diff options
Diffstat (limited to 'java/test/TestH5T.java')
| -rw-r--r-- | java/test/TestH5T.java | 429 |
1 files changed, 251 insertions, 178 deletions
diff --git a/java/test/TestH5T.java b/java/test/TestH5T.java index ed4e2a9..0121cc2 100644 --- a/java/test/TestH5T.java +++ b/java/test/TestH5T.java @@ -30,30 +30,38 @@ import org.junit.Test; import org.junit.rules.TestName; public class TestH5T { - @Rule public TestName testname = new TestName(); + @Rule + public TestName testname = new TestName(); private static final String H5_FILE = "testT.h5"; - long H5fid = HDF5Constants.H5I_INVALID_HID; - long H5strdid = HDF5Constants.H5I_INVALID_HID; + long H5fid = HDF5Constants.H5I_INVALID_HID; + long H5strdid = HDF5Constants.H5I_INVALID_HID; - private final void _deleteFile(String filename) { + private final void _deleteFile(String filename) + { File file = null; try { file = new File(filename); } - catch (Throwable err) {} + catch (Throwable err) { + } if (file.exists()) { - try {file.delete();} catch (SecurityException e) {} + try { + file.delete(); + } + catch (SecurityException e) { + } } } @Before - public void createH5file() throws NullPointerException, HDF5Exception { - assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0); + public void createH5file() throws NullPointerException, HDF5Exception + { + assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0); System.out.print(testname.getMethodName()); - H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); assertTrue("H5.H5Fcreate", H5fid > 0); H5strdid = H5.H5Tcopy(HDF5Constants.H5T_C_S1); assertTrue("H5.H5Tcopy", H5strdid > 0); @@ -62,28 +70,39 @@ public class TestH5T { } @After - public void deleteH5file() throws HDF5LibraryException { + public void deleteH5file() throws HDF5LibraryException + { if (H5strdid >= 0) - try {H5.H5Tclose(H5strdid);} catch (Exception ex) {} + try { + H5.H5Tclose(H5strdid); + } + catch (Exception ex) { + } if (H5fid > 0) - try {H5.H5Fclose(H5fid);} catch (Exception ex) {} + try { + H5.H5Fclose(H5fid); + } + catch (Exception ex) { + } _deleteFile(H5_FILE); System.out.println(); } @Test(expected = HDF5LibraryException.class) - public void testH5Tequal_type_error() throws Throwable { + public void testH5Tequal_type_error() throws Throwable + { H5.H5Tequal(HDF5Constants.H5T_INTEGER, H5strdid); } @Test - public void testH5Tget_class() { + public void testH5Tget_class() + { try { int result = H5.H5Tget_class(H5strdid); assertTrue("H5.H5Tget_class", result > 0); String class_name = H5.H5Tget_class_name(result); - assertTrue("H5.H5Tget_class", class_name.compareTo("H5T_STRING")==0); + assertTrue("H5.H5Tget_class", class_name.compareTo("H5T_STRING") == 0); } catch (Throwable err) { err.printStackTrace(); @@ -92,7 +111,8 @@ public class TestH5T { } @Test - public void testH5Tget_size() { + public void testH5Tget_size() + { long dt_size = -1; try { @@ -106,7 +126,8 @@ public class TestH5T { } @Test - public void testH5Tset_size() { + public void testH5Tset_size() + { long dt_size = 5; try { @@ -127,89 +148,105 @@ public class TestH5T { } @Test - public void testH5Tarray_create() { - long filetype_id = HDF5Constants.H5I_INVALID_HID; - long[] adims = { 3, 5 }; - - try { - filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims); - assertTrue("testH5Tarray_create", filetype_id >= 0); - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Tarray_create.H5Tarray_create " + err); - } - finally { - if (filetype_id >= 0) - try {H5.H5Tclose(filetype_id);} catch (Exception ex) {} - } + public void