diff options
Diffstat (limited to 'java/test')
| -rw-r--r-- | java/test/TestH5A.java | 259 | ||||
| -rw-r--r-- | java/test/TestH5D.java | 221 | ||||
| -rw-r--r-- | java/test/TestH5R.java | 469 | ||||
| -rw-r--r-- | java/test/testfiles/JUnit-TestH5A.txt | 3 | ||||
| -rw-r--r-- | java/test/testfiles/JUnit-TestH5D.txt | 5 | ||||
| -rw-r--r-- | java/test/testfiles/JUnit-TestH5R.txt | 4 |
6 files changed, 930 insertions, 31 deletions
diff --git a/java/test/TestH5A.java b/java/test/TestH5A.java index 113196a..52731b3 100644 --- a/java/test/TestH5A.java +++ b/java/test/TestH5A.java @@ -20,6 +20,8 @@ import static org.junit.Assert.fail; import java.io.File; import java.util.ArrayList; +import java.util.Arrays; +import java.util.List; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; @@ -249,9 +251,8 @@ public class TestH5A { // Opening the existing attribute, obj_name(Created by H5ACreate2) // by index, attached to an object identifier. - attribute_id = - H5.H5Aopen_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, - HDF5Constants.H5P_DEFAULT, lapl_id); + attribute_id = H5.H5Aopen_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER, + HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT, lapl_id); assertTrue("testH5Aopen_by_idx: H5Aopen_by_idx", attribute_id >= 0); @@ -313,9 +314,9 @@ public class TestH5A { boolean bool_val = false; try { - attribute_id = - H5.H5Acreate_by_name(H5fid, obj_name, attr_name, type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, lapl_id); + attribute_id = H5.H5Acreate_by_name(H5fid, obj_name, attr_name, type_id, space_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, + lapl_id); assertTrue("testH5Acreate_by_name: H5Acreate_by_name", attribute_id >= 0); // Check if the name of attribute attached to the object specified @@ -433,9 +434,9 @@ public class TestH5A { long attribute_id = HDF5Constants.H5I_INVALID_HID; try { - attribute_id = - H5.H5Acreate_by_name(H5fid, obj_name, attr_name, type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT, lapl_id); + attribute_id = H5.H5Acreate_by_name(H5fid, obj_name, attr_name, type_id, space_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, + lapl_id); assertTrue("testH5Aget_name: H5Acreate_by_name ", attribute_id > 0); ret_name = H5.H5Aget_name(attribute_id); assertEquals(ret_name, attr_name); @@ -539,7 +540,7 @@ public class TestH5A { try { attr_id = H5.H5Acreate(H5did, "dset", type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT); + HDF5Constants.H5P_DEFAULT); attribute_id = H5.H5Aopen(H5did, "dset", HDF5Constants.H5P_DEFAULT); // Calling H5Aget_info with attribute_id returned from H5Aopen. attr_info = H5.H5Aget_info(attribute_id); @@ -580,7 +581,7 @@ public class TestH5A { try { attr_id = H5.H5Acreate(H5did, ".", type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT); + HDF5Constants.H5P_DEFAULT); attribute_id = H5.H5Aopen_by_idx(H5did, ".", HDF5Constants.H5_INDEX_CRT_ORDER, order, 0, HDF5Constants.H5P_DEFAULT, lapl_id); // Calling H5Aget_info with attribute_id returned from @@ -623,7 +624,7 @@ public class TestH5A { try { attr_id = H5.H5Acreate(H5did, "dset1", type_id, space_id, HDF5Constants.H5P_DEFAULT, - HDF5Constants.H5P_DEFAULT); + HDF5Constants.H5P_DEFAULT); attr2_id = H5.H5Acreate(H5did, "dataset2", type_id, space_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); @@ -700,7 +701,7 @@ public class TestH5A { try { attr_id = H5.H5Acreate_by_name(H5fid, obj_name, attr_name, type_id, space_id, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); attr_info = H5.H5Aget_info_by_name(H5fid, obj_name, attr_name, lapl_id); assertNotNull(attr_info); } @@ -1064,7 +1065,7 @@ public class TestH5A { HDF5Constants.H5P_DEFAULT); assertTrue("testH5Awrite_readVL: ", attr_id >= 0); - H5.H5AwriteVL(attr_id, atype_id, str_data); + H5.H5Awrite_VLStrings(attr_id, atype_id, str_data); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); @@ -1076,7 +1077,7 @@ public class TestH5A { strs[j] = ""; } try { - H5.H5AreadVL(attr_id, atype_id, strs); + H5.H5Aread_VLStrings(attr_id, atype_id, strs); } catch (Exception ex) { ex.printStackTrace(); @@ -1151,12 +1152,12 @@ public class TestH5A { fail("H5.H5Acreate: " + err); } - /* Close the property list, and get the attribute's property list */ + // Close the property list, and get the attribute's property list H5.H5Pclose(plist_id); plist_id = H5.H5Aget_create_plist(attribute_id); assertTrue(plist_id > 0); - /* Get the character encoding and ensure that it is the default (ASCII) */ + // Get the character encoding and ensure that it is the default (ASCII) try { char_encoding = H5.H5Pget_char_encoding(plist_id); } @@ -1213,13 +1214,13 @@ public class TestH5A { } try { attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1", type_id, space_id, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); attr2_id = H5.H5Acreate_by_name(H5fid, ".", "attribute2", type_id, space_id, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); attr3_id = H5.H5Acreate_by_name(H5fid, ".", "attribute3", type_id, space_id, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); attr4_id = H5.H5Acreate_by_name(H5fid, ".", "attribute4", type_id, space_id, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); H5A_iterate_cb iter_cb = new H5A_iter_callback(); try { H5.H5Aiterate(H5fid, HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0L, iter_cb, @@ -1306,13 +1307,13 @@ public class TestH5A { } try { attr1_id = H5.H5Acreate_by_name(H5fid, ".", "attribute4", type_id, space_id, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); attr2_id = H5.H5Acreate_by_name(H5fid, ".", "attribute3", type_id, space_id, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); attr3_id = H5.H5Acreate_by_name(H5fid, ".", "attribute2", type_id, space_id, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); attr4_id = H5.H5Acreate_by_name(H5fid, ".", "attribute1", type_id, space_id, - HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, lapl_id); H5A_iterate_cb iter_cb = new H5A_iter_callback(); try { H5.H5Aiterate_by_name(H5fid, ".", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0L, @@ -1360,4 +1361,212 @@ public class TestH5A { } } } + + @Test + public void testH5AVLwr() + { + String attr_int_name = "VLIntdata"; + String attr_dbl_name = "VLDbldata"; + long attr_int_id = HDF5Constants.H5I_INVALID_HID; + long attr_dbl_id = HDF5Constants.H5I_INVALID_HID; + long atype_int_id = HDF5Constants.H5I_INVALID_HID; + long atype_dbl_id = HDF5Constants.H5I_INVALID_HID; + long aspace_id = HDF5Constants.H5I_INVALID_HID; + long[] dims = {4}; + long lsize = 1; + + ArrayList[] vl_int_data = new ArrayList[4]; + ArrayList[] vl_dbl_data = new ArrayList[4]; + try { + // Write Integer data + vl_int_data[0] = new ArrayList<Integer>(Arrays.asList(1)); + vl_int_data[1] = new ArrayList<Integer>(Arrays.asList(2, 3)); + vl_int_data[2] = new ArrayList<Integer>(Arrays.asList(4, 5, 6)); + vl_int_data[3] = new ArrayList<Integer>(Arrays.asList(7, 8, 9, 10)); + Class dataClass = vl_int_data.getClass(); + assertTrue("testH5AVLwr.getClass: " + dataClass, dataClass.isArray()); + + try { + atype_int_id = H5.H5Tvlen_create(HDF5Constants.H5T_STD_U32LE); + assertTrue("testH5AVLwr.H5Tvlen_create: ", atype_int_id >= 0); + } + catch (Exception err) { + if (atype_int_id > 0) + try { + H5.H5Tclose(atype_int_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5AVLwr: " + err); + } + + try { + aspace_id = H5.H5Screate_simple(1, dims, null); + assertTrue(aspace_id > 0); + attr_int_id = H5.H5Acreate(H5did, attr_int_name, atype_int_id, aspace_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + assertTrue("testH5AVLwr: ", attr_int_id >= 0); + + H5.H5AwriteVL(attr_int_id, atype_int_id, vl_int_data); + } + catch (Exception err) { + if (attr_int_id > 0) + try { + H5.H5Aclose(attr_int_id); + } + catch (Exception ex) { + } + if (atype_int_id > 0) + try { + H5.H5Tclose(atype_int_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5AVLwr: " + err); + } + finally { + if (aspace_id > 0) + try { + H5.H5Sclose(aspace_id); + } + catch (Exception ex) { + } + } + + // Write Double data + vl_dbl_data[0] = new ArrayList<Double>(Arrays.asList(1.1)); + vl_dbl_data[1] = new ArrayList<Double>(Arrays.asList(2.2, 3.3)); + vl_dbl_data[2] = new ArrayList<Double>(Arrays.asList(4.4, 5.5, 6.6)); + vl_dbl_data[3] = new ArrayList<Double>(Arrays.asList(7.7, 8.8, 9.9, 10.0)); + dataClass = vl_dbl_data.getClass(); + assertTrue("testH5AVLwr.getClass: " + dataClass, dataClass.isArray()); + + try { + atype_dbl_id = H5.H5Tvlen_create(HDF5Constants.H5T_NATIVE_DOUBLE); + assertTrue("testH5AVLwr.H5Tvlen_create: ", atype_dbl_id >= 0); + } + catch (Exception err) { + if (atype_dbl_id > 0) + try { + H5.H5Tclose(atype_dbl_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5AVLwr: " + err); + } + + try { + aspace_id = H5.H5Screate_simple(1, dims, null); + assertTrue(aspace_id > 0); + attr_dbl_id = H5.H5Acreate(H5did, attr_dbl_name, atype_dbl_id, aspace_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + assertTrue("testH5AVLwr: ", attr_dbl_id >= 0); + + H5.H5AwriteVL(attr_dbl_id, atype_dbl_id, vl_dbl_data); + } + catch (Exception err) { + if (attr_dbl_id > 0) + try { + H5.H5Aclose(attr_dbl_id); + } + catch (Exception ex) { + } + if (atype_dbl_id > 0) + try { + H5.H5Tclose(atype_dbl_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5AVLwr: " + err); + } + finally { + if (aspace_id > 0) + try { + H5.H5Sclose(aspace_id); + } + catch (Exception ex) { + } + } + + H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); + + for (int j = 0; j < dims.length; j++) { + lsize *= dims[j]; + } + + // Read Integer data + ArrayList[] vl_readbuf = new ArrayList[4]; + for (int j = 0; j < lsize; j++) + vl_readbuf[j] = new ArrayList<Integer>(); + + try { + H5.H5AreadVL(attr_int_id, atype_int_id, vl_readbuf); + } + catch (Exception