diff options
Diffstat (limited to 'java/test/TestH5Pvirtual.java')
-rw-r--r-- | java/test/TestH5Pvirtual.java | 364 |
1 files changed, 242 insertions, 122 deletions
diff --git a/java/test/TestH5Pvirtual.java b/java/test/TestH5Pvirtual.java index 0478356..41ae6d1 100644 --- a/java/test/TestH5Pvirtual.java +++ b/java/test/TestH5Pvirtual.java @@ -32,48 +32,47 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Pvirtual { - @Rule public TestName testname = new TestName(); - - private static final String H5_FILE = "vds.h5"; - private static final String SRC_FILE[] = { - "v-0.h5", - "v-1.h5", - "v-2.h5" - }; - private static final String SRC_DATASET[] = { - "A", - "B", - "C" - }; - private static final int DIM_Y = 6; - private static final int VDSDIM_X = 4; - private static final int VDSDIM_Y = 6; - private static final int fill_value = -1; - long[] H5dims = { DIM_Y }; - long[] VDSH5dims = { VDSDIM_X, VDSDIM_Y }; - long H5fid = HDF5Constants.H5I_INVALID_HID; - long H5dsid = HDF5Constants.H5I_INVALID_HID; - long H5dssid = HDF5Constants.H5I_INVALID_HID; - long H5dvsid = HDF5Constants.H5I_INVALID_HID; - long H5did = HDF5Constants.H5I_INVALID_HID; - long H5dcplid = HDF5Constants.H5I_INVALID_HID; - long H5dapl_id = HDF5Constants.H5I_INVALID_HID; - - private final void _deleteFile(String filename) { + @Rule + public TestName testname = new TestName(); + + private static final String H5_FILE = "vds.h5"; + private static final String SRC_FILE[] = {"v-0.h5", "v-1.h5", "v-2.h5"}; + private static final String SRC_DATASET[] = {"A", "B", "C"}; + private static final int DIM_Y = 6; + private static final int VDSDIM_X = 4; + private static final int VDSDIM_Y = 6; + private static final int fill_value = -1; + long[] H5dims = {DIM_Y}; + long[] VDSH5dims = {VDSDIM_X, VDSDIM_Y}; + long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5dsid = HDF5Constants.H5I_INVALID_HID; + long H5dssid = HDF5Constants.H5I_INVALID_HID; + long H5dvsid = HDF5Constants.H5I_INVALID_HID; + long H5did = HDF5Constants.H5I_INVALID_HID; + long H5dcplid = HDF5Constants.H5I_INVALID_HID; + long H5dapl_id = HDF5Constants.H5I_INVALID_HID; + + private final void _deleteFile(String filename) + { File file = new File(filename); if (file.exists()) { - try {file.delete();} catch (SecurityException e) {} + try { + file.delete(); + } + catch (SecurityException e) { + } } } - private final long _createDataset(long fid, long dsid, String name, long dcpl, long dapl) { - long did = HDF5Constants.H5I_INVALID_HID; + private final long _createDataset(long fid, long dsid, String name, long dcpl, long dapl) + { + long did = HDF5Constants.H5I_INVALID_HID; long space_id = HDF5Constants.H5I_INVALID_HID; - long[] start = {0, 0}; + long[] start = {0, 0}; long[] stride = null; - long[] count = {1, 1}; - long[] block = {1, VDSDIM_Y}; + long[] count = {1, 1}; + long[] block = {1, VDSDIM_Y}; try { H5dssid = H5.H5Screate_simple(1, H5dims, null); @@ -83,8 +82,8 @@ public class TestH5Pvirtual { H5.H5Sselect_hyperslab(dsid, HDF5Constants.H5S_SELECT_SET, start, stride, count, block); H5.H5Pset_virtual(dcpl, dsid, SRC_FILE[i], SRC_DATASET[i], H5dssid); } - did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_NATIVE_INT, dsid, - HDF5Constants.H5P_DEFAULT, dcpl, dapl); + did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_NATIVE_INT, dsid, HDF5Constants.H5P_DEFAULT, dcpl, + dapl); } catch (Throwable err) { err.printStackTrace(); @@ -95,23 +94,26 @@ public class TestH5Pvirtual { return did; } - private final void _createH5File(long fcpl, long fapl) { + private final void _createH5File(long fcpl, long fapl) + { int[] dset_data = new int[DIM_Y]; // Create source files and datasets - for (int i=0; i < 3; i++) { + for (int i = 0; i < 3; i++) { long space_id = HDF5Constants.H5I_INVALID_HID; - long dset_id = HDF5Constants.H5I_INVALID_HID; - long file_id = HDF5Constants.H5I_INVALID_HID; - for (int j = 0; j < DIM_Y; j++) dset_data[j] = i+1; + long dset_id = HDF5Constants.H5I_INVALID_HID; + long file_id = HDF5Constants.H5I_INVALID_HID; + for (int j = 0; j < DIM_Y; j++) + dset_data[j] = i + 1; try { - file_id = H5.H5Fcreate(SRC_FILE[i], HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + file_id = H5.H5Fcreate(SRC_FILE[i], HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); space_id = H5.H5Screate_simple(1, H5dims, null); - dset_id = H5.H5Dcreate(file_id, SRC_DATASET[i], HDF5Constants.H5T_NATIVE_INT, space_id, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); - H5.H5Dwrite (dset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, - dset_data); + dset_id = H5.H5Dcreate(file_id, SRC_DATASET[i], HDF5Constants.H5T_NATIVE_INT, space_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); + H5.H5Dwrite(dset_id, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, + HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data); } catch (Throwable err) { err.printStackTrace(); @@ -119,19 +121,32 @@ public class TestH5Pvirtual { } finally { if (dset_id > 0) - try {H5.H5Dclose(dset_id);} catch (Exception ex) {} + try { + H5.H5Dclose(dset_id); + } + catch (Exception ex) { + } if (space_id > 0) - try {H5.H5Sclose(space_id);} catch (Exception ex) {} + try { + H5.H5Sclose(space_id); + } + catch (Exception ex) { + } if (file_id > 0) - try {H5.H5Fclose(file_id);} catch (Exception ex) {} + try { + H5.H5Fclose(file_id); + } + catch (Exception ex) { + } } } try { int[] fill_value = {-1}; - H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); - H5dsid = H5.H5Screate_simple(2, VDSH5dims, null); - H5dcplid = H5.H5Pcreate(HDF5Constants.H5P_DATASET_CREATE); + H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); + H5dsid = H5.H5Screate_simple(2, VDSH5dims, null); + H5dcplid = H5.H5Pcreate(HDF5Constants.H5P_DATASET_CREATE); H5.H5Pset_fill_value(H5dcplid, HDF5Constants.H5T_NATIVE_INT, fill_value); } catch (Throwable err) { @@ -151,25 +166,42 @@ public class TestH5Pvirtual { } @Before - public void createH5file() - throws NullPointerException, HDF5Exception { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void createH5file() throws NullPointerException, HDF5Exception + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); _createH5File(HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); H5dapl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_ACCESS); assertTrue("TestH5Pvirtual.createH5file: H5.H5Pcreate: ", H5dapl_id > 0); - } + } @After - public void deleteH5file() throws HDF5LibraryException { + public void deleteH5file() throws HDF5LibraryException + { if (H5dapl_id > 0) - try {H5.H5Pclose(H5dapl_id);} catch (Exception ex) {} + try { + H5.H5Pclose(H5dapl_id); + } + catch (Exception ex) { + } if (H5dcplid > 0) - try {H5.H5Pclose(H5dcplid);} catch (Exception ex) {} + try { + H5.H5Pclose(H5dcplid); + } + catch (Exception ex) { + } if (H5dsid > 0) - try {H5.H5Sclose(H5dsid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dsid); + } + catch (Exception ex) { + } if (H5fid > 0) - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } for (int i = 0; i < 3; i++) { _deleteFile(SRC_FILE[i]); } @@ -178,12 +210,13 @@ public class TestH5Pvirtual { } @Test - public void testH5Pvirtual_storage() { + public void testH5Pvirtual_storage() + { int layout = -1; H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id); try { - layout = H5.H5Pget_layout (H5dcplid); + layout = H5.H5Pget_layout(H5dcplid); } catch (Throwable err) { err.printStackTrace(); @@ -191,15 +224,24 @@ public class TestH5Pvirtual { } finally { if (H5dssid > 0) - try {H5.H5Sclose(H5dssid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dssid); + } + catch (Exception ex) { + } if (H5did > 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } } assertTrue("testH5Pvirtual_storage", HDF5Constants.H5D_VIRTUAL == layout); } @Test - public void testH5Pget_virtual_count() { + public void testH5Pget_virtual_count() + { long num_map = -1; H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id); @@ -212,21 +254,30 @@ public class TestH5Pvirtual { } finally { if (H5dssid > 0) - try {H5.H5Sclose(H5dssid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dssid); + } + catch (Exception ex) { + } if (H5did > 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } } - assertTrue("testH5Pget_virtual_count: "+num_map, num_map >= 0); + assertTrue("testH5Pget_virtual_count: " + num_map, num_map >= 0); assertEquals(3, num_map); } @Test - public void testH5Pget_source_filename() throws Throwable { + public void testH5Pget_source_filename() throws