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-rw-r--r--java/test/TestH5R.java400
1 files changed, 275 insertions, 125 deletions
diff --git a/java/test/TestH5R.java b/java/test/TestH5R.java
index 5349855..031b8e4 100644
--- a/java/test/TestH5R.java
+++ b/java/test/TestH5R.java
@@ -1,12 +1,11 @@
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
- * Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
+ * distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -14,6 +13,7 @@
package test;
import static org.junit.Assert.assertEquals;
+import static org.junit.Assert.assertFalse;
import static org.junit.Assert.assertNotNull;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
@@ -24,9 +24,11 @@ import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
import hdf.hdf5lib.exceptions.HDF5Exception;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
+import hdf.hdf5lib.exceptions.HDF5FunctionArgumentException;
import org.junit.After;
import org.junit.Before;
+import org.junit.Ignore;
import org.junit.Rule;
import org.junit.Test;
import org.junit.rules.TestName;
@@ -36,12 +38,14 @@ public class TestH5R {
private static final String H5_FILE = "testH5R.h5";
private static final int DIM_X = 4;
private static final int DIM_Y = 6;
- long H5fid = -1;
- long H5dsid = -1;
- long H5did = -1;
- long H5gid = -1;
- long H5did2 = -1;
+ long H5fid = HDF5Constants.H5I_INVALID_HID;
+ long H5dsid = HDF5Constants.H5I_INVALID_HID;
+ long H5did = HDF5Constants.H5I_INVALID_HID;
+ long H5gid = HDF5Constants.H5I_INVALID_HID;
+ long H5did2 = HDF5Constants.H5I_INVALID_HID;
long[] H5dims = { DIM_X, DIM_Y };
+ int[][] dset_data = new int[DIM_X][DIM_Y];
+ int FILLVAL = 99;
private final void _deleteFile(String filename) {
File file = null;
@@ -51,12 +55,13 @@ public class TestH5R {
catch (Throwable err) {}
if (file.exists()) {
- try {file.delete();} catch (SecurityException e) {}
+ try {file.delete();} catch (SecurityException e) {e.printStackTrace();}
}
+ assertFalse("TestH5R._deleteFile file still exists ", file.exists());
}
private final long _createDataset(long fid, long dsid, String name, long dapl) {
- long did = -1;
+ long did = HDF5Constants.H5I_INVALID_HID;
try {
did = H5.H5Dcreate(fid, name,
HDF5Constants.H5T_STD_I32BE, dsid,
@@ -66,13 +71,13 @@ public class TestH5R {
err.printStackTrace();
fail("H5.H5Dcreate: " + err);
}
- assertTrue("TestH5R._createDataset: ",did > 0);
+ assertTrue("TestH5R._createDataset: ", did > 0);
return did;
}
private final long _createGroup(long fid, String name) {
- long gid = -1;
+ long gid = HDF5Constants.H5I_INVALID_HID;
try {
gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
@@ -100,6 +105,21 @@ public class TestH5R {
H5did2 = _createDataset(H5gid, H5dsid, "dset2", HDF5Constants.H5P_DEFAULT);
H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
+ // Initialize the dataset.