ex) { + ex.printStackTrace(); + } + assertTrue("testH5AVLwr:" + vl_readbuf[0].get(0), + vl_int_data[0].get(0).equals(vl_readbuf[0].get(0))); + assertTrue("testH5AVLwr:" + vl_readbuf[1].get(0), + vl_int_data[1].get(0).equals(vl_readbuf[1].get(0))); + assertTrue("testH5AVLwr:" + vl_readbuf[2].get(0), + vl_int_data[2].get(0).equals(vl_readbuf[2].get(0))); + assertTrue("testH5AVLwr:" + vl_readbuf[3].get(0), + vl_int_data[3].get(0).equals(vl_readbuf[3].get(0))); + + // Read Double data + vl_readbuf = new ArrayList[4]; + for (int j = 0; j < lsize; j++) + vl_readbuf[j] = new ArrayList<Double>(); + + try { + H5.H5AreadVL(attr_dbl_id, atype_dbl_id, vl_readbuf); + } + catch (Exception ex) { + ex.printStackTrace(); + } + assertTrue("testH5AVLwr:" + vl_readbuf[0].get(0), + vl_dbl_data[0].get(0).equals(vl_readbuf[0].get(0))); + assertTrue("testH5AVLwr:" + vl_readbuf[1].get(0), + vl_dbl_data[1].get(0).equals(vl_readbuf[1].get(0))); + assertTrue("testH5AVLwr:" + vl_readbuf[2].get(0), + vl_dbl_data[2].get(0).equals(vl_readbuf[2].get(0))); + assertTrue("testH5AVLwr:" + vl_readbuf[3].get(0), + vl_dbl_data[3].get(0).equals(vl_readbuf[3].get(0))); + } + catch (Throwable err) { + err.printStackTrace(); + fail("H5.testH5AVLwr: " + err); + } + finally { + if (attr_dbl_id > 0) + try { + H5.H5Aclose(attr_dbl_id); + } + catch (Exception ex) { + } + if (attr_int_id > 0) + try { + H5.H5Aclose(attr_int_id); + } + catch (Exception ex) { + } + if (atype_dbl_id > 0) + try { + H5.H5Tclose(atype_dbl_id); + } + catch (Exception ex) { + } + if (atype_int_id > 0) + try { + H5.H5Tclose(atype_int_id); + } + catch (Exception ex) { + } + } + } } diff --git a/java/test/TestH5D.java b/java/test/TestH5D.java index 4bab1a9..f7e5702 100644 --- a/java/test/TestH5D.java +++ b/java/test/TestH5D.java @@ -17,6 +17,9 @@ import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; import java.io.File; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.List; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; @@ -961,8 +964,8 @@ public class TestH5D { assertTrue("H5Dvlen_get_buf_size " + vl_size + " == " + str_data_bytes, vl_size == str_data_bytes); } - @Test(expected = IllegalArgumentException.class) - public void testH5Dvlen_read_invalid_buffer() throws Throwable + @Test + public void testH5Dvlen_read_default_buffer() throws Throwable { String[] str_data = {"Parting", "is such", "sweet", "sorrow.", "Testing", "one", "two", "three.", "Dog,", "man's", "best", "friend.", "Diamonds", "are", "a", "girls!", @@ -1013,4 +1016,218 @@ public class TestH5D { assertTrue("testH5Dvlen_write_read " + str_wdata[v] + " == " + str_rdata[v], str_wdata[v] == str_wdata[v]); } + + @Test + public void testH5DVLwr() + { + String dset_int_name = "VLIntdata"; + String dset_dbl_name = "VLDbldata"; + long dset_int_id = HDF5Constants.H5I_INVALID_HID; + long dset_dbl_id = HDF5Constants.H5I_INVALID_HID; + long dtype_int_id = HDF5Constants.H5I_INVALID_HID; + long dtype_dbl_id = HDF5Constants.H5I_INVALID_HID; + long dspace_id = HDF5Constants.H5I_INVALID_HID; + long[] dims = {4}; + long lsize = 1; + + ArrayList[] vl_int_data = new ArrayList[4]; + ArrayList[] vl_dbl_data = new ArrayList[4]; + try { + // Write Integer data + vl_int_data[0] = new ArrayList<Integer>(Arrays.asList(1)); + vl_int_data[1] = new ArrayList<Integer>(Arrays.asList(2, 3)); + vl_int_data[2] = new ArrayList<Integer>(Arrays.asList(4, 5, 6)); + vl_int_data[3] = new ArrayList<Integer>(Arrays.asList(7, 