Throwable + { String filename = null; H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id); try { - filename = (H5.H5Pget_virtual_filename (H5dcplid, 2)); + filename = (H5.H5Pget_virtual_filename(H5dcplid, 2)); } catch (Throwable err) { err.printStackTrace(); @@ -234,20 +285,29 @@ public class TestH5Pvirtual { } finally { if (H5dssid > 0) - try {H5.H5Sclose(H5dssid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dssid); + } + catch (Exception ex) { + } if (H5did > 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } } - assertTrue("testH5Pget_source_filename: "+filename, filename.compareTo("v-2.h5") == 0); + assertTrue("testH5Pget_source_filename: " + filename, filename.compareTo("v-2.h5") == 0); } @Test - public void testH5Pget_source_datasetname() throws Throwable { + public void testH5Pget_source_datasetname() throws Throwable + { String datasetname = null; H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id); try { - datasetname = H5.H5Pget_virtual_dsetname (H5dcplid, 1); + datasetname = H5.H5Pget_virtual_dsetname(H5dcplid, 1); } catch (Throwable err) { err.printStackTrace(); @@ -255,21 +315,30 @@ public class TestH5Pvirtual { } finally { if (H5dssid > 0) - try {H5.H5Sclose(H5dssid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dssid); + } + catch (Exception ex) { + } if (H5did > 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } } - assertTrue("testH5Pget_source_datasetname: "+datasetname, datasetname.compareTo("B") == 0); + assertTrue("testH5Pget_source_datasetname: " + datasetname, datasetname.compareTo("B") == 0); } @Test - public void testH5Pget_selection_source_dataset() throws Throwable { - long src_space = HDF5Constants.H5I_INVALID_HID; + public void testH5Pget_selection_source_dataset() throws Throwable + { + long src_space = HDF5Constants.H5I_INVALID_HID; long src_selection = -1; H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id); try { - src_space = H5.H5Pget_virtual_srcspace (H5dcplid, 0); + src_space = H5.H5Pget_virtual_srcspace(H5dcplid, 0); src_selection = H5.H5Sget_select_type(src_space); } catch (Throwable err) { @@ -278,17 +347,30 @@ public class TestH5Pvirtual { } finally { if (src_space > 0) - try {H5.H5Sclose(src_space);} catch (Exception ex) {} + try { + H5.H5Sclose(src_space); + } + catch (Exception ex) { + } if (H5dssid > 0) - try {H5.H5Sclose(H5dssid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dssid); + } + catch (Exception ex) { + } if (H5did > 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } } assertTrue("testH5Pget_selection_source_dataset", src_selection == HDF5Constants.H5S_SEL_ALL); } @Test - public void testH5Pget_mapping_parameters() { + public void testH5Pget_mapping_parameters() + { long num_map = -1; H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id); @@ -302,22 +384,22 @@ public class TestH5Pvirtual { } for (int i = 0; i < num_map; i++) { int vselection = -1; - long vspace = -1; - long nblocks; // Number of hyperslab blocks - long blocks[] = {-1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1}; // List of blocks - long[] start = {i, 0}; - long[] stride = {1, 1}; - long[] count = {1, 1}; - long[] block = {1, VDSDIM_Y}; - long q_start[] = new long[2]; - long q_stride[] = new long[2]; - long q_count[] = new long[2]; - long q_block[] = new long[2]; + long vspace = -1; + long nblocks; // Number of hyperslab blocks + long blocks[] = {-1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1}; // List of blocks + long[] start = {i, 0}; + long[] stride = {1, 1}; + long[] count = {1, 1}; + long[] block = {1, VDSDIM_Y}; + long q_start[] = new long[2]; + long q_stride[] = new long[2]; + long q_count[] = new long[2]; + long q_block[] = new long[2]; boolean is_regular = false; try { try { - vspace = H5.H5Pget_virtual_vspace (H5dcplid, i); + vspace = H5.H5Pget_virtual_vspace(H5dcplid, i); } catch (Throwable err) { err.printStackTrace(); @@ -330,7 +412,8 @@ public class TestH5Pvirtual { err.printStackTrace(); fail("H5.H5Sget_select_type: " + err); } - assertTrue("testH5Pget_mapping_parameters["+i+"]", vselection == HDF5Constants.H5S_SEL_HYPERSLABS); + assertTrue("testH5Pget_mapping_parameters[" + i + "]", + vselection == HDF5Constants.H5S_SEL_HYPERSLABS); // Verify