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-rw-r--r--java/test/TestH5Rref.java797
1 files changed, 425 insertions, 372 deletions
diff --git a/java/test/TestH5Rref.java b/java/test/TestH5Rref.java
index 5733aae..520de74 100644
--- a/java/test/TestH5Rref.java
+++ b/java/test/TestH5Rref.java
@@ -23,8 +23,8 @@ import java.io.File;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
import hdf.hdf5lib.exceptions.HDF5Exception;
-import hdf.hdf5lib.exceptions.HDF5LibraryException;
import hdf.hdf5lib.exceptions.HDF5FunctionArgumentException;
+import hdf.hdf5lib.exceptions.HDF5LibraryException;
import org.junit.After;
import org.junit.Before;
@@ -34,14 +34,16 @@ import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Rref {
- @Rule public TestName testname = new TestName();
+ @Rule
+ public TestName testname = new TestName();
private static final String H5_DREG_FILE = "trefer_reg.h5";
private static final String H5_AREG_FILE = "trefer_attr.h5";
- long H5fid = HDF5Constants.H5I_INVALID_HID;
- long H5dsid = HDF5Constants.H5I_INVALID_HID;
- long H5did = HDF5Constants.H5I_INVALID_HID;
+ long H5fid = HDF5Constants.H5I_INVALID_HID;
+ long H5dsid = HDF5Constants.H5I_INVALID_HID;
+ long H5did = HDF5Constants.H5I_INVALID_HID;
- private boolean byteArrayCheck(final byte[] array) {
+ private boolean byteArrayCheck(final byte[] array)
+ {
for (byte b : array) {
if (b != 0) {
return false;
@@ -50,67 +52,81 @@ public class TestH5Rref {
return true;
}
- public void openH5file(String filename, String dsetname) {
- try {
- H5fid = H5.H5Fopen(filename,
- HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("TestH5R._openH5file: " + err);
- }
- assertTrue("TestH5R._openH5file: H5.H5Fopen: ", H5fid >= 0);
- try {
- H5did = H5.H5Dopen(H5fid, dsetname, HDF5Constants.H5P_DEFAULT);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("TestH5R._openH5file: " + err);
- }
- assertTrue("TestH5R._openH5file: H5.H5Dopen: ", H5did >= 0);
- try {
- H5dsid = H5.H5Dget_space(H5did);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("TestH5R._openH5file: " + err);
- }
- assertTrue("TestH5R._openH5file: H5.H5Screate_simple: ",H5dsid > 0);
+ public void openH5file(String filename, String dsetname)
+ {
+ try {
+ H5fid = H5.H5Fopen(filename, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("TestH5R._openH5file: " + err);
+ }
+ assertTrue("TestH5R._openH5file: H5.H5Fopen: ", H5fid >= 0);
+ try {
+ H5did = H5.H5Dopen(H5fid, dsetname, HDF5Constants.H5P_DEFAULT);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("TestH5R._openH5file: " + err);
+ }
+ assertTrue("TestH5R._openH5file: H5.H5Dopen: ", H5did >= 0);
+ try {
+ H5dsid = H5.H5Dget_space(H5did);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("TestH5R._openH5file: " + err);
+ }
+ assertTrue("TestH5R._openH5file: H5.H5Screate_simple: ", H5dsid > 0);
}
@After
- public void closeH5file() throws HDF5LibraryException {
+ public void closeH5file() throws HDF5LibraryException
+ {
if (H5did >= 0)
- try {H5.H5Dclose(H5did);} catch (Exception ex) {}
+ try {
+ H5.H5Dclose(H5did);
+ }
+ catch (Exception ex) {
+ }
if (H5dsid > 0)
- try {H5.H5Sclose(H5dsid);} catch (Exception ex) {}
+ try {
+ H5.H5Sclose(H5dsid);
+ }
+ catch (Exception ex) {
+ }
if (H5fid > 0)
- try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
- H5fid = HDF5Constants.H5I_INVALID_HID;
+ try {
+ H5.H5Fclose(H5fid);
+ }
+ catch (Exception ex) {
+ }
+ H5fid = HDF5Constants.H5I_INVALID_HID;
H5dsid = HDF5Constants.H5I_INVALID_HID;
- H5did = HDF5Constants.H5I_INVALID_HID;
+ H5did = HDF5Constants.H5I_INVALID_HID;
System.out.println();
}
@Before
- public void verifyCount()
- throws NullPointerException, HDF5Exception {
- assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0);
+ public void verifyCount() throws NullPointerException, HDF5Exception
