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-rw-r--r--java/test/TestH5R.java469
1 files changed, 469 insertions, 0 deletions
diff --git a/java/test/TestH5R.java b/java/test/TestH5R.java
index 4e610bc..dd8634b 100644
--- a/java/test/TestH5R.java
+++ b/java/test/TestH5R.java
@@ -19,6 +19,9 @@ import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
import java.io.File;
+import java.util.ArrayList;
+import java.util.Arrays;
+import java.util.List;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
@@ -528,4 +531,470 @@ public class TestH5R {
byte[] ref = null;
H5.H5Rget_attr_name(ref);
}
+
+ @Test
+ public void testH5RVLattr_ref()
+ {
+ String attr_obj_name = "VLObjRefdata";
+ String attr_reg_name = "VLRegRefdata";
+ long attr_obj_id = HDF5Constants.H5I_INVALID_HID;
+ long attr_reg_id = HDF5Constants.H5I_INVALID_HID;
+ long atype_obj_id = HDF5Constants.H5I_INVALID_HID;
+ long atype_reg_id = HDF5Constants.H5I_INVALID_HID;
+ long aspace_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {4};
+ long lsize = 1;
+ byte[] ref1 = null;
+ byte[] ref2 = null;
+ byte[] ref3 = null;
+ byte[] ref4 = null;
+
+ try {
+ // Create reference on dataset
+ ref1 = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid);
+ assertNotNull(ref1);
+ ref2 = H5.H5Rcreate(H5gid, "dset2", HDF5Constants.H5R_DATASET_REGION, H5dsid);
+ assertNotNull(ref2);
+ ref3 = H5.H5Rcreate(H5gid, "/dset", HDF5Constants.H5R_OBJECT, -1);
+ assertNotNull(ref3);
+
+ // Create reference on group
+ ref4 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1);
+ assertNotNull(ref3);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5RVLattr_ref: " + err);
+ }
+
+ ArrayList[] vl_obj_data = new ArrayList[4];
+ ArrayList[] vl_reg_data = new ArrayList[4];
+ try {
+ // Write Object Reference data
+ vl_obj_data[0] = new ArrayList<byte[]>(Arrays.asList(ref3));
+ vl_obj_data[1] = new ArrayList<byte[]>(Arrays.asList(ref3, ref4));
+ vl_obj_data[2] = new ArrayList<byte[]>(Arrays.asList(ref3, ref3, ref3));
+ vl_obj_data[3] = new ArrayList<byte[]>(Arrays.asList(ref4, ref4, ref4, ref4));
+ Class dataClass = vl_obj_data.getClass();
+ assertTrue("testH5RVLattr_ref.getClass: " + dataClass, dataClass.isArray());
+
+ try {
+ atype_obj_id = H5.H5Tvlen_create(HDF5Constants.H5T_STD_REF_OBJ);
+ assertTrue("testH5RVLattr_ref.H5Tvlen_create: ", atype_obj_id >= 0);
+ }
+ catch (Exception err) {
+ if (atype_obj_id > 0)
+ try {
+ H5.H5Tclose(atype_obj_id);
+ }
+ catch (Exception ex) {
+ }
+ err.printStackTrace();
+ fail("H5.testH5RVLattr_ref: " + err);
+ }
+
+ try {
+ aspace_id = H5.H5Screate_simple(1, dims, null);
+ assertTrue(aspace_id > 0);
+ attr_obj_id = H5.H5Acreate(H5did, attr_obj_name, atype_obj_id, aspace_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ assertTrue("testH5RVLattr_ref: ", attr_obj_id >= 0);