that there is only one block nblocks = H5.H5Sget_select_hyper_nblocks(vspace); @@ -340,30 +423,38 @@ public class TestH5Pvirtual { H5.H5Sget_select_hyper_blocklist(vspace, 0, nblocks, blocks); // Verify that the correct block is defined - assertTrue("H5.H5Sget_select_hyper_blocklist["+i+"] [0]: "+blocks[0], start[0] == blocks[0]); - assertTrue("H5.H5Sget_select_hyper_blocklist["+i+"] [1]: "+blocks[1], start[1] == blocks[1]); - assertTrue("H5.H5Sget_select_hyper_blocklist["+i+"] [2]: "+blocks[2], (block[0]-1+i) == blocks[2]); - assertTrue("H5.H5Sget_select_hyper_blocklist["+i+"] [3]: "+blocks[3], (block[1]-1) == blocks[3]); + assertTrue("H5.H5Sget_select_hyper_blocklist[" + i + "] [0]: " + blocks[0], + start[0] == blocks[0]); + assertTrue("H5.H5Sget_select_hyper_blocklist[" + i + "] [1]: " + blocks[1], + start[1] == blocks[1]); + assertTrue("H5.H5Sget_select_hyper_blocklist[" + i + "] [2]: " + blocks[2], + (block[0] - 1 + i) == blocks[2]); + assertTrue("H5.H5Sget_select_hyper_blocklist[" + i + "] [3]: " + blocks[3], + (block[1] - 1) == blocks[3]); // We also can use new APIs to get start, stride, count and block is_regular = H5.H5Sis_regular_hyperslab(vspace); assertTrue("H5.H5Sis_regular_hyperslab", is_regular); - H5.H5Sget_regular_hyperslab (vspace, q_start, q_stride, q_count, q_block); + H5.H5Sget_regular_hyperslab(vspace, q_start, q_stride, q_count, q_block); // Verify the hyperslab parameters - for(int u = 0; u < 2; u++) { + for (int u = 0; u < 2; u++) { assertTrue("H5Sget_regular_hyperslab, start", start[u] == q_start[u]); assertTrue("H5Sget_regular_hyperslab, stride", stride[u] == q_stride[u]); assertTrue("H5Sget_regular_hyperslab, count", count[u] == q_count[u]); assertTrue("H5Sget_regular_hyperslab, block", block[u] == q_block[u]); } - } + } catch (Throwable err) { err.printStackTrace(); fail("H5.testH5Pget_mapping_parameters: " + err); } finally { if (vspace > 0) - try {H5.H5Sclose(vspace);} catch (Exception ex) {} + try { + H5.H5Sclose(vspace); + } + catch (Exception ex) { + } } } } @@ -373,16 +464,25 @@ public class TestH5Pvirtual { } finally { if (H5dssid > 0) - try {H5.H5Sclose(H5dssid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dssid); + } + catch (Exception ex) { + } if (H5did > 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } } } @Test - public void testH5Pset_get_virtual_view() { + public void testH5Pset_get_virtual_view() + { int ret_val = -1; - H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id); + H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id); try { ret_val = H5.H5Pget_virtual_view(H5dapl_id); assertTrue("H5Pget_virtual_view", ret_val >= 0); @@ -398,16 +498,25 @@ public class TestH5Pvirtual { } finally { if (H5dssid > 0) - try {H5.H5Sclose(H5dssid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dssid); + } + catch (Exception ex) { + } if (H5did > 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } } } @Test - public void testH5Pset_get_virtual_printf_gap() { + public void testH5Pset_get_virtual_printf_gap() + { long ret_val = -1; - H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id); + H5did = _createDataset(H5fid, H5dsid, "VDS", H5dcplid, H5dapl_id); try { ret_val = H5.H5Pget_virtual_printf_gap(H5dapl_id); assertTrue("H5Pget_virtual_printf_gap", ret_val >= 0); @@ -423,14 +532,23 @@ public class TestH5Pvirtual { } finally { if (H5dssid > 0) - try {H5.H5Sclose(H5dssid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dssid); + } + catch (Exception ex) { + } if (H5did > 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } } } @Test - public void testH5Pset_virtual_prefix() { + public void testH5Pset_virtual_prefix() + { String prefix = "tmp"; try { H5.H5Pset_virtual_prefix(H5dapl_id, prefix); @@ -442,14 +560,16 @@ public class TestH5Pvirtual { } @Test(expected = NullPointerException.class) - public void testH5Pset_virtual_prefix_null() throws Throwable{ + public void testH5Pset_virtual_prefix_null() throws Throwable + { H5.H5Pset_virtual_prefix(H5dapl_id, null); } @Test - public void testH5Pget_virtual_prefix() { + public void testH5Pget_virtual_prefix() + { String prefix = "tmp"; - String pre = ""; + String pre = ""; try { H5.H5Pset_virtual_prefix(H5dapl_id, prefix); |