+ {
+ assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
System.out.print(testname.getMethodName());
}
// Test v1.12 APIs params
@Test
- public void testH5Rget_object() {
- int ref_type = HDF5Constants.H5R_OBJECT1;
- long f_type = HDF5Constants.H5I_INVALID_HID;
- int obj_type = -1;
- int ndims = 1;
- long ret_val = -1;
+ public void testH5Rget_object()
+ {
+ int ref_type = HDF5Constants.H5R_OBJECT1;
+ long f_type = HDF5Constants.H5I_INVALID_HID;
+ int obj_type = -1;
+ int ndims = 1;
+ long ret_val = -1;
byte[][] refbuf = null;
- String name = "";
- String objName = "/DS_NA";
+ String name = "";
+ String objName = "/DS_NA";
try {
openH5file(H5_DREG_FILE, objName);
@@ -120,18 +136,22 @@ public class TestH5Rref {
fail("testH5Rget_object: openH5file: " + err);
}
try {
- f_type = H5.H5Dget_type(H5did);
+ f_type = H5.H5Dget_type(H5did);
int result = H5.H5Tget_class(f_type);
assertTrue("testH5Rget_object: H5Tget_class", result > 0);
String class_name = H5.H5Tget_class_name(result);
- assertTrue("testH5Rget_object: H5Tget_class", class_name.compareTo("H5T_REFERENCE")==0);
+ assertTrue("testH5Rget_object: H5Tget_class", class_name.compareTo("H5T_REFERENCE") == 0);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_object: " + err);
}
finally {
- try {H5.H5Tclose(f_type);} catch (Exception ex) {}
+ try {
+ H5.H5Tclose(f_type);
+ }
+ catch (Exception ex) {
+ }
}
try {
ndims = (int)H5.H5Sget_simple_extent_npoints(H5dsid);
@@ -143,9 +163,8 @@ public class TestH5Rref {
refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE];
// Read the reference from the dataset.
try {
- H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF,
- HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, refbuf);
+ H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, refbuf);
}
catch (Exception err) {
err.printStackTrace();
@@ -155,7 +174,7 @@ public class TestH5Rref {
for (int i = 0; i < ndims; i++) {
try {
ret_val = H5.H5Rget_type(refbuf[i]);
- assertTrue("testH5Rget_object: H5Rget_type["+i+"]="+ret_val, ret_val == ref_type);
+ assertTrue("testH5Rget_object: H5Rget_type[" + i + "]=" + ret_val, ret_val == ref_type);
if (!byteArrayCheck(refbuf[i])) {
try {
obj_type = H5.H5Rget_obj_type3(refbuf[i], HDF5Constants.H5P_DEFAULT);
@@ -178,14 +197,15 @@ public class TestH5Rref {
}
@Test
- public void testH5Rget_obj_type3() {
- long f_type = HDF5Constants.H5I_INVALID_HID;
- int ref_type = HDF5Constants.H5R_DATASET_REGION2;
- int obj_type = -1;
- int ndims = 1;
- long ret_val = -1;
+ public void testH5Rget_obj_type3()
+ {
+ long f_type = HDF5Constants.H5I_INVALID_HID;
+ int ref_type = HDF5Constants.H5R_DATASET_REGION2;
+ int obj_type = -1;
+ int ndims = 1;
+ long ret_val = -1;
byte[][] refbuf = null;
- String objName = "/Dataset1";
+ String objName = "/Dataset1";
try {
openH5file(H5_DREG_FILE, objName);
@@ -195,18 +215,23 @@ public class TestH5Rref {
fail("testH5Rget_obj_type3: openH5file: " + err);
}
try {
- f_type = H5.H5Dget_type(H5did);
+ f_type = H5.H5Dget_type(H5did);
int result = H5.H5Tget_class(f_type);
assertTrue("testH5Rget_obj_type3: H5Tget_class", result > 0);
String class_name = H5.H5Tget_class_name(result);
- assertTrue("testH5Rget_obj_type3: H5Tget_class="+class_name, class_name.compareTo("H5T_REFERENCE")==0);
+ assertTrue("testH5Rget_obj_type3: H5Tget_class=" + class_name,
+ class_name.compareTo("H5T_REFERENCE") == 0);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_obj_type3: " + err);
}
finally {
- try {H5.H5Tclose(f_type);} catch (Exception ex) {}
+ try {
+ H5.H5Tclose(f_type);
+ }
+ catch (Exception ex) {
+ }
}
try {
ndims = (int)H5.H5Sget_simple_extent_npoints(H5dsid);
@@ -218,9 +243,8 @@ public class TestH5Rref {
refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE];
// Read the reference from the dataset.