+
+ H5.H5AwriteVL(attr_obj_id, atype_obj_id, vl_obj_data);
+ }
+ catch (Exception err) {
+ if (attr_obj_id > 0)
+ try {
+ H5.H5Aclose(attr_obj_id);
+ }
+ catch (Exception ex) {
+ }
+ if (atype_obj_id > 0)
+ try {
+ H5.H5Tclose(atype_obj_id);
+ }
+ catch (Exception ex) {
+ }
+ err.printStackTrace();
+ fail("H5.testH5RVLattr_ref: " + err);
+ }
+ finally {
+ if (aspace_id > 0)
+ try {
+ H5.H5Sclose(aspace_id);
+ }
+ catch (Exception ex) {
+ }
+ }
+
+ // Write Region Reference data
+ vl_reg_data[0] = new ArrayList<byte[]>(Arrays.asList(ref1));
+ vl_reg_data[1] = new ArrayList<byte[]>(Arrays.asList(ref1, ref2));
+ vl_reg_data[2] = new ArrayList<byte[]>(Arrays.asList(ref1, ref1, ref1));
+ vl_reg_data[3] = new ArrayList<byte[]>(Arrays.asList(ref2, ref2, ref2, ref2));
+ dataClass = vl_reg_data.getClass();
+ assertTrue("testH5RVLattr_ref.getClass: " + dataClass, dataClass.isArray());
+
+ try {
+ atype_reg_id = H5.H5Tvlen_create(HDF5Constants.H5T_STD_REF_DSETREG);
+ assertTrue("testH5RVLattr_ref.H5Tvlen_create: ", atype_reg_id >= 0);
+ }
+ catch (Exception err) {
+ if (atype_reg_id > 0)
+ try {
+ H5.H5Tclose(atype_reg_id);
+ }
+ catch (Exception ex) {
+ }
+ err.printStackTrace();
+ fail("H5.testH5RVLattr_ref: " + err);
+ }
+
+ try {
+ aspace_id = H5.H5Screate_simple(1, dims, null);
+ assertTrue(aspace_id > 0);
+ attr_reg_id = H5.H5Acreate(H5did, attr_reg_name, atype_reg_id, aspace_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ assertTrue("testH5RVLattr_ref: ", attr_reg_id >= 0);
+
+ H5.H5AwriteVL(attr_reg_id, atype_reg_id, vl_reg_data);
+ }
+ catch (Exception err) {
+ if (attr_reg_id > 0)
+ try {
+ H5.H5Aclose(attr_reg_id);
+ }
+ catch (Exception ex) {
+ }
+ if (atype_reg_id > 0)
+ try {
+ H5.H5Tclose(atype_reg_id);
+ }
+ catch (Exception ex) {
+ }
+ err.printStackTrace();
+ fail("H5.testH5RVLattr_ref: " + err);
+ }
+ finally {
+ if (aspace_id > 0)
+ try {
+ H5.H5Sclose(aspace_id);
+ }
+ catch (Exception ex) {
+ }
+ }
+
+ H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
+
+ for (int j = 0; j < dims.length; j++) {
+ lsize *= dims[j];
+ }
+
+ // Read Object Reference data
+ ArrayList[] vl_readbuf = new ArrayList[4];
+ for (int j = 0; j < lsize; j++)
+ vl_readbuf[j] = new ArrayList<byte[]>();
+
+ try {
+ H5.H5AreadVL(attr_obj_id, atype_obj_id, vl_readbuf);
+ }
+ catch (Exception ex) {
+ ex.printStackTrace();
+ }
+ assertTrue("testH5RVLattr_ref:" + ((byte[])vl_readbuf[0].get(0))[0],
+ ((byte[])vl_obj_data[0].get(0))[0] == ((byte[])vl_readbuf[0].get(0))[0]);
+ assertTrue("testH5RVLattr_ref:" + ((byte[])vl_readbuf[1].get(0))[0],
+ ((byte[])vl_obj_data[1].get(0))[0] == ((byte[])vl_readbuf[1].get(0))[0]);
+ assertTrue("testH5RVLattr_ref:" + ((byte[])vl_readbuf[2].get(0))[0],
