diff options
Diffstat (limited to 'java/test/TestH5R.java')
-rw-r--r-- | java/test/TestH5R.java | 414 |
1 files changed, 231 insertions, 183 deletions
diff --git a/java/test/TestH5R.java b/java/test/TestH5R.java index 031b8e4..4e610bc 100644 --- a/java/test/TestH5R.java +++ b/java/test/TestH5R.java @@ -23,8 +23,8 @@ import java.io.File; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; import hdf.hdf5lib.exceptions.HDF5Exception; -import hdf.hdf5lib.exceptions.HDF5LibraryException; import hdf.hdf5lib.exceptions.HDF5FunctionArgumentException; +import hdf.hdf5lib.exceptions.HDF5LibraryException; import org.junit.After; import org.junit.Before; @@ -34,38 +34,46 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5R { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); private static final String H5_FILE = "testH5R.h5"; - private static final int DIM_X = 4; - private static final int DIM_Y = 6; - long H5fid = HDF5Constants.H5I_INVALID_HID; - long H5dsid = HDF5Constants.H5I_INVALID_HID; - long H5did = HDF5Constants.H5I_INVALID_HID; - long H5gid = HDF5Constants.H5I_INVALID_HID; - long H5did2 = HDF5Constants.H5I_INVALID_HID; - long[] H5dims = { DIM_X, DIM_Y }; - int[][] dset_data = new int[DIM_X][DIM_Y]; - int FILLVAL = 99; - - private final void _deleteFile(String filename) { + private static final int DIM_X = 4; + private static final int DIM_Y = 6; + long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5dsid = HDF5Constants.H5I_INVALID_HID; + long H5did = HDF5Constants.H5I_INVALID_HID; + long H5gid = HDF5Constants.H5I_INVALID_HID; + long H5did2 = HDF5Constants.H5I_INVALID_HID; + long[] H5dims = {DIM_X, DIM_Y}; + int[][] dset_data = new int[DIM_X][DIM_Y]; + int FILLVAL = 99; + + private final void _deleteFile(String filename) + { File file = null; try { file = new File(filename); } - catch (Throwable err) {} + catch (Throwable err) { + } if (file.exists()) { - try {file.delete();} catch (SecurityException e) {e.printStackTrace();} + try { + file.delete(); + } + catch (SecurityException e) { + e.printStackTrace(); + } } assertFalse("TestH5R._deleteFile file still exists ", file.exists()); } - private final long _createDataset(long fid, long dsid, String name, long dapl) { + private final long _createDataset(long fid, long dsid, String name, long dapl) + { long did = HDF5Constants.H5I_INVALID_HID; try { - did = H5.H5Dcreate(fid, name, - HDF5Constants.H5T_STD_I32BE, dsid, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl); + did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, dapl); } catch (Throwable err) { err.printStackTrace(); @@ -76,34 +84,35 @@ public class TestH5R { return did; } - private final long _createGroup(long fid, String name) { + private final long _createGroup(long fid, String name) + { long gid = HDF5Constants.H5I_INVALID_HID; try { - gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Gcreate: " + err); } - assertTrue("TestH5R._createGroup: ",gid > 0); + assertTrue("TestH5R._createGroup: ", gid > 0); return gid; } @Before - public void createH5file() - throws NullPointerException, HDF5Exception { - assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); + public void createH5file() throws NullPointerException, HDF5Exception + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); try { - H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); H5dsid = H5.H5Screate_simple(2, H5dims, null); - H5gid = _createGroup(H5fid, "Group1"); + H5gid = _createGroup(H5fid, "Group1"); H5did2 = _createDataset(H5gid, H5dsid, "dset2", HDF5Constants.H5P_DEFAULT); - H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); + H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); // Initialize the dataset. for (int indx = 0; indx < DIM_X; indx++) @@ -112,38 +121,57 @@ public class TestH5R { try { if (H5did >= 0) - H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, dset_data[0]); + H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL, + HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data[0]); } catch (Exception e) { e.printStackTrace(); } - } catch (Throwable err) { err.printStackTrace(); fail("TestH5R.createH5file: " + err); } - assertTrue("TestH5R.createH5file: H5.H5Fcreate: ",H5fid > 0); - assertTrue("TestH5R.createH5file: H5.H5Screate_simple: ",H5dsid > 0); - assertTrue("TestH5R.createH5file: _createDataset: ",H5did > 0); + assertTrue("TestH5R.createH5file: H5.H5Fcreate: ", H5fid > 0); + assertTrue("TestH5R.createH5file: H5.H5Screate_simple: ", H5dsid > 0); + assertTrue("TestH5R.createH5file: _createDataset: ", H5did > 0); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); } @After - public void deleteH5file() throws HDF5LibraryException { + public void deleteH5file() throws HDF5LibraryException + { if (H5dsid > 0) - try {H5.H5Sclose(H5dsid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dsid); + } + catch (Exception ex) { + } if (H5did > 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } if (H5fid > 0) - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } if (H5gid > 0) - try {H5.H5Gclose(H5gid);} catch (Exception ex) {} + try { + H5.H5Gclose(H5gid); + } + catch (Exception ex) { + } if (H5did2 > 0) - try {H5.H5Dclose(H5did2);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did2); + } + catch (Exception ex) { + } _deleteFile(H5_FILE); System.out.println(); @@ -152,11 +180,12 @@ public class TestH5R { // Test v1.12 APIs params @Test - public void testH5Rget_object() { - int ref_type = HDF5Constants.H5R_OBJECT2; - long ret_val = -1; - byte[] ref = null; - String name = ""; + public void testH5Rget_object() + { + int ref_type = HDF5Constants.H5R_OBJECT2; + long ret_val = -1; + byte[] ref = null; + String name = ""; String objName = "/dset"; try { @@ -197,9 +226,10 @@ public class TestH5R { } @Test - public void testH5Rget_obj_type3() { - int obj_type = -1; - byte[] ref = null; + public void testH5Rget_obj_type3() + { + int obj_type = -1; + byte[] ref = null; String objName = "/dset"; try { @@ -222,13 +252,14 @@ public class TestH5R { } @Test - public void testH5Rcreate_regionref_object() { - byte[] ref = null; + public void testH5Rcreate_regionref_object() + { + byte[] ref = null; String objName = "/dset"; - long start[] = {2,2}; // Starting location of hyperslab - long stride[] = {1,1}; // Stride of hyperslab - long count[] = {1,1}; // Element count of hyperslab - long block[] = {3,3}; // Block size of hyperslab + long start[] = {2, 2}; // Starting location of hyperslab + long stride[] = {1, 1}; // Stride of hyperslab + long count[] = {1, 1}; // Element count of hyperslab + long block[] = {3, 3}; // Block size of hyperslab // Select 3x3 hyperslab for reference try { @@ -249,235 +280,252 @@ public class TestH5R { H5.H5Rdestroy(ref); } -// These tests need to be updated with new APIs -// @Test// -// public void testH5Rget_group() { -// long loc_id = H5fid; -// int ref_type = HDF5Constants.H5R_OBJECT2; -// long ret_val = -1; -// byte[] ref = null; -// String name = ""; -// String objName = "/dset"; -// -// try { -// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("testH5Rget_object: H5Rcreate_object " + err); -// } -// try { -// dataset_id= H5.H5Rdereference(H5fid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_DATASET_REGION, ref1); -// -// //Create reference on group -// ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1); -// group_id= H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref2); -// assertNotNull(ref1); -// assertNotNull(ref2); -// assertTrue(dataset_id >= 0); -// assertTrue(group_id >= 0); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("TestH5Rdereference " + err); -// } -// finally { -// try {H5.H5Dclose(dataset_id);} catch (Exception ex) {} -// try {H5.H5Gclose(group_id);} catch (Exception ex) {} -// } -// } - -// @Test// -// public void testH5Rget_region_dataset() { -// long loc_id = H5fid; -// int ref_type = HDF5Constants.H5R_OBJECT2; -// long ret_val = -1; -// byte[] ref = null; -// String name = ""; -// String objName = "/dset"; -// -// try { -// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("testH5Rget_object: H5Rcreate_object " + err); -// } -// try { -// dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref); -// assertNotNull(ref); -// assertTrue(dsid >= 0); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("TestH5Rget_region: " + err); -// } -// finally { -// try {H5.H5Sclose(dsid);} catch (Exception ex) {} -// } -// } - -// @Test// -// public void testH5Rget_attr() { -// long loc_id = H5fid; -// int ref_type = HDF5Constants.H5R_OBJECT2; -// long ret_val = -1; -// byte[] ref = null; -// String name = ""; -// String objName = "/dset"; -// -// try { -// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("testH5Rget_object: H5Rcreate_object " + err); -// } -// try { -// dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref); -// assertNotNull(ref); -// assertTrue(dsid >= 0); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("TestH5Rget_region: " + err); -// } -// finally { -// try {H5.H5Sclose(dsid);} catch (Exception ex) {} -// } -// } + // These tests need to be updated with new APIs + // @Test// + // public void testH5Rget_group() { + // long loc_id = H5fid; + // int ref_type = HDF5Constants.H5R_OBJECT2; + // long ret_val = -1; + // byte[] ref = null; + // String name = ""; + // String objName = "/dset"; + // + // try { + // ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("testH5Rget_object: H5Rcreate_object " + err); + // } + // try { + // dataset_id= H5.H5Rdereference(H5fid, HDF5Constants.H5P_DEFAULT, + // HDF5Constants.H5R_DATASET_REGION, ref1); + // + // //Create reference on group + // ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1); + // group_id= H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, + // ref2); assertNotNull(ref1); assertNotNull(ref2); assertTrue(dataset_id >= 0); + // assertTrue(group_id >= 0); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("TestH5Rdereference " + err); + // } + // finally { + // try {H5.H5Dclose(dataset_id);} catch (Exception ex) {} + // try {H5.H5Gclose(group_id);} catch (Exception ex) {} + // } + // } + + // @Test// + // public void testH5Rget_region_dataset() { + // long loc_id = H5fid; + // int ref_type = HDF5Constants.H5R_OBJECT2; + // long ret_val = -1; + // byte[] ref = null; + // String name = ""; + // String objName = "/dset"; + // + // try { + // ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("testH5Rget_object: H5Rcreate_object " + err); + // } + // try { + // dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref); + // assertNotNull(ref); + // assertTrue(dsid >= 0); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("TestH5Rget_region: " + err); + // } + // finally { + // try {H5.H5Sclose(dsid);} catch (Exception ex) {} + // } + // } + + // @Test// + // public void testH5Rget_attr() { + // long loc_id = H5fid; + // int ref_type = HDF5Constants.H5R_OBJECT2; + // long ret_val = -1; + // byte[] ref = null; + // String name = ""; + // String objName = "/dset"; + // + // try { + // ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("testH5Rget_object: H5Rcreate_object " + err); + // } + // try { + // dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref); + // assertNotNull(ref); + // assertTrue(dsid >= 0); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("TestH5Rget_region: " + err); + // } + // finally { + // try {H5.H5Sclose(dsid);} catch (Exception ex) {} + // } + // } // Test parameters to H5Rcreate_object @Test(expected = NullPointerException.class) - public void testH5Rcreate_object_Nullname() throws Throwable { + public void testH5Rcreate_object_Nullname() throws Throwable + { String name = null; H5.H5Rcreate_object(H5fid, name, HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5FunctionArgumentException.class) - public void testH5Rget_name_Invalidloc() throws Throwable { - String name= ""; + public void testH5Rget_name_Invalidloc() throws Throwable + { + String name = ""; H5.H5Rcreate_object(-1, name, HDF5Constants.H5P_DEFAULT); } // Test parameters to H5Rcreate_region @Test(expected = NullPointerException.class) - public void testH5Rcreate_region_Nullname() throws Throwable { + public void testH5Rcreate_region_Nullname() throws Throwable + { String name = null; H5.H5Rcreate_region(H5fid, name, -1, HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5FunctionArgumentException.class) - public void testH5Rcreate_region_Invalidloc() throws Throwable { - String name= ""; + public void testH5Rcreate_region_Invalidloc() throws Throwable + { + String name = ""; H5.H5Rcreate_region(-1, name, -1, HDF5Constants.H5P_DEFAULT); } // Test parameters to H5Rcreate_attr @Test(expected = NullPointerException.class) - public void testH5Rcreate_attr_Nullname() throws Throwable { - String name = null; + public void testH5Rcreate_attr_Nullname() throws Throwable + { + String name = null; String attrname = ""; H5.H5Rcreate_attr(H5fid, name, attrname, HDF5Constants.H5P_DEFAULT); } @Test(expected = NullPointerException.class) - public void testH5Rcreate_attr_Nullattrname() throws Throwable { - String name = ""; + public void testH5Rcreate_attr_Nullattrname() throws Throwable + { + String name = ""; String attrname = null; H5.H5Rcreate_attr(H5fid, name, attrname, HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5FunctionArgumentException.class) - public void testH5Rcreate_attr_Invalidloc() throws Throwable { - String name= ""; - String attrname= ""; + public void testH5Rcreate_attr_Invalidloc() throws Throwable + { + String name = ""; + String attrname = ""; H5.H5Rcreate_attr(-1, name, attrname, HDF5Constants.H5P_DEFAULT); } // Test parameters to H5Rdestroy @Test(expected = NullPointerException.class) - public void testH5Rdestroy_Nullref() throws Throwable { + public void testH5Rdestroy_Nullref() throws Throwable + { byte[] ref = null; H5.H5Rdestroy(ref); } // Test parameters to H5Rget_type @Test(expected = NullPointerException.class) - public void testH5Rget_type_Nullref() throws Throwable { + public void testH5Rget_type_Nullref() throws Throwable + { byte[] ref = null; H5.H5Rget_type(ref); } // Test parameters to H5Requal @Test(expected = NullPointerException.class) - public void testH5Requal_Nullref1() throws Throwable { + public void testH5Requal_Nullref1() throws Throwable + { byte[] ref1 = null; - byte[] ref2 = {0,0,0,0}; + byte[] ref2 = {0, 0, 0, 0}; H5.H5Requal(ref1, ref2); } @Test(expected = NullPointerException.class) - public void testH5Requal_Nullref2() throws Throwable { - byte[] ref1 = {0,0,0,0}; + public void testH5Requal_Nullref2() throws Throwable + { + byte[] ref1 = {0, 0, 0, 0}; byte[] ref2 = null; H5.H5Requal(ref1, ref2); } // Test parameters to H5Rcopy @Test(expected = NullPointerException.class) - public void testH5Rcopy_Nullref1() throws Throwable { + public void testH5Rcopy_Nullref1() throws Throwable + { byte[] ref1 = null; byte[] ref2 = H5.H5Rcopy(ref1); } // Test parameters to H5Ropen_object @Test(expected = NullPointerException.class) - public void testH5Ropen_object_Nullref() throws Throwable { + public void testH5Ropen_object_Nullref() throws Throwable + { byte[] ref = null; H5.H5Ropen_object(ref, -1, -1); } // Test parameters to H5Ropen_region @Test(expected = NullPointerException.class) - public void testH5Ropen_region_Nullref() throws Throwable { + public void testH5Ropen_region_Nullref() throws Throwable + { byte[] ref = null; H5.H5Ropen_region(ref, -1, -1); } // Test parameters to H5Ropen_attr @Test(expected = NullPointerException.class) - public void testH5Ropen_attr_Nullref() throws Throwable { + public void testH5Ropen_attr_Nullref() throws Throwable + { byte[] ref = null; H5.H5Ropen_attr(ref, -1, -1); } // Test parameters to H5Rget_obj_type3 @Test(expected = NullPointerException.class) - public void testH5Rget_obj_type3_Nullref() throws Throwable { + public void testH5Rget_obj_type3_Nullref() throws Throwable + { byte[] ref = null; H5.H5Rget_obj_type3(ref, -1); } // Test parameters to H5Rget_file_name @Test(expected = NullPointerException.class) - public void testH5Rget_file_name_Nullref() throws Throwable { + public void testH5Rget_file_name_Nullref() throws Throwable + { byte[] ref = null; H5.H5Rget_file_name(ref); } // Test parameters to H5Rget_obj_name @Test(expected = NullPointerException.class) - public void testH5Rget_obj_name_Nullref() throws Throwable { + public void testH5Rget_obj_name_Nullref() throws Throwable + { byte[] ref = null; H5.H5Rget_obj_name(ref, -1); } // Test parameters to H5Rget_attr_name @Test(expected = NullPointerException.class) - public void testH5Rget_attr_name_Nullref() throws Throwable { + public void testH5Rget_attr_name_Nullref() throws Throwable + { byte[] ref = null; H5.H5Rget_attr_name(ref); } - } |