try {
- H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF,
- HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, refbuf);
+ H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, refbuf);
}
catch (Exception err) {
err.printStackTrace();
@@ -230,7 +254,7 @@ public class TestH5Rref {
for (int i = 0; i < ndims; i++) {
try {
ret_val = H5.H5Rget_type(refbuf[i]);
- assertTrue("testH5Rget_obj_type3: H5Rget_type["+i+"]="+ret_val, ret_val == ref_type);
+ assertTrue("testH5Rget_obj_type3: H5Rget_type[" + i + "]=" + ret_val, ret_val == ref_type);
if (!byteArrayCheck(refbuf[i])) {
try {
obj_type = H5.H5Rget_obj_type3(refbuf[i], HDF5Constants.H5P_DEFAULT);
@@ -252,312 +276,341 @@ public class TestH5Rref {
}
}
- @Test
- public void testH5Rget_region_dataset() {
- long f_type = HDF5Constants.H5I_INVALID_HID;
- long loc_id = HDF5Constants.H5I_INVALID_HID;
- long loc_sid = HDF5Constants.H5I_INVALID_HID;
- int ref_type = HDF5Constants.H5R_DATASET_REGION2;
- int ndims = 1;
- long ret_val = -1;
- byte[][] refbuf = null;
- String name = "";
- String objName = "/Dataset1";
-
- try {
- openH5file(H5_DREG_FILE, objName);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("testH5Rget_region_dataset: openH5file: " + err);
- }
- try {
- f_type = H5.H5Dget_type(H5did);
- int result = H5.H5Tget_class(f_type);
- assertTrue("testH5Rget_region_dataset: H5Tget_class", result > 0);
- String class_name = H5.H5Tget_class_name(result);
- assertTrue("testH5Rget_region_dataset: H5Tget_class="+class_name, class_name.compareTo("H5T_REFERENCE")==0);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("testH5Rget_region_dataset: " + err);
- }
- finally {
- try {H5.H5Tclose(f_type);} catch (Exception ex) {}
- }
- try {
- ndims = (int)H5.H5Sget_simple_extent_npoints(H5dsid);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("testH5Rget_region_dataset: H5Sget_simple_extent_ndims: " + err);
- }
- refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE];
- // Read the reference from the dataset.