+ for (int indx = 0; indx < DIM_X; indx++)
+ for (int jndx = 0; jndx < DIM_Y; jndx++)
+ dset_data[indx][jndx] = FILLVAL;
+
+ try {
+ if (H5did >= 0)
+ H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT,
+ HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, dset_data[0]);
+ }
+ catch (Exception e) {
+ e.printStackTrace();
+ }
+
}
catch (Throwable err) {
err.printStackTrace();
@@ -129,205 +149,335 @@ public class TestH5R {
System.out.println();
}
+ // Test v1.12 APIs params
+
@Test
- public void testH5Rget_name() {
- long loc_id=H5fid;
- int ref_type=HDF5Constants.H5R_OBJECT;
- long ret_val=-1;
- byte[] ref=null;
- String[] name= {""};
+ public void testH5Rget_object() {
+ int ref_type = HDF5Constants.H5R_OBJECT2;
+ long ret_val = -1;
+ byte[] ref = null;
+ String name = "";
String objName = "/dset";
try {
- ref = H5.H5Rcreate(H5fid, objName, ref_type, -1);
+ ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
- fail("H5.H5Rget_name:H5Rcreate " + err);
+ fail("testH5Rget_object: H5Rcreate_object " + err);
}
try {
- ret_val = H5.H5Rget_name(loc_id, ref_type, ref, name, 16);
+ ret_val = H5.H5Rget_type(ref);
}
catch (Throwable err) {
err.printStackTrace();
- fail("H5.H5Rget_name: " + err);
+ fail("testH5Rget_object: H5Rget_type: " + err);
}
-
- assertTrue("testH5Rget_name: H5Rget_name", ret_val>0);
- assertTrue("The name of the object: ", objName.equals(name[0]));
- }
-
- @Test
- public void testH5Rget_obj_type2() {
- int ref_type=HDF5Constants.H5R_OBJECT;
- byte[] ref=null;
-
- String objName = "/dset";
- int obj_type = -1;;
+ assertTrue("testH5Rget_object: H5Rget_type", ret_val == ref_type);
try {
- ref = H5.H5Rcreate(H5fid, objName, ref_type, -1);
+ name = H5.H5Rget_file_name(ref);
}
- catch(Throwable err) {
+ catch (Throwable err) {
err.printStackTrace();
+ fail("testH5Rget_object: H5Rget_file_name: " + err);
}
+ assertTrue("testH5Rget_object: H5Rget_file_name", H5_FILE.equals(name));
try {
- obj_type = H5.H5Rget_obj_type(H5fid, HDF5Constants.H5R_OBJECT, ref);
+ name = H5.H5Rget_obj_name(ref, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
- fail("H5.H5Rget_obj_type2: " + err);
+ fail("testH5Rget_object: H5Rget_obj_name: " + err);
}
- assertEquals(obj_type, HDF5Constants.H5O_TYPE_DATASET);
+ assertTrue("The name of the object: ", objName.equals(name));
+ H5.H5Rdestroy(ref);
}
@Test
- public void testH5Rcreate_refobj() {
+ public void testH5Rget_obj_type3() {
+ int obj_type = -1;
byte[] ref = null;
+ String objName = "/dset";
try {
- ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, -1);
+ ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
- fail("H5.H5Rcreate: " + err);
+ fail("testH5Rget_obj_type3: H5Rcreate_object " + err);
}
- assertNotNull(ref);
- }
- @Test
- public void testH5Rcreate_regionrefobj() {
- byte[] ref = null;
try {
- ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid);
+ obj_type = H5.H5Rget_obj_type3(ref, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
- fail("H5.H5Rcreate: " + err);
+ fail("testH5Rget_obj_type3: H5.H5Rget_obj_type3: " + err);
}
- assertNotNull(ref);
+ assertEquals(obj_type, HDF5Constants.H5O_TYPE_DATASET);
+ H5.H5Rdestroy(ref);
}
@Test
- public void testH5Rdereference() {
- byte[] ref1 = null;
- byte[] ref2 = null;
- long dataset_id = -1;
- long group_id = -1;
+ public void testH5Rcreate_regionref_object() {
+ byte[] ref = null;
+ String objName = "/dset";
+ long start[] = {2,2}; // Starting location of hyperslab
+ long stride[] = {1,1}; // Stride of hyperslab
+ long count[] = {1,1}; // Element count of hyperslab