testH5Tarray_create() + { + long filetype_id = HDF5Constants.H5I_INVALID_HID; + long[] adims = {3, 5}; + + try { + filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims); + assertTrue("testH5Tarray_create", filetype_id >= 0); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tarray_create.H5Tarray_create " + err); + } + finally { + if (filetype_id >= 0) + try { + H5.H5Tclose(filetype_id); + } + catch (Exception ex) { + } + } } @Test - public void testH5Tget_array_ndims() { - long filetype_id = HDF5Constants.H5I_INVALID_HID; - int ndims = 0; - long[] adims = { 3, 5 }; - - try { - filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims); - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Tarray_create.H5Tarray_create " + err); - } - assertTrue("testH5Tget_array_ndims:H5Tarray_create", filetype_id >= 0); - try { - ndims = H5.H5Tget_array_ndims(filetype_id); - assertTrue("testH5Tget_array_ndims", ndims == 2); - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Tget_array_ndims.H5Tget_array_ndims " + err); - } - finally { - if (filetype_id >= 0) - try {H5.H5Tclose(filetype_id);} catch (Exception ex) {} - } + public void testH5Tget_array_ndims() + { + long filetype_id = HDF5Constants.H5I_INVALID_HID; + int ndims = 0; + long[] adims = {3, 5}; + + try { + filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tarray_create.H5Tarray_create " + err); + } + assertTrue("testH5Tget_array_ndims:H5Tarray_create", filetype_id >= 0); + try { + ndims = H5.H5Tget_array_ndims(filetype_id); + assertTrue("testH5Tget_array_ndims", ndims == 2); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tget_array_ndims.H5Tget_array_ndims " + err); + } + finally { + if (filetype_id >= 0) + try { + H5.H5Tclose(filetype_id); + } + catch (Exception ex) { + } + } } @Test - public void testH5Tget_array_dims() { - long filetype_id = HDF5Constants.H5I_INVALID_HID; - int ndims = 0; - long[] adims = { 3, 5 }; - long[] rdims = new long[2]; - - try { - filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims); - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Tarray_create.H5Tarray_create " + err); - } - assertTrue("testH5Tget_array_dims:H5Tarray_create", filetype_id >= 0); - try { - ndims = H5.H5Tget_array_dims(filetype_id, rdims); - assertTrue("testH5Tget_array_dims", ndims == 2); - assertTrue("testH5Tget_array_dims", adims[0] == rdims[0]); - assertTrue("testH5Tget_array_dims", adims[1] == rdims[1]); - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Tget_array_dims.H5Tget_array_dims " + err); - } - finally { - if (filetype_id >= 0) - try {H5.H5Tclose(filetype_id);} catch (Exception ex) {} - } + public void testH5Tget_array_dims() + { + long filetype_id = HDF5Constants.H5I_INVALID_HID; + int ndims = 0; + long[] adims = {3, 5}; + long[] rdims = new long[2]; + + try { + filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tarray_create.H5Tarray_create " + err); + } + assertTrue("testH5Tget_array_dims:H5Tarray_create", filetype_id >= 0); + try { + ndims = H5.H5Tget_array_dims(filetype_id, rdims); + assertTrue("testH5Tget_array_dims", ndims == 2); + assertTrue("testH5Tget_array_dims", adims[0] == rdims[0]); + assertTrue("testH5Tget_array_dims", adims[1] == rdims[1]); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tget_array_dims.H5Tget_array_dims " + err); + } + finally { + if (filetype_id >= 0) + try { + H5.H5Tclose(filetype_id); + } + catch (Exception ex) { + } + } } @Test - public void testH5Tenum_functions() { - long filetype_id = HDF5Constants.H5I_INVALID_HID; - String enum_type ="Enum_type"; - byte[] enum_val = new byte[1]; - String enum_name = null; + public void testH5Tenum_functions() + { + long filetype_id = HDF5Constants.H5I_INVALID_HID; + String enum_type = "Enum_type"; + byte[] enum_val = new byte[1]; + String enum_name = null; // Create a enumerate datatype try { @@ -221,15 +258,15 @@ public class TestH5T { } assertTrue("testH5Tenum_functions:H5Tcreate", filetype_id >= 0); try { - enum_val[0]=10; + enum_val[0] = 10; H5.H5Tenum_insert(filetype_id, "RED", enum_val); - enum_val[0]=11; + enum_val[0] = 11; H5.H5Tenum_insert(filetype_id, "GREEN", enum_val); - enum_val[0]=12; + enum_val[0] = 12; H5.H5Tenum_insert(filetype_id, "BLUE", enum_val); - enum_val[0]=13; + enum_val[0] = 13; H5.H5Tenum_insert(filetype_id, "ORANGE", enum_val); - enum_val[0]=14; + enum_val[0] = 14; H5.H5Tenum_insert(filetype_id, "YELLOW", enum_val); // Query member number and member index by member name, for enumeration type. @@ -237,7 +274,8 @@ public class TestH5T { assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "ORANGE") == 3); // Commit enumeration datatype and close it */ - H5.H5Tcommit(H5fid, enum_type, filetype_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + H5.H5Tcommit(H5fid, enum_type, filetype_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT); H5.H5Tclose(filetype_id); @@ -250,17 +288,17 @@ public class TestH5T { assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "ORANGE") == 3); // Query member value by member name, for enumeration type - H5.H5Tenum_valueof (filetype_id, "ORANGE", enum_val); - assertTrue("Incorrect value for enum member", enum_val[0]==13); + H5.H5Tenum_valueof(filetype_id, "ORANGE", enum_val); + assertTrue("Incorrect value for enum member", enum_val[0] == 13); // Query member value by member index, for enumeration type - H5.H5Tget_member_value (filetype_id, 2, enum_val); - assertTrue("Incorrect value for enum member", enum_val[0]==12); + H5.H5Tget_member_value(filetype_id, 2, enum_val); + assertTrue("Incorrect value for enum member", enum_val[0] == 12); // Query member name by member value, for enumeration type enum_val[0] = 14; - enum_name = H5.H5Tenum_nameof(filetype_id, enum_val, 16); - assertTrue("Incorrect name for enum member", enum_name.compareTo("YELLOW")==0); + enum_name = H5.H5Tenum_nameof(filetype_id, enum_val, 16); + assertTrue("Incorrect name for enum member", enum_name.compareTo("YELLOW") == 0); } catch (Throwable err) { err.printStackTrace(); @@ -268,14 +306,19 @@ public class TestH5T { } finally { if (filetype_id >= 0) - try {H5.H5Tclose(filetype_id);} catch (Exception ex) {} + try { + H5.H5Tclose(filetype_id); + } + catch (Exception ex) { + } } } @Test - public void testH5Tenum_create_functions() { - long filetype_id = HDF5Constants.H5I_INVALID_HID; - byte[] enum_val = new byte[1]; + public void testH5Tenum_create_functions() + { + long filetype_id = HDF5Constants.H5I_INVALID_HID; + byte[] enum_val = new byte[1]; // Create a enumerate datatype try { @@ -287,15 +330,15 @@ public class TestH5T { } assertTrue("testH5Tenum_create_functions:H5Tcreate", filetype_id >= 0); try { - enum_val[0]=10; + enum_val[0] = 10; H5.H5Tenum_insert(filetype_id, "RED", enum_val); - enum_val[0]=11; + enum_val[0] = 11; H5.H5Tenum_insert(filetype_id, "GREEN", enum_val); - enum_val[0]=12; + enum_val[0] = 12; H5.H5Tenum_insert(filetype_id, "BLUE", enum_val); - enum_val[0]=13; + enum_val[0] = 13; H5.H5Tenum_insert(filetype_id, "ORANGE", enum_val); - enum_val[0]=14; + enum_val[0] = 14; H5.H5Tenum_insert(filetype_id, "YELLOW", enum_val); // Query member number and