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Diffstat (limited to 'java/test/TestH5T.java')
| -rw-r--r-- | java/test/TestH5T.java | 529 |
1 files changed, 529 insertions, 0 deletions
diff --git a/java/test/TestH5T.java b/java/test/TestH5T.java new file mode 100644 index 0000000..0121cc2 --- /dev/null +++ b/java/test/TestH5T.java @@ -0,0 +1,529 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://www.hdfgroup.org/licenses. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +package test; + +import static org.junit.Assert.assertFalse; +import static org.junit.Assert.assertTrue; +import static org.junit.Assert.fail; + +import java.io.File; + +import hdf.hdf5lib.H5; +import hdf.hdf5lib.HDF5Constants; +import hdf.hdf5lib.exceptions.HDF5Exception; +import hdf.hdf5lib.exceptions.HDF5LibraryException; + +import org.junit.After; +import org.junit.Before; +import org.junit.Rule; +import org.junit.Test; +import org.junit.rules.TestName; + +public class TestH5T { + @Rule + public TestName testname = new TestName(); + private static final String H5_FILE = "testT.h5"; + long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5strdid = HDF5Constants.H5I_INVALID_HID; + + private final void _deleteFile(String filename) + { + File file = null; + try { + file = new File(filename); + } + catch (Throwable err) { + } + + if (file.exists()) { + try { + file.delete(); + } + catch (SecurityException e) { + } + } + } + + @Before + public void createH5file() throws NullPointerException, HDF5Exception + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); + System.out.print(testname.getMethodName()); + + H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); + assertTrue("H5.H5Fcreate", H5fid > 0); + H5strdid = H5.H5Tcopy(HDF5Constants.H5T_C_S1); + assertTrue("H5.H5Tcopy", H5strdid > 0); + + H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); + } + + @After + public void deleteH5file() throws HDF5LibraryException + { + if (H5strdid >= 0) + try { + H5.H5Tclose(H5strdid); + } + catch (Exception ex) { + } + if (H5fid > 0) + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } + + _deleteFile(H5_FILE); + System.out.println(); + } + + @Test(expected = HDF5LibraryException.class) + public void testH5Tequal_type_error() throws Throwable + { + H5.H5Tequal(HDF5Constants.H5T_INTEGER, H5strdid); + } + + @Test + public void testH5Tget_class() + { + try { + int result = H5.H5Tget_class(H5strdid); + assertTrue("H5.H5Tget_class", result > 0); + String class_name = H5.H5Tget_class_name(result); + assertTrue("H5.H5Tget_class", class_name.compareTo("H5T_STRING") == 0); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tget_class: " + err); + } + } + + @Test + public void testH5Tget_size() + { + long dt_size = -1; + + try { + dt_size = H5.H5Tget_size(H5strdid); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tget_size:H5.H5Tget_size " + err); + } + assertTrue("testH5Tget_size", dt_size > 0); + } + + @Test + public void testH5Tset_size() + { + long dt_size = 5; + + try { + H5.H5Tset_size(H5strdid, dt_size); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tset_size:H5.H5Tset_size " + err); + } + try { + dt_size = H5.H5Tget_size(H5strdid); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tget_size:H5.H5Tget_size " + err); + } + assertTrue("testH5Tget_size", dt_size == 5); + } + + @Test + public void testH5Tarray_create() + { + long filetype_id = HDF5Constants.H5I_INVALID_HID; + long[] adims = {3, 5}; + + try { + filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims); + assertTrue("testH5Tarray_create", filetype_id >= 0); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tarray_create.H5Tarray_create " + err); + } + finally { + if (filetype_id >= 0) + try { + H5.H5Tclose(filetype_id); + } + catch (Exception ex) { + } + } + } + + @Test + public void testH5Tget_array_ndims() + { + long filetype_id = HDF5Constants.H5I_INVALID_HID; + int ndims = 0; + long[] adims = {3, 5}; + + try { + filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tarray_create.H5Tarray_create " + err); + } + assertTrue("testH5Tget_array_ndims:H5Tarray_create", filetype_id >= 0); + try { + ndims = H5.H5Tget_array_ndims(filetype_id); + assertTrue("testH5Tget_array_ndims", ndims == 2); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tget_array_ndims.H5Tget_array_ndims " + err); + } + finally { + if (filetype_id >= 0) + try { + H5.H5Tclose(filetype_id); + } + catch (Exception ex) { + } + } + } + + @Test + public void testH5Tget_array_dims() + { + long filetype_id = HDF5Constants.H5I_INVALID_HID; + int ndims = 0; + long[] adims = {3, 5}; + long[] rdims = new long[2]; + + try { + filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tarray_create.H5Tarray_create " + err); + } + assertTrue("testH5Tget_array_dims:H5Tarray_create", filetype_id >= 0); + try { + ndims = H5.H5Tget_array_dims(filetype_id, rdims); + assertTrue("testH5Tget_array_dims", ndims == 2); + assertTrue("testH5Tget_array_dims", adims[0] == rdims[0]); + assertTrue("testH5Tget_array_dims", adims[1] == rdims[1]); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tget_array_dims.H5Tget_array_dims " + err); + } + finally { + if (filetype_id >= 0) + try { + H5.H5Tclose(filetype_id); + } + catch (Exception ex) { + } + } + } + + @Test + public void testH5Tenum_functions() + { + long filetype_id = HDF5Constants.H5I_INVALID_HID; + String enum_type = "Enum_type"; + byte[] enum_val = new byte[1]; + String enum_name = null; + + // Create a enumerate datatype + try { + filetype_id = H5.H5Tcreate(HDF5Constants.H5T_ENUM, (long)1); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tenum_functions:H5Tcreate " + err); + } + assertTrue("testH5Tenum_functions:H5Tcreate", filetype_id >= 0); + try { + enum_val[0] = 10; + H5.H5Tenum_insert(filetype_id, "RED", enum_val); + enum_val[0] = 11; + H5.H5Tenum_insert(filetype_id, "GREEN", enum_val); + enum_val[0] = 12; + H5.H5Tenum_insert(filetype_id, "BLUE", enum_val); + enum_val[0] = 13; + H5.H5Tenum_insert(filetype_id, "ORANGE", enum_val); + enum_val[0] = 14; + H5.H5Tenum_insert(filetype_id, "YELLOW", enum_val); + + // Query member number and member index by member name, for enumeration type. + assertTrue("Can't get member number", H5.H5Tget_nmembers(filetype_id) == 5); + assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "ORANGE") == 3); + + // Commit enumeration datatype and close it */ + H5.H5Tcommit(H5fid, enum_type, filetype_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); + + H5.H5Tclose(filetype_id); + + // Open the dataytpe for query + filetype_id = H5.H5Topen(H5fid, enum_type, HDF5Constants.H5P_DEFAULT); + assertTrue("testH5Tenum_functions:H5Tcreate", filetype_id >= 0); + + // Query member number and member index by member name, for enumeration type + assertTrue("Can't get member number", H5.H5Tget_nmembers(filetype_id) == 5); + assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "ORANGE") == 3); + + // Query member value by member name, for enumeration type + H5.H5Tenum_valueof(filetype_id, "ORANGE", enum_val); + assertTrue("Incorrect value for enum member", enum_val[0] == 13); + + // Query member value by member index, for enumeration type + H5.H5Tget_member_value(filetype_id, 2, enum_val); + assertTrue("Incorrect value for enum member", enum_val[0] == 12); + + // Query member name by member value, for enumeration type + enum_val[0] = 14; + enum_name = H5.H5Tenum_nameof(filetype_id, enum_val, 16); + assertTrue("Incorrect name for enum member", enum_name.compareTo("YELLOW") == 0); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tenum_functions:query " + err); + } + finally { + if (filetype_id >= 0) + try { + H5.H5Tclose(filetype_id); + } + catch (Exception ex) { + } + } + } + + @Test + public void testH5Tenum_create_functions() + { + long filetype_id = HDF5Constants.H5I_INVALID_HID; + byte[] enum_val = new byte[1]; + + // Create a enumerate datatype + try { + filetype_id = H5.H5Tenum_create(HDF5Constants.H5T_NATIVE_INT); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tenum_create_functions:H5Tcreate " + err); + } + assertTrue("testH5Tenum_create_functions:H5Tcreate", filetype_id >= 0); + try { + enum_val[0] = 10; + H5.H5Tenum_insert(filetype_id, "RED", enum_val); + enum_val[0] = 11; + H5.H5Tenum_insert(filetype_id, "GREEN", enum_val); + enum_val[0] = 12; + H5.H5Tenum_insert(filetype_id, "BLUE", enum_val); + enum_val[0] = 13; + H5.H5Tenum_insert(filetype_id, "ORANGE", enum_val); + enum_val[0] = 14; + H5.H5Tenum_insert(filetype_id, "YELLOW", enum_val); + + // Query member number and member index by member name, for enumeration type. + assertTrue("Can't get member number", H5.H5Tget_nmembers(filetype_id) == 5); + assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "ORANGE") == 3); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tenum_create_functions:H5Tget_nmembers " + err); + } + finally { + if (filetype_id >= 0) + try { + H5.H5Tclose(filetype_id); + } + catch (Exception ex) { + } + } + } + + @Test + public void testH5Topaque_functions() + { + long filetype_id = HDF5Constants.H5I_INVALID_HID; + String opaque_name = null; + + // Create a opaque datatype + try { + filetype_id = H5.H5Tcreate(HDF5Constants.H5T_OPAQUE, (long)4); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Topaque_functions:H5Tcreate " + err); + } + assertTrue("testH5Topaque_functions:H5Tcreate", filetype_id >= 0); + + try { + H5.H5Tset_tag(filetype_id, "opaque type"); + opaque_name = H5.H5Tget_tag(filetype_id); + assertTrue("Incorrect tag for opaque type", opaque_name.compareTo("opaque type") == 0); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Topaque_functions:H5Tset_get_tag " + err); + } + finally { + if (filetype_id >= 0) + try { + H5.H5Tclose(filetype_id); + } + catch (Exception ex) { + } + } + } + + @Test + public void testH5Tvlen_create() + { + long filetype_id = HDF5Constants.H5I_INVALID_HID; + + try { + filetype_id = H5.H5Tvlen_create(HDF5Constants.H5T_C_S1); + assertTrue("testH5Tvlen_create", filetype_id >= 0); + + // Check if datatype is VL type + int vlclass = H5.H5Tget_class(filetype_id); + assertTrue("testH5Tvlen_create:H5Tget_class", vlclass == HDF5Constants.H5T_VLEN); + assertFalse("testH5Tis_variable_str:H5Tget_class", vlclass == HDF5Constants.H5T_STRING); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tvlen_create.H5Tvlen_create " + err); + } + finally { + if (filetype_id >= 0) + try { + H5.H5Tclose(filetype_id); + } + catch (Exception ex) { + } + } + } + + @Test + public void testH5Tis_variable_str() + { + long filetype_id = HDF5Constants.H5I_INVALID_HID; + + try { + filetype_id = H5.H5Tcopy(HDF5Constants.H5T_C_S1); + assertTrue("testH5Tis_variable_str.H5Tcopy: ", filetype_id >= 0); + + // Convert to variable-length string + H5.H5Tset_size(filetype_id, HDF5Constants.H5T_VARIABLE); + + // Check if datatype is VL string + int vlclass = H5.H5Tget_class(filetype_id); + assertTrue("testH5Tis_variable_str:H5Tget_class", vlclass == HDF5Constants.H5T_STRING); + assertFalse("testH5Tvlen_create:H5Tget_class", vlclass == HDF5Constants.H5T_VLEN); + + assertTrue("testH5Tis_variable_str:H5Tis_variable_str", H5.H5Tis_variable_str(filetype_id)); + + // Verify that the class detects as a string + assertTrue("testH5Tis_variable_str:H5Tdetect_class", + H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_STRING)); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tis_variable_str " + err); + } + finally { + if (filetype_id >= 0) + try { + H5.H5Tclose(filetype_id); + } + catch (Exception ex) { + } + } + } + + @Test + public void testH5Tcompound_functions() + { + long filetype_id = HDF5Constants.H5I_INVALID_HID; + + // Create a compound datatype + try { + filetype_id = H5.H5Tcreate(HDF5Constants.H5T_COMPOUND, (long)16); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tcompound_functions:H5Tcreate " + err); + } + assertTrue("testH5Tcompound_functions:H5Tcreate", filetype_id >= 0); + try { + H5.H5Tinsert(filetype_id, "Lon", 0, HDF5Constants.H5T_NATIVE_DOUBLE); + H5.H5Tinsert(filetype_id, "Lat", 8, HDF5Constants.H5T_NATIVE_DOUBLE); + + // Query member number and member index by member name, for enumeration type. + assertTrue("Can't get member number", H5.H5Tget_nmembers(filetype_id) == 2); + assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "Lat") == 1); + + // We started to support this function for compound type in 1.8.6 release. + int order = H5.H5Tget_order(filetype_id); + assertFalse("Can't get order for compound type.", order == HDF5Constants.H5T_ORDER_ERROR); + assertTrue("Wrong order for this type.", + (order == HDF5Constants.H5T_ORDER_LE) || (order == HDF5Constants.H5T_ORDER_BE)); + + // Make certain that the correct classes can be detected + assertTrue("Can't get correct class", + H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_COMPOUND)); + assertTrue("Can't get correct class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_FLOAT)); + // Make certain that an incorrect class is not detected + assertFalse("Can get incorrect class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_TIME)); + + // Query member name by member index + String index_name = H5.H5Tget_member_name(filetype_id, 0); + assertTrue("Incorrect name for member index", index_name.compareTo("Lon") == 0); + + // Query member offset by member no + long index_offset = H5.H5Tget_member_offset(filetype_id, 1); + assertTrue("Incorrect offset for member no", index_offset == 8); + + // Query member type by member index + long index_type = H5.H5Tget_member_type(filetype_id, 0); + assertTrue("Incorrect type for member index", + H5.H5Tequal(HDF5Constants.H5T_NATIVE_DOUBLE, index_type)); + if (index_type >= 0) + try { + H5.H5Tclose(index_type); + } + catch (Exception ex) { + } + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tcompound_functions:query " + err); + } + finally { + if (filetype_id >= 0) + try { + H5.H5Tclose(filetype_id); + } + catch (Exception ex) { + } + } + } +} |