diff options
Diffstat (limited to 'java/test/TestH5D.java')
| -rw-r--r-- | java/test/TestH5D.java | 181 |
1 files changed, 171 insertions, 10 deletions
diff --git a/java/test/TestH5D.java b/java/test/TestH5D.java index f7e5702..ec9caa3 100644 --- a/java/test/TestH5D.java +++ b/java/test/TestH5D.java @@ -1064,8 +1064,8 @@ public class TestH5D { HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); assertTrue("testH5DVLwr: ", dset_int_id >= 0); - H5.H5DwriteVL(dset_int_id, dtype_int_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, vl_int_data); + H5.H5Dwrite(dset_int_id, dtype_int_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, vl_int_data); } catch (Exception err) { if (dset_int_id > 0) @@ -1123,8 +1123,8 @@ public class TestH5D { HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); assertTrue("testH5DVLwr: ", dset_dbl_id >= 0); - H5.H5DwriteVL(dset_dbl_id, dtype_dbl_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, vl_dbl_data); + H5.H5Dwrite(dset_dbl_id, dtype_dbl_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, vl_dbl_data); } catch (Exception err) { if (dset_dbl_id > 0) @@ -1153,9 +1153,8 @@ public class TestH5D { H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); - for (int j = 0; j < dims.length; j++) { + for (int j = 0; j < dims.length; j++) lsize *= dims[j]; - } // Read Integer data ArrayList[] vl_readbuf = new ArrayList[4]; @@ -1163,8 +1162,8 @@ public class TestH5D { vl_readbuf[j] = new ArrayList<Integer>(); try { - H5.H5DreadVL(dset_int_id, dtype_int_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, vl_readbuf); + H5.H5Dread(dset_int_id, dtype_int_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, vl_readbuf); } catch (Exception ex) { ex.printStackTrace(); @@ -1184,8 +1183,8 @@ public class TestH5D { vl_readbuf[j] = new ArrayList<Double>(); try { - H5.H5DreadVL(dset_dbl_id, dtype_dbl_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, vl_readbuf); + H5.H5Dread(dset_dbl_id, dtype_dbl_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, vl_readbuf); } catch (Exception ex) { ex.printStackTrace(); @@ -1230,4 +1229,166 @@ public class TestH5D { } } } + + @Test + public void testH5DVLwrVL() + { + String dset_int_name = "VLIntdata"; + long dset_int_id = HDF5Constants.H5I_INVALID_HID; + long dtype_int_id = HDF5Constants.H5I_INVALID_HID; + long base_dtype_int_id = HDF5Constants.H5I_INVALID_HID; + long dspace_id = HDF5Constants.H5I_INVALID_HID; + long[] dims = {4}; + long lsize = 1; + + ArrayList[] base_vl_int_data = new ArrayList[4]; + ArrayList[] vl_int_data = new ArrayList[4]; + try { + // Write Integer data + vl_int_data[0] = new ArrayList<Integer>(Arrays.asList(1)); + vl_int_data[1] = new ArrayList<Integer>(Arrays.asList(2, 3)); + vl_int_data[2] = new ArrayList<Integer>(Arrays.asList(4, 5, 6)); + vl_int_data[3] = new ArrayList<Integer>(Arrays.asList(7, 8, 9, 10)); + Class dataClass = vl_int_data.getClass(); + assertTrue("testH5DVLwrVL.getClass: " + dataClass, dataClass.isArray()); + + // Write VL data + base_vl_int_data[0] = new ArrayList<ArrayList<Integer>>(); + base_vl_int_data[0].add(vl_int_data[0]); + base_vl_int_data[1] = new ArrayList<ArrayList<Integer>>(); + base_vl_int_data[1].add(vl_int_data[0]); + base_vl_int_data[1].add(vl_int_data[1]); + base_vl_int_data[2] = new ArrayList<ArrayList<Integer>>(); + base_vl_int_data[2].add(vl_int_data[0]); + base_vl_int_data[2].add(vl_int_data[1]); + base_vl_int_data[2].add(vl_int_data[2]); + base_vl_int_data[3] = new