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-rw-r--r--java/test/TestH5A.java259
1 files changed, 234 insertions, 25 deletions
diff --git a/java/test/TestH5A.java b/java/test/TestH5A.java
index 113196a..52731b3 100644
--- a/java/test/TestH5A.java
+++ b/java/test/TestH5A.java
@@ -20,6 +20,8 @@ import static org.junit.Assert.fail;
import java.io.File;
import java.util.ArrayList;
+import java.util.Arrays;
+import java.util.List;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
@@ -249,9 +251,8 @@ public class TestH5A {
// Opening the existing attribute, obj_name(Created by H5ACreate2)
// by index, attached to an object identifier.
- attribute_id =
- H5.H5Aopen_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0,
- HDF5Constants.H5P_DEFAULT, lapl_id);
+ attribute_id = H5.H5Aopen_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER,
+ HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT, lapl_id);
assertTrue("testH5Aopen_by_idx: H5Aopen_by_idx", attribute_id >= 0);
@@ -313,9 +314,9 @@ public class TestH5A {
boolean bool_val = false;
try {
- attribute_id =
- H5.H5Acreate_by_name(H5fid, obj_name, attr_name, type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
+ attribute_id = H5.H5Acreate_by_name(H5fid, obj_name, attr_name, type_id, space_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ lapl_id);
assertTrue("testH5Acreate_by_name: H5Acreate_by_name", attribute_id >= 0);
// Check if the name of attribute attached to the object specified
@@ -433,9 +434,9 @@ public class TestH5A {
long attribute_id = HDF5Constants.H5I_INVALID_HID;
try {
- attribute_id =
- H5.H5Acreate_by_name(H5fid, obj_name, attr_name, type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT, lapl_id);
+ attribute_id = H5.H5Acreate_by_name(H5fid, obj_name, attr_name, type_id, space_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ lapl_id);
assertTrue("testH5Aget_name: H5Acreate_by_name ", attribute_id > 0);
ret_name = H5.H5Aget_name(attribute_id);
assertEquals(ret_name, attr_name);
@@ -539,7 +540,7 @@ public class TestH5A {
try {
attr_id = H5.H5Acreate(H5did, "dset", type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
attribute_id = H5.H5Aopen(H5did, "dset", HDF5Constants.H5P_DEFAULT);
// Calling H5Aget_info with attribute_id returned from H5Aopen.
attr_info = H5.H5Aget_info(attribute_id);
@@ -580,7 +581,7 @@ public class TestH5A {
try {
attr_id = H5.H5Acreate(H5did, ".", type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
attribute_id = H5.H5Aopen_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER, order, 0,
HDF5Constants.H5P_DEFAULT, lapl_id);
// Calling H5Aget_info with attribute_id returned from
@@ -623,7 +624,7 @@ public class TestH5A {
try {
attr_id = H5.H5Acreate(H5did, "dset1", type_id, space_id, HDF5Constants.H5P_DEFAULT,
- HDF5Constants.H5P_DEFAULT);
+ HDF5Constants.H5P_DEFAULT);
attr2_id = H5.H5Acreate(H5did, "dataset2", type_id, space_id, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT);
@@ -700,7 +701,7 @@ public class TestH5A {
try {
attr_id = H5.H5Acreate_by_name(H5fid, obj_name, attr_name, type_id, space_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
attr_info = H5.H5Aget_info_by_name(H5fid, obj_name, attr_name, lapl_id);
assertNotNull(attr_info);
}
@@ -1064,7 +1065,7 @@ public class TestH5A {
HDF5Constants.H5P_DEFAULT);
assertTrue("testH5Awrite_readVL: ", attr_id >= 0);
- H5.H5AwriteVL(attr_id, atype_id, str_data);
+ H5.H5Awrite_VLStrings(attr_id, atype_id, str_data);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
@@ -1076,7 +1077,7 @@ public class TestH5A {
strs[j] = "";
}
try {
- H5.H5AreadVL(attr_id, atype_id, strs);
+ H5.H5Aread_VLStrings(attr_id, atype_id, strs);
}
catch (Exception ex) {
ex.printStackTrace();