+ ((byte[])vl_obj_data[2].get(0))[0] == ((byte[])vl_readbuf[2].get(0))[0]);
+ assertTrue("testH5RVLattr_ref:" + ((byte[])vl_readbuf[3].get(0))[0],
+ ((byte[])vl_obj_data[3].get(0))[0] == ((byte[])vl_readbuf[3].get(0))[0]);
+
+ // Read Region Reference data
+ vl_readbuf = new ArrayList[4];
+ for (int j = 0; j < lsize; j++)
+ vl_readbuf[j] = new ArrayList<byte[]>();
+
+ try {
+ H5.H5AreadVL(attr_reg_id, atype_reg_id, vl_readbuf);
+ }
+ catch (Exception ex) {
+ ex.printStackTrace();
+ }
+ assertTrue("testH5RVLattr_ref:" + ((byte[])vl_readbuf[0].get(0))[0],
+ ((byte[])vl_reg_data[0].get(0))[0] == ((byte[])vl_readbuf[0].get(0))[0]);
+ assertTrue("testH5RVLattr_ref:" + ((byte[])vl_readbuf[1].get(0))[0],
+ ((byte[])vl_reg_data[1].get(0))[0] == ((byte[])vl_readbuf[1].get(0))[0]);
+ assertTrue("testH5RVLattr_ref:" + ((byte[])vl_readbuf[2].get(0))[0],
+ ((byte[])vl_reg_data[2].get(0))[0] == ((byte[])vl_readbuf[2].get(0))[0]);
+ assertTrue("testH5RVLattr_ref:" + ((byte[])vl_readbuf[3].get(0))[0],
+ ((byte[])vl_reg_data[3].get(0))[0] == ((byte[])vl_readbuf[3].get(0))[0]);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("H5.testH5RVLattr_ref: " + err);
+ }
+ finally {
+ if (attr_reg_id > 0)
+ try {
+ H5.H5Aclose(attr_reg_id);
+ }
+ catch (Exception ex) {
+ }
+ if (attr_obj_id > 0)
+ try {
+ H5.H5Aclose(attr_obj_id);
+ }
+ catch (Exception ex) {
+ }
+ if (atype_reg_id > 0)
+ try {
+ H5.H5Tclose(atype_reg_id);
+ }
+ catch (Exception ex) {
+ }
+ if (atype_obj_id > 0)
+ try {
+ H5.H5Tclose(atype_obj_id);
+ }
+ catch (Exception ex) {
+ }
+ }
+ }
+
+ @Test
+ public void testH5RVLdset_ref()
+ {
+ String dset_obj_name = "VLObjRefdata";
+ String dset_reg_name = "VLRegRefdata";
+ long dset_obj_id = HDF5Constants.H5I_INVALID_HID;
+ long dset_reg_id = HDF5Constants.H5I_INVALID_HID;
+ long dtype_obj_id = HDF5Constants.H5I_INVALID_HID;
+ long dtype_reg_id = HDF5Constants.H5I_INVALID_HID;
+ long dspace_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {4};
+ long lsize = 1;
+ byte[] ref1 = null;
+ byte[] ref2 = null;
+ byte[] ref3 = null;
+ byte[] ref4 = null;
+
+ try {
+ // Create reference on dataset
+ ref1 = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid);
+ assertNotNull(ref1);
+ ref2 = H5.H5Rcreate(H5gid, "dset2", HDF5Constants.H5R_DATASET_REGION, H5dsid);
+ assertNotNull(ref2);
+ ref3 = H5.H5Rcreate(H5gid, "/dset", HDF5Constants.H5R_OBJECT, -1);
+ assertNotNull(ref3);
+
+ // Create reference on group
+ ref4 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1);
+ assertNotNull(ref3);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5RVLattr_ref: " + err);
+ }
+
+ ArrayList[] vl_obj_data = new ArrayList[4];
+ ArrayList[] vl_reg_data = new ArrayList[4];
+ try {
+ // Write Object Reference data
