value = FAIL; @@ -2576,7 +2610,7 @@ render_bin_output_region_points alloc_size = (hsize_t)npoints * (hsize_t)ndims * (hsize_t)sizeof(ptdata[0]); - if (NULL == (ptdata = (hsize_t *) HDmalloc((size_t)alloc_size))) { + if (NULL == (ptdata = (hsize_t *)HDmalloc((size_t)alloc_size))) { ret_value = FAIL; goto done; } @@ -2596,8 +2630,8 @@ render_bin_output_region_points goto done; } - if (render_bin_output_region_data_points(stream, region_space, region_id, - container, ndims, type_id, npoints, ptdata) < 0) { + if (render_bin_output_region_data_points(stream, region_space, region_id, container, ndims, type_id, + npoints, ptdata) < 0) { ret_value = FAIL; goto done; } @@ -2614,9 +2648,111 @@ done: return ret_value; } /* end render_bin_output_region_points */ +/*------------------------------------------------------------------------- + * Purpose: Print some values from an attribute referenced by object reference. + * + * Parameters Description: + * FILE *buffer is the string into which to render + *------------------------------------------------------------------------- + */ +static int +h5str_dump_region_attribute(JNIEnv *env, h5str_t *str, hid_t region_id) +{ + int ret_value = SUCCEED; + hid_t atype = H5I_INVALID_HID; + hid_t type_id = H5I_INVALID_HID; + hid_t region_space = H5I_INVALID_HID; + hsize_t total_size[H5S_MAX_RANK]; /* total size of dataset*/ + size_t i; /* counter */ + size_t size; /* datum size */ + int sndims; /* rank of dataspace */ + hsize_t p_nelmts; /* total selected elmts */ + hsize_t alloc_size; + + unsigned char *buf = NULL; /* buffer for raw data */ + + /* VL data special information */ + unsigned int vl_data = 0; /* contains VL datatypes */ + + if ((region_space = H5Aget_space(region_id)) < 0) { + ret_value = FAIL; + goto done; + } + + if ((sndims = H5Sget_simple_extent_ndims(region_space)) < 0) { + ret_value = FAIL; + goto done; + } + + /* Assume entire data space to be read */ + H5Sget_simple_extent_dims(region_space, total_size, NULL); + p_nelmts = 1; + + for (i = 0; i < sndims; i++) + p_nelmts *= total_size[i]; + + if ((atype = H5Aget_type(region_id)) < 0) { + ret_value = FAIL; + goto done; + } + if ((type_id = H5Tget_native_type(atype, H5T_DIR_DEFAULT)) < 0) { + ret_value = FAIL; + goto done; + } + + /* Check if we have VL data in the dataset's datatype */ + if (h5str_detect_vlen(type_id) == TRUE) + vl_data = TRUE; + + if (!(size = H5Tget_size(type_id))) { + ret_value = FAIL; + goto done; + } + + alloc_size = p_nelmts * size; + HDassert(alloc_size == (hsize_t)((size_t)alloc_size)); /*check for overflow*/ + if (NULL != (buf = (unsigned char *)HDmalloc((size_t)alloc_size))) { + /* Read the data */ + if (H5Aread(region_id, type_id, buf) >= 0) { + + for (i = 0; i < p_nelmts; i++) { + size_t bytes_in = 0; /* # of bytes to write */ + void * memref = buf + i * size; + + if (!(bytes_in = h5str_sprintf(ENVONLY, str, region_id, type_id, memref, 1))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + if ((i < p_nelmts - 1) && (bytes_in > 0)) { + if (!h5str_append(str, ", ")) + H5_ASSERTION_ERROR(ENVONLY, "Unable to append string."); + } + } + + /* Reclaim any VL memory, if necessary */ + if (vl_data) { + if (H5Treclaim(type_id, region_space, H5P_DEFAULT, buf) < 0) + H5_LIBRARY_ERROR(ENVONLY); + } + } + else + H5_LIBRARY_ERROR(ENVONLY); + } + +done: + if (buf) + HDfree(buf); + if (region_space >= 0) + H5Sclose(region_space); + if (type_id >= 0) + H5Tclose(type_id); + if (atype >= 0) + H5Tclose(type_id); + + return ret_value; +} + int -h5str_dump_simple_dset - (JNIEnv *env, FILE *stream, hid_t dset, int binary_order) +h5str_dump_simple_dset(JNIEnv *env, FILE *stream, hid_t dset, int binary_order) { hsize_t elmtno; /* counter */ hsize_t zero[8]; /* vector of zeros */ @@ -2624,18 +2760,18 @@ h5str_dump_simple_dset size_t i; /* counter */ hid_t f_space = H5I_INVALID_HID; /* file data space */ int ndims; - int carry; /* counter carry value */ + int carry; /* counter carry value */ /* Print info */ hsize_t p_nelmts; /* total selected elmts */ size_t p_type_nbytes; /* size of memory type */ /* Stripmine info */ - unsigned char *sm_buf = NULL; /* buffer for raw data */ - hsize_t sm_size[H5S_MAX_RANK]; /* stripmine size */ - hsize_t sm_nbytes; /* bytes per stripmine */ - hsize_t sm_nelmts; /* elements per stripmine */ - hid_t sm_space = H5I_INVALID_HID; /* stripmine data space */ + void * sm_buf = NULL; /* buffer for raw data */ + hsize_t sm_size[H5S_MAX_RANK]; /* stripmine size */ + hsize_t sm_nbytes; /* bytes per stripmine */ + hsize_t sm_nelmts; /* elements per stripmine */ + hid_t sm_space = H5I_INVALID_HID; /* stripmine data space */ /* Hyperslab info */ hsize_t hs_offset[H5S_MAX_RANK]; /* starting offset */ @@ -2644,8 +2780,8 @@ h5str_dump_simple_dset /* VL data special information */ unsigned int vl_data = 0; /* contains VL datatypes */ - hid_t p_type = H5I_INVALID_HID; - hid_t f_type = H5I_INVALID_HID; + hid_t p_type = H5I_INVALID_HID; + hid_t f_type = H5I_INVALID_HID; int ret_value = FAIL; @@ -2655,144 +2791,168 @@ h5str_dump_simple_dset if ((f_type = H5Dget_type(dset)) < 0) H5_LIBRARY_ERROR(ENVONLY); - switch (binary_order) { - case 1: - { - if ((p_type = h5str_get_native_type(f_type)) < 0) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + if ((f_space = H5Dget_space(dset)) < 0) + H5_LIBRARY_ERROR(ENVONLY); - break; - } + if ((ndims = H5Sget_simple_extent_ndims(f_space)) < 0) + H5_LIBRARY_ERROR(ENVONLY); - case 2: - { - if ((p_type = h5str_get_little_endian_type(f_type)) < 0) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + if (H5Sget_simple_extent_dims(f_space, total_size, NULL) < 0) + H5_LIBRARY_ERROR(ENVONLY); - break; - } + if (H5Tequal(f_type, H5T_STD_REF_DSETREG)) { + p_nelmts = H5Sget_simple_extent_npoints(f_space); + if (NULL == + (sm_buf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), (size_t)p_nelmts))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_simple_mem: failed to allocate sm_buf"); - case 3: - { - if ((p_type = h5str_get_big_endian_type(f_type)) < 0) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + /* Read the data */ + if (H5Dread(dset, H5T_STD_REF, H5S_ALL, H5S_ALL, H5P_DEFAULT, sm_buf) < 0) + H5_LIBRARY_ERROR(ENVONLY); - break; + if (binary_order == 99) { + if (h5str_dump_simple_data(ENVONLY, stream, dset, H5T_STD_REF, sm_buf, p_nelmts) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); } - - default: - { - if ((p_type = H5Tcopy(f_type)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - break; + else { + if (h5str_render_bin_output(stream, dset, H5T_STD_REF, sm_buf, p_nelmts) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); } } + else { + switch (binary_order) { + case 1: { + if ((p_type = h5str_get_native_type(f_type)) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - if ((f_space = H5Dget_space(dset)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - if ((ndims = H5Sget_simple_extent_ndims(f_space)) < 0) - H5_LIBRARY_ERROR(ENVONLY); + break; + } - if ((size_t)ndims <= (sizeof(sm_size) / sizeof(sm_size[0]))) { - if (H5Sget_simple_extent_dims(f_space, total_size, NULL) < 0) - H5_LIBRARY_ERROR(ENVONLY); + case 2: { + if ((p_type = h5str_get_little_endian_type(f_type)) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - /* Calculate the number of elements we're going to print */ - p_nelmts = 1; + break; + } - if (ndims > 0) { - for (i = 0; i < (size_t) ndims; i++) - p_nelmts *= total_size[i]; - } /* end if */ + case 3: { + if ((p_type = h5str_get_big_endian_type(f_type)) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - if (p_nelmts > 0) { - /* Check if we have VL data in the dataset's datatype */ - if (h5str_detect_vlen(p_type) != 0) - vl_data = 1; + break; + } - /* - * Determine the strip mine size and allocate a buffer. The strip mine is - * a hyperslab whose size is manageable. - */ - if (!(sm_nbytes = p_type_nbytes = H5Tget_size(p_type))) - H5_LIBRARY_ERROR(ENVONLY); + default: { + if ((p_type = H5Tcopy(f_type)) < 0) + H5_LIBRARY_ERROR(ENVONLY); - if (ndims > 0) { - for (i = (size_t)ndims; i > 0; --i) { - hsize_t size = H5TOOLS_BUFSIZE / sm_nbytes; - if ( size == 0 ) /* datum size > H5TOOLS_BUFSIZE */ - size = 1; - sm_size[i - 1] = (((total_size[i - 1]) < (size)) ? (total_size[i - 1]) : (size)); - sm_nbytes *= sm_size[i - 1]; - } + break; } + } - if (sm_nbytes > 0) { - if (NULL == (sm_buf = (unsigned char *) HDmalloc((size_t)sm_nbytes))) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_dset: failed to allocate sm_buf"); + if ((size_t)ndims <= (sizeof(sm_size) / sizeof(sm_size[0]))) { + if (H5Sget_simple_extent_dims(f_space, total_size, NULL) < 0) + H5_LIBRARY_ERROR(ENVONLY); - sm_nelmts = sm_nbytes / p_type_nbytes; + /* Calculate the number of elements we're going to print */ + p_nelmts = 1; - if ((sm_space = H5Screate_simple(1, &sm_nelmts, NULL)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - - /* The stripmine loop */ - HDmemset(hs_offset, 0, sizeof hs_offset); - HDmemset(zero, 0, sizeof zero); + if (ndims > 0) { + for (i = 0; i < (size_t)ndims; i++) + p_nelmts *= total_size[i]; + } /* end if */ - for (elmtno = 0; elmtno < p_nelmts; elmtno += hs_nelmts) { - /* Calculate the hyperslab size */ - if (ndims > 0) { - for (i = 0, hs_nelmts = 1; i < (size_t) ndims; i++) { - hs_size[i] = (((total_size[i] - hs_offset[i]) < (sm_size[i])) ? (total_size[i] - hs_offset[i]) : (sm_size[i])); - hs_nelmts *= hs_size[i]; - } + if (p_nelmts > 0) { + /* Check if we have VL data in the dataset's datatype */ + if (h5str_detect_vlen(p_type) != 0) + vl_data = 1; - if (H5Sselect_hyperslab(f_space, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL) < 0) - H5_LIBRARY_ERROR(ENVONLY); + /* + * Determine the strip mine size and allocate a buffer. The strip mine is + * a hyperslab whose size is manageable. + */ + if (!(sm_nbytes = p_type_nbytes = H5Tget_size(p_type))) + H5_LIBRARY_ERROR(ENVONLY); - if (H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL, &hs_nelmts, NULL) < 0) - H5_LIBRARY_ERROR(ENVONLY); + if (ndims > 0) { + for (i = (size_t)ndims; i > 0; --i) { + hsize_t size = H5TOOLS_BUFSIZE / sm_nbytes; + if (size == 0) /* datum size > H5TOOLS_BUFSIZE */ + size = 1; + sm_size[i - 1] = (((total_size[i - 1]) < (size)) ? (total_size[i - 1]) : (size)); + sm_nbytes *= sm_size[i - 1]; } - else { - if (H5Sselect_all(f_space) < 0) - H5_LIBRARY_ERROR(ENVONLY); + } - if (H5Sselect_all(sm_space) < 0) - H5_LIBRARY_ERROR(ENVONLY); + if (sm_nbytes > 0) { + if (NULL == (sm_buf = (unsigned char *)HDmalloc((size_t)sm_nbytes))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_simple_dset: failed to allocate sm_buf"); - hs_nelmts = 1; - } + sm_nelmts = sm_nbytes / p_type_nbytes; - /* Read the data */ - if (H5Dread(dset, p_type, sm_space, f_space, H5P_DEFAULT, sm_buf) < 0) + if ((sm_space = H5Screate_simple(1, &sm_nelmts, NULL)) < 0) H5_LIBRARY_ERROR(ENVONLY); - if (binary_order == 99) { - if (h5tools_dump_simple_data(ENVONLY, stream, dset, p_type, sm_buf, hs_nelmts) < 0) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } - else { - if (h5str_render_bin_output(stream, dset, p_type, sm_buf, hs_nelmts) < 0) - CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - } + /* The stripmine loop */ + HDmemset(hs_offset, 0, sizeof hs_offset); + HDmemset(zero, 0, sizeof zero); + + for (elmtno = 0; elmtno < p_nelmts; elmtno += hs_nelmts) { + /* Calculate the hyperslab size */ + if (ndims > 0) { + for (i = 0, hs_nelmts = 1; i < (size_t)ndims; i++) { + hs_size[i] = (((total_size[i] - hs_offset[i]) < (sm_size[i])) + ? (total_size[i] - hs_offset[i]) + : (sm_size[i])); + hs_nelmts *= hs_size[i]; + } + + if (H5Sselect_hyperslab(f_space, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL) < + 0) + H5_LIBRARY_ERROR(ENVONLY); + + if (H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL, &hs_nelmts, NULL) < + 0) + H5_LIBRARY_ERROR(ENVONLY); + } + else { + if (H5Sselect_all(f_space) < 0) + H5_LIBRARY_ERROR(ENVONLY); - /* Reclaim any VL memory, if necessary */ - if (vl_data) { - if (H5Dvlen_reclaim(p_type, sm_space, H5P_DEFAULT, sm_buf) < 0) + if (H5Sselect_all(sm_space) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + hs_nelmts = 1; + } + + /* Read the data */ + if (H5Dread(dset, p_type, sm_space, f_space, H5P_DEFAULT, sm_buf) < 0) H5_LIBRARY_ERROR(ENVONLY); - } - /* Calculate the next hyperslab offset */ - for (i = (size_t)ndims, carry = 1; i > 0 && carry; --i) { - hs_offset[i - 1] += hs_size[i - 1]; + if (binary_order == 99) { + if (h5str_dump_simple_data(ENVONLY, stream, dset, p_type, sm_buf, hs_nelmts) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + } + else { + if (h5str_render_bin_output(stream, dset, p_type, sm_buf, hs_nelmts) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + } - if (hs_offset[i - 1] == total_size[i - 1]) - hs_offset[i - 1] = 0; - else - carry = 0; + /* Reclaim any VL memory, if necessary */ + if (vl_data) { + if (H5Treclaim(p_type, sm_space, H5P_DEFAULT, sm_buf) < 0) + H5_LIBRARY_ERROR(ENVONLY); + } + + /* Calculate the next hyperslab offset */ + for (i = (size_t)ndims, carry = 1; i > 0 && carry; --i) { + hs_offset[i - 1] += hs_size[i - 1]; + + if (hs_offset[i - 1] == total_size[i - 1]) + hs_offset[i - 1] = 0; + else + carry = 0; + } } } } @@ -2816,24 +2976,167 @@ done: return ret_value; } /* end h5str_dump_simple_dset */ +int +h5str_dump_simple_mem(JNIEnv *env, FILE *stream, hid_t attr_id, int binary_order) +{ + hid_t f_space = H5I_INVALID_HID; /* file data space */ + hsize_t alloc_size; + int ndims; /* rank of dataspace */ + unsigned i; /* counters */ + hsize_t total_size[H5S_MAX_RANK]; /* total size of dataset*/ + hsize_t p_nelmts; /* total selected elmts */ + + void * sm_buf = NULL; /* buffer for raw data */ + hsize_t sm_size[H5S_MAX_RANK]; /* stripmine size */ + + int ret_value = 0; + + /* VL data special information */ + unsigned int vl_data = 0; /* contains VL datatypes */ + hid_t p_type = H5I_INVALID_HID; + hid_t f_type = H5I_INVALID_HID; + + if (attr_id < 0) + H5_BAD_ARGUMENT_ERROR(ENVONLY, "h5str_dump_simple_mem: attr ID < 0"); + + if ((f_type = H5Aget_type(attr_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + if (H5I_INVALID_HID == (f_space = H5Aget_space(attr_id))) + H5_LIBRARY_ERROR(ENVONLY); + + if ((ndims = H5Sget_simple_extent_ndims(f_space)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + if (H5Sget_simple_extent_dims(f_space, total_size, NULL) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + if (H5Tequal(f_type, H5T_STD_REF_DSETREG)) { + p_nelmts = H5Sget_simple_extent_npoints(f_space); + if (NULL == + (sm_buf = (H5R_ref_t *)HDcalloc(MAX(sizeof(unsigned), sizeof(H5R_ref_t)), (size_t)p_nelmts))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_simple_mem: failed to allocate sm_buf"); + + /* Read the data */ + if (H5Aread(attr_id, H5T_STD_REF, sm_buf) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + if (binary_order == 99) { + if (h5str_dump_simple_data(ENVONLY, stream, attr_id, H5T_STD_REF, sm_buf, p_nelmts) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + } + else { + if (h5str_render_bin_output(stream, attr_id, H5T_STD_REF, sm_buf, p_nelmts) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + } + } + else { + switch (binary_order) { + case 1: { + if ((p_type = h5str_get_native_type(f_type)) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + break; + } + + case 2: { + if ((p_type = h5str_get_little_endian_type(f_type)) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + break; + } + + case 3: { + if ((p_type = h5str_get_big_endian_type(f_type)) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + break; + } + + default: { + if ((p_type = H5Tcopy(f_type)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + break; + } + } + + if ((size_t)ndims <= (sizeof(sm_size) / sizeof(sm_size[0]))) { + if (H5Sget_simple_extent_dims(f_space, total_size, NULL) < 0) + H5_LIBRARY_ERROR(ENVONLY); + /* Calculate the number of elements we're going to print */ + p_nelmts = 1; + + if (ndims > 0) { + for (i = 0; i < (size_t)ndims; i++) + p_nelmts *= total_size[i]; + } /* end if */ + + if (p_nelmts > 0) { + /* Check if we have VL data in the dataset's datatype */ + if (h5str_detect_vlen(p_type) != 0) + vl_data = 1; + + alloc_size = p_nelmts * H5Tget_size(p_type); + if (NULL == (sm_buf = (unsigned char *)HDmalloc((size_t)alloc_size))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_simple_mem: failed to allocate sm_buf"); + + /* Read the data */ + if (H5Aread(attr_id, p_type, sm_buf) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + if (binary_order == 99) { + if (h5str_dump_simple_data(ENVONLY, stream, attr_id, p_type, sm_buf, p_nelmts) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + } + else { + if (h5str_render_bin_output(stream, attr_id, p_type, sm_buf, p_nelmts) < 0) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + } + + /* Reclaim any VL memory, if necessary */ + if (vl_data) { + if (H5Treclaim(p_type, f_space, H5P_DEFAULT, sm_buf) < 0) + H5_LIBRARY_ERROR(ENVONLY); + } + } + } + } + + ret_value = SUCCEED; + +done: + if (sm_buf) + HDfree(sm_buf); + if (f_space >= 0) + H5Sclose(f_space); + if (p_type >= 0) + H5Tclose(p_type); + if (f_type >= 0) + H5Tclose(f_type); + + return ret_value; +} + htri_t -H5Tdetect_variable_str(hid_t tid) { +H5Tdetect_variable_str(hid_t tid) +{ htri_t ret_val = 0; if (H5Tget_class(tid) == H5T_COMPOUND) { unsigned i; unsigned nm = (unsigned)H5Tget_nmembers(tid); - for(i = 0; i < nm; i++) { + for (i = 0; i < nm; i++) { htri_t status = 0; - hid_t mtid = 0; - if((mtid = H5Tget_member_type(tid, i)) < 0) + hid_t mtid = 0; + if ((mtid = H5Tget_member_type(tid, i)) < 0) return FAIL; /* exit immediately on error */ - if((status = H5Tdetect_variable_str(mtid)) < 0) + if ((status = H5Tdetect_variable_str(mtid)) < 0) return status; /* exit immediately on error */ ret_val |= status; - H5Tclose (mtid); + H5Tclose(mtid); } /* end for */ - } /* end if */ + } /* end if */ else ret_val = H5Tis_variable_str(tid); @@ -2841,8 +3144,7 @@ H5Tdetect_variable_str(hid_t tid) { } /* end H5Tdetect_variable_str */ static int -h5tools_dump_simple_data - (JNIEnv *env, FILE *stream, hid_t container, hid_t type, void *_mem, hsize_t nelmts) +h5str_dump_simple_data(JNIEnv *env, FILE *stream, hid_t container, hid_t type, void *_mem, hsize_t nelmts) { unsigned char *mem = (unsigned char *)_mem; h5str_t buffer; /* string into which to render */ @@ -2855,45 +3157,44 @@ h5tools_dump_simple_data H5_LIBRARY_ERROR(ENVONLY); for (i = 0, line_count = 0; i < nelmts; i++, line_count++) { - size_t bytes_in = 0; /* # of bytes to write */ - void *memref = mem + i * size; + size_t bytes_in = 0; /* # of bytes to write */ + void * memref = mem + i * size; /* Render the data element*/ h5str_new(&buffer, 32 * size); if (!buffer.s) - H5_JNI_FATAL_ERROR(ENVONLY, "h5tools_dump_simple_data: failed to allocate buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "h5str_dump_simple_data: failed to allocate buffer"); - if (!(bytes_in = h5str_sprintf(ENVONLY, &buffer, container, type, memref, 0, 1))) + if (!(bytes_in = h5str_sprintf(ENVONLY, &buffer, container, type, memref, 1))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - if (i > 0) { + if ((i > 0) && (bytes_in > 0)) { if (HDfprintf(stream, ", ") < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5tools_dump_simple_data: HDfprintf failure"); + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_data: HDfprintf failure"); if (line_count >= H5TOOLS_TEXT_BLOCK) { line_count = 0; if (HDfprintf(stream, "\n") < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5tools_dump_simple_data: HDfprintf failure"); + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_data: HDfprintf failure"); } } - if (HDfprintf(stream, "%s", buffer.s) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5tools_dump_simple_data: HDfprintf failure"); + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_data: HDfprintf failure"); h5str_free(&buffer); } /* end for (i = 0; i < nelmts... */ if (HDfprintf(stream, "\n") < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5tools_dump_simple_data: HDfprintf failure"); + H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_data: HDfprintf failure"); done: if (buffer.s) h5str_free(&buffer); return ret_value; -} /* end h5tools_dump_simple_data */ +} /* end h5str_dump_simple_data */ /* * Utility Java APIs @@ -2906,17 +3207,17 @@ done: * Signature: (JJ[Ljava/lang/String;)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5AreadComplex -(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, jobjectArray buf) +Java_hdf_hdf5lib_H5_H5AreadComplex(JNIEnv *env, jclass clss, jlong attr_id, jlong mem_type_id, + jobjectArray buf) { - h5str_t h5str; - jstring jstr; - size_t size; - size_t i; - hid_t p_type = H5I_INVALID_HID; - jsize n; - char *readBuf = NULL; - herr_t status = FAIL; + h5str_t h5str; + jstring jstr; + size_t size; + size_t i; + hid_t p_type = H5I_INVALID_HID; + jsize n; + char * readBuf = NULL; + herr_t status = FAIL; UNUSED(clss); @@ -2925,15 +3226,16 @@ Java_hdf_hdf5lib_H5_H5AreadComplex if ((p_type = H5Tget_native_type(mem_type_id, H5T_DIR_DEFAULT)) < 0) H5_LIBRARY_ERROR(ENVONLY); - size = (((H5Tget_size(mem_type_id))>(H5Tget_size(p_type))) ? (H5Tget_size(mem_type_id)) : (H5Tget_size(p_type))); + size = (((H5Tget_size(mem_type_id)) > (H5Tget_size(p_type))) ? (H5Tget_size(mem_type_id)) + : (H5Tget_size(p_type))); if ((n = ENVPTR->GetArrayLength(ENVONLY, buf)) <= 0) { CHECK_JNI_EXCEPTION(ENVONLY, JNI_TRUE); H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5AreadComplex: read buffer length <= 0"); } - if (NULL == (readBuf = (char *) HDmalloc((size_t)n * size))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5AreadComplex: failed to allocate read buffer"); + if (NULL == (readBuf = (char *)HDmalloc((size_t)n * size))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5AreadComplex: failed to allocate read buffer"); if ((status = H5Aread(attr_id, mem_type_id, readBuf)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -2941,18 +3243,18 @@ Java_hdf_hdf5lib_H5_H5AreadComplex h5str_new(&h5str, 4 * size); if (!h5str.s) - H5_JNI_FATAL_ERROR(ENVONLY, "H5AreadComplex: failed to allocate string buffer"); + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5AreadComplex: failed to allocate string buffer"); - for (i = 0; i < (size_t) n; i++) { + for (i = 0; i < (size_t)n; i++) { h5str.s[0] = '\0'; - if (!h5str_sprintf(ENVONLY, &h5str, attr_id, mem_type_id, readBuf + (i * size), 0, 0)) + if (!h5str_sprintf(ENVONLY, &h5str, attr_id, mem_type_id, readBuf + (i * size), 0)) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); if (NULL == (jstr = ENVPTR->NewStringUTF(ENVONLY, h5str.s))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); - ENVPTR->SetObjectArrayElement(ENVONLY, buf, (jsize) i, jstr); + ENVPTR->SetObjectArrayElement(ENVONLY, buf, (jsize)i, jstr); CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); ENVPTR->DeleteLocalRef(ENVONLY, jstr); @@ -2976,16 +3278,15 @@ done: * Signature: (JJ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Acopy - (JNIEnv *env, jclass clss, jlong src_id, jlong dst_id) +Java_hdf_hdf5lib_H5_H5Acopy(JNIEnv *env, jclass clss, jlong src_id, jlong dst_id) { - hssize_t npoints; - hsize_t total_size = 0; - size_t type_size; - jbyte *buf = NULL; - hid_t tid = H5I_INVALID_HID; - hid_t sid = H5I_INVALID_HID; - herr_t retVal = FAIL; + hssize_t npoints; + hsize_t total_size = 0; + size_t type_size; + jbyte * buf = NULL; + hid_t tid = H5I_INVALID_HID; + hid_t sid = H5I_INVALID_HID; + herr_t retVal = FAIL; UNUSED(clss); @@ -3001,8 +3302,8 @@ Java_hdf_hdf5lib_H5_H5Acopy H5_LIBRARY_ERROR(ENVONLY); total_size = (hsize_t)npoints * (hsize_t)type_size; - if (NULL == (buf = (jbyte *) HDmalloc((size_t)total_size * sizeof(jbyte)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Acopy: failed to allocate buffer"); + if (NULL == (buf = (jbyte *)HDmalloc((size_t)total_size * sizeof(jbyte)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Acopy: failed to allocate buffer"); if ((retVal = H5Aread((hid_t)src_id, tid, buf)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -3035,21 +3336,20 @@ done: * Signature: (JJ)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dcopy - (JNIEnv *env, jclass clss, jlong src_id, jlong dst_id) +Java_hdf_hdf5lib_H5_H5Dcopy(JNIEnv *env, jclass clss, jlong src_id, jlong dst_id) { - hssize_t npoints; - hsize_t total_size = 0, total_allocated_size; - size_t type_size; - jbyte *buf = NULL; - hid_t tid = H5I_INVALID_HID; - hid_t sid = H5I_INVALID_HID; - herr_t retVal = FAIL; + hssize_t npoints; + hsize_t total_size = 0, total_allocated_size; + size_t type_size; + jbyte * buf = NULL; + hid_t tid = H5I_INVALID_HID; + hid_t sid = H5I_INVALID_HID; + herr_t retVal = FAIL; UNUSED(clss); if (!