@@ -1151,12 +1152,12 @@ public class TestH5A {
fail("H5.H5Acreate: " + err);
}
- /* Close the property list, and get the attribute's property list */
+ // Close the property list, and get the attribute's property list
H5.H5Pclose(plist_id);
plist_id = H5.H5Aget_create_plist(attribute_id);
assertTrue(plist_id > 0);
- /* Get the character encoding and ensure that it is the default (ASCII) */
+ // Get the character encoding and ensure that it is the default (ASCII)
try {
char_encoding = H5.H5Pget_char_encoding(plist_id);
}
@@ -1213,13 +1214,13 @@ public class TestH5A {
}
try {
attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1", type_id, space_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
attr2_id = H5.H5Acreate_by_name(H5fid, ".", "attribute2", type_id, space_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
attr3_id = H5.H5Acreate_by_name(H5fid, ".", "attribute3", type_id, space_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
attr4_id = H5.H5Acreate_by_name(H5fid, ".", "attribute4", type_id, space_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
H5A_iterate_cb iter_cb = new H5A_iter_callback();
try {
H5.H5Aiterate(H5fid, HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0L, iter_cb,
@@ -1306,13 +1307,13 @@ public class TestH5A {
}
try {
attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute4", type_id, space_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
attr2_id = H5.H5Acreate_by_name(H5fid, ".", "attribute3", type_id, space_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
attr3_id = H5.H5Acreate_by_name(H5fid, ".", "attribute2", type_id, space_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
attr4_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1", type_id, space_id,
- HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id);
H5A_iterate_cb iter_cb = new H5A_iter_callback();
try {
H5.H5Aiterate_by_name(H5fid, ".", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0L,
@@ -1360,4 +1361,212 @@ public class TestH5A {
}
}
}
+
+ @Test
+ public void testH5AVLwr()
+ {
+ String attr_int_name = "VLIntdata";
+ String attr_dbl_name = "VLDbldata";
+ long attr_int_id = HDF5Constants.H5I_INVALID_HID;
+ long attr_dbl_id = HDF5Constants.H5I_INVALID_HID;
+ long atype_int_id = HDF5Constants.H5I_INVALID_HID;
+ long atype_dbl_id = HDF5Constants.H5I_INVALID_HID;
+ long aspace_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {4};
+ long lsize = 1;
+
+ ArrayList[] vl_int_data = new ArrayList[4];
+ ArrayList[] vl_dbl_data = new ArrayList[4];
+ try {
+ // Write Integer data
+ vl_int_data[0] = new ArrayList<Integer>(Arrays.asList(1));
+ vl_int_data[1] = new ArrayList<Integer>(Arrays.asList(2, 3));
+ vl_int_data[2] = new ArrayList<Integer>(Arrays.asList(4, 5, 6));
+ vl_int_data[3] = new ArrayList<Integer>(Arrays.asList(7, 8, 9, 10));
+ Class dataClass = vl_int_data.getClass();
+ assertTrue("testH5AVLwr.getClass: " + dataClass, dataClass.isArray());
+
+ try {
+ atype_int_id = H5.H5Tvlen_create(HDF5Constants.H5T_STD_U32LE);
+ assertTrue("testH5AVLwr.H5Tvlen_create: ", atype_int_id >= 0);
+ }
+ catch (Exception err) {
+ if (atype_int_id > 0)
+ try {
+ H5.H5Tclose(atype_int_id);
+ }
+ catch (Exception ex) {
+ }
+ err.printStackTrace();
+ fail("H5.testH5AVLwr: " + err);
+ }
+
+ try {
+ aspace_id = H5.H5Screate_simple(1, dims, null);
+ assertTrue(aspace_id > 0);
+ attr_int_id = H5.H5Acreate(H5did, attr_int_name, atype_int_id, aspace_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ assertTrue("testH5AVLwr: ", attr_int_id >= 0);
+
+ H5.H5AwriteVL(attr_int_id, atype_int_id, vl_int_data);
+ }
+ catch (Exception err) {
+ if (attr_int_id > 0)
+ try {
+ H5.H5Aclose(attr_int_id);
+ }
+ catch (Exception ex) {
+ }
+ if (atype_int_id > 0)
