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+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the COPYING file, which can be found at the root of the source code *
+ * distribution tree, or in https://www.hdfgroup.org/licenses. *
+ * If you do not have access to either file, you may request a copy from *
+ * help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+package test;
+
+import static org.junit.Assert.assertTrue;
+import static org.junit.Assert.fail;
+
+import java.io.File;
+import java.text.DecimalFormat;
+import java.text.NumberFormat;
+
+import hdf.hdf5lib.H5;
+import hdf.hdf5lib.HDF5Constants;
+import hdf.hdf5lib.exceptions.HDF5Exception;
+import hdf.hdf5lib.exceptions.HDF5LibraryException;
+
+import org.junit.After;
+import org.junit.Before;
+import org.junit.Rule;
+import org.junit.Test;
+import org.junit.rules.TestName;
+
+public class TestH5PData {
+ @Rule
+ public TestName testname = new TestName();
+
+ private static final String H5_FILE = "testPD.h5";
+ private static final int DIM_X = 12;
+ private static final int DIM_Y = 18;
+ long H5fid = HDF5Constants.H5I_INVALID_HID;
+ long H5dsid = HDF5Constants.H5I_INVALID_HID;
+ long H5did = HDF5Constants.H5I_INVALID_HID;
+ long plist_id = HDF5Constants.H5I_INVALID_HID;
+ long[] H5dims = {DIM_X, DIM_Y};
+ double windchillF[][] = {{36.0, 31.0, 25.0, 19.0, 13.0, 7.0, 1.0, -5.0, -11.0, -16.0, -22.0, -28.0, -34.0,
+ -40.0, -46.0, -52.0, -57.0, -63.0},
+ {34.0, 27.0, 21.0, 15.0, 9.0, 3.0, -4.0, -10.0, -16.0, -22.0, -28.0, -35.0,
+ -41.0, -47.0, -53.0, -59.0, -66.0, -72.0},
+ {32.0, 25.0, 19.0, 13.0, 6.0, 0.0, -7.0, -13.0, -19.0, -26.0, -32.0, -39.0,
+ -45.0, -51.0, -58.0, -64.0, -71.0, -77.0},
+ {30.0, 24.0, 17.0, 11.0, 4.0, -2.0, -9.0, -15.0, -22.0, -29.0, -35.0, -42.0,
+ -48.0, -55.0, -61.0, -68.0, -74.0, -81.0},
+ {29.0, 23.0, 16.0, 9.0, 3.0, -4.0, -11.0, -17.0, -24.0, -31.0, -37.0, -44.0,
+ -51.0, -58.0, -64.0, -71.0, -78.0, -84.0},
+ {28.0, 22.0, 15.0, 8.0, 1.0, -5.0, -12.0, -19.0, -26.0, -33.0, -39.0, -46.0,
+ -53.0, -60.0, -67.0, -73.0, -80.0, -87.0},
+ {28.0, 21.0, 14.0, 7.0, 0.0, -7.0, -14.0, -21.0, -27.0, -34.0, -41.0, -48.0,
+ -55.0, -62.0, -69.0, -76.0, -82.0, -89.0},
+ {27.0, 20.0, 13.0, 6.0, -1.0, -8.0, -15.0, -22.0, -29.0, -36.0, -43.0, -50.0,
+ -57.0, -64.0, -71.0, -78.0, -84.0, -91.0},
+ {26.0, 19.0, 12.0, 5.0, -2.0, -9.0, -16.0, -23.0, -30.0, -37.0, -44.0, -51.0,
+ -58.0, -65.0, -72.0, -79.0, -86.0, -93.0},
+ {26.0, 19.0, 12.0, 4.0, -3.0, -10.0, -17.0, -24.0, -31.0, -38.0, -45.0, -52.0,
+ -60.0, -67.0, -74.0, -81.0, -88.0, -95.0},
+ {25.0, 18.0, 11.0, 4.0, -3.0, -11.0, -18.0, -25.0, -32.0, -39.0, -46.0, -54.0,
+ -61.0, -68.0, -75.0, -82.0, -89.0, -97.0},
+ {25.0, 17.0, 10.0, 3.0, -4.0, -11.0, -19.0, -26.0, -33.0, -40.0, -48.0, -55.0,
+ -62.0, -69.0, -76.0, -84.0, -91.0, -98.0}};
+
+ private final void _deleteFile(String filename)
+ {
+ File file = new File(filename);
+
+ if (file.exists()) {
+ try {
+ file.delete();
+ }
+ catch (SecurityException e) {
+ }
+ }
+ }
+
+ private final long _createFloatDataset(long fid, long dsid, String name, long dapl)