(total_allocated_size = H5Dget_storage_size((hid_t)src_id))) - return 0; // nothing to write + return 0; /* nothing to write */ if ((sid = H5Dget_space((hid_t)src_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -3063,8 +3363,8 @@ Java_hdf_hdf5lib_H5_H5Dcopy H5_LIBRARY_ERROR(ENVONLY); total_size = (hsize_t)npoints * (hsize_t)type_size; - if (NULL == (buf = (jbyte *) HDmalloc((size_t)total_size * sizeof(jbyte)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Dcopy: failed to allocate buffer"); + if (NULL == (buf = (jbyte *)HDmalloc((size_t)total_size * sizeof(jbyte)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Dcopy: failed to allocate buffer"); if ((retVal = H5Dread((hid_t)src_id, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -3091,40 +3391,40 @@ done: } /* end Java_hdf_hdf5lib_H5_H5Dcopy */ /* -///////////////////////////////////////////////////////////////////////////////// -// -// -// Add these methods so that we don't need to call H5Gget_objtype_by_idx -// in a loop to get information for all the objects in a group, which takes -// a lot of time to finish if the number of objects is more than 10,000 -// -///////////////////////////////////////////////////////////////////////////////// -*/ + * ///////////////////////////////////////////////////////////////////////////////// + * // + * // + * // Add these methods so that we don't need to call H5Gget_objtype_by_idx + * // in a loop to get information for all the objects in a group, which takes + * // a lot of time to finish if the number of objects is more than 10,000 + * // + * ///////////////////////////////////////////////////////////////////////////////// + */ #ifdef __cplusplus - herr_t obj_info_all(hid_t g_id, const char *name, const H5L_info_t *linfo, void *op_data); - herr_t obj_info_max(hid_t g_id, const char *name, const H5L_info_t *linfo, void *op_data); - int H5Gget_obj_info_max(hid_t, char **, int *, int *, unsigned long *, long); - int H5Gget_obj_info_full( hid_t loc_id, char **objname, int *otype, int *ltype, unsigned long *fno, unsigned long *objno, int indexType, int indexOrder); +herr_t obj_info_all(hid_t g_id, const char *name, const H5L_info2_t *linfo, void *op_data); +herr_t obj_info_max(hid_t g_id, const char *name, const H5L_info2_t *linfo, void *op_data); +int H5Gget_obj_info_max(hid_t, char **, int *, int *, H5O_token_t *, long); +int H5Gget_obj_info_full(hid_t loc_id, char **objname, int *otype, int *ltype, unsigned long *fno, + H5O_token_t *obj_token, int indexType, int indexOrder); #else - static herr_t obj_info_all(hid_t g_id, const char *name, const H5L_info_t *linfo, void *op_data); - static herr_t obj_info_max(hid_t g_id, const char *name, const H5L_info_t *linfo, void *op_data); - static int H5Gget_obj_info_max(hid_t, char **, int *, int *, unsigned long *, long); - static int H5Gget_obj_info_full( hid_t loc_id, char **objname, int *otype, int *ltype, unsigned long *fno, unsigned long *objno, int indexType, int indexOrder); +static herr_t obj_info_all(hid_t g_id, const char *name, const H5L_info2_t *linfo, void *op_data); +static herr_t obj_info_max(hid_t g_id, const char *name, const H5L_info2_t *linfo, void *op_data); +static int H5Gget_obj_info_max(hid_t, char **, int *, int *, H5O_token_t *, long); +static int H5Gget_obj_info_full(hid_t loc_id, char **objname, int *otype, int *ltype, unsigned long *fno, + H5O_token_t *obj_token, int indexType, int indexOrder); #endif -typedef struct info_all -{ - char **objname; - int *otype; - int *ltype; - unsigned long *objno; +typedef struct info_all { + char ** objname; + int * otype; + int * ltype; + H5O_token_t * obj_token; unsigned long *fno; - unsigned long idxnum; - int count; + unsigned long idxnum; + int count; } info_all_t; - /* * Class: hdf_hdf5lib_H5 * Method: H5Gget_obj_info_full @@ -3136,26 +3436,26 @@ typedef struct info_all * end up overwriting memory heap-tracking info. */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1full - (JNIEnv *env, jclass clss, jlong loc_id, jstring group_name, - jobjectArray objName, jintArray oType, jintArray lType, jlongArray fNo, - jlongArray oRef, jint n, jint indx_type, jint indx_order) +Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1full(JNIEnv *env, jclass clss, jlong loc_id, jstring group_name, + jobjectArray objName, jintArray oType, jintArray lType, + jlongArray fNo, jobjectArray oToken, jint n, jint indx_type, + jint indx_order) { - unsigned long *refs = NULL; - unsigned long *fnos = NULL; - const char *gName = NULL; - char **oName = NULL; - jboolean isCopy; - jstring str; - jint *otarr = NULL; - jint *ltarr = NULL; - jlong *refP = NULL; - jlong *fnoP = NULL; - hid_t gid = (hid_t)loc_id; - int i; - int indexType = indx_type; - int indexOrder = indx_order; - herr_t ret_val = FAIL; + unsigned long *fnos = NULL; + H5O_token_t * tokens = NULL; + const char * gName = NULL; + char ** oName = NULL; + jboolean isCopy; + jstring str; + jobject token; + jint * otarr = NULL; + jint * ltarr = NULL; + jlong * fnoP = NULL; + hid_t gid = (hid_t)loc_id; + int i; + int indexType = indx_type; + int indexOrder = indx_order; + herr_t ret_val = FAIL; UNUSED(clss); @@ -3163,24 +3463,24 @@ Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1full H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_full: oType is NULL"); if (NULL == lType) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_full: lType is NULL"); - if (NULL == oRef) - H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_full: oRef is NULL"); + if (NULL == oToken) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_full: oToken is NULL"); if (NULL == fNo) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_full: fNo is NULL"); PIN_INT_ARRAY(ENVONLY, oType, otarr, &isCopy, "H5Gget_obj_info_full: oType not pinned"); PIN_INT_ARRAY(ENVONLY, lType, ltarr, &isCopy, "H5Gget_obj_info_full: lType not pinned"); - PIN_LONG_ARRAY(ENVONLY, oRef, refP, &isCopy, "H5Gget_obj_info_full: oRef not pinned"); PIN_LONG_ARRAY(ENVONLY, fNo, fnoP, &isCopy, "H5Gget_obj_info_full: fNo not pinned"); - if (NULL == (oName = (char **) HDcalloc((size_t)n, sizeof(*oName)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_obj_info_full: failed to allocate buffer for object name"); + if (NULL == (oName = (char **)HDcalloc((size_t)n, sizeof(*oName)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Gget_obj_info_full: failed to allocate buffer for object name"); - if (NULL == (refs = (unsigned long *) HDcalloc((size_t)n, sizeof(unsigned long)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_obj_info_full: failed to allocate buffer for ref. info"); + if (NULL == (tokens = (H5O_token_t *)HDcalloc((size_t)n, sizeof(H5O_token_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Gget_obj_info_full: failed to allocate buffer for object tokens"); - if (NULL == (fnos = (unsigned long *) HDcalloc((size_t)n, sizeof(unsigned long)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_obj_info_full: failed to allocate buffer for file number info"); + if (NULL == (fnos = (unsigned long *)HDcalloc((size_t)n, sizeof(unsigned long)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "H5Gget_obj_info_full: failed to allocate buffer for file number info"); if (group_name) { PIN_JAVA_STRING(ENVONLY, group_name, gName, &isCopy, "H5Gget_obj_info_full: group_name not pinned"); @@ -3189,11 +3489,11 @@ Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1full H5_LIBRARY_ERROR(ENVONLY); } - if ((ret_val = H5Gget_obj_info_full(gid, oName, (int *)otarr, (int *)ltarr, fnos, refs, indexType, indexOrder)) < 0) + if ((ret_val = H5Gget_obj_info_full(gid, oName, (int *)otarr, (int *)ltarr, fnos, tokens, indexType, + indexOrder)) < 0) H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_obj_info_full: retrieval of object info failed"); for (i = 0; i < n; i++) { - refP[i] = (jlong)refs[i]; fnoP[i] = (jlong)fnos[i]; if (oName[i]) { @@ -3205,6 +3505,15 @@ Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1full ENVPTR->DeleteLocalRef(ENVONLY, str); } /* end if */ + + /* Create an H5O_token_t object */ + if (NULL == (token = create_H5O_token_t(ENVONLY, &tokens[i], TRUE))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + ENVPTR->SetObjectArrayElement(ENVONLY, oToken, i, token); + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + ENVPTR->DeleteLocalRef(ENVONLY, token); } done: @@ -3214,14 +3523,12 @@ done: } if (fnos) HDfree(fnos); - if (refs) - HDfree(refs); + if (tokens) + HDfree(tokens); if (oName) h5str_array_free(oName, (size_t)n); if (fnoP) UNPIN_LONG_ARRAY(ENVONLY, fNo, fnoP, (ret_val < 0) ? JNI_ABORT : 0); - if (refP) - UNPIN_LONG_ARRAY(ENVONLY, oRef, refP, (ret_val < 0) ? JNI_ABORT : 0); if (ltarr) UNPIN_INT_ARRAY(ENVONLY, lType, ltarr, (ret_val < 0) ? JNI_ABORT : 0); if (otarr) @@ -3241,19 +3548,19 @@ done: * will most likely end up overwriting memory heap-tracking info. */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1max - (JNIEnv *env, jclass clss, jlong loc_id, jobjectArray objName, - jintArray oType, jintArray lType, jlongArray oRef, jlong maxnum, jint n) +Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1max(JNIEnv *env, jclass clss, jlong loc_id, jobjectArray objName, + jintArray oType, jintArray lType, jobjectArray oToken, + jlong maxnum, jint n) { - unsigned long *refs = NULL; - jboolean isCopy; - jstring str; - jlong *refP = NULL; - char **oName = NULL; - jint *otarr = NULL; - jint *ltarr = NULL; - int i; - herr_t ret_val = FAIL; + H5O_token_t *tokens = NULL; + jboolean isCopy; + jstring str; + jobject token; + char ** oName = NULL; + jint * otarr = NULL; + jint * ltarr = NULL; + int i; + herr_t ret_val = FAIL; UNUSED(clss); @@ -3261,25 +3568,22 @@ Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1max H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_max: oType is NULL"); if (NULL == lType) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_max: lType is NULL"); - if (NULL == oRef) - H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_max: oRef is NULL"); + if (NULL == oToken) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5Gget_obj_info_max: oToken is NULL"); PIN_INT_ARRAY(ENVONLY, oType, otarr, &isCopy, "H5Gget_obj_info_max: oType not pinned"); PIN_INT_ARRAY(ENVONLY, lType, ltarr, &isCopy, "H5Gget_obj_info_max: lType not pinned"); - PIN_LONG_ARRAY(ENVONLY, oRef, refP, &isCopy, "H5Gget_obj_info_max: oRef not pinned"); - if (NULL == (oName = (char **) HDcalloc((size_t)n, sizeof(*oName)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_obj_info_max: failed to allocate buffer for object name"); + if (NULL == (oName = (char **)HDcalloc((size_t)n, sizeof(*oName)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Gget_obj_info_max: failed to allocate buffer for object name"); - if (NULL == (refs = (unsigned long *) HDcalloc((size_t)n, sizeof(unsigned long)))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_obj_info_max: failed to allocate buffer for ref. info"); + if (NULL == (tokens = (H5O_token_t *)HDcalloc((size_t)n, sizeof(H5O_token_t)))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, "H5Gget_obj_info_max: failed to allocate buffer for object tokens"); - if ((ret_val = H5Gget_obj_info_max((hid_t)loc_id, oName, (int *)otarr, (int *)ltarr, refs, maxnum)) < 0) + if ((ret_val = H5Gget_obj_info_max((hid_t)loc_id, oName, (int *)otarr, (int *)ltarr, tokens, maxnum)) < 0) H5_JNI_FATAL_ERROR(ENVONLY, "H5Gget_obj_info_max: retrieval of object info failed"); for (i = 0; i < n; i++) { - refP[i] = (jlong) refs[i]; - if (oName[i]) { if (NULL == (str = ENVPTR->NewStringUTF(ENVONLY, oName[i]))) CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); @@ -3289,15 +3593,22 @@ Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1max ENVPTR->DeleteLocalRef(ENVONLY, str); } + + /* Create an H5O_token_t object */ + if (NULL == (token = create_H5O_token_t(ENVONLY, &tokens[i], TRUE))) + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + ENVPTR->SetObjectArrayElement(ENVONLY, oToken, i, token); + CHECK_JNI_EXCEPTION(ENVONLY, JNI_FALSE); + + ENVPTR->DeleteLocalRef(ENVONLY, token); } /* end for */ done: - if (refs) - HDfree(refs); + if (tokens) + HDfree(tokens); if (oName) h5str_array_free(oName, (size_t)n); - if (refP) - UNPIN_LONG_ARRAY(ENVONLY, oRef, refP, (ret_val < 0) ? JNI_ABORT : 0); if (ltarr) UNPIN_INT_ARRAY(ENVONLY, lType, ltarr, (ret_val < 0) ? JNI_ABORT : 0); if (otarr) @@ -3307,33 +3618,34 @@ done: } /* end Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1max */ int -H5Gget_obj_info_full - (hid_t loc_id, char **objname, int *otype, int *ltype, unsigned long *fno, unsigned long *objno, int indexType, int indexOrder) +H5Gget_obj_info_full(hid_t loc_id, char **objname, int *otype, int *ltype, unsigned long *fno, + H5O_token_t *obj_token, int indexType, int indexOrder) { info_all_t info; - info.objname = objname; - info.otype = otype; - info.ltype = ltype; - info.idxnum = 0; - info.fno = fno; - info.objno = objno; - info.count = 0; + info.objname = objname; + info.otype = otype; + info.ltype = ltype; + info.idxnum = 0; + info.fno = fno; + info.obj_token = obj_token; + info.count = 0; - if (H5Literate(loc_id, (H5_index_t)indexType, (H5_iter_order_t)indexOrder, NULL, obj_info_all, (void *)&info) < 0) { + if (H5Literate2(loc_id, (H5_index_t)indexType, (H5_iter_order_t)indexOrder, NULL, obj_info_all, + (void *)&info) < 0) { /* * Reset info stats; most importantly, reset the count. */ - info.objname = objname; - info.otype = otype; - info.ltype = ltype; - info.idxnum = 0; - info.fno = fno; - info.objno = objno; - info.count = 0; + info.objname = objname; + info.otype = otype; + info.ltype = ltype; + info.idxnum = 0; + info.fno = fno; + info.obj_token = obj_token; + info.count = 0; /* Iteration failed, try normal alphabetical order */ - if (H5Literate(loc_id, H5_INDEX_NAME, H5_ITER_INC, NULL, obj_info_all, (void *)&info) < 0) + if (H5Literate2(loc_id, H5_INDEX_NAME, H5_ITER_INC, NULL, obj_info_all, (void *)&info) < 0) return -1; } @@ -3341,63 +3653,50 @@ H5Gget_obj_info_full } /* end H5Gget_obj_info_full */ int -H5Gget_obj_info_max - (hid_t loc_id, char **objname, int *otype, int *ltype, unsigned long *objno, long maxnum) +H5Gget_obj_info_max(hid_t loc_id, char **objname, int *otype, int *ltype, H5O_token_t *obj_token, long maxnum) { info_all_t info; - info.objname = objname; - info.otype = otype; - info.ltype = ltype; - info.idxnum = (unsigned long)maxnum; - info.objno = objno; - info.count = 0; + info.objname = objname; + info.otype = otype; + info.ltype = ltype; + info.idxnum = (unsigned long)maxnum; + info.obj_token = obj_token; + info.count = 0; - if (H5Lvisit(loc_id, H5_INDEX_NAME, H5_ITER_NATIVE, obj_info_max, (void *)&info) < 0) + if (H5Lvisit2(loc_id, H5_INDEX_NAME, H5_ITER_NATIVE, obj_info_max, (void *)&info) < 0) return -1; return info.count; } /* end H5Gget_obj_info_max */ herr_t -obj_info_all - (hid_t loc_id, const char *name, const H5L_info_t *info, void *op_data) +obj_info_all(hid_t loc_id, const char *name, const H5L_info2_t *info, void *op_data) { info_all_t *datainfo = (info_all_t *)op_data; - H5O_info_t object_info; + H5O_info2_t object_info; htri_t object_exists; - size_t str_len; - datainfo->otype[datainfo->count] = -1; - datainfo->ltype[datainfo->count] = -1; - datainfo->objno[datainfo->count] = (unsigned long)-1; + datainfo->otype[datainfo->count] = -1; + datainfo->ltype[datainfo->count] = -1; + datainfo->obj_token[datainfo->count] = H5O_TOKEN_UNDEF; - str_len = HDstrlen(name); - if (NULL == (datainfo->objname[datainfo->count] = (char *) HDmalloc(str_len + 1))) + if (NULL == (datainfo->objname[datainfo->count] = HDstrdup(name))) goto done; - HDstrncpy(datainfo->objname[datainfo->count], name, str_len); - (datainfo->objname[datainfo->count])[str_len] = '\0'; - if ((object_exists = H5Oexists_by_name(loc_id, name, H5P_DEFAULT)) < 0) goto done; if (object_exists) { - if (H5Oget_info_by_name2(loc_id, name, &object_info, H5O_INFO_ALL, H5P_DEFAULT) < 0) + if (H5Oget_info_by_name3(loc_id, name, &object_info, H5O_INFO_ALL, H5P_DEFAULT) < 0) goto done; datainfo->otype[datainfo->count] = object_info.type; datainfo->ltype[datainfo->count] = info->type; - datainfo->fno[datainfo->count] = object_info.fileno; - datainfo->objno[datainfo->count] = (unsigned long)object_info.addr; - } + datainfo->fno[datainfo->count] = object_info.fileno; - /* - if (info->type == H5L_TYPE_HARD) - datainfo->objno[datainfo->count] = (unsigned long)info->u.address; - else - datainfo->objno[datainfo->count] = info->u.val_size; - */ + HDmemcpy(&datainfo->obj_token[datainfo->count], &object_info.token, sizeof(object_info.token)); + } done: datainfo->count++; @@ -3406,36 +3705,27 @@ done: } /* end obj_info_all */ herr_t -obj_info_max - (hid_t loc_id, const char *name, const H5L_info_t *info, void *op_data) +obj_info_max(hid_t loc_id, const char *name, const H5L_info2_t *info, void *op_data) { info_all_t *datainfo = (info_all_t *)op_data; - H5O_info_t object_info; - size_t str_len; + H5O_info2_t object_info; - datainfo->otype[datainfo->count] = -1; - datainfo->ltype[datainfo->count] = -1; - datainfo->objname[datainfo->count] = NULL; - datainfo->objno[datainfo->count] = (unsigned long)-1; + datainfo->otype[datainfo->count] = -1; + datainfo->ltype[datainfo->count] = -1; + datainfo->objname[datainfo->count] = NULL; + datainfo->obj_token[datainfo->count] = H5O_TOKEN_UNDEF; /* This will be freed by h5str_array_free(oName, n) */ - str_len = HDstrlen(name); - if (NULL == (datainfo->objname[datainfo->count] = (char *) HDmalloc(str_len + 1))) + if (NULL == (datainfo->objname[datainfo->count] = HDstrdup(name))) goto done; - HDstrncpy(datainfo->objname[datainfo->count], name, str_len); - (datainfo->objname[datainfo->count])[str_len] = '\0'; - - if (H5Oget_info2(loc_id, &object_info, H5O_INFO_ALL) < 0) + if (H5Oget_info3(loc_id, &object_info, H5O_INFO_ALL) < 0) goto done; datainfo->otype[datainfo->count] = object_info.type; datainfo->ltype[datainfo->count] = info->type; - if (info->type == H5L_TYPE_HARD) - datainfo->objno[datainfo->count] = (unsigned long)info->u.address; - else - datainfo->objno[datainfo->count] = info->u.val_size; + HDmemcpy(&datainfo->obj_token[datainfo->count], &object_info.token, sizeof(object_info.token)); done: datainfo->count++; @@ -3449,49 +3739,40 @@ done: /* * Class: hdf_hdf5lib_H5 * Method: H5export_dataset - * Signature: (Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;I)V + * Signature: (Ljava/lang/String;JLjava/lang/String;I)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5export_1dataset - (JNIEnv *env, jclass clss, jstring file_export_name, jstring file_name, jstring object_path, jint binary_order) +Java_hdf_hdf5lib_H5_H5export_1dataset(JNIEnv *env, jclass clss, jstring file_export_name, jlong file_id, + jstring object_path, jint binary_order) { const char *file_export = NULL; const char *object_name = NULL; - const char *fileName = NULL; jboolean isCopy; - herr_t ret_val = FAIL; - hid_t file_id = H5I_INVALID_HID; + herr_t ret_val = FAIL; hid_t dataset_id = H5I_INVALID_HID; - FILE *stream = NULL; + FILE * stream = NULL; UNUSED(clss); if (NULL == file_export_name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5export_dataset: file_export_name is NULL"); - if (NULL == file_name) - H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5export_dataset: file_name is NULL"); - if (NULL == object_path) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5export_dataset: object_path is NULL"); - PIN_JAVA_STRING(ENVONLY, file_name, fileName, NULL, "H5export_dataset: file name not pinned"); - - if ((file_id = H5Fopen(fileName, (unsigned)H5F_ACC_RDWR, (hid_t)H5P_DEFAULT)) < 0) - H5_LIBRARY_ERROR(ENVONLY); - PIN_JAVA_STRING(ENVONLY, object_path, object_name, &isCopy, "H5export_dataset: object_path not pinned"); if ((dataset_id = H5Dopen2(file_id, object_name, H5P_DEFAULT)) < 0) H5_LIBRARY_ERROR(ENVONLY); - PIN_JAVA_STRING(ENVONLY, file_export_name, file_export, NULL, "H5export_dataset: file_export name not pinned"); + PIN_JAVA_STRING(ENVONLY, file_export_name, file_export, NULL, + "H5export_dataset: file_export name not pinned"); if (NULL == (stream = HDfopen(file_export, "w+"))) H5_JNI_FATAL_ERROR(ENVONLY, "HDfopen failed"); if ((ret_val = h5str_dump_simple_dset(ENVONLY, stream, dataset_id, binary_order)) < 0) - H5_JNI_FATAL_ERROR(ENVONLY, "h5str_dump_simple_dset failed"); + H5_ASSERTION_ERROR(ENVONLY, "h5str_dump_simple_dset failed"); if (stream) { HDfclose(stream); @@ -3505,14 +3786,65 @@ done: UNPIN_JAVA_STRING(ENVONLY, file_export_name, file_export); if (object_name) UNPIN_JAVA_STRING(ENVONLY, object_path, object_name); - if (fileName) - UNPIN_JAVA_STRING(ENVONLY, file_name, fileName); if (dataset_id >= 0) H5Dclose(dataset_id); - if (file_id >= 0) - H5Fclose(file_id); } /* end Java_hdf_hdf5lib_H5_H5export_1dataset */ +/* + * Class: hdf_hdf5lib_H5 + * Method: H5export_attribute + * Signature: (Ljava/lang/String;JLjava/lang/String;I)V + */ +JNIEXPORT void JNICALL +Java_hdf_hdf5lib_H5_H5export_1attribute(JNIEnv *env, jclass clss, jstring file_export_name, jlong dset_id, + jstring attribute_name, jint binary_order) +{ + const char *file_export = NULL; + const char *object_name = NULL; + jboolean isCopy; + herr_t ret_val = FAIL; + hid_t attr_id = H5I_INVALID_HID; + FILE * stream = NULL; + + UNUSED(clss); + + if (NULL == file_export_name) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5export_dataset: file_export_name is NULL"); + + if (NULL == attribute_name) + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5export_dataset: object_path is NULL"); + + PIN_JAVA_STRING(ENVONLY, attribute_name, object_name, &isCopy, + "H5export_dataset: object_path not pinned"); + + if ((attr_id = H5Aopen(dset_id, object_name, H5P_DEFAULT)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + PIN_JAVA_STRING(ENVONLY, file_export_name, file_export, NULL, + "H5export_dataset: file_export name not pinned"); + + if (NULL == (stream = HDfopen(file_export, "w+"))) + H5_JNI_FATAL_ERROR(ENVONLY, "HDfopen failed"); + + if ((ret_val = h5str_dump_simple_mem(ENVONLY, stream, attr_id, binary_order)) < 0) + H5_ASSERTION_ERROR(ENVONLY, "h5str_dump_simple_dset failed"); + + if (stream) { + HDfclose(stream); + stream = NULL; + } + +done: + if (stream) + HDfclose(stream); + if (file_export) + UNPIN_JAVA_STRING(ENVONLY, file_export_name, file_export); + if (object_name) + UNPIN_JAVA_STRING(ENVONLY, attribute_name, object_name); + if (attr_id >= 0) + H5Aclose(attr_id); +} /* end Java_hdf_hdf5lib_H5_H5export_1attribute */ + #ifdef __cplusplus } #endif diff --git a/java/src/jni/h5util.h b/java/src/jni/h5util.h index e5f0d0b..6c568e1 100644 --- a/java/src/jni/h5util.h +++ b/java/src/jni/h5util.h @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -23,50 +23,50 @@ #include "h5jni.h" #ifndef SUCCEED -#define SUCCEED 0 +#define SUCCEED 0 #endif #ifndef FAIL -#define FAIL (-1) +#define FAIL (-1) #endif typedef struct h5str_t { - char *s; - size_t max; /* the allocated size of the string */ + char * s; + size_t max; /* the allocated size of the string */ } h5str_t; -extern void h5str_new(h5str_t *str, size_t len); -extern void h5str_free(h5str_t *str); -extern void h5str_resize(h5str_t *str, size_t new_len); -extern char* h5str_append(h5str_t *str, const char* cstr); -extern