+ try {
+ H5.H5Tclose(atype_int_id);
+ }
+ catch (Exception ex) {
+ }
+ err.printStackTrace();
+ fail("H5.testH5AVLwr: " + err);
+ }
+ finally {
+ if (aspace_id > 0)
+ try {
+ H5.H5Sclose(aspace_id);
+ }
+ catch (Exception ex) {
+ }
+ }
+
+ // Write Double data
+ vl_dbl_data[0] = new ArrayList<Double>(Arrays.asList(1.1));
+ vl_dbl_data[1] = new ArrayList<Double>(Arrays.asList(2.2, 3.3));
+ vl_dbl_data[2] = new ArrayList<Double>(Arrays.asList(4.4, 5.5, 6.6));
+ vl_dbl_data[3] = new ArrayList<Double>(Arrays.asList(7.7, 8.8, 9.9, 10.0));
+ dataClass = vl_dbl_data.getClass();
+ assertTrue("testH5AVLwr.getClass: " + dataClass, dataClass.isArray());
+
+ try {
+ atype_dbl_id = H5.H5Tvlen_create(HDF5Constants.H5T_NATIVE_DOUBLE);
+ assertTrue("testH5AVLwr.H5Tvlen_create: ", atype_dbl_id >= 0);
+ }
+ catch (Exception err) {
+ if (atype_dbl_id > 0)
+ try {
+ H5.H5Tclose(atype_dbl_id);
+ }
+ catch (Exception ex) {
+ }
+ err.printStackTrace();
+ fail("H5.testH5AVLwr: " + err);
+ }
+
+ try {
+ aspace_id = H5.H5Screate_simple(1, dims, null);
+ assertTrue(aspace_id > 0);
+ attr_dbl_id = H5.H5Acreate(H5did, attr_dbl_name, atype_dbl_id, aspace_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ assertTrue("testH5AVLwr: ", attr_dbl_id >= 0);
+
+ H5.H5AwriteVL(attr_dbl_id, atype_dbl_id, vl_dbl_data);
+ }
+ catch (Exception err) {
+ if (attr_dbl_id > 0)
+ try {
+ H5.H5Aclose(attr_dbl_id);
+ }
+ catch (Exception ex) {
+ }
+ if (atype_dbl_id > 0)
+ try {
+ H5.H5Tclose(atype_dbl_id);
+ }
+ catch (Exception ex) {
+ }
+ err.printStackTrace();
+ fail("H5.testH5AVLwr: " + err);
+ }
+ finally {
+ if (aspace_id > 0)
+ try {
+ H5.H5Sclose(aspace_id);
+ }
+ catch (Exception ex) {
+ }
+ }
+
+ H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
+
+ for (int j = 0; j < dims.length; j++) {
+ lsize *= dims[j];
+ }
+
+ // Read Integer data
+ ArrayList[] vl_readbuf = new ArrayList[4];
+ for (int j = 0; j < lsize; j++)
+ vl_readbuf[j] = new ArrayList<Integer>();
+
+ try {
+ H5.H5AreadVL(attr_int_id, atype_int_id, vl_readbuf);
+ }
+ catch (Exception ex) {
+ ex.printStackTrace();
+ }
+ assertTrue("testH5AVLwr:" + vl_readbuf[0].get(0),
+ vl_int_data[0].get(0).equals(vl_readbuf[0].get(0)));
+ assertTrue("testH5AVLwr:" + vl_readbuf[1].get(0),
+ vl_int_data[1].get(0).equals(vl_readbuf[1].get(0)));
+ assertTrue("testH5AVLwr:" + vl_readbuf[2].get(0),
+ vl_int_data[2].get(0).equals(vl_readbuf[2].get(0)));
+ assertTrue("testH5AVLwr:" + vl_readbuf[3].get(0),
+ vl_int_data[3].get(0).equals(vl_readbuf[3].get(0)));
+
+ // Read Double data
+ vl_readbuf = new ArrayList[4];
+ for (int j = 0; j < lsize; j++)
+ vl_readbuf[j] = new ArrayList<Double>();
+
+ try {
+ H5.H5AreadVL(attr_dbl_id, atype_dbl_id, vl_readbuf);
+ }
+ catch (Exception ex) {
+ ex.printStackTrace();
+ }
+ assertTrue("testH5AVLwr:" + vl_readbuf[0].get(0),
+ vl_dbl_data[0].get(0).equals(vl_readbuf[0].get(0)));
+ assertTrue("testH5AVLwr:" + vl_readbuf[1].get(0),
+ vl_dbl_data[1].get(0).equals(vl_readbuf[1].get(0)));
+ assertTrue("testH5AVLwr:" + vl_readbuf[2].get(0),
+ vl_dbl_data[2].get(0).equals(vl_readbuf[2].get(0)));
+ assertTrue("testH5AVLwr:" + vl_readbuf[3].get(0),
+ vl_dbl_data[3].get(0).equals(vl_readbuf[3].get(0)));
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("H5.testH5AVLwr: " + err);
+ }
+ finally {
+ if (attr_dbl_id > 0)
+ try {
+ H5.H5Aclose(attr_dbl_id);
+ }
+ catch (Exception ex) {
+ }
+ if (attr_int_id > 0)
+ try {
+ H5.H5Aclose(attr_int_id);
+ }
+ catch (Exception ex) {
+ }
+ if (atype_dbl_id > 0)
+ try {
+ H5.H5Tclose(atype_dbl_id);
+ }
+ catch (Exception ex) {
+ }
+ if (atype_int_id > 0)
+ try {
+ H5.H5Tclose(atype_int_id);
+ }
+ catch (Exception ex) {
+ }
+ }
+ }
}
generated by cgit v0.12 at 2024-08-30 05:12:05 (GMT)