+ vl_obj_data[0] = new ArrayList<byte[]>(Arrays.asList(ref3));
+ vl_obj_data[1] = new ArrayList<byte[]>(Arrays.asList(ref3, ref4));
+ vl_obj_data[2] = new ArrayList<byte[]>(Arrays.asList(ref3, ref3, ref3));
+ vl_obj_data[3] = new ArrayList<byte[]>(Arrays.asList(ref4, ref4, ref4, ref4));
+ Class dataClass = vl_obj_data.getClass();
+ assertTrue("testH5RVLdset_ref.getClass: " + dataClass, dataClass.isArray());
+
+ try {
+ dtype_obj_id = H5.H5Tvlen_create(HDF5Constants.H5T_STD_REF_OBJ);
+ assertTrue("testH5RVLdset_ref.H5Tvlen_create: ", dtype_obj_id >= 0);
+ }
+ catch (Exception err) {
+ if (dtype_obj_id > 0)
+ try {
+ H5.H5Tclose(dtype_obj_id);
+ }
+ catch (Exception ex) {
+ }
+ err.printStackTrace();
+ fail("H5.testH5RVLdset_ref: " + err);
+ }
+
+ try {
+ dspace_id = H5.H5Screate_simple(1, dims, null);
+ assertTrue(dspace_id > 0);
+ dset_obj_id =
+ H5.H5Dcreate(H5fid, dset_obj_name, dtype_obj_id, dspace_id, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ assertTrue("testH5RVLdset_ref: ", dset_obj_id >= 0);
+
+ H5.H5DwriteVL(dset_obj_id, dtype_obj_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, vl_obj_data);
+ }
+ catch (Exception err) {
+ if (dset_obj_id > 0)
+ try {
+ H5.H5Dclose(dset_obj_id);
+ }
+ catch (Exception ex) {
+ }
+ if (dtype_obj_id > 0)
+ try {
+ H5.H5Tclose(dtype_obj_id);
+ }
+ catch (Exception ex) {
+ }
+ err.printStackTrace();
+ fail("H5.testH5RVLdset_ref: " + err);
+ }
+ finally {
+ if (dspace_id > 0)
+ try {
+ H5.H5Sclose(dspace_id);
+ }
+ catch (Exception ex) {
+ }
+ }
+
+ // Write Region Reference data
+ vl_reg_data[0] = new ArrayList<byte[]>(Arrays.asList(ref1));
+ vl_reg_data[1] = new ArrayList<byte[]>(Arrays.asList(ref1, ref2));
+ vl_reg_data[2] = new ArrayList<byte[]>(Arrays.asList(ref1, ref1, ref1));
+ vl_reg_data[3] = new ArrayList<byte[]>(Arrays.asList(ref2, ref2, ref2, ref2));
+ dataClass = vl_reg_data.getClass();
+ assertTrue("testH5RVLdset_ref.getClass: " + dataClass, dataClass.isArray());
+
+ try {
+ dtype_reg_id = H5.H5Tvlen_create(HDF5Constants.H5T_STD_REF_DSETREG);
+ assertTrue("testH5RVLdset_ref.H5Tvlen_create: ", dtype_reg_id >= 0);
+ }
+ catch (Exception err) {
+ if (dtype_reg_id > 0)
+ try {
+ H5.H5Tclose(dtype_reg_id);
+ }
+ catch (Exception ex) {
+ }
+ err.printStackTrace();
+ fail("H5.testH5RVLdset_ref: " + err);
+ }
+
+ try {
+ dspace_id = H5.H5Screate_simple(1, dims, null);
+ assertTrue(dspace_id > 0);
+ dset_reg_id =
+ H5.H5Dcreate(H5fid, dset_reg_name, dtype_reg_id, dspace_id, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ assertTrue("testH5RVLdset_ref: ", dset_reg_id >= 0);
+
+ H5.H5DwriteVL(dset_reg_id, dtype_reg_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, vl_reg_data);
+ }
+ catch (Exception err) {
+ if (dset_reg_id > 0)
+ try {
