diff options
Diffstat (limited to 'java/test/TestH5Rref.java')
| -rw-r--r-- | java/test/TestH5Rref.java | 797 |
1 files changed, 425 insertions, 372 deletions
diff --git a/java/test/TestH5Rref.java b/java/test/TestH5Rref.java index 5733aae..520de74 100644 --- a/java/test/TestH5Rref.java +++ b/java/test/TestH5Rref.java @@ -23,8 +23,8 @@ import java.io.File; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; import hdf.hdf5lib.exceptions.HDF5Exception; -import hdf.hdf5lib.exceptions.HDF5LibraryException; import hdf.hdf5lib.exceptions.HDF5FunctionArgumentException; +import hdf.hdf5lib.exceptions.HDF5LibraryException; import org.junit.After; import org.junit.Before; @@ -34,14 +34,16 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5Rref { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); private static final String H5_DREG_FILE = "trefer_reg.h5"; private static final String H5_AREG_FILE = "trefer_attr.h5"; - long H5fid = HDF5Constants.H5I_INVALID_HID; - long H5dsid = HDF5Constants.H5I_INVALID_HID; - long H5did = HDF5Constants.H5I_INVALID_HID; + long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5dsid = HDF5Constants.H5I_INVALID_HID; + long H5did = HDF5Constants.H5I_INVALID_HID; - private boolean byteArrayCheck(final byte[] array) { + private boolean byteArrayCheck(final byte[] array) + { for (byte b : array) { if (b != 0) { return false; @@ -50,67 +52,81 @@ public class TestH5Rref { return true; } - public void openH5file(String filename, String dsetname) { - try { - H5fid = H5.H5Fopen(filename, - HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT); - } - catch (Throwable err) { - err.printStackTrace(); - fail("TestH5R._openH5file: " + err); - } - assertTrue("TestH5R._openH5file: H5.H5Fopen: ", H5fid >= 0); - try { - H5did = H5.H5Dopen(H5fid, dsetname, HDF5Constants.H5P_DEFAULT); - } - catch (Throwable err) { - err.printStackTrace(); - fail("TestH5R._openH5file: " + err); - } - assertTrue("TestH5R._openH5file: H5.H5Dopen: ", H5did >= 0); - try { - H5dsid = H5.H5Dget_space(H5did); - } - catch (Throwable err) { - err.printStackTrace(); - fail("TestH5R._openH5file: " + err); - } - assertTrue("TestH5R._openH5file: H5.H5Screate_simple: ",H5dsid > 0); + public void openH5file(String filename, String dsetname) + { + try { + H5fid = H5.H5Fopen(filename, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT); + } + catch (Throwable err) { + err.printStackTrace(); + fail("TestH5R._openH5file: " + err); + } + assertTrue("TestH5R._openH5file: H5.H5Fopen: ", H5fid >= 0); + try { + H5did = H5.H5Dopen(H5fid, dsetname, HDF5Constants.H5P_DEFAULT); + } + catch (Throwable err) { + err.printStackTrace(); + fail("TestH5R._openH5file: " + err); + } + assertTrue("TestH5R._openH5file: H5.H5Dopen: ", H5did >= 0); + try { + H5dsid = H5.H5Dget_space(H5did); + } + catch (Throwable err) { + err.printStackTrace(); + fail("TestH5R._openH5file: " + err); + } + assertTrue("TestH5R._openH5file: H5.H5Screate_simple: ", H5dsid > 0); } @After - public void closeH5file() throws HDF5LibraryException { + public void closeH5file() throws HDF5LibraryException + { if (H5did >= 0) - try {H5.H5Dclose(H5did);} catch (Exception ex) {} + try { + H5.H5Dclose(H5did); + } + catch (Exception ex) { + } if (H5dsid > 0) - try {H5.H5Sclose(H5dsid);} catch (Exception ex) {} + try { + H5.H5Sclose(H5dsid); + } + catch (Exception ex) { + } if (H5fid > 0) - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} - H5fid = HDF5Constants.H5I_INVALID_HID; + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } + H5fid = HDF5Constants.H5I_INVALID_HID; H5dsid = HDF5Constants.H5I_INVALID_HID; - H5did = HDF5Constants.H5I_INVALID_HID; + H5did = HDF5Constants.H5I_INVALID_HID; System.out.println(); } @Before - public void verifyCount() - throws