8, 9, 10)); + Class dataClass = vl_int_data.getClass(); + assertTrue("testH5DVLwr.getClass: " + dataClass, dataClass.isArray()); + + try { + dtype_int_id = H5.H5Tvlen_create(HDF5Constants.H5T_STD_U32LE); + assertTrue("testH5DVLwr.H5Tvlen_create: ", dtype_int_id >= 0); + } + catch (Exception err) { + if (dtype_int_id > 0) + try { + H5.H5Tclose(dtype_int_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5DVLwr: " + err); + } + + try { + dspace_id = H5.H5Screate_simple(1, dims, null); + assertTrue(dspace_id > 0); + dset_int_id = + H5.H5Dcreate(H5fid, dset_int_name, dtype_int_id, dspace_id, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + assertTrue("testH5DVLwr: ", dset_int_id >= 0); + + H5.H5DwriteVL(dset_int_id, dtype_int_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, vl_int_data); + } + catch (Exception err) { + if (dset_int_id > 0) + try { + H5.H5Dclose(dset_int_id); + } + catch (Exception ex) { + } + if (dtype_int_id > 0) + try { + H5.H5Tclose(dtype_int_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5DVLwr: " + err); + } + finally { + if (dspace_id > 0) + try { + H5.H5Sclose(dspace_id); + } + catch (Exception ex) { + } + } + + // Write Double data + vl_dbl_data[0] = new ArrayList<Double>(Arrays.asList(1.1)); + vl_dbl_data[1] = new ArrayList<Double>(Arrays.asList(2.2, 3.3)); + vl_dbl_data[2] = new ArrayList<Double>(Arrays.asList(4.4, 5.5, 6.6)); + vl_dbl_data[3] = new ArrayList<Double>(Arrays.asList(7.7, 8.8, 9.9, 10.0)); + dataClass = vl_dbl_data.getClass(); + assertTrue("testH5DVLwr.getClass: " + dataClass, dataClass.isArray()); + + try { + dtype_dbl_id = H5.H5Tvlen_create(HDF5Constants.H5T_NATIVE_DOUBLE); + assertTrue("testH5DVLwr.H5Tvlen_create: ", dtype_dbl_id >= 0); + } + catch (Exception err) { + if (dtype_dbl_id > 0) + try { + H5.H5Tclose(dtype_dbl_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5DVLwr: " + err); + } + + try { + dspace_id = H5.H5Screate_simple(1, dims, null); + assertTrue(dspace_id > 0); + dset_dbl_id = + H5.H5Dcreate(H5fid, dset_dbl_name, dtype_dbl_id, dspace_id, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + assertTrue("testH5DVLwr: ", dset_dbl_id >= 0); + + H5.H5DwriteVL(dset_dbl_id, dtype_dbl_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, vl_dbl_data); + } + catch (Exception err) { + if (dset_dbl_id > 0) + try { + H5.H5Dclose(dset_dbl_id); + } + catch (Exception ex) { + } + if (dtype_dbl_id > 0) + try { + H5.H5Tclose(dtype_dbl_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5DVLwr: " + err); + } + finally { + if (dspace_id > 0) + try { + H5.H5Sclose(dspace_id); + } + catch (Exception ex) { + } + } + + H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); + + for (int j = 0; j < dims.length; j++) { + lsize *= dims[j]; + } + + // Read Integer data + ArrayList[] vl_readbuf = new ArrayList[4]; + for (int j = 0; j < lsize; j++) + vl_readbuf[j] = new ArrayList<Integer>(); + + try { + H5.H5DreadVL(dset_int_id, dtype_int_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, vl_readbuf); + } + catch (Exception ex) { + ex.printStackTrace(); + } + assertTrue("testH5DVLwr:" + vl_readbuf[0].get(0), + vl_int_data[0].get(0).equals(vl_readbuf[0].get(0))); + assertTrue("testH5DVLwr:" + vl_readbuf[1].get(0), + vl_int_data[1].get(0).equals(vl_readbuf[1].get(0))); + assertTrue("testH5DVLwr:" + vl_readbuf[2].get(0), + vl_int_data[2].get(0).equals(vl_readbuf[2].get(0))); + assertTrue("testH5DVLwr:" + vl_readbuf[3].get(0), + vl_int_data[3].get(0).equals(vl_readbuf[3].get(0))); + + // Read