diff options
Diffstat (limited to 'java/test/TestH5R.java')
| -rw-r--r-- | java/test/TestH5R.java | 469 |
1 files changed, 469 insertions, 0 deletions
diff --git a/java/test/TestH5R.java b/java/test/TestH5R.java index a8e7387..54ff9c2 100644 --- a/java/test/TestH5R.java +++ b/java/test/TestH5R.java @@ -19,6 +19,9 @@ import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; import java.io.File; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.List; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; @@ -407,4 +410,470 @@ public class TestH5R { ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1); H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref1); } + + @Test + public void testH5RVLattr_ref() + { + String attr_obj_name = "VLObjRefdata"; + String attr_reg_name = "VLRegRefdata"; + long attr_obj_id = HDF5Constants.H5I_INVALID_HID; + long attr_reg_id = HDF5Constants.H5I_INVALID_HID; + long atype_obj_id = HDF5Constants.H5I_INVALID_HID; + long atype_reg_id = HDF5Constants.H5I_INVALID_HID; + long aspace_id = HDF5Constants.H5I_INVALID_HID; + long[] dims = {4}; + long lsize = 1; + byte[] ref1 = null; + byte[] ref2 = null; + byte[] ref3 = null; + byte[] ref4 = null; + + try { + // Create reference on dataset + ref1 = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid); + assertNotNull(ref1); + ref2 = H5.H5Rcreate(H5gid, "dset2", HDF5Constants.H5R_DATASET_REGION, H5dsid); + assertNotNull(ref2); + ref3 = H5.H5Rcreate(H5gid, "/dset", HDF5Constants.H5R_OBJECT, -1); + assertNotNull(ref3); + + // Create reference on group + ref4 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1); + assertNotNull(ref3); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5RVLattr_ref: " + err); + } + + ArrayList[] vl_obj_data = new ArrayList[4]; + ArrayList[] vl_reg_data = new ArrayList[4]; + try { + // Write Object Reference data + vl_obj_data[0] = new ArrayList<byte[]>(Arrays.asList(ref3)); + vl_obj_data[1] = new ArrayList<byte[]>(Arrays.asList(ref3, ref4)); + vl_obj_data[2] = new ArrayList<byte[]>(Arrays.asList(ref3, ref3, ref3)); + vl_obj_data[3] = new ArrayList<byte[]>(Arrays.asList(ref4, ref4, ref4, ref4)); + Class dataClass = vl_obj_data.getClass(); + assertTrue("testH5RVLattr_ref.getClass: " + dataClass, dataClass.isArray()); + + try { + atype_obj_id = H5.H5Tvlen_create(HDF5Constants.H5T_STD_REF_OBJ); + assertTrue("testH5RVLattr_ref.H5Tvlen_create: ", atype_obj_id >= 0); + } + catch (Exception err) { + if (atype_obj_id > 0) + try { + H5.H5Tclose(atype_obj_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5RVLattr_ref: " + err); + } + + try { + aspace_id = H5.H5Screate_simple(1, dims, null); + assertTrue(aspace_id > 0); + attr_obj_id = H5.H5Acreate(H5did, attr_obj_name, atype_obj_id, aspace_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + assertTrue("testH5RVLattr_ref: ", attr_obj_id >= 0); + + H5.H5AwriteVL(attr_obj_id, atype_obj_id, vl_obj_data); + } + catch (Exception err) { + if (attr_obj_id > 0) + try { + H5.H5Aclose(attr_obj_id); + } + catch (Exception ex) { + } + if (atype_obj_id > 0) + try { + H5.H5Tclose(atype_obj_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5RVLattr_ref: " + err); + } + finally { + if (aspace_id > 0) + try { + H5.H5Sclose(aspace_id); + } + catch (Exception ex) { + } + } + + // Write Region Reference data + vl_reg_data[0] = new ArrayList<byte[]>(Arrays.asList(ref1)); + vl_reg_data[1] = new