- try {
- H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF,
- HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, refbuf);
- }
- catch (Exception err) {
- err.printStackTrace();
- fail("testH5Rget_obj_type3: H5Dread: " + err);
- }
- for (int i = 0; i < ndims; i++) {
- try {
- try {
- ret_val = H5.H5Rget_type(refbuf[i]);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("testH5Rget_region_dataset: H5Rget_type["+i+"]: " + err);
- }
- assertTrue("testH5Rget_region_dataset: H5Rget_type["+i+"]="+ret_val, ret_val == ref_type);
- try {
- loc_id = H5.H5Ropen_object(refbuf[i], HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
- assertTrue(loc_id >= 0);
- try {
- loc_sid = H5.H5Ropen_region(refbuf[i], HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
- assertTrue(loc_sid >= 0);
- int region_type = -1;
- try {
- int reg_ndims = H5.H5Sget_simple_extent_ndims(loc_sid);
- region_type = H5.H5Sget_select_type(loc_sid);
- if (i == 1)
- assertTrue(region_type == HDF5Constants.H5S_SEL_POINTS);
- else
- assertTrue(region_type == HDF5Constants.H5S_SEL_HYPERSLABS);
- if (region_type == HDF5Constants.H5S_SEL_POINTS) {
- long reg_npoints = H5.H5Sget_select_elem_npoints(loc_sid);
- // Coordinates for get point selection
- long getcoord[] = new long[reg_ndims * (int)reg_npoints];
- // Known coordinates for point selection
- long coord[][] = {{6,9},{2,2},{8,4},{1,6},{2,8},{3,2},
- {0,4},{9,0},{7,1},{3,3}};
- try {
- H5.H5Sget_select_elem_pointlist(loc_sid, 0, reg_npoints, getcoord);
- assertTrue("H5.H5Sget_select_elem_pointlist", coord[0][0] == getcoord[0]);
- assertTrue("H5.H5Sget_select_elem_pointlist", coord[0][1] == getcoord[1]);
- assertTrue("H5.H5Sget_select_elem_pointlist", coord[1][0] == getcoord[2]);
- assertTrue("H5.H5Sget_select_elem_pointlist", coord[1][1] == getcoord[3]);
- assertTrue("H5.H5Sget_select_elem_pointlist", coord[2][0] == getcoord[4]);
- assertTrue("H5.H5Sget_select_elem_pointlist", coord[2][1] == getcoord[5]);
- }
- catch (Throwable err3) {
- err3.printStackTrace();
- fail("H5.H5Sget_select_elem_pointlist: " + err3);
- }
- }
- else if (region_type == HDF5Constants.H5S_SEL_HYPERSLABS) {
- long reg_nblocks = H5.H5Sget_select_hyper_nblocks(loc_sid);
- assertTrue("H5Sget_select_hyper_nblocks", reg_nblocks == 1);
- // Coordinates for get block selection
- long getblocks[] = new long[reg_ndims * (int)reg_nblocks * 2];
- long start[] = {2,2};
- long block[] = {8,8};
- try {
- H5.H5Sget_select_hyper_blocklist(loc_sid, 0, reg_nblocks, getblocks);
- assertTrue("H5.H5Sget_select_hyper_blocklist", start[0] == getblocks[0]);
- assertTrue("H5.H5Sget_select_hyper_blocklist", start[1] == getblocks[1]);
- assertTrue("H5.H5Sget_select_hyper_blocklist", (block[0]-1) == getblocks[2]);
- assertTrue("H5.H5Sget_select_hyper_blocklist", (block[1]-1) == getblocks[3]);
- }
- catch (Throwable err3) {
- err3.printStackTrace();
- fail("H5.H5Sget_select_hyper_blocklist: " + err3);
- }
- }
- }
- catch (Throwable err2) {
- err2.printStackTrace();
- assertTrue("testH5Rget_region_dataset: H5Sget_select_type: " + err2, i > 1);
- }
- }
- catch (Throwable err1) {
- err1.printStackTrace();
- fail("testH5Rget_region_dataset: " + err1);
- }
- finally {
- try {H5.H5Sclose(loc_sid);} catch (Exception ex) {}
- }
- }
- catch (Throwable err0) {
- err0.printStackTrace();
- fail("testH5Rget_region_dataset: " + err0);
- }
- finally {
- try {H5.H5Dclose(loc_id);} catch (Exception ex) {}
- }