+ H5.H5Dclose(dset_reg_id);
+ }
+ catch (Exception ex) {
+ }
+ if (dtype_reg_id > 0)
+ try {
+ H5.H5Tclose(dtype_reg_id);
+ }
+ catch (Exception ex) {
+ }
+ err.printStackTrace();
+ fail("H5.testH5RVLdset_ref: " + err);
+ }
+ finally {
+ if (dspace_id > 0)
+ try {
+ H5.H5Sclose(dspace_id);
+ }
+ catch (Exception ex) {
+ }
+ }
+
+ H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
+
+ for (int j = 0; j < dims.length; j++) {
+ lsize *= dims[j];
+ }
+
+ // Read Object Reference data
+ ArrayList[] vl_readbuf = new ArrayList[4];
+ for (int j = 0; j < lsize; j++)
+ vl_readbuf[j] = new ArrayList<byte[]>();
+
+ try {
+ H5.H5DreadVL(dset_obj_id, dtype_obj_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, vl_readbuf);
+ }
+ catch (Exception ex) {
+ ex.printStackTrace();
+ }
+ assertTrue("testH5RVLdset_ref:" + ((byte[])vl_readbuf[0].get(0))[0],
+ ((byte[])vl_obj_data[0].get(0))[0] == ((byte[])vl_readbuf[0].get(0))[0]);
+ assertTrue("testH5RVLdset_ref:" + ((byte[])vl_readbuf[1].get(0))[0],
+ ((byte[])vl_obj_data[1].get(0))[0] == ((byte[])vl_readbuf[1].get(0))[0]);
+ assertTrue("testH5RVLdset_ref:" + ((byte[])vl_readbuf[2].get(0))[0],
+ ((byte[])vl_obj_data[2].get(0))[0] == ((byte[])vl_readbuf[2].get(0))[0]);
+ assertTrue("testH5RVLdset_ref:" + ((byte[])vl_readbuf[3].get(0))[0],
+ ((byte[])vl_obj_data[3].get(0))[0] == ((byte[])vl_readbuf[3].get(0))[0]);
+
+ // Read Region Reference data
+ vl_readbuf = new ArrayList[4];
+ for (int j = 0; j < lsize; j++)
+ vl_readbuf[j] = new ArrayList<byte[]>();
+
+ try {
+ H5.H5DreadVL(dset_reg_id, dtype_reg_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, vl_readbuf);
+ }
+ catch (Exception ex) {
+ ex.printStackTrace();
+ }
+ assertTrue("testH5RVLdset_ref:" + ((byte[])vl_readbuf[0].get(0))[0],
+ ((byte[])vl_reg_data[0].get(0))[0] == ((byte[])vl_readbuf[0].get(0))[0]);
+ assertTrue("testH5RVLdset_ref:" + ((byte[])vl_readbuf[1].get(0))[0],
+ ((byte[])vl_reg_data[1].get(0))[0] == ((byte[])vl_readbuf[1].get(0))[0]);
+ assertTrue("testH5RVLdset_ref:" + ((byte[])vl_readbuf[2].get(0))[0],
+ ((byte[])vl_reg_data[2].get(0))[0] == ((byte[])vl_readbuf[2].get(0))[0]);
+ assertTrue("testH5RVLdset_ref:" + ((byte[])vl_readbuf[3].get(0))[0],
+ ((byte[])vl_reg_data[3].get(0))[0] == ((byte[])vl_readbuf[3].get(0))[0]);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("H5.testH5RVLdset_ref: " + err);
+ }
+ finally {
+ if (dset_reg_id > 0)
+ try {
+ H5.H5Dclose(dset_reg_id);
+ }
+ catch (Exception ex) {
+ }
+ if (dset_obj_id > 0)
+ try {
+ H5.H5Dclose(dset_obj_id);
+ }
+ catch (Exception ex) {
+ }
+ if (dtype_reg_id > 0)
+ try {
+ H5.H5Tclose(dtype_reg_id);
+ }
+ catch (Exception ex) {
+ }
+ if (dtype_obj_id > 0)
+ try {
+ H5.H5Tclose(dtype_obj_id);
+ }
+ catch (Exception ex) {
+ }
+ }
+ }
}