+ {
+ long did = HDF5Constants.H5I_INVALID_HID;
+ try {
+ did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_NATIVE_FLOAT, dsid, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, dapl);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("H5.H5Dcreate: " + err);
+ }
+ assertTrue("TestH5PData._createFloatDataset: ", did > 0);
+
+ return did;
+ }
+
+ @Before
+ public void createH5file() throws NullPointerException, HDF5Exception
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
+ System.out.print(testname.getMethodName());
+
+ try {
+ H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
+ H5dsid = H5.H5Screate_simple(2, H5dims, null);
+ H5did = _createFloatDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
+ plist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("TestH5PData.createH5file: " + err);
+ }
+ assertTrue("TestH5PData.createH5file: H5.H5Fcreate: ", H5fid > 0);
+ assertTrue("TestH5PData.createH5file: H5.H5Screate_simple: ", H5dsid > 0);
+ assertTrue("TestH5PData.createH5file: _createFloatDataset: ", H5did > 0);
+ assertTrue(plist_id > 0);
+
+ H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
+ }
+
+ @After
+ public void deleteH5file() throws HDF5LibraryException
+ {
+ if (H5dsid > 0)
+ try {
+ H5.H5Sclose(H5dsid);
+ }
+ catch (Exception ex) {
+ }
+ if (H5did > 0)
+ try {
+ H5.H5Dclose(H5did);
+ }
+ catch (Exception ex) {
+ }
+ if (H5fid > 0)
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
+
+ _deleteFile(H5_FILE);
+
+ if (plist_id > 0)
+ try {
+ H5.H5Pclose(plist_id);
+ }
+ catch (Exception ex) {
+ }
+ System.out.println();
+ }
+
+ @Test
+ public void testH5Pdata_transform()
+ {
+ String f_to_c = "(5/9.0)*(x-32)";
+ double windchillFread[][] = new double[DIM_X][DIM_Y];
+ double windchillC;
+ NumberFormat formatter = new DecimalFormat("#0.000");
+
+ try {
+ H5.H5Pset_data_transform(plist_id, f_to_c);
+ H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ plist_id, windchillF);
+ H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, windchillFread);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("H5Pdata_transform: " + err);
+ }
+ for (int row = 0; row < DIM_X; row++)
+ for (int col = 0; col < DIM_Y; col++) {
+ windchillC = (5 / 9.0) * (windchillF[row][col] - 32);
+ String Cstr = formatter.format(windchillC);
+ String Fread = formatter.format(windchillFread[row][col]);
+ assertTrue("H5Pdata_transform: <" + row + "," + col + ">" + Fread + "=" + Cstr,
+ Fread.compareTo(Cstr) == 0);
+ }
+ }
+
+ @Test
+ public void testH5P_buffer()
+ {
+ long default_size = 0;
+ long size = 0;
+
+ try {
+ default_size = H5.H5Pget_buffer_size(plist_id);
+ H5.H5Pset_buffer_size(plist_id, DIM_X * DIM_Y);
+ size = H5.H5Pget_buffer_size(plist_id);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("H5P_buffer fail: " + err);
+ }
+ assertTrue("H5P_buffer default: " + default_size, default_size == 1024 * 1024);
+ assertTrue("H5P_buffer size: " + size, size == DIM_X * DIM_Y);
+ }
+}
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