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("testH5Rget_region_dataset: H5Rget_type: " + err);
- }
- finally {
- H5.H5Rdestroy(refbuf[i]);
- }
- } //for (int i = 0; i < ndims; i++)
- }
-
- @Test
- public void testH5Rget_region_attribute() {
- long f_type = HDF5Constants.H5I_INVALID_HID;
- long loc_id = HDF5Constants.H5I_INVALID_HID;
- long loc_sid = HDF5Constants.H5I_INVALID_HID;
- int ref_type = HDF5Constants.H5R_ATTR;
- int obj_type = -1;
- int ndims = 1;
- long ret_val = -1;
- byte[][] refbuf = null;
- String objName = "/Dataset3";
+ @Test
+ public void testH5Rget_region_dataset()
+ {
+ long f_type = HDF5Constants.H5I_INVALID_HID;
+ long loc_id = HDF5Constants.H5I_INVALID_HID;
+ long loc_sid = HDF5Constants.H5I_INVALID_HID;
+ int ref_type = HDF5Constants.H5R_DATASET_REGION2;
+ int ndims = 1;
+ long ret_val = -1;
+ byte[][] refbuf = null;
+ String name = "";
+ String objName = "/Dataset1";
- try {
- openH5file(H5_AREG_FILE, objName);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("testH5Rget_region_attribute: openH5file: " + err);
- }
- try {
- f_type = H5.H5Dget_type(H5did);
- int result = H5.H5Tget_class(f_type);
- assertTrue("testH5Rget_region_attribute: H5Tget_class", result > 0);
- String class_name = H5.H5Tget_class_name(result);
- assertTrue("testH5Rget_region_attribute: H5Tget_class="+class_name, class_name.compareTo("H5T_REFERENCE")==0);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("testH5Rget_region_attribute: " + err);
- }
- finally {
- try {H5.H5Tclose(f_type);} catch (Exception ex) {}
- }
- try {
- ndims = (int)H5.H5Sget_simple_extent_npoints(H5dsid);
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("testH5Rget_region_attribute: H5Sget_simple_extent_ndims: " + err);
- }
- refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE];
- // Read the reference from the dataset.
- try {
- H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF,
- HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, refbuf);
- }
- catch (Exception err) {
- err.printStackTrace();
- fail("testH5Rget_region_attribute: H5Dread: " + err);
- }
+ try {
+ openH5file(H5_DREG_FILE, objName);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5Rget_region_dataset: openH5file: " + err);
+ }
+ try {
+ f_type = H5.H5Dget_type(H5did);
+ int result = H5.H5Tget_class(f_type);
+ assertTrue("testH5Rget_region_dataset: H5Tget_class", result > 0);
+ String class_name = H5.H5Tget_class_name(result);
+ assertTrue("testH5Rget_region_dataset: H5Tget_class=" + class_name,
+ class_name.compareTo("H5T_REFERENCE") == 0);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5Rget_region_dataset: " + err);
+ }
+ finally {
+ try {
+ H5.H5Tclose(f_type);
+ }
+ catch (Exception ex) {
+ }
+ }
+ try {
+ ndims = (int)H5.H5Sget_simple_extent_npoints(H5dsid);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5Rget_region_dataset: H5Sget_simple_extent_ndims: " + err);
+ }
+ refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE];
+ // Read the reference from the dataset.
+ try {
+ H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, refbuf);
+ }
+ catch (Exception err) {
+ err.printStackTrace();
+ fail("testH5Rget_obj_type3: H5Dread: " + err);
+ }
+ for (int i = 0; i < ndims; i++) {
+ try {
+ try {
+ ret_val = H5.H5Rget_type(refbuf[i]);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5Rget_region_dataset: H5Rget_type[" + i + "]: " + err);
+ }
+ assertTrue("testH5Rget_region_dataset: H5Rget_type[" + i + "]=" + ret_val,
+ ret_val == ref_type);