+ long block[] = {3,3}; // Block size of hyperslab
+
+ // Select 3x3 hyperslab for reference
try {
- //Create reference on dataset
- ref1 = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid);
- dataset_id= H5.H5Rdereference(H5fid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_DATASET_REGION, ref1);
-
- //Create reference on group
- ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1);
- group_id= H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref2);
- assertNotNull(ref1);
- assertNotNull(ref2);
- assertTrue(dataset_id>=0);
- assertTrue(group_id>=0);
+ H5.H5Sselect_hyperslab(H5dsid, HDF5Constants.H5S_SELECT_SET, start, stride, count, block);
}
catch (Throwable err) {
err.printStackTrace();
- fail("TestH5Rdereference " + err);
- }
- finally {
- try {H5.H5Dclose(dataset_id);} catch (Exception ex) {}
- try {H5.H5Gclose(group_id);} catch (Exception ex) {}
+ fail("testH5Rget_object: H5Sselect_hyperslab " + err);
}
- }
-
- @Test
- public void testH5Rget_region() {
- byte[] ref = null;
- long dsid = -1;
try {
- ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid);
- dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref);
- assertNotNull(ref);
- assertTrue(dsid>=0);
+ ref = H5.H5Rcreate_region(H5fid, objName, H5dsid, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
- fail("TestH5Rget_region: " + err);
- }
- finally {
- try {H5.H5Sclose(dsid);} catch (Exception ex) {}
+ fail("testH5Rget_object: H5Rcreate_region " + err);
}
+ assertNotNull(ref);
+ H5.H5Rdestroy(ref);
}
- @Test(expected = IllegalArgumentException.class)
- public void testH5Rget_name_Invalidreftype() throws Throwable {
- byte[] ref = null;
- String[] name= {""};
- ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, -1);
- H5.H5Rget_name(H5fid, HDF5Constants.H5R_DATASET_REGION, ref, name, 16);
+// These tests need to be updated with new APIs
+// @Test//
+// public void testH5Rget_group() {
+// long loc_id = H5fid;
+// int ref_type = HDF5Constants.H5R_OBJECT2;
+// long ret_val = -1;
+// byte[] ref = null;
+// String name = "";
+// String objName = "/dset";
+//
+// try {
+// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
+// }
+// catch (Throwable err) {
+// err.printStackTrace();
+// fail("testH5Rget_object: H5Rcreate_object " + err);
+// }
+// try {
+// dataset_id= H5.H5Rdereference(H5fid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_DATASET_REGION, ref1);
+//
+// //Create reference on group
+// ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1);
+// group_id= H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref2);
+// assertNotNull(ref1);
+// assertNotNull(ref2);
+// assertTrue(dataset_id >= 0);
+// assertTrue(group_id >= 0);
+// }
+// catch (Throwable err) {
+// err.printStackTrace();
+// fail("TestH5Rdereference " + err);
+// }
+// finally {
+// try {H5.H5Dclose(dataset_id);} catch (Exception ex) {}
+// try {H5.H5Gclose(group_id);} catch (Exception ex) {}
+// }
+// }
+
+// @Test//
+// public void testH5Rget_region_dataset() {
+// long loc_id = H5fid;
+// int ref_type = HDF5Constants.H5R_OBJECT2;
+// long ret_val = -1;
+// byte[] ref = null;
+// String name = "";
+// String objName = "/dset";
+//
+// try {
+// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
+// }
+// catch (Throwable err) {
+// err.printStackTrace();
+// fail("testH5Rget_object: H5Rcreate_object " + err);
+// }
+// try {
+// dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref);
+// assertNotNull(ref);
+// assertTrue(dsid >= 0);
+// }