ArrayList<byte[]>(Arrays.asList(ref1, ref2)); + vl_reg_data[2] = new ArrayList<byte[]>(Arrays.asList(ref1, ref1, ref1)); + vl_reg_data[3] = new ArrayList<byte[]>(Arrays.asList(ref2, ref2, ref2, ref2)); + dataClass = vl_reg_data.getClass(); + assertTrue("testH5RVLattr_ref.getClass: " + dataClass, dataClass.isArray()); + + try { + atype_reg_id = H5.H5Tvlen_create(HDF5Constants.H5T_STD_REF_DSETREG); + assertTrue("testH5RVLattr_ref.H5Tvlen_create: ", atype_reg_id >= 0); + } + catch (Exception err) { + if (atype_reg_id > 0) + try { + H5.H5Tclose(atype_reg_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5RVLattr_ref: " + err); + } + + try { + aspace_id = H5.H5Screate_simple(1, dims, null); + assertTrue(aspace_id > 0); + attr_reg_id = H5.H5Acreate(H5did, attr_reg_name, atype_reg_id, aspace_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + assertTrue("testH5RVLattr_ref: ", attr_reg_id >= 0); + + H5.H5AwriteVL(attr_reg_id, atype_reg_id, vl_reg_data); + } + catch (Exception err) { + if (attr_reg_id > 0) + try { + H5.H5Aclose(attr_reg_id); + } + catch (Exception ex) { + } + if (atype_reg_id > 0) + try { + H5.H5Tclose(atype_reg_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5RVLattr_ref: " + err); + } + finally { + if (aspace_id > 0) + try { + H5.H5Sclose(aspace_id); + } + catch (Exception ex) { + } + } + + H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); + + for (int j = 0; j < dims.length; j++) { + lsize *= dims[j]; + } + + // Read Object Reference data + ArrayList[] vl_readbuf = new ArrayList[4]; + for (int j = 0; j < lsize; j++) + vl_readbuf[j] = new ArrayList<byte[]>(); + + try { + H5.H5AreadVL(attr_obj_id, atype_obj_id, vl_readbuf); + } + catch (Exception ex) { + ex.printStackTrace(); + } + assertTrue("testH5RVLattr_ref:" + ((byte[])vl_readbuf[0].get(0))[0], + ((byte[])vl_obj_data[0].get(0))[0] == ((byte[])vl_readbuf[0].get(0))[0]); + assertTrue("testH5RVLattr_ref:" + ((byte[])vl_readbuf[1].get(0))[0], + ((byte[])vl_obj_data[1].get(0))[0] == ((byte[])vl_readbuf[1].get(0))[0]); + assertTrue("testH5RVLattr_ref:" + ((byte[])vl_readbuf[2].get(0))[0], + ((byte[])vl_obj_data[2].get(0))[0] == ((byte[])vl_readbuf[2].get(0))[0]); + assertTrue("testH5RVLattr_ref:" + ((byte[])vl_readbuf[3].get(0))[0], + ((byte[])vl_obj_data[3].get(0))[0] == ((byte[])vl_readbuf[3].get(0))[0]); + + // Read Region Reference data + vl_readbuf = new ArrayList[4]; + for (int j = 0; j < lsize; j++) + vl_readbuf[j] = new ArrayList<byte[]>(); + + try { + H5.H5AreadVL(attr_reg_id, atype_reg_id, vl_readbuf); + } + catch (Exception ex) { + ex.printStackTrace(); + } + assertTrue("testH5RVLattr_ref:" + ((byte[])vl_readbuf[0].get(0))[0], + ((byte[])vl_reg_data[0].get(0))[0] == ((byte[])vl_readbuf[0].get(0))[0]); + assertTrue("testH5RVLattr_ref:" + ((byte[])vl_readbuf[1].get(0))[0], + ((byte[])vl_reg_data[1].get(0))[0] == ((byte[])vl_readbuf[1].get(0))[0]); + assertTrue("testH5RVLattr_ref:" + ((byte[])vl_readbuf[2].get(0))[0], + ((byte[])vl_reg_data[2].get(0))[0] == ((byte[])vl_readbuf[2].get(0))[0]); + assertTrue("testH5RVLattr_ref:" + ((byte[])vl_readbuf[3].get(0))[0], + ((byte[])vl_reg_data[3].get(0))[0] == ((byte[])vl_readbuf[3].get(0))[0]); + } + catch (Throwable err) { + err.printStackTrace(); + fail("H5.testH5RVLattr_ref: " + err); + } + finally { + if (attr_reg_id > 0) + try { + H5.H5Aclose(attr_reg_id); + } + catch (Exception ex) { + } + if (attr_obj_id > 0) + try { + H5.H5Aclose(attr_obj_id); + } + catch (Exception ex) { + } + if (atype_reg_id > 0) + try { + H5.H5Tclose(atype_reg_id); + } + catch (Exception ex) { + } + if (atype_obj_id > 0) + try { + H5.H5Tclose(atype_obj_id); + } + catch (Exception ex) { + } + } + } + + @Test + public void testH5RVLdset_ref() + { + String dset_obj_name = "VLObjRefdata"; + String dset_reg_name = "VLRegRefdata"; + long dset_obj_id = HDF5Constants.H5I_INVALID_HID; + long dset_reg_id = HDF5Constants.H5I_INVALID_HID; + long dtype_obj_id = HDF5Constants.H5I_INVALID_HID; + long dtype_reg_id = HDF5Constants.H5I_INVALID_HID; + long dspace_id = HDF5Constants.H5I_INVALID_HID; + long[] dims = {4}; + long lsize = 1; + byte[] ref1 = null; + byte[] ref2 = null; + byte[] ref3 = null; + byte[] ref4 = null; + + try { + // Create reference on dataset + ref1 = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid); + assertNotNull(ref1); + ref2 = H5.H5Rcreate(H5gid, "dset2", HDF5Constants.H5R_DATASET_REGION, H5dsid); + assertNotNull(ref2); + ref3 = H5.H5Rcreate(H5gid, "/dset", HDF5Constants.H5R_OBJECT, -1); + assertNotNull(ref3); + + // Create reference on group + ref4 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1); + assertNotNull(ref3); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5RVLattr_ref: " + err); + } + + ArrayList[] vl_obj_data = new ArrayList[4]; + ArrayList[] vl_reg_data = new ArrayList[4]; + try { + // Write Object Reference data + vl_obj_data[0] = new ArrayList<byte[]>(Arrays.asList(ref3)); + vl_obj_data[1] = new ArrayList<byte[]>(Arrays.asList(ref3, ref4)); + vl_obj_data[2] = new ArrayList<byte[]>(Arrays.asList(ref3, ref3, ref3)); + vl_obj_data[3] = new ArrayList<byte[]>(Arrays.asList(ref4, ref4, ref4, ref4)); + Class dataClass = vl_obj_data.getClass(); + assertTrue("testH5RVLdset_ref.getClass: " + dataClass, dataClass.isArray()); + + try { + dtype_obj_id = H5.H5Tvlen_create(HDF5Constants.H5T_STD_REF_OBJ); + assertTrue("testH5RVLdset_ref.H5Tvlen_create: ", dtype_obj_id >= 0); + } + catch (Exception err) { + if (dtype_obj_id > 0) + try { + H5.H5Tclose(dtype_obj_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5RVLdset_ref: " + err); + } + + try { + dspace_id = H5.H5Screate_simple(1, dims, null); + assertTrue(dspace_id > 0); + dset_obj_id = + H5.H5Dcreate(H5fid, dset_obj_name, dtype_obj_id, dspace_id, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + assertTrue("testH5RVLdset_ref: ", dset_obj_id >= 0); + + H5.H5DwriteVL(dset_obj_id, dtype_obj_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, vl_obj_data); + } + catch (Exception err) { + if (dset_obj_id > 0) + try { + H5.H5Dclose(dset_obj_id); + } + catch (Exception ex) { + } + if (dtype_obj_id > 0) + try { + H5.H5Tclose(dtype_obj_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5RVLdset_ref: " + err); + } + finally { + if (dspace_id > 0) + try { + H5.H5Sclose(dspace_id); + } + catch (Exception ex) { + } + } + + // Write Region Reference data + vl_reg_data[0] = new ArrayList<byte[]>(Arrays.asList(ref1)); + vl_reg_data[1] = new ArrayList<byte[]>(Arrays.asList(ref1, ref2)); + vl_reg_data[2] = new ArrayList<byte[]>(Arrays.asList(ref1, ref1, ref1)); + vl_reg_data[3] = new ArrayList<byte[]>(Arrays.asList(ref2, ref2, ref2, ref2)); + dataClass = vl_reg_data.getClass(); + assertTrue("testH5RVLdset_ref.getClass: " + dataClass, dataClass.isArray()); + + try { + dtype_reg_id = H5.H5Tvlen_create(HDF5Constants.H5T_STD_REF_DSETREG); + assertTrue("testH5RVLdset_ref.H5Tvlen_create: ", dtype_reg_id >= 0); + } + catch (Exception err) { + if (dtype_reg_id > 0) + try { + H5.H5Tclose(dtype_reg_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5RVLdset_ref: " + err); + } + + try { + dspace_id = H5.H5Screate_simple(1, dims, null); + assertTrue(dspace_id > 0); + dset_reg_id = + H5.H5Dcreate(H5fid, dset_reg_name, dtype_reg_id, dspace_id, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + assertTrue("testH5RVLdset_ref: ", dset_reg_id >= 0); + + H5.H5DwriteVL(dset_reg_id, dtype_reg_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, vl_reg_data); + } + catch (Exception err) { + if (dset_reg_id > 0) + try { + H5.H5Dclose(dset_reg_id); + } + catch (Exception ex) { + } + if (dtype_reg_id > 0) + try { + H5.H5Tclose(dtype_reg_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5RVLdset_ref: " + err); + } + finally { + if (dspace_id > 0) + try { + H5.H5Sclose(dspace_id); + } + catch (Exception ex) { + } + } + + H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); + + for (int j = 0; j < dims.length; j++) { + lsize *= dims[j]; + } + + // Read Object Reference data + ArrayList[] vl_readbuf = new ArrayList[4]; + for (int j = 0; j < lsize; j++) + vl_readbuf[j] = new ArrayList<byte[]>(); + + try { + H5.H5DreadVL(dset_obj_id, dtype_obj_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, vl_readbuf); + } + catch (Exception ex) { + ex.printStackTrace(); + } + assertTrue("testH5RVLdset_ref:" + ((byte[])vl_readbuf[0].get(0))[0], + ((byte[])vl_obj_data[0].get(0))[0] == ((byte[])vl_readbuf[0].get(0))[0]); + assertTrue("testH5RVLdset_ref:" + ((byte[])vl_readbuf[1].get(0))[0], + ((byte[])vl_obj_data[1].get(0))[0] == ((byte[])vl_readbuf[1].get(0))[0]); + assertTrue("testH5RVLdset_ref:" + ((byte[])vl_readbuf[2].get(0))[0], + ((byte[])vl_obj_data[2].get(0))[0] == ((byte[])vl_readbuf[2].get(0))[0]); + assertTrue("testH5RVLdset_ref:" + ((byte[])vl_readbuf[3].get(0))[0], + ((byte[])vl_obj_data[3].get(0))[0] == ((byte[])vl_readbuf[3].get(0))[0]); + + // Read Region Reference data + vl_readbuf = new ArrayList[4]; + for (int j = 0; j < lsize; j++) + vl_readbuf[j] = new ArrayList<byte[]>(); + + try { + H5.H5DreadVL(dset_reg_id, dtype_reg_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, vl_readbuf); + } + catch (Exception ex) { + ex.printStackTrace(); + } + assertTrue("testH5RVLdset_ref:" + ((byte[])vl_readbuf[0].get(0))[0], + ((byte[])vl_reg_data[0].get(0))[0] == ((byte[])vl_readbuf[0].get(0))[0]); + assertTrue("testH5RVLdset_ref:" + ((byte[])vl_readbuf[1].get(0))[0], + ((byte[])vl_reg_data[1].get(0))[0] == ((byte[])vl_readbuf[1].get(0))[0]); + assertTrue("testH5RVLdset_ref:" + ((byte[])vl_readbuf[2].get(0))[0], + ((byte[])vl_reg_data[2].get(0))[0] == ((byte[])vl_readbuf[2].get(0))[0]); + assertTrue("testH5RVLdset_ref:" + ((byte[])vl_readbuf[3].get(0))[0], + ((byte[])vl_reg_data[3].get(0))[0] == ((byte[])vl_readbuf[3].get(0))[0]); + } + catch (Throwable err) { + err.printStackTrace(); + fail("H5.testH5RVLdset_ref: " + err); + } + finally { + if (dset_reg_id > 0) + try { + H5.H5Dclose(dset_reg_id); + } + catch (Exception ex) { + } + if (dset_obj_id > 0) + try { + H5.H5Dclose(dset_obj_id); + } + catch (Exception ex) { + } + if (dtype_reg_id > 0) + try { + H5.H5Tclose(dtype_reg_id); + } + catch (Exception ex) { + } + if (dtype_obj_id > 0) + try { + H5.H5Tclose(dtype_obj_id); + } + catch (Exception ex) { + } + } + } } |