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Diffstat (limited to 'java/test/TestH5OcopyOld.java')
| -rw-r--r-- | java/test/TestH5OcopyOld.java | 494 |
1 files changed, 494 insertions, 0 deletions
diff --git a/java/test/TestH5OcopyOld.java b/java/test/TestH5OcopyOld.java new file mode 100644 index 0000000..6353df5 --- /dev/null +++ b/java/test/TestH5OcopyOld.java @@ -0,0 +1,494 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://www.hdfgroup.org/licenses. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +package test; + +import static org.junit.Assert.assertEquals; +import static org.junit.Assert.assertTrue; +import static org.junit.Assert.fail; + +import java.io.File; + +import hdf.hdf5lib.H5; +import hdf.hdf5lib.HDF5Constants; +import hdf.hdf5lib.exceptions.HDF5Exception; +import hdf.hdf5lib.exceptions.HDF5LibraryException; + +import org.junit.After; +import org.junit.Before; +import org.junit.Ignore; +import org.junit.Rule; +import org.junit.Test; +import org.junit.rules.TestName; + +public class TestH5OcopyOld { + @Rule + public TestName testname = new TestName(); + private static final String FILENAME = "testRefsattributeO.h5"; + private static final int DIM_X = 4; + private static final int DIM_Y = 6; + long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5dsid = HDF5Constants.H5I_INVALID_HID; + long H5did1 = HDF5Constants.H5I_INVALID_HID; + long H5did2 = HDF5Constants.H5I_INVALID_HID; + long H5gcpl = HDF5Constants.H5I_INVALID_HID; + long H5gid = HDF5Constants.H5I_INVALID_HID; + long H5dsid2 = HDF5Constants.H5I_INVALID_HID; + long[] dims = {2}; + + private final void _deleteFile(String filename) + { + File file = new File(filename); + + if (file.exists()) { + try { + file.delete(); + } + catch (Exception e) { + e.printStackTrace(); + } + } + } + + private final long _createDataset(long fid, long dsid, String name, long dapl) + { + long did = HDF5Constants.H5I_INVALID_HID; + try { + did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, dapl); + } + catch (Throwable err) { + err.printStackTrace(); + fail("H5.H5Dcreate: " + err); + } + assertTrue("TestH5O._createDataset: ", did >= 0); + + return did; + } + + private final long _createGroup(long fid, String name) + { + long gid = HDF5Constants.H5I_INVALID_HID; + try { + H5gcpl = HDF5Constants.H5P_DEFAULT; + gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, H5gcpl, HDF5Constants.H5P_DEFAULT); + } + catch (Throwable err) { + err.printStackTrace(); + fail("H5.H5Gcreate: " + err); + } + assertTrue("TestH5O._createGroup: ", gid >= 0); + + return gid; + } + + @Before + public void createH5file() throws NullPointerException, HDF5Exception + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); + System.out.print(testname.getMethodName()); + try { + H5fid = H5.H5Fcreate(FILENAME, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); + H5dsid2 = H5.H5Screate(HDF5Constants.H5S_SCALAR); + H5did1 = _createDataset(H5fid, H5dsid2, "DS2", HDF5Constants.H5P_DEFAULT); + H5dsid = H5.H5Screate_simple(1, dims, null); + H5gid = _createGroup(H5fid, "/G1"); + H5did2 = _createDataset(H5gid, H5dsid, "DS1", HDF5Constants.H5P_DEFAULT); + } + catch (Throwable err) { + err.printStackTrace(); + fail("TestH5O.createH5file: " + err); + } + assertTrue("TestH5O.createH5file: H5.H5Fcreate: ", H5fid >= 0); + assertTrue("TestH5O.createH5file: H5.H5Screate_simple: ", H5dsid >= 0); + assertTrue("TestH5O.createH5file: H5.H5Gcreate: ", H5gid >= 