+ try {
+ loc_id =
+ H5.H5Ropen_object(refbuf[i], HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ assertTrue(loc_id >= 0);
+ try {
+ loc_sid = H5.H5Ropen_region(refbuf[i], HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
+ assertTrue(loc_sid >= 0);
+ int region_type = -1;
+ try {
+ int reg_ndims = H5.H5Sget_simple_extent_ndims(loc_sid);
+ region_type = H5.H5Sget_select_type(loc_sid);
+ if (i == 1)
+ assertTrue(region_type == HDF5Constants.H5S_SEL_POINTS);
+ else
+ assertTrue(region_type == HDF5Constants.H5S_SEL_HYPERSLABS);
+ if (region_type == HDF5Constants.H5S_SEL_POINTS) {
+ long reg_npoints = H5.H5Sget_select_elem_npoints(loc_sid);
+ // Coordinates for get point selection
+ long getcoord[] = new long[reg_ndims * (int)reg_npoints];
+ // Known coordinates for point selection
+ long coord[][] = {{6, 9}, {2, 2}, {8, 4}, {1, 6}, {2, 8},
+ {3, 2}, {0, 4}, {9, 0}, {7, 1}, {3, 3}};
+ try {
+ H5.H5Sget_select_elem_pointlist(loc_sid, 0, reg_npoints, getcoord);
+ assertTrue("H5.H5Sget_select_elem_pointlist", coord[0][0] == getcoord[0]);
+ assertTrue("H5.H5Sget_select_elem_pointlist", coord[0][1] == getcoord[1]);
+ assertTrue("H5.H5Sget_select_elem_pointlist", coord[1][0] == getcoord[2]);
+ assertTrue("H5.H5Sget_select_elem_pointlist", coord[1][1] == getcoord[3]);
+ assertTrue("H5.H5Sget_select_elem_pointlist", coord[2][0] == getcoord[4]);
+ assertTrue("H5.H5Sget_select_elem_pointlist", coord[2][1] == getcoord[5]);
+ }
+ catch (Throwable err3) {
+ err3.printStackTrace();
+ fail("H5.H5Sget_select_elem_pointlist: " + err3);
+ }
+ }
+ else if (region_type == HDF5Constants.H5S_SEL_HYPERSLABS) {
+ long reg_nblocks = H5.H5Sget_select_hyper_nblocks(loc_sid);
+ assertTrue("H5Sget_select_hyper_nblocks", reg_nblocks == 1);
+ // Coordinates for get block selection
+ long getblocks[] = new long[reg_ndims * (int)reg_nblocks * 2];
+ long start[] = {2, 2};
+ long block[] = {8, 8};
+ try {
+ H5.H5Sget_select_hyper_blocklist(loc_sid, 0, reg_nblocks, getblocks);
+ assertTrue("H5.H5Sget_select_hyper_blocklist", start[0] == getblocks[0]);
+ assertTrue("H5.H5Sget_select_hyper_blocklist", start[1] == getblocks[1]);
+ assertTrue("H5.H5Sget_select_hyper_blocklist",
+ (block[0] - 1) == getblocks[2]);
+ assertTrue("H5.H5Sget_select_hyper_blocklist",
+ (block[1] - 1) == getblocks[3]);
+ }
+ catch (Throwable err3) {
+ err3.printStackTrace();
+ fail("H5.H5Sget_select_hyper_blocklist: " + err3);
+ }
+ }
+ }
+ catch (Throwable err2) {
+ err2.printStackTrace();
+ assertTrue("testH5Rget_region_dataset: H5Sget_select_type: " + err2, i > 1);
+ }
+ }
+ catch (Throwable err1) {
+ err1.printStackTrace();
+ fail("testH5Rget_region_dataset: " + err1);
+ }
+ finally {
+ try {
+ H5.H5Sclose(loc_sid);
+ }
+ catch (Exception ex) {
+ }
+ }
+ }
+ catch (Throwable err0) {
+ err0.printStackTrace();
+ fail("testH5Rget_region_dataset: " + err0);
+ }
+ finally {
+ try {
+ H5.H5Dclose(loc_id);
+ }
+ catch (Exception ex) {
+ }
+ }
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5Rget_region_dataset: H5Rget_type: " + err);
+ }
+ finally {
+ H5.H5Rdestroy(refbuf[i]);
+ }
+ } // for (int i = 0; i < ndims; i++)
+ }
- for (int i = 0; i < ndims; i++) {
- try {
- ret_val = H5.H5Rget_type(refbuf[i]);
- assertTrue("testH5Rget_region_attribute: H5Rget_type["+i+"]="+ret_val, ret_val == ref_type);
- try {
- loc_id = H5.H5Ropen_attr(refbuf[i], HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
- assertTrue(loc_id >= 0);
- if (!byteArrayCheck(refbuf[i])) {