size_t h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_buf, size_t out_buf_offset); -extern size_t h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *in_buf, size_t in_buf_len, int expand_data); -extern void h5str_array_free(char **strs, size_t len); -extern int h5str_dump_simple_dset(JNIEnv *env, FILE *stream, hid_t dset, int binary_order); -extern int h5str_dump_region_blocks_data(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj); -extern int h5str_dump_region_points_data(JNIEnv *env, h5str_t *str, hid_t region, hid_t region_obj); - -extern htri_t H5Tdetect_variable_str(hid_t tid); +extern void h5str_new(h5str_t *str, size_t len); +extern void h5str_free(h5str_t *str); +extern void h5str_resize(h5str_t *str, size_t new_len); +extern char * h5str_append(h5str_t *str, const char *cstr); +extern size_t h5str_convert(JNIEnv *env, char **in_str, hid_t container, hid_t tid, void *out_buf, + size_t out_buf_offset); +extern int h5str_sprint_reference(JNIEnv *env, h5str_t *out_str, void *ref_p); +extern size_t h5str_sprintf(JNIEnv *env, h5str_t *out_str, hid_t container, hid_t tid, void *in_buf, + int expand_data); +extern void h5str_array_free(char **strs, size_t len); +extern int h5str_dump_simple_dset(JNIEnv *env, FILE *stream, hid_t dset, int binary_order); +extern int h5str_dump_simple_mem(JNIEnv *env, FILE *stream, hid_t attr, int binary_order); + +extern htri_t H5Tdetect_variable_str(hid_t tid); /* * Symbols used to format the output of h5str_sprintf and * to interpret the input to h5str_convert. */ #define H5_COMPOUND_BEGIN_INDICATOR "{" -#define H5_COMPOUND_END_INDICATOR "}" -#define H5_ARRAY_BEGIN_INDICATOR "[" -#define H5_ARRAY_END_INDICATOR "]" -#define H5_VLEN_BEGIN_INDICATOR "(" -#define H5_VLEN_END_INDICATOR ")" +#define H5_COMPOUND_END_INDICATOR "}" +#define H5_ARRAY_BEGIN_INDICATOR "[" +#define H5_ARRAY_END_INDICATOR "]" +#define H5_VLEN_BEGIN_INDICATOR "(" +#define H5_VLEN_END_INDICATOR ")" /* * Class: hdf_hdf5lib_H5 * Method: H5AreadComplex * Signature: (JJ[Ljava/lang/String;)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5AreadComplex - (JNIEnv *, jclass, jlong, jlong, jobjectArray); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5AreadComplex(JNIEnv *, jclass, jlong, jlong, jobjectArray); /* * Copies the content of one dataset to another dataset @@ -74,9 +74,7 @@ Java_hdf_hdf5lib_H5_H5AreadComplex * Method: H5Acopy * Signature: (JJ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Acopy - (JNIEnv *, jclass, jlong, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Acopy(JNIEnv *, jclass, jlong, jlong); /* * Copies the content of one dataset to another dataset @@ -84,35 +82,40 @@ Java_hdf_hdf5lib_H5_H5Acopy * Method: H5Dcopy * Signature: (JJ)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Dcopy - (JNIEnv*, jclass, jlong, jlong); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Dcopy(JNIEnv *, jclass, jlong, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5Gget_obj_info_full * Signature: (JLjava/lang/String;[Ljava/lang/String;[I[I[J[JIII)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1full - (JNIEnv*, jclass, jlong, jstring, jobjectArray, jintArray, jintArray, jlongArray, jlongArray, jint, jint, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1full(JNIEnv *, jclass, jlong, jstring, + jobjectArray, jintArray, jintArray, + jlongArray, jobjectArray, jint, jint, + jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Gget_obj_info_max * Signature: (J[Ljava/lang/String;[I[I[JJI)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1max - (JNIEnv*, jclass, jlong, jobjectArray, jintArray, jintArray, jlongArray, jlong, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Gget_1obj_1info_1max(JNIEnv *, jclass, jlong, jobjectArray, + jintArray, jintArray, jlongArray, jlong, + jint); /* * Class: hdf_hdf5lib_H5 * Method: H5export_dataset - * Signature: (Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;I)V + * Signature: (Ljava/lang/String;JLjava/lang/String;I)V + */ +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5export_1dataset(JNIEnv *, jclass, jstring, jlong, jstring, jint); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5export_attribute + * Signature: (Ljava/lang/String;JLjava/lang/String;I)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5export_1dataset - (JNIEnv*, jclass, jstring, jstring, jstring, jint); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5export_1attribute(JNIEnv *, jclass, jstring, jlong, jstring, + jint); -#endif /* H5UTIL_H__ */ +#endif /* H5UTIL_H__ */ diff --git a/java/src/jni/h5vlImp.c b/java/src/jni/h5vlImp.c index 92e456e..40f8863 100644 --- a/java/src/jni/h5vlImp.c +++ b/java/src/jni/h5vlImp.c @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -33,18 +32,19 @@ extern "C" { * Signature: (Ljava/lang/String;J)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1name - (JNIEnv *env, jclass clss, jobject connector_name, jlong vipl_id) +Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1name(JNIEnv *env, jclass clss, jobject connector_name, + jlong vipl_id) { const char *volName = NULL; - hid_t status = H5I_INVALID_HID; + hid_t status = H5I_INVALID_HID; UNUSED(clss); if (NULL == connector_name) H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5VLregister_connector_by_name: VOL connector name is NULL"); - PIN_JAVA_STRING(ENVONLY, connector_name, volName, NULL, "H5VLregister_connector_by_name: VOL connector name not pinned"); + PIN_JAVA_STRING(ENVONLY, connector_name, volName, NULL, + "H5VLregister_connector_by_name: VOL connector name not pinned"); if ((status = H5VLregister_connector_by_name(volName, (hid_t)vipl_id)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -62,8 +62,8 @@ done: * Signature: (IJ)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1value - (JNIEnv *env, jclass clss, jint connector_value, jlong vipl_id) +Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1value(JNIEnv *env, jclass clss, jint connector_value, + jlong vipl_id) { hid_t status = H5I_INVALID_HID; @@ -78,24 +78,24 @@ done: /* * Class: hdf_hdf5lib_H5 - * Method: H5VLis_connector_registered + * Method: H5VLis_connector_registered_by_name * Signature: (Ljava/lang/String;)Z */ JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5VLis_1connector_1registered - (JNIEnv *env, jclass clss, jobject connector_name) +Java_hdf_hdf5lib_H5_H5VLis_1connector_1registered_1by_1name(JNIEnv *env, jclass clss, jobject connector_name) { const char *volName = NULL; - htri_t bval = JNI_FALSE; + htri_t bval = JNI_FALSE; UNUSED(clss); if (NULL == connector_name) - H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5VLis_connector_registered: VOL connector name is NULL"); + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5VLis_connector_registered_by_name: VOL connector name is NULL"); - PIN_JAVA_STRING(ENVONLY, connector_name, volName, NULL, "H5VLis_connector_registered: VOL connector name not pinned"); + PIN_JAVA_STRING(ENVONLY, connector_name, volName, NULL, + "H5VLis_connector_registered_by_name: VOL connector name not pinned"); - if ((bval = H5VLis_connector_registered(volName)) < 0) + if ((bval = H5VLis_connector_registered_by_name(volName)) < 0) H5_LIBRARY_ERROR(ENVONLY); bval = (bval > 0) ? JNI_TRUE : JNI_FALSE; @@ -105,28 +105,71 @@ done: UNPIN_JAVA_STRING(ENVONLY, connector_name, volName); return (jboolean)bval; -} /* end Java_hdf_hdf5lib_H5_H5VLis_1connector_1registered */ +} /* end Java_hdf_hdf5lib_H5_H5VLis_1connector_1registered_1by_1name */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5VLis_connector_registered_by_value + * Signature: (I)Z + */ +JNIEXPORT jboolean JNICALL +Java_hdf_hdf5lib_H5_H5VLis_1connector_1registered_1by_1value(JNIEnv *env, jclass clss, jint connector_value) +{ + htri_t bval = JNI_FALSE; + + UNUSED(clss); + + if (connector_value < 0) + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5VLis_connector_registered_by_value: VOL connector value < 0"); + + if ((bval = H5VLis_connector_registered_by_value((H5VL_class_value_t)connector_value)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + + bval = (bval > 0) ? JNI_TRUE : JNI_FALSE; + +done: + return (jboolean)bval; +} /* end Java_hdf_hdf5lib_H5_H5VLis_1connector_1registered_1by_1value */ /* * Class: hdf_hdf5lib_H5 * Method: H5VLget_connector_id + * Signature: (J)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5VLget_1connector_1id(JNIEnv *env, jclass clss, jlong obj_id) +{ + hid_t status = H5I_INVALID_HID; + + UNUSED(clss); + + if ((status = H5VLget_connector_id((hid_t)obj_id)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + +done: + return (jlong)status; +} /* end Java_hdf_hdf5lib_H5_H5VLget_1connector_1id */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5VLget_connector_id_by_name * Signature: (Ljava/lang/String;)J */ JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5VLget_1connector_1id - (JNIEnv *env, jclass clss, jobject connector_name) +Java_hdf_hdf5lib_H5_H5VLget_1connector_1id_1by_1name(JNIEnv *env, jclass clss, jobject connector_name) { const char *volName = NULL; - hid_t status = H5I_INVALID_HID; + hid_t status = H5I_INVALID_HID; UNUSED(clss); if (NULL == connector_name) - H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5VLget_connector_id: VOL connector name is NULL"); + H5_NULL_ARGUMENT_ERROR(ENVONLY, "H5VLget_connector_id_by_name: VOL connector name is NULL"); - PIN_JAVA_STRING(ENVONLY, connector_name, volName, NULL, "H5VLget_connector_id: VOL connector name not pinned"); + PIN_JAVA_STRING(ENVONLY, connector_name, volName, NULL, + "H5VLget_connector_id_by_name: VOL connector name not pinned"); - if ((status = H5VLget_connector_id(volName)) < 0) + if ((status = H5VLget_connector_id_by_name(volName)) < 0) H5_LIBRARY_ERROR(ENVONLY); done: @@ -134,7 +177,29 @@ done: UNPIN_JAVA_STRING(ENVONLY, connector_name, volName); return (jlong)status; -} /* end Java_hdf_hdf5lib_H5_H5VLget_1connector_1id */ +} /* end Java_hdf_hdf5lib_H5_H5VLget_1connector_1id_1by_1name */ + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5VLget_connector_id_by_value + * Signature: (I)J + */ +JNIEXPORT jlong JNICALL +Java_hdf_hdf5lib_H5_H5VLget_1connector_1id_1by_1value(JNIEnv *env, jclass clss, jint connector_value) +{ + hid_t status = H5I_INVALID_HID; + + UNUSED(clss); + + if (connector_value < 0) + H5_BAD_ARGUMENT_ERROR(ENVONLY, "H5VLget_connector_id_by_value: VOL connector value < 0"); + + if ((status = H5VLget_connector_id_by_value((H5VL_class_value_t)connector_value)) < 0) + H5_LIBRARY_ERROR(ENVONLY); + +done: + return (jlong)status; +} /* end Java_hdf_hdf5lib_H5_H5VLget_1connector_1id_1by_1value */ /* * Class: hdf_hdf5lib_H5 @@ -143,12 +208,11 @@ done: */ JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5VLget_1connector_1name - (JNIEnv *env, jclass clss, jlong object_id) +Java_hdf_hdf5lib_H5_H5VLget_1connector_1name(JNIEnv *env, jclass clss, jlong object_id) { - ssize_t buf_size, status; - char *volName = NULL; - jstring str = NULL; + ssize_t buf_size, status; + char * volName = NULL; + jstring str = NULL; UNUSED(clss); @@ -157,8 +221,9 @@ Java_hdf_hdf5lib_H5_H5VLget_1connector_1name H5_LIBRARY_ERROR(ENVONLY); if (buf_size > 0) { - if (NULL == (volName = (char *) HDmalloc(sizeof(char) * (size_t)buf_size + 1))) - H5_JNI_FATAL_ERROR(ENVONLY, "H5VLget_connector_name: failed to allocated VOL connector name buffer"); + if (NULL == (volName = (char *)HDmalloc(sizeof(char) * (size_t)buf_size + 1))) + H5_OUT_OF_MEMORY_ERROR(ENVONLY, + "H5VLget_connector_name: failed to allocated VOL connector name buffer"); if ((status = H5VLget_connector_name((hid_t)object_id, volName, (size_t)buf_size + 1)) < 0) H5_LIBRARY_ERROR(ENVONLY); @@ -181,8 +246,7 @@ done: * Signature: (J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5VLclose - (JNIEnv *env, jclass clss, jlong connector_id) +Java_hdf_hdf5lib_H5_H5VLclose(JNIEnv *env, jclass clss, jlong connector_id) { herr_t retValue = FAIL; @@ -201,8 +265,7 @@ done: * Signature: (J)V */ JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5VLunregister_1connector - (JNIEnv *env, jclass clss, jlong connector_id) +Java_hdf_hdf5lib_H5_H5VLunregister_1connector(JNIEnv *env, jclass clss, jlong connector_id) { herr_t retValue = FAIL; @@ -215,7 +278,6 @@ done: return; } /* end Java_hdf_hdf5lib_H5_H5VLunregister_1connector */ - #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ diff --git a/java/src/jni/h5vlImp.h b/java/src/jni/h5vlImp.h index 207efa5..a17807f 100644 --- a/java/src/jni/h5vlImp.h +++ b/java/src/jni/h5vlImp.h @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -14,8 +13,8 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5VL */ -#ifndef _Included_hdf_hdf5lib_H5_H5VL -#define _Included_hdf_hdf5lib_H5_H5VL +#ifndef Included_hdf_hdf5lib_H5_H5VL +#define Included_hdf_hdf5lib_H5_H5VL #ifdef __cplusplus extern "C" { @@ -25,36 +24,52 @@ extern "C" { * Method: H5VLregister_connector_by_name * Signature: (Ljava/lang/String;J)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1name - (JNIEnv *, jclass, jobject, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1name(JNIEnv *, jclass, jobject, + jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5VLregister_connector_by_value * Signature: (IJ)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1value - (JNIEnv *, jclass, jint, jlong); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5VLregister_1connector_1by_1value(JNIEnv *, jclass, jint, jlong); /* * Class: hdf_hdf5lib_H5 - * Method: H5VLis_connector_registered + * Method: H5VLis_connector_registered_by_name * Signature: (Ljava/lang/String;)Z */ -JNIEXPORT jboolean JNICALL -Java_hdf_hdf5lib_H5_H5VLis_1connector_1registered - (JNIEnv *, jclass, jobject); +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5VLis_1connector_1registered_1by_1name(JNIEnv *, jclass, + jobject); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5VLis_connector_registered_by_value + * Signature: (I)Z + */ +JNIEXPORT jboolean JNICALL Java_hdf_hdf5lib_H5_H5VLis_1connector_1registered_1by_1value(JNIEnv *, jclass, + jint); /* * Class: hdf_hdf5lib_H5 * Method: H5VLget_connector_id + * Signature: (J)J + */ +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5VLget_1connector_1id(JNIEnv *, jclass, jlong); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5VLget_connector_id_by_name * Signature: (Ljava/lang/String;)J */ -JNIEXPORT jlong JNICALL -Java_hdf_hdf5lib_H5_H5VLget_1connector_1id - (JNIEnv *, jclass, jobject); +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5VLget_1connector_1id_1by_1name(JNIEnv *, jclass, jobject); + +/* + * Class: hdf_hdf5lib_H5 + * Method: H5VLget_connector_id_by_value + * Signature: (I)J + */ +JNIEXPORT jlong JNICALL Java_hdf_hdf5lib_H5_H5VLget_1connector_1id_1by_1value(JNIEnv *, jclass, jint); /* * Class: hdf_hdf5lib_H5 @@ -62,30 +77,24 @@ Java_hdf_hdf5lib_H5_H5VLget_1connector_1id * Signature: (J)Ljava/lang/String; */ -JNIEXPORT jobject JNICALL -Java_hdf_hdf5lib_H5_H5VLget_1connector_1name - (JNIEnv *, jclass, jlong); +JNIEXPORT jobject JNICALL Java_hdf_hdf5lib_H5_H5VLget_1connector_1name(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5VLclose * Signature: (J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5VLclose - (JNIEnv *, jclass, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5VLclose(JNIEnv *, jclass, jlong); /* * Class: hdf_hdf5lib_H5 * Method: H5VLunregister_connector * Signature: (J)V */ -JNIEXPORT void JNICALL -Java_hdf_hdf5lib_H5_H5VLunregister_1connector - (JNIEnv *, jclass, jlong); +JNIEXPORT void JNICALL Java_hdf_hdf5lib_H5_H5VLunregister_1connector(JNIEnv *, jclass, jlong); #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5VL */ +#endif /* Included_hdf_hdf5lib_H5_H5VL */ diff --git a/java/src/jni/h5zImp.c b/java/src/jni/h5zImp.c index a1c8517..d750ee8 100644 --- a/java/src/jni/h5zImp.c +++ b/java/src/jni/h5zImp.c @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -33,8 +33,7 @@ extern "C" { * Signature: (I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Zunregister - (JNIEnv *env, jclass clss, jint filter) +Java_hdf_hdf5lib_H5_H5Zunregister(JNIEnv *env, jclass clss, jint filter) { herr_t retVal = FAIL; @@ -53,8 +52,7 @@ done: * Signature: (I)I */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Zfilter_1avail - (JNIEnv *env, jclass clss, jint filter) +Java_hdf_hdf5lib_H5_H5Zfilter_1avail(JNIEnv *env, jclass clss, jint filter) { herr_t retVal = FAIL; @@ -74,21 +72,19 @@ done: */ JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Zget_1filter_1info - (JNIEnv *env, jclass clss, jint filter) +Java_hdf_hdf5lib_H5_H5Zget_1filter_1info(JNIEnv *env, jclass clss, jint filter) { unsigned int flags = 0; UNUSED(clss); - if (H5Zget_filter_info((H5Z_filter_t) filter, (unsigned *) &flags) < 0) + if (H5Zget_filter_info((H5Z_filter_t)filter, (unsigned *)&flags) < 0) H5_LIBRARY_ERROR(ENVONLY); done: return (jint)flags; } /* end Java_hdf_hdf5lib_H5_H5Zget_1filter_1info */ - #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ diff --git a/java/src/jni/h5zImp.h b/java/src/jni/h5zImp.h index bffe9d8..3092ae6 100644 --- a/java/src/jni/h5zImp.h +++ b/java/src/jni/h5zImp.h @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -14,8 +13,8 @@ #include <jni.h> /* Header for class hdf_hdf5lib_H5_H5Z */ -#ifndef _Included_hdf_hdf5lib_H5_H5Z -#define _Included_hdf_hdf5lib_H5_H5Z +#ifndef Included_hdf_hdf5lib_H5_H5Z +#define Included_hdf_hdf5lib_H5_H5Z #ifdef __cplusplus extern "C" { @@ -26,18 +25,14 @@ extern "C" { * Method: H5Zunregister * Signature: (I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Zunregister - (JNIEnv *, jclass, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Zunregister(JNIEnv *, jclass, jint); /* * Class: hdf_hdf5lib_H5 * Method: H5Zfilter_avail * Signature: (I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Zfilter_1avail - (JNIEnv *, jclass, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Zfilter_1avail(JNIEnv *, jclass, jint); /* * Class: hdf_hdf5lib_H5 @@ -45,12 +40,10 @@ Java_hdf_hdf5lib_H5_H5Zfilter_1avail * Signature: (I)I */ -JNIEXPORT jint JNICALL -Java_hdf_hdf5lib_H5_H5Zget_1filter_1info - (JNIEnv *, jclass, jint); +JNIEXPORT jint JNICALL Java_hdf_hdf5lib_H5_H5Zget_1filter_1info(JNIEnv *, jclass, jint); #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_H5_H5Z */ +#endif /* Included_hdf_hdf5lib_H5_H5Z */ diff --git a/java/src/jni/nativeData.c b/java/src/jni/nativeData.c index 947f843..9e63f4f 100644 --- a/java/src/jni/nativeData.c +++ b/java/src/jni/nativeData.c @@ -6,7 +6,7 @@ * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -44,21 +44,20 @@ extern "C" { #include "h5jni.h" #include "nativeData.h" - /* returns int [] */ JNIEXPORT jintArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_byteToInt___3B - (JNIEnv *env, jclass clss, jbyteArray bdata) /* IN: array of bytes */ +Java_hdf_hdf5lib_HDFNativeData_byteToInt___3B(JNIEnv *env, jclass clss, + jbyteArray bdata) /* IN: array of bytes */ { - jintArray rarray = NULL; - jboolean bb; - jbyte *barr = NULL; - jint *iarray = NULL; - jint *iap = NULL; - char *bp = NULL; - int blen; - int ii; - int len; + jintArray rarray = NULL; + jboolean bb; + jbyte * barr = NULL; + jint * iarray = NULL; + jint * iap = NULL; + char * bp = NULL; + int blen; + int ii; + int len; UNUSED(clss); @@ -79,7 +78,7 @@ Java_hdf_hdf5lib_HDFNativeData_byteToInt___3B PIN_INT_ARRAY(ENVONLY, rarray, iarray, &bb, "byteToInt: int array not pinned"); - bp = (char *)barr; + bp = (char *)barr; iap = iarray; for (ii = 0; ii < len; ii++) { *iap = *(jint *)bp; @@ -98,18 +97,18 @@ done: /* returns float [] */ JNIEXPORT jfloatArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_byteToFloat___3B - (JNIEnv *env, jclass clss, jbyteArray bdata) /* IN: array of bytes */ +Java_hdf_hdf5lib_HDFNativeData_byteToFloat___3B(JNIEnv *env, jclass clss, + jbyteArray bdata) /* IN: array of bytes */ { - jfloatArray rarray; - jboolean bb; - jfloat *farray = NULL; - jfloat *iap = NULL; - jbyte *barr = NULL; - char *bp = NULL; - int blen; - int ii; - int len; + jfloatArray rarray = NULL; + jboolean bb; + jfloat * farray = NULL; + jfloat * iap = NULL; + jbyte * barr = NULL; + char * bp = NULL; + int blen; + int ii; + int len; UNUSED(clss); @@ -130,7 +129,7 @@ Java_hdf_hdf5lib_HDFNativeData_byteToFloat___3B PIN_FLOAT_ARRAY(ENVONLY, rarray, farray, &bb, "byteToFloat: float array not pinned"); - bp = (char *)barr; + bp = (char *)barr; iap = farray; for (ii = 0; ii < len; ii++) { *iap = *(jfloat *)bp; @@ -149,18 +148,18 @@ done: /* returns short [] */ JNIEXPORT jshortArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_byteToShort___3B - (JNIEnv *env, jclass clss, jbyteArray bdata) /* IN: array of bytes */ +Java_hdf_hdf5lib_HDFNativeData_byteToShort___3B(JNIEnv *env, jclass clss, + jbyteArray bdata) /* IN: array of bytes */ { - jshortArray rarray; - jboolean bb; - jshort *sarray = NULL; - jshort *iap = NULL; - jbyte *barr = NULL; - char *bp = NULL; - int blen; - int ii; - int len; + jshortArray rarray = NULL; + jboolean bb; + jshort * sarray = NULL; + jshort * iap = NULL; + jbyte * barr = NULL; + char * bp = NULL; + int blen; + int ii; + int len; UNUSED(clss); @@ -181,7 +180,7 @@ Java_hdf_hdf5lib_HDFNativeData_byteToShort___3B PIN_SHORT_ARRAY(ENVONLY, rarray, sarray, &bb, "byteToShort: short array not pinned"); - bp = (char *)barr; + bp = (char *)barr; iap = sarray; for (ii = 0; ii < len; ii++) { *iap = *(jshort *)bp; @@ -200,18 +199,18 @@ done: /* returns long [] */ JNIEXPORT jlongArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_byteToLong___3B - (JNIEnv *env, jclass clss, jbyteArray bdata) /* IN: array of bytes */ +Java_hdf_hdf5lib_HDFNativeData_byteToLong___3B(JNIEnv *env, jclass clss, + jbyteArray bdata) /* IN: array of bytes */ { - jlongArray rarray; - jboolean bb; - jlong *larray = NULL; - jlong *iap = NULL; - jbyte *barr = NULL; - char *bp = NULL; - int blen; - int ii; - int len; + jlongArray rarray = NULL; + jboolean bb; + jlong * larray = NULL; + jlong * iap = NULL; + jbyte * barr = NULL; + char * bp = NULL; + int blen; + int ii; + int len; UNUSED(clss); @@ -232,7 +231,7 @@ Java_hdf_hdf5lib_HDFNativeData_byteToLong___3B PIN_LONG_ARRAY(ENVONLY, rarray, larray, &bb, "byteToLong: long array not pinned"); - bp = (char *)barr; + bp = (char *)barr; iap = larray; for (ii = 0; ii < len; ii++) { *iap = *(jlong *)bp; @@ -251,18 +250,18 @@ done: /* returns double [] */ JNIEXPORT jdoubleArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_byteToDouble___3B - (JNIEnv *env, jclass clss, jbyteArray bdata) /* IN: array of bytes */ +Java_hdf_hdf5lib_HDFNativeData_byteToDouble___3B(JNIEnv *env, jclass clss, + jbyteArray bdata) /* IN: array of bytes */ { - jdoubleArray rarray; - jboolean bb; - jdouble *darray = NULL; - jdouble *iap = NULL; - jbyte *barr = NULL; - char *bp = NULL; - int blen; - int ii; - int len; + jdoubleArray rarray = NULL; + jboolean bb; + jdouble * darray = NULL; + jdouble * iap = NULL; + jbyte * barr = NULL; + char * bp = NULL; + int blen; + int ii; + int len; UNUSED(clss); @@ -283,7 +282,7 @@ Java_hdf_hdf5lib_HDFNativeData_byteToDouble___3B PIN_DOUBLE_ARRAY(ENVONLY, rarray, darray, &bb, "byteToDouble: double array not pinned"); - bp = (char *)barr; + bp = (char *)barr; iap = darray; for (ii = 0; ii < len; ii++) { *iap = *(jdouble *)bp; @@ -302,17 +301,17 @@ done: /* returns int [] */ JNIEXPORT jintArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_byteToInt__II_3B - (JNIEnv *env, jclass clss, jint start, jint len, jbyteArray bdata) /* IN: array of bytes */ +Java_hdf_hdf5lib_HDFNativeData_byteToInt__II_3B(JNIEnv *env, jclass clss, jint start, jint len, + jbyteArray bdata) /* IN: array of bytes */ { - jintArray rarray; - jboolean bb; - jint *iarray = NULL; - jint *iap = NULL; - jbyte *barr = NULL; - char *bp = NULL; - int blen; - int ii; + jintArray rarray = NULL; + jboolean bb; + jint * iarray = NULL; + jint * iap = NULL; + jbyte * barr = NULL; + char * bp = NULL; + int blen; + int ii; UNUSED(clss); @@ -327,7 +326,7 @@ Java_hdf_hdf5lib_HDFNativeData_byteToInt__II_3B } if ((start < 0) || ((int)(start + (len * (int)sizeof(jint))) > blen)) - H5_JNI_FATAL_ERROR(ENVONLY, "byteToInt: start < 0 or len exceeded buffer length"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToInt: start < 0 or len exceeded buffer length"); bp = (char *)barr + start; @@ -354,17 +353,17 @@ done: /* returns short [] */ JNIEXPORT jshortArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_byteToShort__II_3B - (JNIEnv *env, jclass clss, jint start, jint len, jbyteArray bdata) /* IN: array of bytes */ +Java_hdf_hdf5lib_HDFNativeData_byteToShort__II_3B(JNIEnv *env, jclass clss, jint start, jint len, + jbyteArray bdata) /* IN: array of bytes */ { - jshortArray rarray; - jboolean bb; - jshort *sarray = NULL; - jshort *iap = NULL; - jbyte *barr = NULL; - char *bp = NULL; - int blen; - int ii; + jshortArray rarray = NULL; + jboolean bb; + jshort * sarray = NULL; + jshort * iap = NULL; + jbyte * barr = NULL; + char * bp = NULL; + int blen; + int ii; UNUSED(clss); @@ -379,7 +378,7 @@ Java_hdf_hdf5lib_HDFNativeData_byteToShort__II_3B } if ((start < 0) || ((int)(start + (len * (int)sizeof(jshort))) > blen)) - H5_JNI_FATAL_ERROR(ENVONLY, "byteToShort: start < 0 or len exceeded buffer length"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToShort: start < 0 or len exceeded buffer length"); bp = (char *)barr + start; @@ -406,17 +405,17 @@ done: /* returns float [] */ JNIEXPORT jfloatArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_byteToFloat__II_3B - (JNIEnv *env, jclass clss, jint start, jint len, jbyteArray bdata) /* IN: array of bytes */ +Java_hdf_hdf5lib_HDFNativeData_byteToFloat__II_3B(JNIEnv *env, jclass clss, jint start, jint len, + jbyteArray bdata) /* IN: array of bytes */ { - jfloatArray rarray; - jboolean bb; - jfloat *farray = NULL; - jfloat *iap = NULL; - jbyte *barr = NULL; - char *bp = NULL; - int blen; - int ii; + jfloatArray rarray = NULL; + jboolean bb; + jfloat * farray = NULL; + jfloat * iap = NULL; + jbyte * barr = NULL; + char * bp = NULL; + int blen; + int ii; UNUSED(clss); @@ -431,7 +430,7 @@ Java_hdf_hdf5lib_HDFNativeData_byteToFloat__II_3B } if ((start < 0) || ((int)(start + (len * (int)sizeof(jfloat))) > blen)) - H5_JNI_FATAL_ERROR(ENVONLY, "byteToFloat: start < 0 or len exceeded buffer length"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToFloat: start < 0 or len exceeded buffer length"); bp = (char *)barr + start; @@ -458,17 +457,17 @@ done: /* returns long [] */ JNIEXPORT jlongArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_byteToLong__II_3B - (JNIEnv *env, jclass clss, jint start, jint len, jbyteArray bdata) /* IN: array of bytes */ +Java_hdf_hdf5lib_HDFNativeData_byteToLong__II_3B(JNIEnv *env, jclass clss, jint start, jint len, + jbyteArray bdata) /* IN: array of bytes */ { - jlongArray rarray; - jboolean bb; - jlong *larray = NULL; - jlong *iap = NULL; - jbyte *barr = NULL; - char *bp = NULL; - int blen; - int ii; + jlongArray rarray = NULL; + jboolean bb; + jlong * larray = NULL; + jlong * iap = NULL; + jbyte * barr = NULL; + char * bp = NULL; + int blen; + int ii; UNUSED(clss); @@ -483,7 +482,7 @@ Java_hdf_hdf5lib_HDFNativeData_byteToLong__II_3B } if ((start < 0) || ((int)(start + (len * (int)sizeof(jlong))) > blen)) - H5_JNI_FATAL_ERROR(ENVONLY, "byteToLong: start < 0 or len exceeded buffer length"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToLong: start < 0 or len exceeded buffer length"); bp = (char *)barr + start; @@ -510,17 +509,17 @@ done: /* returns double [] */ JNIEXPORT jdoubleArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_byteToDouble__II_3B - (JNIEnv *env, jclass clss, jint start, jint len, jbyteArray bdata) /* IN: array of bytes */ +Java_hdf_hdf5lib_HDFNativeData_byteToDouble__II_3B(JNIEnv *env, jclass clss, jint start, jint len, + jbyteArray bdata) /* IN: array of bytes */ { - jdoubleArray rarray; - jboolean bb; - jdouble *darray = NULL; - jdouble *iap = NULL; - jbyte *barr = NULL; - char *bp = NULL; - int blen; - int ii; + jdoubleArray rarray = NULL; + jboolean bb; + jdouble * darray = NULL; + jdouble * iap = NULL; + jbyte * barr = NULL; + char * bp = NULL; + int blen; + int ii; UNUSED(clss); @@ -535,7 +534,7 @@ Java_hdf_hdf5lib_HDFNativeData_byteToDouble__II_3B } if ((start < 0) || ((int)(start + (len * (int)sizeof(jdouble))) > blen)) - H5_JNI_FATAL_ERROR(ENVONLY, "byteToDouble: start < 0 or len exceeded buffer length"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "byteToDouble: start < 0 or len exceeded buffer length"); bp = (char *)barr + start; @@ -562,21 +561,21 @@ done: /* returns byte [] */ JNIEXPORT jbyteArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_intToByte__II_3I - (JNIEnv *env, jclass clss, jint start, jint len, jintArray idata) /* IN: array of int */ +Java_hdf_hdf5lib_HDFNativeData_intToByte__II_3I(JNIEnv *env, jclass clss, jint start, jint len, + jintArray idata) /* IN: array of int */ { - jbyteArray rarray; - jboolean bb; - jbyte *barray = NULL; - jbyte *bap = NULL; - jint *ip = NULL; - jint *iarr = NULL; - int ilen; - int blen; - int ii; - int ij; + jbyteArray rarray = NULL; + jboolean bb; + jbyte * barray = NULL; + jbyte * bap = NULL; + jint * ip = NULL; + jint * iarr = NULL; + int ilen; + int blen; + int ii; + int ij; union things { - int ival; + int ival; char bytes[4]; } u; @@ -593,7 +592,7 @@ Java_hdf_hdf5lib_HDFNativeData_intToByte__II_3I } if ((start < 0) || (((start + len)) > ilen)) - H5_JNI_FATAL_ERROR(ENVONLY, "intToByte: start < 0 or len exceeded buffer length"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "intToByte: start < 0 or len exceeded buffer length"); ip = iarr + start; @@ -607,11 +606,11 @@ Java_hdf_hdf5lib_HDFNativeData_intToByte__II_3I bap = barray; for (ii = 0; ii < len; ii++) { u.ival = *ip++; - for (ij = 0; (size_t) ij < sizeof(jint); ij++) { + for (ij = 0; (size_t)ij < sizeof(jint); ij++) { *bap = u.bytes[ij]; bap++; } /* end for */ - } /* end for */ + } /* end for */ done: if (barray) @@ -624,22 +623,22 @@ done: /* returns byte [] */ JNIEXPORT jbyteArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_shortToByte__II_3S - (JNIEnv *env, jclass clss, jint start, jint len, jshortArray sdata) /* IN: array of short */ +Java_hdf_hdf5lib_HDFNativeData_shortToByte__II_3S(JNIEnv *env, jclass clss, jint start, jint len, + jshortArray sdata) /* IN: array of short */ { - jbyteArray rarray; - jboolean bb; - jshort *ip = NULL; - jshort *sarr = NULL; - jbyte *barray = NULL; - jbyte *bap = NULL; - int ilen; - int blen; - int ii; - int ij; + jbyteArray rarray = NULL; + jboolean bb; + jshort * ip = NULL; + jshort * sarr = NULL; + jbyte * barray = NULL; + jbyte * bap = NULL; + int ilen; + int blen; + int ii; + int ij; union things { short ival; - char bytes[4]; + char bytes[4]; } u; UNUSED(clss); @@ -655,7 +654,7 @@ Java_hdf_hdf5lib_HDFNativeData_shortToByte__II_3S } if ((start < 0) || (((start + len)) > ilen)) - H5_JNI_FATAL_ERROR(ENVONLY, "shortToByte: start < 0 or len exceeded buffer length"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "shortToByte: start < 0 or len exceeded buffer length"); ip = sarr + start; @@ -669,11 +668,11 @@ Java_hdf_hdf5lib_HDFNativeData_shortToByte__II_3S bap = barray; for (ii = 0; ii < len; ii++) { u.ival = *ip++; - for (ij = 0; (size_t) ij < sizeof(jshort); ij++) { + for (ij = 0; (size_t)ij < sizeof(jshort); ij++) { *bap = u.bytes[ij]; bap++; } /* end for */ - } /* end for */ + } /* end for */ done: if (barray) @@ -686,22 +685,22 @@ done: /* returns byte [] */ JNIEXPORT jbyteArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_floatToByte__II_3F - (JNIEnv *env, jclass clss, jint start, jint len, jfloatArray fdata) /* IN: array of float */ +Java_hdf_hdf5lib_HDFNativeData_floatToByte__II_3F(JNIEnv *env, jclass clss, jint start, jint len, + jfloatArray fdata) /* IN: array of float */ { - jbyteArray rarray; - jboolean bb; - jfloat *ip = NULL; - jfloat *farr = NULL; - jbyte *barray = NULL; - jbyte *bap = NULL; - int ilen; - int blen; - int ii; - int ij; + jbyteArray rarray = NULL; + jboolean bb; + jfloat * ip = NULL; + jfloat * farr = NULL; + jbyte * barray = NULL; + jbyte * bap = NULL; + int ilen; + int blen; + int ii; + int ij; union things { float ival; - char bytes[4]; + char bytes[4]; } u; UNUSED(clss); @@ -717,7 +716,7 @@ Java_hdf_hdf5lib_HDFNativeData_floatToByte__II_3F } if ((start < 0) || (((start + len)) > ilen)) - H5_JNI_FATAL_ERROR(ENVONLY, "floatToByte: start < 0 or len exceeded buffer length"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "floatToByte: start < 0 or len exceeded buffer length"); ip = farr + start; @@ -731,11 +730,11 @@ Java_hdf_hdf5lib_HDFNativeData_floatToByte__II_3F bap = barray; for (ii = 0; ii < len; ii++) { u.ival = *ip++; - for (ij = 0; (size_t) ij < sizeof(jfloat); ij++) { + for (ij = 0; (size_t)ij < sizeof(jfloat); ij++) { *bap = u.bytes[ij]; bap++; } /* end for */ - } /* end for */ + } /* end for */ done: if (barray) @@ -748,22 +747,22 @@ done: /* returns byte [] */ JNIEXPORT jbyteArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_doubleToByte__II_3D - (JNIEnv *env, jclass clss, jint start, jint len, jdoubleArray ddata) /* IN: array of double */ +Java_hdf_hdf5lib_HDFNativeData_doubleToByte__II_3D(JNIEnv *env, jclass clss, jint start, jint len, + jdoubleArray ddata) /* IN: array of double */ { - jbyteArray rarray; - jboolean bb; - jdouble *ip = NULL; - jdouble *darr = NULL; - jbyte *barray = NULL; - jbyte *bap = NULL; - int ilen; - int blen; - int ii; - int ij; + jbyteArray rarray = NULL; + jboolean bb; + jdouble * ip = NULL; + jdouble * darr = NULL; + jbyte * barray = NULL; + jbyte * bap = NULL; + int ilen; + int blen; + int ii; + int ij; union things { double ival; - char bytes[8]; + char bytes[8]; } u; UNUSED(clss); @@ -779,7 +778,7 @@ Java_hdf_hdf5lib_HDFNativeData_doubleToByte__II_3D } if ((start < 0) || (((start + len)) > ilen)) - H5_JNI_FATAL_ERROR(ENVONLY, "doubleToByte: start < 0 or len exceeded buffer length"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "doubleToByte: start < 0 or len exceeded buffer length"); ip = darr + start; @@ -793,11 +792,11 @@ Java_hdf_hdf5lib_HDFNativeData_doubleToByte__II_3D bap = barray; for (ii = 0; ii < len; ii++) { u.ival = *ip++; - for (ij = 0; (size_t) ij < sizeof(jdouble); ij++) { + for (ij = 0; (size_t)ij < sizeof(jdouble); ij++) { *bap = u.bytes[ij]; bap++; } /* end for */ - } /* end for */ + } /* end for */ done: if (barray) @@ -810,22 +809,22 @@ done: /* returns byte [] */ JNIEXPORT jbyteArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_longToByte__II_3J - (JNIEnv *env, jclass clss, jint start, jint len, jlongArray ldata) /* IN: array of long */ +Java_hdf_hdf5lib_HDFNativeData_longToByte__II_3J(JNIEnv *env, jclass clss, jint start, jint len, + jlongArray ldata) /* IN: array of long */ { - jbyteArray rarray; - jboolean bb; - jlong *ip = NULL; - jlong *larr = NULL; - jbyte *barray = NULL; - jbyte *bap = NULL; - int ilen; - int blen; - int ii; - int ij; + jbyteArray rarray = NULL; + jboolean bb; + jlong * ip = NULL; + jlong * larr = NULL; + jbyte * barray = NULL; + jbyte * bap = NULL; + int ilen; + int blen; + int ii; + int ij; union things { jlong ival; - char bytes[8]; + char bytes[8]; } u; UNUSED(clss); @@ -841,7 +840,7 @@ Java_hdf_hdf5lib_HDFNativeData_longToByte__II_3J } if ((start < 0) || (((start + len)) > ilen)) - H5_JNI_FATAL_ERROR(ENVONLY, "longToByte: start < 0 or len exceeded buffer length"); + H5_BAD_ARGUMENT_ERROR(ENVONLY, "longToByte: start < 0 or len exceeded buffer length"); ip = larr + start; @@ -855,11 +854,11 @@ Java_hdf_hdf5lib_HDFNativeData_longToByte__II_3J bap = barray; for (ii = 0; ii < len; ii++) { u.ival = *ip++; - for (ij = 0; (size_t) ij < sizeof(jlong); ij++) { + for (ij = 0; (size_t)ij < sizeof(jlong); ij++) { *bap = u.bytes[ij]; bap++; } /* end for */ - } /* end for */ + } /* end for */ done: if (barray) @@ -872,16 +871,15 @@ done: /* returns byte [] */ JNIEXPORT jbyteArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_intToByte__I - (JNIEnv *env, jclass clss, jint idata) /* IN: int */ +Java_hdf_hdf5lib_HDFNativeData_intToByte__I(JNIEnv *env, jclass clss, jint idata) /* IN: int */ { - jbyteArray rarray; - jboolean bb; - jbyte *barray = NULL; - jbyte *bap = NULL; - int ij; + jbyteArray rarray = NULL; + jboolean bb; + jbyte * barray = NULL; + jbyte * bap = NULL; + int ij; union things { - int ival; + int ival; char bytes[sizeof(int)]; } u; @@ -892,9 +890,9 @@ Java_hdf_hdf5lib_HDFNativeData_intToByte__I PIN_BYTE_ARRAY(ENVONLY, rarray, barray, &bb, "intToByte: byte array not pinned"); - bap = barray; + bap = barray; u.ival = idata; - for (ij = 0; (size_t) ij < sizeof(jint); ij++) { + for (ij = 0; (size_t)ij < sizeof(jint); ij++) { *bap = u.bytes[ij]; bap++; } /* end for */ @@ -908,17 +906,16 @@ done: /* returns byte [] */ JNIEXPORT jbyteArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_floatToByte__F - (JNIEnv *env, jclass clss, jfloat fdata) /* IN: float */ +Java_hdf_hdf5lib_HDFNativeData_floatToByte__F(JNIEnv *env, jclass clss, jfloat fdata) /* IN: float */ { - jbyteArray rarray; - jboolean bb; - jbyte *barray = NULL; - jbyte *bap = NULL; - int ij; + jbyteArray rarray = NULL; + jboolean bb; + jbyte * barray = NULL; + jbyte * bap = NULL; + int ij; union things { float ival; - char bytes[sizeof(float)]; + char bytes[sizeof(float)]; } u; UNUSED(clss); @@ -928,9 +925,9 @@ Java_hdf_hdf5lib_HDFNativeData_floatToByte__F PIN_BYTE_ARRAY(ENVONLY, rarray, barray, &bb, "floatToByte: byte array not pinned"); - bap = barray; + bap = barray; u.ival = fdata; - for (ij = 0; (size_t) ij < sizeof(jfloat); ij++) { + for (ij = 0; (size_t)ij < sizeof(jfloat); ij++) { *bap = u.bytes[ij]; bap++; } /* end for */ @@ -944,17 +941,16 @@ done: /* returns byte [] */ JNIEXPORT jbyteArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_shortToByte__S - (JNIEnv *env, jclass clss, jshort sdata) /* IN: short */ +Java_hdf_hdf5lib_HDFNativeData_shortToByte__S(JNIEnv *env, jclass clss, jshort sdata) /* IN: short */ { - jbyteArray rarray; - jboolean bb; - jbyte *barray = NULL; - jbyte *bap = NULL; - int ij; + jbyteArray rarray = NULL; + jboolean bb; + jbyte * barray = NULL; + jbyte * bap = NULL; + int ij; union things { short ival; - char bytes[sizeof(short)]; + char bytes[sizeof(short)]; } u; UNUSED(clss); @@ -964,9 +960,9 @@ Java_hdf_hdf5lib_HDFNativeData_shortToByte__S PIN_BYTE_ARRAY(ENVONLY, rarray, barray, &bb, "shortToByte: byte array not pinned"); - bap = barray; + bap = barray; u.ival = sdata; - for (ij = 0; (size_t) ij < sizeof(jshort); ij++) { + for (ij = 0; (size_t)ij < sizeof(jshort); ij++) { *bap = u.bytes[ij]; bap++; } /* end for */ @@ -980,17 +976,16 @@ done: /* returns byte [] */ JNIEXPORT jbyteArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_doubleToByte__D - (JNIEnv *env, jclass clss, jdouble ddata) /* IN: double */ +Java_hdf_hdf5lib_HDFNativeData_doubleToByte__D(JNIEnv *env, jclass clss, jdouble ddata) /* IN: double */ { - jbyteArray rarray; - jboolean bb; - jbyte *barray = NULL; - jbyte *bap = NULL; - int ij; + jbyteArray rarray = NULL; + jboolean bb; + jbyte * barray = NULL; + jbyte * bap = NULL; + int ij; union things { double ival; - char bytes[sizeof(double)]; + char bytes[sizeof(double)]; } u; UNUSED(clss); @@ -1000,9 +995,9 @@ Java_hdf_hdf5lib_HDFNativeData_doubleToByte__D PIN_BYTE_ARRAY(ENVONLY, rarray, barray, &bb, "doubleToByte: byte array not pinned"); - bap = barray; + bap = barray; u.ival = ddata; - for (ij = 0; (size_t) ij < sizeof(jdouble); ij++) { + for (ij = 0; (size_t)ij < sizeof(jdouble); ij++) { *bap = u.bytes[ij]; bap++; } /* end for */ @@ -1016,17 +1011,16 @@ done: /* returns byte [] */ JNIEXPORT jbyteArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_longToByte__J - (JNIEnv *env, jclass clss, jlong ldata) /* IN: long */ +Java_hdf_hdf5lib_HDFNativeData_longToByte__J(JNIEnv *env, jclass clss, jlong ldata) /* IN: long */ { - jbyteArray rarray; - jboolean bb; - jbyte *barray = NULL; - jbyte *bap = NULL; - int ij; + jbyteArray rarray = NULL; + jboolean bb; + jbyte * barray = NULL; + jbyte * bap = NULL; + int ij; union things { jlong ival; - char bytes[sizeof(jlong)]; + char bytes[sizeof(jlong)]; } u; UNUSED(clss); @@ -1036,9 +1030,9 @@ Java_hdf_hdf5lib_HDFNativeData_longToByte__J PIN_BYTE_ARRAY(ENVONLY, rarray, barray, &bb, "longToByte: byte array not pinned"); - bap = barray; + bap = barray; u.ival = ldata; - for (ij = 0; (size_t) ij < sizeof(jlong); ij++) { + for (ij = 0; (size_t)ij < sizeof(jlong); ij++) { *bap = u.bytes[ij]; bap++; } /* end for */ @@ -1052,17 +1046,16 @@ done: /* returns byte [] */ JNIEXPORT jbyteArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_byteToByte__B - (JNIEnv *env, jclass clss, jbyte bdata) /* IN: byte */ +Java_hdf_hdf5lib_HDFNativeData_byteToByte__B(JNIEnv *env, jclass clss, jbyte bdata) /* IN: byte */ { - jbyteArray rarray; - jboolean bb; - jbyte *barray = NULL; - jbyte *bap = NULL; - int ij; + jbyteArray rarray = NULL; + jboolean bb; + jbyte * barray = NULL; + jbyte * bap = NULL; + int ij; union things { jbyte ival; - char bytes[sizeof(jbyte)]; + char bytes[sizeof(jbyte)]; } u; UNUSED(clss); @@ -1072,9 +1065,9 @@ Java_hdf_hdf5lib_HDFNativeData_byteToByte__B PIN_BYTE_ARRAY(ENVONLY, rarray, barray, &bb, "byteToByte: byte array not pinned"); - bap = barray; + bap = barray; u.ival = bdata; - for (ij = 0; (size_t) ij < sizeof(jbyte); ij++) { + for (ij = 0; (size_t)ij < sizeof(jbyte); ij++) { *bap = u.bytes[ij]; bap++; } /* end for */ @@ -1086,7 +1079,6 @@ done: return rarray; } /* end Java_hdf_hdf5lib_HDFNativeData_byteToByte__B */ - #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ diff --git a/java/src/jni/nativeData.h b/java/src/jni/nativeData.h index e9e1a5d..9bf313f 100644 --- a/java/src/jni/nativeData.h +++ b/java/src/jni/nativeData.h @@ -1,12 +1,11 @@ /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * - * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * - * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ @@ -14,121 +13,88 @@ #include <jni.h> /* Header for class hdf_hdf5lib_HDFNativeData */ -#ifndef _Included_hdf_hdf5lib_HDFNativeData -#define _Included_hdf_hdf5lib_HDFNativeData +#ifndef Included_hdf_hdf5lib_HDFNativeData +#define Included_hdf_hdf5lib_HDFNativeData #ifdef __cplusplus extern "C" { #endif /* __cplusplus */ - /* returns int [] */ -JNIEXPORT jintArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_byteToInt___3B -(JNIEnv *, jclass, jbyteArray); +JNIEXPORT jintArray JNICALL Java_hdf_hdf5lib_HDFNativeData_byteToInt___3B(JNIEnv *, jclass, jbyteArray); /* returns float [] */ -JNIEXPORT jfloatArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_byteToFloat___3B -(JNIEnv *, jclass, jbyteArray); +JNIEXPORT jfloatArray JNICALL Java_hdf_hdf5lib_HDFNativeData_byteToFloat___3B(JNIEnv *, jclass, jbyteArray); /* returns short [] */ -JNIEXPORT jshortArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_byteToShort___3B -(JNIEnv *, jclass, jbyteArray); +JNIEXPORT jshortArray JNICALL Java_hdf_hdf5lib_HDFNativeData_byteToShort___3B(JNIEnv *, jclass, jbyteArray); /* returns long [] */ -JNIEXPORT jlongArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_byteToLong___3B -(JNIEnv *, jclass, jbyteArray); +JNIEXPORT jlongArray JNICALL Java_hdf_hdf5lib_HDFNativeData_byteToLong___3B(JNIEnv *, jclass, jbyteArray); /* returns double [] */ -JNIEXPORT jdoubleArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_byteToDouble___3B -(JNIEnv *, jclass, jbyteArray); +JNIEXPORT jdoubleArray JNICALL Java_hdf_hdf5lib_HDFNativeData_byteToDouble___3B(JNIEnv *, jclass, jbyteArray); /* returns int [] */ -JNIEXPORT jintArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_byteToInt__II_3B -(JNIEnv *, jclass, jint, jint, jbyteArray); +JNIEXPORT jintArray JNICALL Java_hdf_hdf5lib_HDFNativeData_byteToInt__II_3B(JNIEnv *, jclass, jint, jint, + jbyteArray); /* returns short [] */ -JNIEXPORT jshortArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_byteToShort__II_3B -(JNIEnv *, jclass, jint, jint, jbyteArray); +JNIEXPORT jshortArray JNICALL Java_hdf_hdf5lib_HDFNativeData_byteToShort__II_3B(JNIEnv *, jclass, jint, jint, + jbyteArray); /* returns float [] */ -JNIEXPORT jfloatArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_byteToFloat__II_3B -(JNIEnv *, jclass, jint, jint, jbyteArray); +JNIEXPORT jfloatArray JNICALL Java_hdf_hdf5lib_HDFNativeData_byteToFloat__II_3B(JNIEnv *, jclass, jint, jint, + jbyteArray); /* returns long [] */ -JNIEXPORT jlongArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_byteToLong__II_3B -(JNIEnv *, jclass, jint, jint, jbyteArray); +JNIEXPORT jlongArray JNICALL Java_hdf_hdf5lib_HDFNativeData_byteToLong__II_3B(JNIEnv *, jclass, jint, jint, + jbyteArray); /* returns double [] */ -JNIEXPORT jdoubleArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_byteToDouble__II_3B -(JNIEnv *, jclass, jint, jint, jbyteArray); +JNIEXPORT jdoubleArray JNICALL Java_hdf_hdf5lib_HDFNativeData_byteToDouble__II_3B(JNIEnv *, jclass, jint, + jint, jbyteArray); /* returns byte [] */ -JNIEXPORT jbyteArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_intToByte__II_3I -(JNIEnv *, jclass, jint, jint, jintArray); +JNIEXPORT jbyteArray JNICALL Java_hdf_hdf5lib_HDFNativeData_intToByte__II_3I(JNIEnv *, jclass, jint, jint, + jintArray); /* returns byte [] */ -JNIEXPORT jbyteArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_shortToByte__II_3S -(JNIEnv *, jclass, jint, jint, jshortArray); +JNIEXPORT jbyteArray JNICALL Java_hdf_hdf5lib_HDFNativeData_shortToByte__II_3S(JNIEnv *, jclass, jint, jint, + jshortArray); /* returns byte [] */ -JNIEXPORT jbyteArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_floatToByte__II_3F -(JNIEnv *, jclass, jint, jint, jfloatArray); +JNIEXPORT jbyteArray JNICALL Java_hdf_hdf5lib_HDFNativeData_floatToByte__II_3F(JNIEnv *, jclass, jint, jint, + jfloatArray); /* returns byte [] */ -JNIEXPORT jbyteArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_doubleToByte__II_3D -(JNIEnv *, jclass, jint, jint, jdoubleArray); +JNIEXPORT jbyteArray JNICALL Java_hdf_hdf5lib_HDFNativeData_doubleToByte__II_3D(JNIEnv *, jclass, jint, jint, + jdoubleArray); /* returns byte [] */ -JNIEXPORT jbyteArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_longToByte__II_3J -(JNIEnv *, jclass, jint, jint, jlongArray); +JNIEXPORT jbyteArray JNICALL Java_hdf_hdf5lib_HDFNativeData_longToByte__II_3J(JNIEnv *, jclass, jint, jint, + jlongArray); /* returns byte [] */ -JNIEXPORT jbyteArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_intToByte__I -(JNIEnv *, jclass, jint); +JNIEXPORT jbyteArray JNICALL Java_hdf_hdf5lib_HDFNativeData_intToByte__I(JNIEnv *, jclass, jint); /* returns byte [] */ -JNIEXPORT jbyteArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_floatToByte__F -(JNIEnv *, jclass, jfloat); +JNIEXPORT jbyteArray JNICALL Java_hdf_hdf5lib_HDFNativeData_floatToByte__F(JNIEnv *, jclass, jfloat); /* returns byte [] */ -JNIEXPORT jbyteArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_shortToByte__S -(JNIEnv *, jclass, jshort); +JNIEXPORT jbyteArray JNICALL Java_hdf_hdf5lib_HDFNativeData_shortToByte__S(JNIEnv *, jclass, jshort); /* returns byte [] */ -JNIEXPORT jbyteArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_doubleToByte__D -(JNIEnv *env, jclass, jdouble); +JNIEXPORT jbyteArray JNICALL Java_hdf_hdf5lib_HDFNativeData_doubleToByte__D(JNIEnv *env, jclass, jdouble); /* returns byte [] */ -JNIEXPORT jbyteArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_longToByte__J -(JNIEnv *, jclass, jlong); +JNIEXPORT jbyteArray JNICALL Java_hdf_hdf5lib_HDFNativeData_longToByte__J(JNIEnv *, jclass, jlong); /* returns byte [] */ -JNIEXPORT jbyteArray JNICALL -Java_hdf_hdf5lib_HDFNativeData_byteToByte__B -(JNIEnv *, jclass, jbyte); +JNIEXPORT jbyteArray JNICALL Java_hdf_hdf5lib_HDFNativeData_byteToByte__B(JNIEnv *, jclass, jbyte); #ifdef __cplusplus } /* end extern "C" */ #endif /* __cplusplus */ -#endif /* _Included_hdf_hdf5lib_HDFNativeData */ +#endif /* Included_hdf_hdf5lib_HDFNativeData */ |