ArrayList<ArrayList<Integer>>(); + base_vl_int_data[3].add(vl_int_data[0]); + base_vl_int_data[3].add(vl_int_data[1]); + base_vl_int_data[3].add(vl_int_data[2]); + base_vl_int_data[3].add(vl_int_data[3]); + + try { + dtype_int_id = H5.H5Tvlen_create(HDF5Constants.H5T_STD_U32LE); + assertTrue("testH5DVLwrVL.H5Tvlen_create: ", dtype_int_id >= 0); + base_dtype_int_id = H5.H5Tvlen_create(dtype_int_id); + assertTrue("testH5DVLwrVL.H5Tvlen_create: ", base_dtype_int_id >= 0); + } + catch (Exception err) { + if (base_dtype_int_id > 0) + try { + H5.H5Tclose(base_dtype_int_id); + } + catch (Exception ex) { + } + if (dtype_int_id > 0) + try { + H5.H5Tclose(dtype_int_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5DVLwrVL: " + err); + } + + try { + dspace_id = H5.H5Screate_simple(1, dims, null); + assertTrue(dspace_id > 0); + dset_int_id = H5.H5Dcreate(H5fid, dset_int_name, base_dtype_int_id, dspace_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); + assertTrue("testH5DVLwrVL: ", dset_int_id >= 0); + + H5.H5Dwrite(dset_int_id, base_dtype_int_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, base_vl_int_data); + } + catch (Exception err) { + if (dset_int_id > 0) + try { + H5.H5Dclose(dset_int_id); + } + catch (Exception ex) { + } + if (dtype_int_id > 0) + try { + H5.H5Tclose(dtype_int_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5DVLwrVL: " + err); + } + finally { + if (dspace_id > 0) + try { + H5.H5Sclose(dspace_id); + } + catch (Exception ex) { + } + } + + H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); + + for (int j = 0; j < dims.length; j++) + lsize *= dims[j]; + + // Read Integer data + ArrayList[] base_vl_readbuf = new ArrayList[4]; + for (int j = 0; j < lsize; j++) + base_vl_readbuf[j] = new ArrayList<ArrayList<Integer>>(); + + try { + H5.H5Dread(dset_int_id, base_dtype_int_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, base_vl_readbuf); + } + catch (Exception ex) { + ex.printStackTrace(); + } + ArrayList vl_readbuf = (ArrayList)base_vl_readbuf[0]; + assertTrue("vl_readbuf exists", vl_readbuf != null); + assertTrue("vl_readbuf has size " + vl_readbuf.size(), vl_readbuf.size() > 0); + ArrayList vl_readbuf_int = (ArrayList)vl_readbuf.get(0); + assertTrue("testH5DVLwrVL:" + vl_readbuf_int.get(0), + vl_int_data[0].get(0).equals(vl_readbuf_int.get(0))); + + vl_readbuf = (ArrayList)base_vl_readbuf[1]; + vl_readbuf_int = (ArrayList)vl_readbuf.get(1); + assertTrue("testH5DVLwrVL:" + vl_readbuf_int.get(0), + vl_int_data[1].get(0).equals(vl_readbuf_int.get(0))); + + vl_readbuf = (ArrayList)base_vl_readbuf[2]; + vl_readbuf_int = (ArrayList)vl_readbuf.get(2); + assertTrue("testH5DVLwrVL:" + vl_readbuf_int.get(0), + vl_int_data[2].get(0).equals(vl_readbuf_int.get(0))); + + vl_readbuf = (ArrayList)base_vl_readbuf[3]; + vl_readbuf_int = (ArrayList)vl_readbuf.get(3); + assertTrue("testH5DVLwrVL:" + vl_readbuf_int.get(0), + vl_int_data[3].get(0).equals(vl_readbuf_int.get(0))); + } + catch (Throwable err) { + err.printStackTrace(); + fail("H5.testH5DVLwrVL: " + err); + } + finally { + if (dset_int_id > 0) + try { + H5.H5Dclose(dset_int_id); + } + catch (Exception ex) { + } + if (dtype_int_id > 0) + try { + H5.H5Tclose(dtype_int_id); + } + catch (Exception ex) { + } + if (base_dtype_int_id > 0) + try { + H5.H5Tclose(base_dtype_int_id); + } + catch (Exception ex) { + } + } + } } |