NullPointerException, HDF5Exception { - assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0); + public void verifyCount() throws NullPointerException, HDF5Exception + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); } // Test v1.12 APIs params @Test - public void testH5Rget_object() { - int ref_type = HDF5Constants.H5R_OBJECT1; - long f_type = HDF5Constants.H5I_INVALID_HID; - int obj_type = -1; - int ndims = 1; - long ret_val = -1; + public void testH5Rget_object() + { + int ref_type = HDF5Constants.H5R_OBJECT1; + long f_type = HDF5Constants.H5I_INVALID_HID; + int obj_type = -1; + int ndims = 1; + long ret_val = -1; byte[][] refbuf = null; - String name = ""; - String objName = "/DS_NA"; + String name = ""; + String objName = "/DS_NA"; try { openH5file(H5_DREG_FILE, objName); @@ -120,18 +136,22 @@ public class TestH5Rref { fail("testH5Rget_object: openH5file: " + err); } try { - f_type = H5.H5Dget_type(H5did); + f_type = H5.H5Dget_type(H5did); int result = H5.H5Tget_class(f_type); assertTrue("testH5Rget_object: H5Tget_class", result > 0); String class_name = H5.H5Tget_class_name(result); - assertTrue("testH5Rget_object: H5Tget_class", class_name.compareTo("H5T_REFERENCE")==0); + assertTrue("testH5Rget_object: H5Tget_class", class_name.compareTo("H5T_REFERENCE") == 0); } catch (Throwable err) { err.printStackTrace(); fail("testH5Rget_object: " + err); } finally { - try {H5.H5Tclose(f_type);} catch (Exception ex) {} + try { + H5.H5Tclose(f_type); + } + catch (Exception ex) { + } } try { ndims = (int)H5.H5Sget_simple_extent_npoints(H5dsid); @@ -143,9 +163,8 @@ public class TestH5Rref { refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE]; // Read the reference from the dataset. try { - H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, refbuf); + H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, refbuf); } catch (Exception err) { err.printStackTrace(); @@ -155,7 +174,7 @@ public class TestH5Rref { for (int i = 0; i < ndims; i++) { try { ret_val = H5.H5Rget_type(refbuf[i]); - assertTrue("testH5Rget_object: H5Rget_type["+i+"]="+ret_val, ret_val == ref_type); + assertTrue("testH5Rget_object: H5Rget_type[" + i + "]=" + ret_val, ret_val == ref_type); if (!byteArrayCheck(refbuf[i])) { try { obj_type = H5.H5Rget_obj_type3(refbuf[i], HDF5Constants.H5P_DEFAULT); @@ -178,14 +197,15 @@ public class TestH5Rref { } @Test - public void testH5Rget_obj_type3() { - long f_type = HDF5Constants.H5I_INVALID_HID; - int ref_type = HDF5Constants.H5R_DATASET_REGION2; - int obj_type = -1; - int ndims = 1; - long ret_val = -1; + public void testH5Rget_obj_type3() + { + long f_type = HDF5Constants.H5I_INVALID_HID; + int ref_type = HDF5Constants.H5R_DATASET_REGION2; + int obj_type = -1; + int ndims = 1; + long ret_val = -1; byte[][] refbuf = null; - String objName = "/Dataset1"; + String objName = "/Dataset1"; try { openH5file(H5_DREG_FILE, objName); @@ -195,18 +215,23 @@ public class TestH5Rref { fail("testH5Rget_obj_type3: openH5file: " + err); } try { - f_type = H5.H5Dget_type(H5did); + f_type = H5.H5Dget_type(H5did); int result = H5.H5Tget_class(f_type); assertTrue("testH5Rget_obj_type3: H5Tget_class", result > 0); String class_name = H5.H5Tget_class_name(result); - assertTrue("testH5Rget_obj_type3: H5Tget_class="+class_name, class_name.compareTo("H5T_REFERENCE")==0); + assertTrue("testH5Rget_obj_type3: H5Tget_class=" + class_name, + class_name.compareTo("H5T_REFERENCE") == 0); } catch (Throwable err) { err.printStackTrace(); fail("testH5Rget_obj_type3: " + err); } finally { - try {H5.H5Tclose(f_type);} catch (Exception ex) {} + try { + H5.H5Tclose(f_type); + } + catch (Exception ex) { + } } try { ndims = (int)H5.H5Sget_simple_extent_npoints(H5dsid); @@ -218,9 +243,8 @@ public class TestH5Rref { refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE]; // Read the reference from the dataset. try { - H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, refbuf); + H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, refbuf); } catch (Exception err) { err.printStackTrace(); @@ -230,7 +254,7 @@ public class TestH5Rref { for (int i = 0; i < ndims; i++) { try { ret_val = H5.H5Rget_type(refbuf[i]); - assertTrue("testH5Rget_obj_type3: H5Rget_type["+i+"]="+ret_val, ret_val == ref_type); + assertTrue("testH5Rget_obj_type3: H5Rget_type[" + i + "]=" + ret_val, ret_val == ref_type); if (!byteArrayCheck(refbuf[i])) { try { obj_type = H5.H5Rget_obj_type3(refbuf[i], HDF5Constants.H5P_DEFAULT); @@ -252,312 +276,341 @@ public class TestH5Rref { } } - @Test - public void testH5Rget_region_dataset() { - long f_type = HDF5Constants.H5I_INVALID_HID; - long loc_id = HDF5Constants.H5I_INVALID_HID; - long loc_sid = HDF5Constants.H5I_INVALID_HID; - int ref_type = HDF5Constants.H5R_DATASET_REGION2; - int ndims = 1; - long ret_val = -1; - byte[][] refbuf = null; - String name = ""; - String objName = "/Dataset1"; - - try { - openH5file(H5_DREG_FILE, objName); - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Rget_region_dataset: openH5file: " + err); - } - try { - f_type = H5.H5Dget_type(H5did); - int result = H5.H5Tget_class(f_type); - assertTrue("testH5Rget_region_dataset: H5Tget_class", result > 0); - String class_name = H5.H5Tget_class_name(result); - assertTrue("testH5Rget_region_dataset: H5Tget_class="+class_name, class_name.compareTo("H5T_REFERENCE")==0); - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Rget_region_dataset: " + err); - } - finally { - try {H5.H5Tclose(f_type);} catch (Exception ex) {} - } - try { - ndims = (int)H5.H5Sget_simple_extent_npoints(H5dsid); - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Rget_region_dataset: H5Sget_simple_extent_ndims: " + err); - } - refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE]; - // Read the reference from the dataset. - try { - H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, refbuf); - } - catch (Exception err) { - err.printStackTrace(); - fail("testH5Rget_obj_type3: H5Dread: " + err); - } - for (int i = 0; i < ndims; i++) { - try { - try { - ret_val = H5.H5Rget_type(refbuf[i]); - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Rget_region_dataset: H5Rget_type["+i+"]: " + err); - } - assertTrue("testH5Rget_region_dataset: H5Rget_type["+i+"]="+ret_val, ret_val == ref_type); - try { - loc_id = H5.H5Ropen_object(refbuf[i], HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); - assertTrue(loc_id >= 0); - try { - loc_sid = H5.H5Ropen_region(refbuf[i], HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); - assertTrue(loc_sid >= 0); - int region_type = -1; - try { - int reg_ndims = H5.H5Sget_simple_extent_ndims(loc_sid); - region_type = H5.H5Sget_select_type(loc_sid); - if (i == 1) - assertTrue(region_type == HDF5Constants.H5S_SEL_POINTS); - else - assertTrue(region_type == HDF5Constants.H5S_SEL_HYPERSLABS); - if (region_type == HDF5Constants.H5S_SEL_POINTS) { - long reg_npoints = H5.H5Sget_select_elem_npoints(loc_sid); - // Coordinates for get point selection - long getcoord[] = new long[reg_ndims * (int)reg_npoints]; - // Known coordinates for point selection - long coord[][] = {{6,9},{2,2},{8,4},{1,6},{2,8},{3,2}, - {0,4},{9,0},{7,1},{3,3}}; - try { - H5.H5Sget_select_elem_pointlist(loc_sid, 0, reg_npoints, getcoord); - assertTrue("H5.H5Sget_select_elem_pointlist", coord[0][0] == getcoord[0]); - assertTrue("H5.H5Sget_select_elem_pointlist", coord[0][1] == getcoord[1]); - assertTrue("H5.H5Sget_select_elem_pointlist", coord[1][0] == getcoord[2]); - assertTrue("H5.H5Sget_select_elem_pointlist", coord[1][1] == getcoord[3]); - assertTrue("H5.H5Sget_select_elem_pointlist", coord[2][0] == getcoord[4]); - assertTrue("H5.H5Sget_select_elem_pointlist", coord[2][1] == getcoord[5]); - } - catch (Throwable err3) { - err3.printStackTrace(); - fail("H5.H5Sget_select_elem_pointlist: " + err3); - } - } - else if (region_type == HDF5Constants.H5S_SEL_HYPERSLABS) { - long reg_nblocks = H5.H5Sget_select_hyper_nblocks(loc_sid); - assertTrue("H5Sget_select_hyper_nblocks", reg_nblocks == 1); - // Coordinates for get block selection - long getblocks[] = new long[reg_ndims * (int)reg_nblocks * 2]; - long start[] = {2,2}; - long block[] = {8,8}; - try { - H5.H5Sget_select_hyper_blocklist(loc_sid, 0, reg_nblocks, getblocks); - assertTrue("H5.H5Sget_select_hyper_blocklist", start[0] == getblocks[0]); - assertTrue("H5.H5Sget_select_hyper_blocklist", start[1] == getblocks[1]); - assertTrue("H5.H5Sget_select_hyper_blocklist", (block[0]-1) == getblocks[2]); - assertTrue("H5.H5Sget_select_hyper_blocklist", (block[1]-1) == getblocks[3]); - } - catch (Throwable err3) { - err3.printStackTrace(); - fail("H5.H5Sget_select_hyper_blocklist: " + err3); - } - } - } - catch (Throwable err2) { - err2.printStackTrace(); - assertTrue("testH5Rget_region_dataset: H5Sget_select_type: " + err2, i > 1); - } - } - catch (Throwable err1) { - err1.printStackTrace(); - fail("testH5Rget_region_dataset: " + err1); - } - finally { - try {H5.H5Sclose(loc_sid);} catch (Exception ex) {} - } - } - catch (Throwable err0) { - err0.printStackTrace(); - fail("testH5Rget_region_dataset: " + err0); - } - finally { - try {H5.H5Dclose(loc_id);} catch (Exception ex) {} - } - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Rget_region_dataset: H5Rget_type: " + err); - } - finally { - H5.H5Rdestroy(refbuf[i]); - } - } //for (int i = 0; i < ndims; i++) - } - - @Test - public void testH5Rget_region_attribute() { - long f_type = HDF5Constants.H5I_INVALID_HID; - long loc_id = HDF5Constants.H5I_INVALID_HID; - long loc_sid = HDF5Constants.H5I_INVALID_HID; - int ref_type = HDF5Constants.H5R_ATTR; - int obj_type = -1; - int ndims = 1; - long ret_val = -1; - byte[][] refbuf = null; - String objName = "/Dataset3"; + @Test + public void testH5Rget_region_dataset() + { + long f_type = HDF5Constants.H5I_INVALID_HID; + long loc_id = HDF5Constants.H5I_INVALID_HID; + long loc_sid = HDF5Constants.H5I_INVALID_HID; + int ref_type = HDF5Constants.H5R_DATASET_REGION2; + int ndims = 1; + long ret_val = -1; + byte[][] refbuf = null; + String name = ""; + String objName = "/Dataset1"; - try { - openH5file(H5_AREG_FILE, objName); - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Rget_region_attribute: openH5file: " + err); - } - try { - f_type = H5.H5Dget_type(H5did); - int result = H5.H5Tget_class(f_type); - assertTrue("testH5Rget_region_attribute: H5Tget_class", result > 0); - String class_name = H5.H5Tget_class_name(result); - assertTrue("testH5Rget_region_attribute: H5Tget_class="+class_name, class_name.compareTo("H5T_REFERENCE")==0); - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Rget_region_attribute: " + err); - } - finally { - try {H5.H5Tclose(f_type);} catch (Exception ex) {} - } - try { - ndims = (int)H5.H5Sget_simple_extent_npoints(H5dsid); - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Rget_region_attribute: H5Sget_simple_extent_ndims: " + err); - } - refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE]; - // Read the reference from the dataset. - try { - H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF, - HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, - HDF5Constants.H5P_DEFAULT, refbuf); - } - catch (Exception err) { - err.printStackTrace(); - fail("testH5Rget_region_attribute: H5Dread: " + err); - } + try { + openH5file(H5_DREG_FILE, objName); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Rget_region_dataset: openH5file: " + err); + } + try { + f_type = H5.H5Dget_type(H5did); + int result = H5.H5Tget_class(f_type); + assertTrue("testH5Rget_region_dataset: H5Tget_class", result > 0); + String class_name = H5.H5Tget_class_name(result); + assertTrue("testH5Rget_region_dataset: H5Tget_class=" + class_name, + class_name.compareTo("H5T_REFERENCE") == 0); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Rget_region_dataset: " + err); + } + finally { + try { + H5.H5Tclose(f_type); + } + catch (Exception ex) { + } + } + try { + ndims = (int)H5.H5Sget_simple_extent_npoints(H5dsid); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Rget_region_dataset: H5Sget_simple_extent_ndims: " + err); + } + refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE]; + // Read the reference from the dataset. + try { + H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, refbuf); + } + catch (Exception err) { + err.printStackTrace(); + fail("testH5Rget_obj_type3: H5Dread: " + err); + } + for (int i = 0; i < ndims; i++) { + try { + try { + ret_val = H5.H5Rget_type(refbuf[i]); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Rget_region_dataset: H5Rget_type[" + i + "]: " + err); + } + assertTrue("testH5Rget_region_dataset: H5Rget_type[" + i + "]=" + ret_val, + ret_val == ref_type); + try { + loc_id = + H5.H5Ropen_object(refbuf[i], HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + assertTrue(loc_id >= 0); + try { + loc_sid = H5.H5Ropen_region(refbuf[i], HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); + assertTrue(loc_sid >= 0); + int region_type = -1; + try { + int reg_ndims = H5.H5Sget_simple_extent_ndims(loc_sid); + region_type = H5.H5Sget_select_type(loc_sid); + if (i == 1) + assertTrue(region_type == HDF5Constants.H5S_SEL_POINTS); + else + assertTrue(region_type == HDF5Constants.H5S_SEL_HYPERSLABS); + if (region_type == HDF5Constants.H5S_SEL_POINTS) { + long reg_npoints = H5.H5Sget_select_elem_npoints(loc_sid); + // Coordinates for get point selection + long getcoord[] = new long[reg_ndims * (int)reg_npoints]; + // Known coordinates for point selection + long coord[][] = {{6, 9}, {2, 2}, {8, 4}, {1, 6}, {2, 8}, + {3, 2}, {0, 4}, {9, 0}, {7, 1}, {3, 3}}; + try { + H5.H5Sget_select_elem_pointlist(loc_sid, 0, reg_npoints, getcoord); + assertTrue("H5.H5Sget_select_elem_pointlist", coord[0][0] == getcoord[0]); + assertTrue("H5.H5Sget_select_elem_pointlist", coord[0][1] == getcoord[1]); + assertTrue("H5.H5Sget_select_elem_pointlist", coord[1][0] == getcoord[2]); + assertTrue("H5.H5Sget_select_elem_pointlist", coord[1][1] == getcoord[3]); + assertTrue("H5.H5Sget_select_elem_pointlist", coord[2][0] == getcoord[4]); + assertTrue("H5.H5Sget_select_elem_pointlist", coord[2][1] == getcoord[5]); + } + catch (Throwable err3) { + err3.printStackTrace(); + fail("H5.H5Sget_select_elem_pointlist: " + err3); + } + } + else if (region_type == HDF5Constants.H5S_SEL_HYPERSLABS) { + long reg_nblocks = H5.H5Sget_select_hyper_nblocks(loc_sid); + assertTrue("H5Sget_select_hyper_nblocks", reg_nblocks == 1); + // Coordinates for get block selection + long getblocks[] = new long[reg_ndims * (int)reg_nblocks * 2]; + long start[] = {2, 2}; + long block[] = {8, 8}; + try { + H5.H5Sget_select_hyper_blocklist(loc_sid, 0, reg_nblocks, getblocks); + assertTrue("H5.H5Sget_select_hyper_blocklist", start[0] == getblocks[0]); + assertTrue("H5.H5Sget_select_hyper_blocklist", start[1] == getblocks[1]); + assertTrue("H5.H5Sget_select_hyper_blocklist", + (block[0] - 1) == getblocks[2]); + assertTrue("H5.H5Sget_select_hyper_blocklist", + (block[1] - 1) == getblocks[3]); + } + catch (Throwable err3) { + err3.printStackTrace(); + fail("H5.H5Sget_select_hyper_blocklist: " + err3); + } + } + } + catch (Throwable