diff options
Diffstat (limited to 'java/test/TestH5A.java')
-rw-r--r-- | java/test/TestH5A.java | 436 |
1 files changed, 430 insertions, 6 deletions
diff --git a/java/test/TestH5A.java b/java/test/TestH5A.java index 2633fde..0d38914 100644 --- a/java/test/TestH5A.java +++ b/java/test/TestH5A.java @@ -46,6 +46,7 @@ public class TestH5A { private static final int DIM_Y = 6; long H5fid = HDF5Constants.H5I_INVALID_HID; long H5dsid = HDF5Constants.H5I_INVALID_HID; + long H5atid = HDF5Constants.H5I_INVALID_HID; long H5did = HDF5Constants.H5I_INVALID_HID; long[] H5dims = {DIM_X, DIM_Y}; long type_id = HDF5Constants.H5I_INVALID_HID; @@ -133,8 +134,12 @@ public class TestH5A { } catch (Exception ex) { } - - _deleteFile(H5_FILE); + if (H5atid > 0) + try { + H5.H5Tclose(H5atid); + } + catch (Exception ex) { + } if (type_id > 0) try { @@ -154,6 +159,8 @@ public class TestH5A { } catch (Exception ex) { } + + _deleteFile(H5_FILE); System.out.println(); } @@ -1066,7 +1073,7 @@ public class TestH5A { HDF5Constants.H5P_DEFAULT); assertTrue("testH5Awrite_readVL: ", attr_id >= 0); - H5.H5Awrite_VLStrings(attr_id, atype_id, str_data); + H5.H5AwriteVL(attr_id, atype_id, str_data); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); @@ -1078,7 +1085,7 @@ public class TestH5A { strs[j] = ""; } try { - H5.H5Aread_VLStrings(attr_id, atype_id, strs); + H5.H5AreadVL(attr_id, atype_id, strs); } catch (Exception ex) { ex.printStackTrace(); @@ -1495,9 +1502,8 @@ public class TestH5A { H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); - for (int j = 0; j < dims.length; j++) { + for (int j = 0; j < dims.length; j++) lsize *= dims[j]; - } // Read Integer data ArrayList[] vl_readbuf = new ArrayList[4]; @@ -1570,4 +1576,422 @@ public class TestH5A { } } } + + @Test + public void testH5AVLwrVL() + { + String attr_int_name = "VLIntdata"; + long attr_int_id = HDF5Constants.H5I_INVALID_HID; + long atype_int_id = HDF5Constants.H5I_INVALID_HID; + long base_atype_int_id = HDF5Constants.H5I_INVALID_HID; + long aspace_id = HDF5Constants.H5I_INVALID_HID; + long[] dims = {4}; + long lsize = 1; + + ArrayList[] base_vl_int_data = new ArrayList[4]; + ArrayList[] vl_int_data = new ArrayList[4]; + try { + // Write Integer data + vl_int_data[0] = new ArrayList<Integer>(Arrays.asList(1)); + vl_int_data[1] = new ArrayList<Integer>(Arrays.asList(2, 3)); + vl_int_data[2] = new ArrayList<Integer>(Arrays.asList(4, 5, 6)); + vl_int_data[3] = new ArrayList<Integer>(Arrays.asList(7, 8, 9, 10)); + Class dataClass = vl_int_data.getClass(); + assertTrue("testH5AVLwrVL.getClass: " + dataClass, dataClass.isArray()); + + // Write VL data + base_vl_int_data[0] = new ArrayList<ArrayList<Integer>>(); + base_vl_int_data[0].add(vl_int_data[0]); + base_vl_int_data[1] = new ArrayList<ArrayList<Integer>>(); + base_vl_int_data[1].add(vl_int_data[0]); + base_vl_int_data[1].add(vl_int_data[1]); + base_vl_int_data[2] = new ArrayList<ArrayList<Integer>>(); + base_vl_int_data[2].add(vl_int_data[0]); + base_vl_int_data[2].add(vl_int_data[1]); + base_vl_int_data[2].add(vl_int_data[2]); + base_vl_int_data[3] = new ArrayList<ArrayList<Integer>>(); + base_vl_int_data[3].add(vl_int_data[0]); + base_vl_int_data[3].add(vl_int_data[1]); + base_vl_int_data[3].add(vl_int_data[2]); + base_vl_int_data[3].add(vl_int_data[3]); + + try { + atype_int_id = H5.H5Tvlen_create(HDF5Constants.H5T_STD_U32LE); + assertTrue("testH5AVLwr.H5Tvlen_create: ", atype_int_id >= 0); + base_atype_int_id = H5.H5Tvlen_create(atype_int_id); + assertTrue("testH5AVLwrVL.H5Tvlen_create: ", base_atype_int_id >= 0); + } + catch (Exception err) { + if (base_atype_int_id > 0) + try { + H5.H5Tclose(base_atype_int_id); + } + catch (Exception ex) { + } + if (atype_int_id > 0) + try { + H5.H5Tclose(atype_int_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5AVLwrVL: " + err); + } + + try { + aspace_id = H5.H5Screate_simple(1, dims, null); + assertTrue(aspace_id > 0); + attr_int_id = H5.H5Acreate(H5did, attr_int_name, base_atype_int_id, aspace_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + assertTrue("testH5AVLwrVL: ", attr_int_id >= 0); + + H5.H5AwriteVL(attr_int_id, base_atype_int_id, base_vl_int_data); + } + catch (Exception err) { + if (attr_int_id > 0) + try { + H5.H5Aclose(attr_int_id); + } + catch (Exception ex) { + } + if (atype_int_id > 0) + try { + H5.H5Tclose(atype_int_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5AVLwrVL: " + err); + } + finally { + if (aspace_id > 0) + try { + H5.H5Sclose(aspace_id); + } + catch (Exception ex) { + } + } + + H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); + + for (int j = 0; j < dims.length; j++) + lsize *= dims[j]; + + // Read Integer data + ArrayList[] base_vl_readbuf = new ArrayList[4]; + for (int j = 0; j < lsize; j++) + base_vl_readbuf[j] = new ArrayList<ArrayList<Integer>>(); + + try { + H5.H5AreadVL(attr_int_id, base_atype_int_id, base_vl_readbuf); + } + catch (Exception ex) { + ex.printStackTrace(); + } + ArrayList<ArrayList<Integer>> vl_readbuf = (ArrayList<ArrayList<Integer>>)base_vl_readbuf[0]; + assertTrue("vl_readbuf 0 exists", vl_readbuf != null); + ArrayList<Integer> vl_readbuf_int = (ArrayList<Integer>)(vl_readbuf.get(0)); + /* + * System.out.println(); System.out.println("vl_readbuf: " + vl_readbuf); + * System.out.println("vl_readbuf_int: " + vl_readbuf_int); + */ + assertTrue("testHADVLwrVL:" + vl_readbuf_int.get(0), + vl_int_data[0].get(0).equals(vl_readbuf_int.get(0))); + + vl_readbuf = (ArrayList<ArrayList<Integer>>)base_vl_readbuf[1]; + vl_readbuf_int = (ArrayList<Integer>)(vl_readbuf.get(1)); + /* + * System.out.println("vl_readbuf: " + vl_readbuf); System.out.println("vl_readbuf_int: " + + * vl_readbuf_int); + */ + assertTrue("testH5AVLwrVL:" + vl_readbuf_int.get(1), + vl_int_data[1].get(1).equals(vl_readbuf_int.get(1))); + + vl_readbuf = (ArrayList<ArrayList<Integer>>)base_vl_readbuf[2]; + vl_readbuf_int = (ArrayList<Integer>)(vl_readbuf.get(2)); + /* + * System.out.println("vl_readbuf: " + vl_readbuf); System.out.println("vl_readbuf_int: " + + * vl_readbuf_int); + */ + assertTrue("testH5AVLwrVL:" + vl_readbuf_int.get(2), + vl_int_data[2].get(2).equals(vl_readbuf_int.get(2))); + + vl_readbuf = (ArrayList<ArrayList<Integer>>)base_vl_readbuf[3]; + vl_readbuf_int = (ArrayList<Integer>)(vl_readbuf.get(3)); + /* + * System.out.println("vl_readbuf: " + vl_readbuf); System.out.println("vl_readbuf_int: " + + * vl_readbuf_int); + */ + assertTrue("testH5AVLwrVL:" + vl_readbuf_int.get(3), + vl_int_data[3].get(3).equals(vl_readbuf_int.get(3))); + } + catch (Throwable err) { + err.printStackTrace(); + fail("H5.testH5AVLwrVL: " + err); + } + finally { + if (attr_int_id > 0) + try { + H5.H5Aclose(attr_int_id); + } + catch (Exception ex) { + } + if (atype_int_id > 0) + try { + H5.H5Tclose(atype_int_id); + } + catch (Exception ex) { + } + if (base_atype_int_id > 0) + try { + H5.H5Tclose(base_atype_int_id); + } + catch (Exception ex) { + } + } + } + + @Test + public void testH5AArraywr() + { + String att_int_name = "ArrayIntdata"; + long att_int_id = HDF5Constants.H5I_INVALID_HID; + long atype_int_id = HDF5Constants.H5I_INVALID_HID; + long aspace_id = HDF5Constants.H5I_INVALID_HID; + long[] dims = {4}; + long lsize = 1; + + ArrayList[] arr_int_data = new ArrayList[4]; + try { + // Write Integer data + arr_int_data[0] = new ArrayList<Integer>(Arrays.asList(1, 2, 3, 4)); + arr_int_data[1] = new ArrayList<Integer>(Arrays.asList(2, 3, 4, 5)); + arr_int_data[2] = new ArrayList<Integer>(Arrays.asList(4, 5, 6, 7)); + arr_int_data[3] = new ArrayList<Integer>(Arrays.asList(7, 8, 9, 10)); + Class dataClass = arr_int_data.getClass(); + assertTrue("testH5AArraywr.getClass: " + dataClass, dataClass.isArray()); + + try { + atype_int_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_U32LE, 1, dims); + assertTrue("testH5AArraywr.H5Tarray_create: ", atype_int_id >= 0); + } + catch (Exception err) { + if (atype_int_id > 0) + try { + H5.H5Tclose(atype_int_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5AArraywr: " + err); + } + + try { + aspace_id = H5.H5Screate_simple(1, dims, null); + assertTrue(aspace_id > 0); + att_int_id = H5.H5Acreate(H5did, att_int_name, atype_int_id, aspace_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + assertTrue("testH5AVLwr: ", att_int_id >= 0); + + H5.H5AwriteVL(att_int_id, atype_int_id, arr_int_data); + } + catch (Exception err) { + if (att_int_id > 0) + try { + H5.H5Aclose(att_int_id); + } + catch (Exception ex) { + } + if (atype_int_id > 0) + try { + H5.H5Tclose(atype_int_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5AVLwr: " + err); + } + finally { + if (aspace_id > 0) + try { + H5.H5Sclose(aspace_id); + } + catch (Exception ex) { + } + } + + H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); + + for (int j = 0; j < dims.length; j++) + lsize *= dims[j]; + + // Read Integer data + ArrayList[] arr_readbuf = new ArrayList[4]; + for (int j = 0; j < lsize; j++) + arr_readbuf[j] = new ArrayList<Integer>(); + + try { + H5.H5AreadVL(att_int_id, atype_int_id, arr_readbuf); + } + catch (Exception ex) { + ex.printStackTrace(); + } + assertTrue("testH5AVLwr:" + arr_readbuf[0].get(0), + arr_int_data[0].get(0).equals(arr_readbuf[0].get(0))); + assertTrue("testH5AVLwr:" + arr_readbuf[1].get(0), + arr_int_data[1].get(0).equals(arr_readbuf[1].get(0))); + assertTrue("testH5AVLwr:" + arr_readbuf[2].get(0), + arr_int_data[2].get(0).equals(arr_readbuf[2].get(0))); + assertTrue("testH5AVLwr:" + arr_readbuf[3].get(0), + arr_int_data[3].get(0).equals(arr_readbuf[3].get(0))); + } + catch (Throwable err) { + err.printStackTrace(); + fail("H5.testH5AArraywr: " + err); + } + finally { + if (att_int_id > 0) + try { + H5.H5Aclose(att_int_id); + } + catch (Exception ex) { + } + if (atype_int_id > 0) + try { + H5.H5Tclose(atype_int_id); + } + catch (Exception ex) { + } + } + } + + @Test + public void testH5AArray_string_buffer() throws Throwable + { + String att_str_name = "ArrayStringdata"; + long att_str_id = HDF5Constants.H5I_INVALID_HID; + long atype_str_id = HDF5Constants.H5I_INVALID_HID; + long aspace_id = HDF5Constants.H5I_INVALID_HID; + long[] strdims = {4}; + long[] dims = {6}; + long lsize = 1; + + String[] str_data0 = {"Parting", "is such", "sweet", "sorrow."