+// catch (Throwable err) {
+// err.printStackTrace();
+// fail("TestH5Rget_region: " + err);
+// }
+// finally {
+// try {H5.H5Sclose(dsid);} catch (Exception ex) {}
+// }
+// }
+
+// @Test//
+// public void testH5Rget_attr() {
+// long loc_id = H5fid;
+// int ref_type = HDF5Constants.H5R_OBJECT2;
+// long ret_val = -1;
+// byte[] ref = null;
+// String name = "";
+// String objName = "/dset";
+//
+// try {
+// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
+// }
+// catch (Throwable err) {
+// err.printStackTrace();
+// fail("testH5Rget_object: H5Rcreate_object " + err);
+// }
+// try {
+// dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref);
+// assertNotNull(ref);
+// assertTrue(dsid >= 0);
+// }
+// catch (Throwable err) {
+// err.printStackTrace();
+// fail("TestH5Rget_region: " + err);
+// }
+// finally {
+// try {H5.H5Sclose(dsid);} catch (Exception ex) {}
+// }
+// }
+
+ // Test parameters to H5Rcreate_object
+ @Test(expected = NullPointerException.class)
+ public void testH5Rcreate_object_Nullname() throws Throwable {
+ String name = null;
+ H5.H5Rcreate_object(H5fid, name, HDF5Constants.H5P_DEFAULT);
+ }
+
+ @Test(expected = HDF5FunctionArgumentException.class)
+ public void testH5Rget_name_Invalidloc() throws Throwable {
+ String name= "";
+ H5.H5Rcreate_object(-1, name, HDF5Constants.H5P_DEFAULT);
}
+ // Test parameters to H5Rcreate_region
@Test(expected = NullPointerException.class)
- public void testH5Rget_name_NULLreference() throws Throwable {
+ public void testH5Rcreate_region_Nullname() throws Throwable {
+ String name = null;
+ H5.H5Rcreate_region(H5fid, name, -1, HDF5Constants.H5P_DEFAULT);
+ }
+
+ @Test(expected = HDF5FunctionArgumentException.class)
+ public void testH5Rcreate_region_Invalidloc() throws Throwable {
+ String name= "";
+ H5.H5Rcreate_region(-1, name, -1, HDF5Constants.H5P_DEFAULT);
+ }
+
+ // Test parameters to H5Rcreate_attr
+ @Test(expected = NullPointerException.class)
+ public void testH5Rcreate_attr_Nullname() throws Throwable {
+ String name = null;
+ String attrname = "";
+ H5.H5Rcreate_attr(H5fid, name, attrname, HDF5Constants.H5P_DEFAULT);
+ }
+
+ @Test(expected = NullPointerException.class)
+ public void testH5Rcreate_attr_Nullattrname() throws Throwable {
+ String name = "";
+ String attrname = null;
+ H5.H5Rcreate_attr(H5fid, name, attrname, HDF5Constants.H5P_DEFAULT);
+ }
+
+ @Test(expected = HDF5FunctionArgumentException.class)
+ public void testH5Rcreate_attr_Invalidloc() throws Throwable {
+ String name= "";
+ String attrname= "";
+ H5.H5Rcreate_attr(-1, name, attrname, HDF5Constants.H5P_DEFAULT);
+ }
+
+ // Test parameters to H5Rdestroy
+ @Test(expected = NullPointerException.class)
+ public void testH5Rdestroy_Nullref() throws Throwable {
byte[] ref = null;
- String[] name= {""};
- H5.H5Rget_name(H5fid, HDF5Constants.H5R_OBJECT, ref, name, 16);
+ H5.H5Rdestroy(ref);
}
- @Test(expected = HDF5LibraryException.class)
- public void testH5Rget_obj_type2_Invalidreftype() throws Throwable {
+ // Test parameters to H5Rget_type
+ @Test(expected = NullPointerException.class)
+ public void testH5Rget_type_Nullref() throws Throwable {
byte[] ref = null;
- ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, -1);
- H5.H5Rget_obj_type(H5fid, HDF5Constants.H5R_DATASET_REGION, ref);
+ H5.H5Rget_type(ref);
+ }
+
+ // Test parameters to H5Requal
+ @Test(expected = NullPointerException.class)
+ public void testH5Requal_Nullref1() throws Throwable {
+ byte[] ref1 = null;
+ byte[] ref2 = {0,0,0,0};
+ H5.H5Requal(ref1, ref2);