- try {
- loc_sid = H5.H5Aget_space(loc_id);
- assertTrue(loc_sid >= 0);
- }
- catch (Throwable err1) {
- err1.printStackTrace();
- fail("testH5Rget_region_attribute: " + err1);
- }
- finally {
- try {H5.H5Sclose(loc_sid);} catch (Exception ex) {}
- }
- }
- }
- catch (Throwable err0) {
- err0.printStackTrace();
- // second attribute is null
- assertTrue("testH5Rget_region_attribute: " + err0, i == 1);
- }
- finally {
- try {H5.H5Aclose(loc_id);} catch (Exception ex) {}
- }
- }
- catch (Throwable err) {
- err.printStackTrace();
- fail("testH5Rget_region_attribute: H5Rget_type: " + err);
- }
- finally {
- H5.H5Rdestroy(refbuf[i]);
- }
- }
- }
+ @Test
+ public void testH5Rget_region_attribute()
+ {
+ long f_type = HDF5Constants.H5I_INVALID_HID;
+ long loc_id = HDF5Constants.H5I_INVALID_HID;
+ long loc_sid = HDF5Constants.H5I_INVALID_HID;
+ int ref_type = HDF5Constants.H5R_ATTR;
+ int obj_type = -1;
+ int ndims = 1;
+ long ret_val = -1;
+ byte[][] refbuf = null;
+ String objName = "/Dataset3";
+ try {
+ openH5file(H5_AREG_FILE, objName);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5Rget_region_attribute: openH5file: " + err);
+ }
+ try {
+ f_type = H5.H5Dget_type(H5did);
+ int result = H5.H5Tget_class(f_type);
+ assertTrue("testH5Rget_region_attribute: H5Tget_class", result > 0);
+ String class_name = H5.H5Tget_class_name(result);
+ assertTrue("testH5Rget_region_attribute: H5Tget_class=" + class_name,
+ class_name.compareTo("H5T_REFERENCE") == 0);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5Rget_region_attribute: " + err);
+ }
+ finally {
+ try {
+ H5.H5Tclose(f_type);
+ }
+ catch (Exception ex) {
+ }
+ }
+ try {
+ ndims = (int)H5.H5Sget_simple_extent_npoints(H5dsid);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5Rget_region_attribute: H5Sget_simple_extent_ndims: " + err);
+ }
+ refbuf = new byte[ndims][HDF5Constants.H5R_REF_BUF_SIZE];
+ // Read the reference from the dataset.
+ try {
+ H5.H5Dread(H5did, HDF5Constants.H5T_STD_REF, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, refbuf);
+ }
+ catch (Exception err) {
+ err.printStackTrace();
+ fail("testH5Rget_region_attribute: H5Dread: " + err);
+ }
-// These tests need to be updated with new APIs
-// @Test//
-// public void testH5Rget_group() {
-// long loc_id = H5fid;
-// int ref_type = HDF5Constants.H5R_OBJECT2;
-// long ret_val = -1;
-// byte[] ref = null;
-// String name = "";
-// String objName = "/dset";
-//
-// try {
-// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
-// }
-// catch (Throwable err) {
-// err.printStackTrace();
-// fail("testH5Rget_object: H5Rcreate_object " + err);
-// }
-// try {
-// dataset_id= H5.H5Rdereference(H5fid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_DATASET_REGION, ref1);
-//
-// //Create reference on group
-// ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1);
-// group_id= H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref2);
-// assertNotNull(ref1);
-// assertNotNull(ref2);
-// assertTrue(dataset_id >= 0);
-// assertTrue(group_id >= 0);
-// }
-// catch (Throwable err) {
-// err.printStackTrace();
-// fail("TestH5Rdereference " + err);
-// }
-// finally {
-// try {H5.H5Dclose(dataset_id);} catch (Exception ex) {}
-// try {H5.H5Gclose(group_id);} catch (Exception ex) {}
-// }
-// }
+ for (int i = 0; i < ndims; i++) {
+ try {
+ ret_val = H5.H5Rget_type(refbuf[i]);
+ assertTrue("testH5Rget_region_attribute: H5Rget_type[" + i + "]=" + ret_val,