Double data + vl_readbuf = new ArrayList[4]; + for (int j = 0; j < lsize; j++) + vl_readbuf[j] = new ArrayList<Double>(); + + try { + H5.H5DreadVL(dset_dbl_id, dtype_dbl_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, vl_readbuf); + } + catch (Exception ex) { + ex.printStackTrace(); + } + assertTrue("testH5DVLwr:" + vl_readbuf[0].get(0), + vl_dbl_data[0].get(0).equals(vl_readbuf[0].get(0))); + assertTrue("testH5DVLwr:" + vl_readbuf[1].get(0), + vl_dbl_data[1].get(0).equals(vl_readbuf[1].get(0))); + assertTrue("testH5DVLwr:" + vl_readbuf[2].get(0), + vl_dbl_data[2].get(0).equals(vl_readbuf[2].get(0))); + assertTrue("testH5DVLwr:" + vl_readbuf[3].get(0), + vl_dbl_data[3].get(0).equals(vl_readbuf[3].get(0))); + } + catch (Throwable err) { + err.printStackTrace(); + fail("H5.testH5DVLwr: " + err); + } + finally { + if (dset_dbl_id > 0) + try { + H5.H5Dclose(dset_dbl_id); + } + catch (Exception ex) { + } + if (dset_int_id > 0) + try { + H5.H5Dclose(dset_int_id); + } + catch (Exception ex) { + } + if (dtype_dbl_id > 0) + try { + H5.H5Tclose(dtype_dbl_id); + } + catch (Exception ex) { + } + if (dtype_int_id > 0) + try { + H5.H5Tclose(dtype_int_id); + } + catch (Exception ex) { + } + } + } } diff --git a/java/test/TestH5R.java b/java/test/TestH5R.java index a8e7387..54ff9c2 100644 --- a/java/test/TestH5R.java +++ b/java/test/TestH5R.java @@ -19,6 +19,9 @@ import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; import java.io.File; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.List; import hdf.hdf5lib.H5; import hdf.hdf5lib.HDF5Constants; @@ -407,4 +410,470 @@ public class TestH5R { ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1); H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref1); } + + @Test + public void testH5RVLattr_ref() + { + String attr_obj_name = "VLObjRefdata"; + String attr_reg_name = "VLRegRefdata"; + long attr_obj_id = HDF5Constants.H5I_INVALID_HID; + long attr_reg_id = HDF5Constants.H5I_INVALID_HID; + long atype_obj_id = HDF5Constants.H5I_INVALID_HID; + long atype_reg_id = HDF5Constants.H5I_INVALID_HID; + long aspace_id = HDF5Constants.H5I_INVALID_HID; + long[] dims = {4}; + long lsize = 1; + byte[] ref1 = null; + byte[] ref2 = null; + byte[] ref3 = null; + byte[] ref4 = null; + + try { + // Create reference on dataset + ref1 = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid); + assertNotNull(ref1); + ref2 = H5.H5Rcreate(H5gid, "dset2", HDF5Constants.H5R_DATASET_REGION, H5dsid); + assertNotNull(ref2); + ref3 = H5.H5Rcreate(H5gid, "/dset", HDF5Constants.H5R_OBJECT, -1); + assertNotNull(ref3); + + // Create reference on group + ref4 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1); + assertNotNull(ref3); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5RVLattr_ref: " + err); + } + + ArrayList[] vl_obj_data = new ArrayList[4]; + ArrayList[] vl_reg_data = new ArrayList[4]; + try { + // Write Object Reference data + vl_obj_data[0] = new ArrayList<byte[]>(Arrays.asList(ref3)); + vl_obj_data[1] = new ArrayList<byte[]>(Arrays.asList(ref3, ref4)); + vl_obj_data[2] = new