0); + + H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); + } + + @After + public void deleteH5file() throws HDF5LibraryException + { + if (H5gid > 0) + try { + H5.H5Gclose(H5gid); + } + catch (Exception ex) { + } + if (H5did2 > 0) + try { + H5.H5Dclose(H5did2); + } + catch (Exception ex) { + } + if (H5dsid > 0) + try { + H5.H5Sclose(H5dsid); + } + catch (Exception ex) { + } + if (H5dsid2 > 0) + try { + H5.H5Sclose(H5dsid2); + } + catch (Exception ex) { + } + if (H5did1 > 0) + try { + H5.H5Dclose(H5did1); + } + catch (Exception ex) { + } + if (H5fid > 0) + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } + + _deleteFile(FILENAME); + System.out.println(); + } + + @Test + public void testH5OcopyRefsAttr() + { + long ocp_plist_id = HDF5Constants.H5I_INVALID_HID; + byte rbuf0[] = null, rbuf1[] = null; + byte[] dset_data = new byte[16]; + long attribute_id = HDF5Constants.H5I_INVALID_HID; + + try { + rbuf0 = H5.H5Rcreate(H5fid, "/G1", HDF5Constants.H5R_OBJECT, -1); + rbuf1 = H5.H5Rcreate(H5fid, "DS2", HDF5Constants.H5R_OBJECT, -1); + // System.arraycopy(rbuf0, 0, dset_data, 0, 8); + System.arraycopy(rbuf1, 0, dset_data, 8, 8); + } + catch (Exception ex) { + fail("testH5OcopyRefsAttr: H5Rcreate failed"); + } + + try { + attribute_id = H5.H5Acreate(H5did2, "A1", HDF5Constants.H5T_STD_REF_OBJ, H5dsid, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + assertTrue("testH5OcopyRefsAttr.H5Acreate: ", attribute_id >= 0); + H5.H5Awrite(attribute_id, HDF5Constants.H5T_STD_REF_OBJ, dset_data); + + H5.H5Aclose(attribute_id); + } + catch (Exception ex) { + fail("testH5OcopyRefsAttr: H5Awrite failed"); + } + finally { + try { + H5.H5Aclose(attribute_id); + } + catch (Exception exx) { + } + } + + try { + ocp_plist_id = H5.H5Pcreate(HDF5Constants.H5P_OBJECT_COPY); + assertTrue("testH5OcopyRefsAttr.H5Pcreate: ", ocp_plist_id >= 0); + H5.H5Pset_copy_object(ocp_plist_id, HDF5Constants.H5O_COPY_EXPAND_REFERENCE_FLAG); + H5.H5Ocopy(H5fid, ".", H5fid, "CPYREF", ocp_plist_id, HDF5Constants.H5P_DEFAULT); + } + catch (Exception ex) { + fail("testH5OcopyRefsAttr: H5Ocopy failed"); + } + finally { + try { + H5.H5Pclose(ocp_plist_id); + } + catch (Exception ex) { + } + } + } + + @Test + public void testH5OcopyRefsDatasettodiffFile() + { + byte rbuf1[] = null; + byte[] dset_data = new byte[16]; + long ocp_plist_id = HDF5Constants.H5I_INVALID_HID; + long dataset_id = HDF5Constants.H5I_INVALID_HID; + long H5fid2 = HDF5Constants.H5I_INVALID_HID; + + try { + rbuf1 = H5.H5Rcreate(H5fid, "DS2", HDF5Constants.H5R_OBJECT, -1); + System.arraycopy(rbuf1, 0, dset_data, 8, 8); + + dataset_id = + H5.H5Dcreate(H5fid, "DSREF", HDF5Constants.H5T_STD_REF_OBJ, H5dsid, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + assertTrue("testH5OcopyRefsDatasettodiffFile.H5Dcreate: ", dataset_id >= 0); + H5.H5Dwrite(dataset_id, HDF5Constants.H5T_STD_REF_OBJ, HDF5Constants.H5S_ALL, + HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data); + H5.H5Dclose(dataset_id); + } + catch (Exception ex) { + fail("testH5OcopyRefsDatasettodiffFile: create dataset failed"); + } + finally { + try { + H5.H5Dclose(dataset_id); + } + catch (Exception exx) { + } + } + + try { + // create new file + H5fid2 = H5.H5Fcreate("copy.h5", HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); + assertTrue("testH5OcopyRefsDatasettodiffFile.H5Fcreate: ", H5fid2 >= 0); + H5.H5Fflush(H5fid2, HDF5Constants.H5F_SCOPE_LOCAL); + } + catch (Exception ex) { + try { + H5.H5Fclose(H5fid2); + } + catch (Exception exx) { + } + fail("testH5OcopyRefsDatasettodiffFile: H5Fcreate failed"); + } + + try { + // create object copy property list id and set the flags. + ocp_plist_id = H5.H5Pcreate(HDF5Constants.H5P_OBJECT_COPY); + assertTrue("testH5OcopyRefsDatasettodiffFile.H5Pcreate: ", ocp_plist_id >= 0); + H5.H5Pset_copy_object(ocp_plist_id, HDF5Constants.H5O_COPY_EXPAND_REFERENCE_FLAG); + + // Perform copy function. + H5.H5Ocopy(H5fid, ".", H5fid2, "CPYREFD", ocp_plist_id, HDF5Constants.H5P_DEFAULT); + } + catch (Exception ex) { + ex.printStackTrace(); + fail("testH5OcopyRefsDatasettodiffFile: H5Ocopy failed"); + } + finally { + try { + H5.H5Pclose(ocp_plist_id); + } + catch (Exception ex) { + } + try { + H5.H5Fclose(H5fid2); + } + catch (Exception ex) { + } + } + _deleteFile("copy.h5"); + } + + @Test + public void testH5OcopyRefsDatasettosameFile() + { + byte rbuf0[] = null, rbuf1[] = null; + byte[] dset_data = new byte[16]; + long ocp_plist_id = HDF5Constants.H5I_INVALID_HID; + long dataset_id = HDF5Constants.H5I_INVALID_HID; + long did = HDF5Constants.H5I_INVALID_HID; + int obj_type = -1; + byte[] read_data = new byte[16]; + + try { + rbuf0 = H5.H5Rcreate(H5fid, "/G1", HDF5Constants.H5R_OBJECT, -1); + rbuf1 = H5.H5Rcreate(H5fid, "DS2", HDF5Constants.H5R_OBJECT, -1); + System.arraycopy(rbuf0, 0, dset_data, 0, 8); + System.arraycopy(rbuf1, 0, dset_data, 8, 8); + + // Create a dataset and write object references to it. + dataset_id = + H5.H5Dcreate(H5fid, "DSREF", HDF5Constants.H5T_STD_REF_OBJ, H5dsid, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + assertTrue("testH5OcopyRefsDatasettosameFile.H5Dcreate: ", dataset_id >= 0); + H5.H5Dwrite(dataset_id, HDF5Constants.H5T_STD_REF_OBJ, HDF5Constants.H5S_ALL, + HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data); + // Close the dataset. + H5.H5Dclose(dataset_id); + } + catch (Exception ex) { + try { + H5.H5Dclose(dataset_id); + } + catch (Exception exx) { + } + fail("testH5OcopyRefsDatasettosameFile: create dataset failed"); + } + + try { + ocp_plist_id = H5.H5Pcreate(HDF5Constants.H5P_OBJECT_COPY); + assertTrue("testH5OcopyRefsDatasettosameFile.H5Pcreate: ", ocp_plist_id >= 0); + H5.H5Pset_copy_object(ocp_plist_id, HDF5Constants.H5O_COPY_EXPAND_REFERENCE_FLAG); + } + catch (Exception ex) { + try { + H5.H5Pclose(ocp_plist_id); + } + catch (Exception exx) { + } + fail("testH5OcopyRefsDatasettosameFile: H5Pset_copy_object failed"); + } + + // Perform copy function. + try { + H5.H5Ocopy(H5fid, "DSREF", H5fid, "CPYREFD", ocp_plist_id, HDF5Constants.H5P_DEFAULT); + } + catch (Exception ex) { + try { + H5.H5Pclose(ocp_plist_id); + } + catch (Exception exx) { + } + fail("testH5OcopyRefsDatasettosameFile: H5Ocopy failed"); + } + + // Open the dataset that has been copied + try { + did = H5.H5Dopen(H5fid, "DSREF", HDF5Constants.H5P_DEFAULT); + assertTrue("testH5OcopyRefsDatasettosameFile.H5Dopen: ", did >= 0); + } + catch (Exception e) { + try { + H5.H5Dclose(did); + } + catch (Exception exx) { + } + e.printStackTrace(); + fail("testH5OcopyRefsDatasettosameFile: H5Dopen failed"); + } + + try { + // Read the dataset object references in the read_data buffer. + H5.H5Dread(did, HDF5Constants.H5T_STD_REF_OBJ, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, read_data); + System.arraycopy(read_data, 0, rbuf0, 0, 8); + System.arraycopy(read_data, 8, rbuf1, 0, 8); + + // Get the type of object the reference points to. + obj_type = H5.H5Rget_obj_type(H5fid, HDF5Constants.H5R_OBJECT, rbuf1); + assertEquals(obj_type, HDF5Constants.H5O_TYPE_DATASET); + + obj_type = H5.H5Rget_obj_type(H5fid, HDF5Constants.H5R_OBJECT, rbuf0); + assertEquals(obj_type, HDF5Constants.H5O_TYPE_GROUP); + } + catch (Exception ex) { + ex.printStackTrace(); + } + finally { + try { + H5.H5Dclose(did); + } + catch (Exception ex) { + } + try { + H5.H5Pclose(ocp_plist_id); + } + catch (Exception ex) { + } + } + } + + @Test + public void testH5OcopyNullRef() throws Throwable + { + final long _pid_ = HDF5Constants.H5P_DEFAULT; + long sid = HDF5Constants.H5I_INVALID_HID; + long did = HDF5Constants.H5I_INVALID_HID; + long aid = HDF5Constants.H5I_INVALID_HID; + + try { + sid = H5.H5Screate_simple(1, new long[] {1}, null); + assertTrue("testH5OcopyNullRef.H5Screate_simple: ", sid >= 0); + did = H5.H5Dcreate(H5fid, "Dataset_with_null_Ref", HDF5Constants.H5T_NATIVE_INT, sid, _pid_, + _pid_, _pid_); + assertTrue("testH5OcopyNullRef.H5Dcreate: ", did > 0); + aid = H5.H5Acreate(did, "Null_Ref", HDF5Constants.H5T_STD_REF_OBJ, sid, _pid_, _pid_); + assertTrue("testH5OcopyNullRef.H5Acreate: ", aid > 0); + } + catch (Exception ex) { + ex.printStackTrace(); + } + finally { + try { + H5.H5Dclose(did); + } + catch (Exception exx) { + } + try { + H5.H5Aclose(aid); + } + catch (Exception exx) { + } + try { + H5.H5Sclose(sid); + } + catch (Exception exx) { + } + } + + long ocp_plist_id = H5.H5Pcreate(HDF5Constants.H5P_OBJECT_COPY); + assertTrue("testH5OcopyNullRef.H5Pcreate: ", ocp_plist_id >= 0); + H5.H5Pset_copy_object(ocp_plist_id, HDF5Constants.H5O_COPY_EXPAND_REFERENCE_FLAG); + try { + H5.H5Ocopy(H5fid, "/Dataset_with_null_Ref", H5fid, "/Dataset_with_null_Ref_cp", ocp_plist_id, + _pid_); + } + finally { + try { + H5.H5Pclose(ocp_plist_id); + } + catch (Exception exx) { + } + } + } + + // @Ignore because of JIRA HDF5-9547 + // @Test(expected = HDF5LibraryException.class) + // public void testH5OcopyInvalidRef() throws Throwable { + // final long _pid_ = HDF5Constants.H5P_DEFAULT; + // long sid = HDF5Constants.H5I_INVALID_HID; + // long did = HDF5Constants.H5I_INVALID_HID; + // long aid = HDF5Constants.H5I_INVALID_HID; + // + // try { + // sid = H5.H5Screate_simple(1, new long[] {1}, null); + // assertTrue("testH5OcopyInvalidRef.H5Screate_simple: ", sid >= 0); + // did = H5.H5Dcreate(H5fid, "Dataset_with_invalid_Ref", HDF5Constants.H5T_NATIVE_INT, sid, + // _pid_, _pid_, _pid_); assertTrue("testH5OcopyInvalidRef.H5Dcreate: ", did > 0); aid = + // H5.H5Acreate(did, "Invalid_Ref", HDF5Constants.H5T_STD_REF_OBJ, sid, _pid_, _pid_); + // assertTrue("testH5OcopyInvalidRef.H5Acreate: ", aid > 0); + // H5.H5Awrite(aid, HDF5Constants.H5T_STD_REF_OBJ, new long[]{-1}); + // } + // catch (Exception ex) { + // ex.printStackTrace(); + // } + // finally { + // try {H5.H5Dclose(did);} catch (Exception exx) {} + // try {H5.H5Aclose(aid);} catch (Exception exx) {} + // try {H5.H5Sclose(sid);} catch (Exception exx) {} + // } + // + // long ocp_plist_id = H5.H5Pcreate(HDF5Constants.H5P_OBJECT_COPY); + // assertTrue("testH5OcopyInvalidRef.H5Pcreate: ", ocp_plist_id >= 0); + // H5.H5Pset_copy_object(ocp_plist_id, HDF5Constants.H5O_COPY_EXPAND_REFERENCE_FLAG); + // try { + // H5.H5Ocopy(H5fid, "/Dataset_with_invalid_Ref", H5fid, "/Dataset_with_invalid_Ref_cp", + // ocp_plist_id, _pid_); + // } + // finally { + // try {H5.H5Pclose(ocp_plist_id);} catch (Exception exx) {} + // } + // } +} |