+ ret_val == ref_type);
+ try {
+ loc_id = H5.H5Ropen_attr(refbuf[i], HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ assertTrue(loc_id >= 0);
+ if (!byteArrayCheck(refbuf[i])) {
+ try {
+ loc_sid = H5.H5Aget_space(loc_id);
+ assertTrue(loc_sid >= 0);
+ }
+ catch (Throwable err1) {
+ err1.printStackTrace();
+ fail("testH5Rget_region_attribute: " + err1);
+ }
+ finally {
+ try {
+ H5.H5Sclose(loc_sid);
+ }
+ catch (Exception ex) {
+ }
+ }
+ }
+ }
+ catch (Throwable err0) {
+ err0.printStackTrace();
+ // second attribute is null
+ assertTrue("testH5Rget_region_attribute: " + err0, i == 1);
+ }
+ finally {
+ try {
+ H5.H5Aclose(loc_id);
+ }
+ catch (Exception ex) {
+ }
+ }
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5Rget_region_attribute: H5Rget_type: " + err);
+ }
+ finally {
+ H5.H5Rdestroy(refbuf[i]);
+ }
+ }
+ }
-// @Test//
-// public void testH5Rget_attr() {
-// long loc_id = H5fid;
-// int ref_type = HDF5Constants.H5R_OBJECT2;
-// long ret_val = -1;
-// byte[] ref = null;
-// String name = "";
-// String objName = "/dset";
-//
-// try {
-// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
-// }
-// catch (Throwable err) {
-// err.printStackTrace();
-// fail("testH5Rget_object: H5Rcreate_object " + err);
-// }
-// try {
-// dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref);
-// assertNotNull(ref);
-// assertTrue(dsid >= 0);
-// }
-// catch (Throwable err) {
-// err.printStackTrace();
-// fail("TestH5Rget_region: " + err);
-// }
-// finally {
-// try {H5.H5Sclose(dsid);} catch (Exception ex) {}
-// }
-// }
+ // These tests need to be updated with new APIs
+ // @Test//
+ // public void testH5Rget_group() {
+ // long loc_id = H5fid;
+ // int ref_type = HDF5Constants.H5R_OBJECT2;
+ // long ret_val = -1;
+ // byte[] ref = null;
+ // String name = "";
+ // String objName = "/dset";
+ //
+ // try {
+ // ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
+ // }
+ // catch (Throwable err) {
+ // err.printStackTrace();
+ // fail("testH5Rget_object: H5Rcreate_object " + err);
+ // }
+ // try {
+ // dataset_id= H5.H5Rdereference(H5fid, HDF5Constants.H5P_DEFAULT,
+ // HDF5Constants.H5R_DATASET_REGION, ref1);
+ //
+ // //Create reference on group
+ // ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1);
+ // group_id= H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT,
+ // ref2); assertNotNull(ref1); assertNotNull(ref2); assertTrue(dataset_id >= 0);
+ // assertTrue(group_id >= 0);
+ // }
+ // catch (Throwable err) {
+ // err.printStackTrace();
+ // fail("TestH5Rdereference " + err);
+ // }
+ // finally {
+ // try {H5.H5Dclose(dataset_id);} catch (Exception ex) {}
+ // try {H5.H5Gclose(group_id);} catch (Exception ex) {}
+ // }
+ // }
+ // @Test//
+ // public void testH5Rget_attr() {
+ // long loc_id = H5fid;
+ // int ref_type = HDF5Constants.H5R_OBJECT2;
+ // long ret_val = -1;
+ // byte[] ref = null;
+ // String name = "";
+ // String objName = "/dset";
+ //
+ // try {
+ // ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
+ // }
+ // catch (Throwable err) {
+ // err.printStackTrace();
+ // fail("testH5Rget_object: H5Rcreate_object " + err);
+ // }
+ // try {
+ // dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref);
+ // assertNotNull(ref);
+ // assertTrue(dsid >= 0);
+ // }
+ // catch (Throwable err) {
+ // err.printStackTrace();
+ // fail("TestH5Rget_region: " + err);
+ // }
+ // finally {
+ // try {H5.H5Sclose(dsid);} catch (Exception ex) {}
+ // }
+ // }
}