member index by member name, for enumeration type. @@ -308,14 +351,19 @@ public class TestH5T { } finally { if (filetype_id >= 0) - try {H5.H5Tclose(filetype_id);} catch (Exception ex) {} + try { + H5.H5Tclose(filetype_id); + } + catch (Exception ex) { + } } } @Test - public void testH5Topaque_functions() { - long filetype_id = HDF5Constants.H5I_INVALID_HID; - String opaque_name = null; + public void testH5Topaque_functions() + { + long filetype_id = HDF5Constants.H5I_INVALID_HID; + String opaque_name = null; // Create a opaque datatype try { @@ -330,7 +378,7 @@ public class TestH5T { try { H5.H5Tset_tag(filetype_id, "opaque type"); opaque_name = H5.H5Tget_tag(filetype_id); - assertTrue("Incorrect tag for opaque type", opaque_name.compareTo("opaque type")==0); + assertTrue("Incorrect tag for opaque type", opaque_name.compareTo("opaque type") == 0); } catch (Throwable err) { err.printStackTrace(); @@ -338,67 +386,83 @@ public class TestH5T { } finally { if (filetype_id >= 0) - try {H5.H5Tclose(filetype_id);} catch (Exception ex) {} + try { + H5.H5Tclose(filetype_id); + } + catch (Exception ex) { + } } } @Test - public void testH5Tvlen_create() { + public void testH5Tvlen_create() + { long filetype_id = HDF5Constants.H5I_INVALID_HID; - try { - filetype_id = H5.H5Tvlen_create(HDF5Constants.H5T_C_S1); - assertTrue("testH5Tvlen_create", filetype_id >= 0); - - // Check if datatype is VL type - int vlclass = H5.H5Tget_class(filetype_id); - assertTrue("testH5Tvlen_create:H5Tget_class", vlclass == HDF5Constants.H5T_VLEN); - assertFalse("testH5Tis_variable_str:H5Tget_class", vlclass == HDF5Constants.H5T_STRING); - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Tvlen_create.H5Tvlen_create " + err); - } - finally { - if (filetype_id >= 0) - try {H5.H5Tclose(filetype_id);} catch (Exception ex) {} - } + try { + filetype_id = H5.H5Tvlen_create(HDF5Constants.H5T_C_S1); + assertTrue("testH5Tvlen_create", filetype_id >= 0); + + // Check if datatype is VL type + int vlclass = H5.H5Tget_class(filetype_id); + assertTrue("testH5Tvlen_create:H5Tget_class", vlclass == HDF5Constants.H5T_VLEN); + assertFalse("testH5Tis_variable_str:H5Tget_class", vlclass == HDF5Constants.H5T_STRING); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tvlen_create.H5Tvlen_create " + err); + } + finally { + if (filetype_id >= 0) + try { + H5.H5Tclose(filetype_id); + } + catch (Exception ex) { + } + } } @Test - public void testH5Tis_variable_str() { - long filetype_id = HDF5Constants.H5I_INVALID_HID; - - try { - filetype_id = H5.H5Tcopy(HDF5Constants.H5T_C_S1); - assertTrue("testH5Tis_variable_str.H5Tcopy: ", filetype_id >= 0); - - // Convert to variable-length string - H5.H5Tset_size(filetype_id, HDF5Constants.H5T_VARIABLE); - - // Check if datatype is VL string - int vlclass = H5.H5Tget_class(filetype_id); - assertTrue("testH5Tis_variable_str:H5Tget_class", vlclass == HDF5Constants.H5T_STRING); - assertFalse("testH5Tvlen_create:H5Tget_class", vlclass == HDF5Constants.H5T_VLEN); - - assertTrue("testH5Tis_variable_str:H5Tis_variable_str", H5.H5Tis_variable_str(filetype_id)); - - // Verify that the class detects as a string - assertTrue("testH5Tis_variable_str:H5Tdetect_class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_STRING)); - } - catch (Throwable err) { - err.printStackTrace(); - fail("testH5Tis_variable_str " + err); - } - finally { - if (filetype_id >= 0) - try {H5.H5Tclose(filetype_id);} catch (Exception ex) {} - } + public void testH5Tis_variable_str() + { + long filetype_id = HDF5Constants.H5I_INVALID_HID; + + try { + filetype_id = H5.H5Tcopy(HDF5Constants.H5T_C_S1); + assertTrue("testH5Tis_variable_str.H5Tcopy: ", filetype_id >= 0); + + // Convert to variable-length string + H5.H5Tset_size(filetype_id, HDF5Constants.H5T_VARIABLE); + + // Check if datatype is VL string + int vlclass = H5.H5Tget_class(filetype_id); + assertTrue("testH5Tis_variable_str:H5Tget_class", vlclass == HDF5Constants.H5T_STRING); + assertFalse("testH5Tvlen_create:H5Tget_class", vlclass == HDF5Constants.H5T_VLEN); + + assertTrue("testH5Tis_variable_str:H5Tis_variable_str", H5.H5Tis_variable_str(filetype_id)); + + // Verify that the class detects as a string + assertTrue("testH5Tis_variable_str:H5Tdetect_class", + H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_STRING)); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5Tis_variable_str " + err); + } + finally { + if (filetype_id >= 0) + try { + H5.H5Tclose(filetype_id); + } + catch (Exception ex) { + } + } } @Test - public void testH5Tcompound_functions() { - long filetype_id = HDF5Constants.H5I_INVALID_HID; + public void testH5Tcompound_functions() + { + long filetype_id = HDF5Constants.H5I_INVALID_HID; // Create a compound datatype try { @@ -420,28 +484,34 @@ public class TestH5T { // We started to support this function for compound type in 1.8.6 release. int order = H5.H5Tget_order(filetype_id); assertFalse("Can't get order for compound type.", order == HDF5Constants.H5T_ORDER_ERROR); - assertTrue("Wrong order for this type.", (order == HDF5Constants.H5T_ORDER_LE) || (order == HDF5Constants.H5T_ORDER_BE)); + assertTrue("Wrong order for this type.", + (order == HDF5Constants.H5T_ORDER_LE) || (order == HDF5Constants.H5T_ORDER_BE)); // Make certain that the correct classes can be detected - assertTrue("Can't get correct class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_COMPOUND)); + assertTrue("Can't get correct class", + H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_COMPOUND)); assertTrue("Can't get correct class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_FLOAT)); // Make certain that an incorrect class is not detected assertFalse("Can get incorrect class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_TIME)); // Query member name by member index - String index_name = H5.H5Tget_member_name (filetype_id, 0); - assertTrue("Incorrect name for member index", index_name.compareTo("Lon")==0); + String index_name = H5.H5Tget_member_name(filetype_id, 0); + assertTrue("Incorrect name for member index", index_name.compareTo("Lon") == 0); // Query member offset by member no - long index_offset = H5.H5Tget_member_offset (filetype_id, 1); + long index_offset = H5.H5Tget_member_offset(filetype_id, 1); assertTrue("Incorrect offset for member no", index_offset == 8); // Query member type by member index - long index_type = H5.H5Tget_member_type (filetype_id, 0); - assertTrue("Incorrect type for member index", H5.H5Tequal(HDF5Constants.H5T_NATIVE_DOUBLE, index_type)); + long index_type = H5.H5Tget_member_type(filetype_id, 0); + assertTrue("Incorrect type for member index", + H5.H5Tequal(HDF5Constants.H5T_NATIVE_DOUBLE, index_type)); if (index_type >= 0) - try {H5.H5Tclose(index_type);} catch (Exception ex) {} - + try { + H5.H5Tclose(index_type); + } + catch (Exception ex) { + } } catch (Throwable err) { err.printStackTrace(); @@ -449,8 +519,11 @@ public class TestH5T { } finally { if (filetype_id >= 0) - try {H5.H5Tclose(filetype_id);} catch (Exception ex) {} + try { + H5.H5Tclose(filetype_id); + } + catch (Exception ex) { + } } } - } |