}; + String[] str_data1 = {"Testing", "one", "two", "three."}; + String[] str_data2 = {"Dog,", "man's", "best", "friend."}; + String[] str_data3 = {"Diamonds", "are", "a", "girls!"}; + String[] str_data4 = {"S A", "T U R", "D A Y", "night"}; + String[] str_data5 = {"That's", "all", "folks", "!!!"}; + + ArrayList[] arr_str_data = new ArrayList[6]; + arr_str_data[0] = new ArrayList<String>(Arrays.asList(str_data0)); + arr_str_data[1] = new ArrayList<String>(Arrays.asList(str_data1)); + arr_str_data[2] = new ArrayList<String>(Arrays.asList(str_data2)); + arr_str_data[3] = new ArrayList<String>(Arrays.asList(str_data3)); + arr_str_data[4] = new ArrayList<String>(Arrays.asList(str_data4)); + arr_str_data[5] = new ArrayList<String>(Arrays.asList(str_data5)); + + try { + H5atid = H5.H5Tcopy(HDF5Constants.H5T_C_S1); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5AArray_string_buffer.H5.H5Tcopy: " + err); + } + assertTrue("testH5AArray_string_buffer.H5Tcopy: ", H5atid >= 0); + try { + H5.H5Tset_size(H5atid, HDF5Constants.H5T_VARIABLE); + assertTrue("testH5AArray_string_buffer.H5Tis_variable_str", H5.H5Tis_variable_str(H5atid)); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5DArray_string_buffer.H5Tset_size: " + err); + } + try { + atype_str_id = H5.H5Tarray_create(H5atid, 1, strdims); + assertTrue("testH5AArray_string_buffer.H5Tarray_create: ", atype_str_id >= 0); + } + catch (Exception err) { + if (atype_str_id > 0) + try { + H5.H5Tclose(atype_str_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("testH5AArray_string_buffer: " + err); + } + + try { + aspace_id = H5.H5Screate_simple(1, dims, null); + assertTrue(aspace_id > 0); + att_str_id = H5.H5Acreate(H5did, att_str_name, atype_str_id, aspace_id, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); + assertTrue("testH5AArray_string_buffer: ", att_str_id >= 0); + + H5.H5AwriteVL(att_str_id, atype_str_id, arr_str_data); + } + catch (Exception err) { + if (att_str_id > 0) + try { + H5.H5Dclose(att_str_id); + } + catch (Exception ex) { + } + if (atype_str_id > 0) + try { + H5.H5Tclose(atype_str_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("testH5AArray_string_buffer: " + err); + } + finally { + if (aspace_id > 0) + try { + H5.H5Sclose(aspace_id); + } + catch (Exception ex) { + } + } + + H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); + + for (int j = 0; j < dims.length; j++) + lsize *= dims[j]; + + ArrayList[] arr_readbuf = new ArrayList[6]; + for (int j = 0; j < lsize; j++) + arr_readbuf[j] = new ArrayList<String>(); + + try { + H5.H5AreadVL(att_str_id, atype_str_id, arr_readbuf); + } + catch (Exception ex) { + ex.printStackTrace(); + } + finally { + if (att_str_id > 0) + try { + H5.H5Aclose(att_str_id); + } + catch (Exception ex) { + } + if (atype_str_id > 0) + try { + H5.H5Tclose(atype_str_id); + } + catch (Exception ex) { + } + } + assertTrue("testH5AArray_string_buffer:" + arr_readbuf[0].get(0), + arr_str_data[0].get(0).equals(arr_readbuf[0].get(0))); + assertTrue("testH5AArray_string_buffer:" + arr_readbuf[1].get(0), + arr_str_data[1].get(0).equals(arr_readbuf[1].get(0))); + assertTrue("testH5AArray_string_buffer:" + arr_readbuf[2].get(0), + arr_str_data[2].get(0).equals(arr_readbuf[2].get(0))); + assertTrue("testH5AArray_string_buffer:" + arr_readbuf[3].get(0), + arr_str_data[3].get(0).equals(arr_readbuf[3].get(0))); + } } |