}
- @Test(expected = HDF5LibraryException.class)
- public void testH5Rcreate_InvalidObjectName() throws Throwable {
- H5.H5Rcreate(H5fid, "/GROUPS", HDF5Constants.H5R_OBJECT, -1);
+ @Test(expected = NullPointerException.class)
+ public void testH5Requal_Nullref2() throws Throwable {
+ byte[] ref1 = {0,0,0,0};
+ byte[] ref2 = null;
+ H5.H5Requal(ref1, ref2);
}
- @Test(expected = HDF5LibraryException.class)
- public void testH5Rcreate_Invalidspace_id() throws Throwable {
- H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, -1);
+ // Test parameters to H5Rcopy
+ @Test(expected = NullPointerException.class)
+ public void testH5Rcopy_Nullref1() throws Throwable {
+ byte[] ref1 = null;
+ byte[] ref2 = H5.H5Rcopy(ref1);
}
- @Test(expected = IllegalArgumentException.class)
- public void testH5Rcreate_Invalidreftype() throws Throwable {
- H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_BADTYPE, -1);
+ // Test parameters to H5Ropen_object
+ @Test(expected = NullPointerException.class)
+ public void testH5Ropen_object_Nullref() throws Throwable {
+ byte[] ref = null;
+ H5.H5Ropen_object(ref, -1, -1);
}
- @Test(expected = IllegalArgumentException.class)
- public void testH5Rgetregion_Invalidreftype() throws Throwable {
+ // Test parameters to H5Ropen_region
+ @Test(expected = NullPointerException.class)
+ public void testH5Ropen_region_Nullref() throws Throwable {
byte[] ref = null;
- ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, H5dsid);
- H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref);
+ H5.H5Ropen_region(ref, -1, -1);
}
- @Test(expected = IllegalArgumentException.class)
- public void testH5Rgetregion_Badreferencetype() throws Throwable {
+ // Test parameters to H5Ropen_attr
+ @Test(expected = NullPointerException.class)
+ public void testH5Ropen_attr_Nullref() throws Throwable {
byte[] ref = null;
- ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, H5dsid);
- H5.H5Rget_region(H5fid, HDF5Constants.H5R_OBJECT, ref);
+ H5.H5Ropen_attr(ref, -1, -1);
}
+ // Test parameters to H5Rget_obj_type3
@Test(expected = NullPointerException.class)
- public void testH5Rgetregion_Nullreference() throws Throwable {
+ public void testH5Rget_obj_type3_Nullref() throws Throwable {
byte[] ref = null;
- H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref);
+ H5.H5Rget_obj_type3(ref, -1);
}
+ // Test parameters to H5Rget_file_name
@Test(expected = NullPointerException.class)
- public void testH5Rdereference_Nullreference() throws Throwable {
+ public void testH5Rget_file_name_Nullref() throws Throwable {
byte[] ref = null;
- H5.H5Rdereference(H5did2, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref);
+ H5.H5Rget_file_name(ref);
}
- @Test(expected = IllegalArgumentException.class)
- public void testH5Rdereference_Invalidreference() throws Throwable {
- byte[] ref1 = null;
- byte[] ref2 = null;
- ref1 = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid);
- ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1);
- H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref1);
+ // Test parameters to H5Rget_obj_name
+ @Test(expected = NullPointerException.class)
+ public void testH5Rget_obj_name_Nullref() throws Throwable {
+ byte[] ref = null;
+ H5.H5Rget_obj_name(ref, -1);
+ }
+
+ // Test parameters to H5Rget_attr_name
+ @Test(expected = NullPointerException.class)
+ public void testH5Rget_attr_name_Nullref() throws Throwable {
+ byte[] ref = null;
+ H5.H5Rget_attr_name(ref);
}
}
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