err2) { + err2.printStackTrace(); + assertTrue("testH5Rget_region_dataset: H5Sget_select_type: " + err2, i > 1); + } + } + catch (Throwable err1) { + err1.printStackTrace(); + fail("testH5Rget_region_dataset: " + err1); + } + finally { + try { + H5.H5Sclose(loc_sid); + } + catch (Exception ex) { + } + } + } + catch (Throwable err0) { + err0.printStackTrace(); + fail("testH5Rget_region_dataset: " + err0); + } + finally { + try { + H5.H5Dclose(loc_id); + } + catch (Exception ex) { + } + } + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Rget_region_dataset: H5Rget_type: " + err); + } + finally { + H5.H5Rdestroy(refbuf[i]); + } + } // for (int i = 0; i < ndims; i++) + } - for (int i = 0; i < ndims; i++) { - try { - ret_val = H5.H5Rget_type(refbuf[i]); - assertTrue("testH5Rget_region_attribute: H5Rget_type["+i+"]="+ret_val, ret_val == ref_type); - try { - loc_id = H5.H5Ropen_attr(refbuf[i], HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); - assertTrue(loc_id >= 0); - if (!byteArrayCheck(refbuf[i])) { - try { - loc_sid = H5.H5Aget_space(loc_id); - assertTrue(loc_sid >= 0); - } - catch (Throwable err1) { - err1.printStackTrace(); - fail("testH5Rget_region_attribute: " + err1); - } - finally { - try {H5.H5Sclose(loc_sid);} catch (Exception ex) {} - } - } - } - catch (Throwable err0) { - err0.printStackTrace(); - // second attribute is null - assertTrue("testH5Rget_region_attribute: " + err0, i == 1); - } - finally { - try {H5.H5Aclose(loc_id);} catch (Exception ex) {} - } - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Rget_region_attribute: H5Rget_type: " + err); - } - finally { - H5.H5Rdestroy(refbuf[i]); - } - } - } + @Test + public void testH5Rget_region_attribute() + { + long f_type = HDF5Constants.H5I_INVALID_HID; + long loc_id = HDF5Constants.H5I_INVALID_HID; + long loc_sid = HDF5Constants.H5I_INVALID_HID; + int ref_type = HDF5Constants.H5R_ATTR; + int obj_type = -1; + int ndims = 1; + long ret_val = -1; + byte[][] refbuf = null; + String objName = "/Dataset3"; + try { + openH5file(H5_AREG_FILE, objName); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Rget_region_attribute: openH5file: " + err); + } + try { + f_type = H5.H5Dget_type(H5did); + int result = H5.H5Tget_class(f_type); + assertTrue("testH5Rget_region_attribute: H5Tget_class", result > 0); + String class_name = H5.H5Tget_class_name(result); + assertTrue("testH5Rget_region_attribute: H5Tget_class=" + class_name, + class_name.compareTo("H5T_REFERENCE") == 0); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Rget_region_attribute: " + err); + } + finally { + try { + H5.H5Tclose(f_type); + } + catch (Exception ex) { + } + } + try { + ndims = (int)H5.H5Sget_simple_extent_npoints(H5dsid); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Rget_region_attribute: H5Sget_simple_extent_ndims: " + err); + } + refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE]; + // Read the reference from the dataset. + try { + H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, refbuf); + } + catch (Exception err) { + err.printStackTrace(); + fail("testH5Rget_region_attribute: H5Dread: " + err); + } -// These tests need to be updated with new APIs -// @Test// -// public void testH5Rget_group() { -// long loc_id = H5fid; -// int ref_type = HDF5Constants.H5R_OBJECT2; -// long ret_val = -1; -// byte[] ref = null; -// String name = ""; -// String objName = "/dset"; -// -// try { -// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("testH5Rget_object: H5Rcreate_object " + err); -// } -// try { -// dataset_id= H5.H5Rdereference(H5fid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_DATASET_REGION, ref1); -// -// //Create reference on group -// ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1); -// group_id= H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref2); -// assertNotNull(ref1); -// assertNotNull(ref2); -// assertTrue(dataset_id >= 0); -// assertTrue(group_id >= 0); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("TestH5Rdereference " + err); -// } -// finally { -// try {H5.H5Dclose(dataset_id);} catch (Exception ex) {} -// try {H5.H5Gclose(group_id);} catch (Exception ex) {} -// } -// } + for (int i = 0; i < ndims; i++) { + try { + ret_val = H5.H5Rget_type(refbuf[i]); + assertTrue("testH5Rget_region_attribute: H5Rget_type[" + i + "]=" + ret_val, + ret_val == ref_type); + try { + loc_id = H5.H5Ropen_attr(refbuf[i], HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + assertTrue(loc_id >= 0); + if (!byteArrayCheck(refbuf[i])) { + try { + loc_sid = H5.H5Aget_space(loc_id); + assertTrue(loc_sid >= 0); + } + catch (Throwable err1) { + err1.printStackTrace(); + fail("testH5Rget_region_attribute: " + err1); + } + finally { + try { + H5.H5Sclose(loc_sid); + } + catch (Exception ex) { + } + } + } + } + catch (Throwable err0) { + err0.printStackTrace(); + // second attribute is null + assertTrue("testH5Rget_region_attribute: " + err0, i == 1); + } + finally { + try { + H5.H5Aclose(loc_id); + } + catch (Exception ex) { + } + } + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Rget_region_attribute: H5Rget_type: " + err); + } + finally { + H5.H5Rdestroy(refbuf[i]); + } + } + } -// @Test// -// public void testH5Rget_attr() { -// long loc_id = H5fid; -// int ref_type = HDF5Constants.H5R_OBJECT2; -// long ret_val = -1; -// byte[] ref = null; -// String name = ""; -// String objName = "/dset"; -// -// try { -// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("testH5Rget_object: H5Rcreate_object " + err); -// } -// try { -// dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref); -// assertNotNull(ref); -// assertTrue(dsid >= 0); -// } -// catch (Throwable err) { -// err.printStackTrace(); -// fail("TestH5Rget_region: " + err); -// } -// finally { -// try {H5.H5Sclose(dsid);} catch (Exception ex) {} -// } -// } + // These tests need to be updated with new APIs + // @Test// + // public void testH5Rget_group() { + // long loc_id = H5fid; + // int ref_type = HDF5Constants.H5R_OBJECT2; + // long ret_val = -1; + // byte[] ref = null; + // String name = ""; + // String objName = "/dset"; + // + // try { + // ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("testH5Rget_object: H5Rcreate_object " + err); + // } + // try { + // dataset_id= H5.H5Rdereference(H5fid, HDF5Constants.H5P_DEFAULT, + // HDF5Constants.H5R_DATASET_REGION, ref1); + // + // //Create reference on group + // ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1); + // group_id= H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, + // ref2); assertNotNull(ref1); assertNotNull(ref2); assertTrue(dataset_id >= 0); + // assertTrue(group_id >= 0); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("TestH5Rdereference " + err); + // } + // finally { + // try {H5.H5Dclose(dataset_id);} catch (Exception ex) {} + // try {H5.H5Gclose(group_id);} catch (Exception ex) {} + // } + // } + // @Test// + // public void testH5Rget_attr() { + // long loc_id = H5fid; + // int ref_type = HDF5Constants.H5R_OBJECT2; + // long ret_val = -1; + // byte[] ref = null; + // String name = ""; + // String objName = "/dset"; + // + // try { + // ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("testH5Rget_object: H5Rcreate_object " + err); + // } + // try { + // dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref); + // assertNotNull(ref); + // assertTrue(dsid >= 0); + // } + // catch (Throwable err) { + // err.printStackTrace(); + // fail("TestH5Rget_region: " + err); + // } + // finally { + // try {H5.H5Sclose(dsid);} catch (Exception ex) {} + // } + // } } |