ArrayList<byte[]>(Arrays.asList(ref3, ref3, ref3)); + vl_obj_data[3] = new ArrayList<byte[]>(Arrays.asList(ref4, ref4, ref4, ref4)); + Class dataClass = vl_obj_data.getClass(); + assertTrue("testH5RVLattr_ref.getClass: " + dataClass, dataClass.isArray()); + + try { + atype_obj_id = H5.H5Tvlen_create(HDF5Constants.H5T_STD_REF_OBJ); + assertTrue("testH5RVLattr_ref.H5Tvlen_create: ", atype_obj_id >= 0); + } + catch (Exception err) { + if (atype_obj_id > 0) + try { + H5.H5Tclose(atype_obj_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5RVLattr_ref: " + err); + } + + try { + aspace_id = H5.H5Screate_simple(1, dims, null); + assertTrue(aspace_id > 0); + attr_obj_id = H5.H5Acreate(H5did, attr_obj_name, atype_obj_id, aspace_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + assertTrue("testH5RVLattr_ref: ", attr_obj_id >= 0); + + H5.H5AwriteVL(attr_obj_id, atype_obj_id, vl_obj_data); + } + catch (Exception err) { + if (attr_obj_id > 0) + try { + H5.H5Aclose(attr_obj_id); + } + catch (Exception ex) { + } + if (atype_obj_id > 0) + try { + H5.H5Tclose(atype_obj_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5RVLattr_ref: " + err); + } + finally { + if (aspace_id > 0) + try { + H5.H5Sclose(aspace_id); + } + catch (Exception ex) { + } + } + + // Write Region Reference data + vl_reg_data[0] = new ArrayList<byte[]>(Arrays.asList(ref1)); + vl_reg_data[1] = new ArrayList<byte[]>(Arrays.asList(ref1, ref2)); + vl_reg_data[2] = new ArrayList<byte[]>(Arrays.asList(ref1, ref1, ref1)); + vl_reg_data[3] = new ArrayList<byte[]>(Arrays.asList(ref2, ref2, ref2, ref2)); + dataClass = vl_reg_data.getClass(); + assertTrue("testH5RVLattr_ref.getClass: " + dataClass, dataClass.isArray()); + + try { + atype_reg_id = H5.H5Tvlen_create(HDF5Constants.H5T_STD_REF_DSETREG); + assertTrue("testH5RVLattr_ref.H5Tvlen_create: ", atype_reg_id >= 0); + } + catch (Exception err) { + if (atype_reg_id > 0) + try { + H5.H5Tclose(atype_reg_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5RVLattr_ref: " + err); + } + + try { + aspace_id = H5.H5Screate_simple(1, dims, null); + assertTrue(aspace_id > 0); + attr_reg_id = H5.H5Acreate(H5did, attr_reg_name, atype_reg_id, aspace_id, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + assertTrue("testH5RVLattr_ref: ", attr_reg_id >= 0); + + H5.H5AwriteVL(attr_reg_id, atype_reg_id, vl_reg_data); + } + catch (Exception err) { + if (attr_reg_id > 0) + try { + H5.H5Aclose(attr_reg_id); + } + catch (Exception ex) { + } + if (atype_reg_id > 0) + try { + H5.H5Tclose(atype_reg_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5RVLattr_ref: " + err); + } + finally { + if (aspace_id > 0) + try { + H5.H5Sclose(aspace_id); + } + catch (Exception ex) { + } + } + + H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); + + for (int j = 0; j < dims.length; j++) { + lsize *= dims[j]; + } + + // Read Object Reference data + ArrayList[] vl_readbuf = new ArrayList[4]; + for (int j = 0; j < lsize; j++) + vl_readbuf[j] = new ArrayList<byte[]>(); + + try { + H5.H5AreadVL(attr_obj_id, atype_obj_id, vl_readbuf); + } + catch (Exception ex) { + ex.printStackTrace(); + } + assertTrue("testH5RVLattr_ref:" + ((byte[])vl_readbuf[0].get(0))[0], + ((byte[])vl_obj_data[0].get(0))[0] == ((byte[])vl_readbuf[0].get(0))[0]); + assertTrue("testH5RVLattr_ref:" + ((byte[])vl_readbuf[1].get(0))[0], + ((byte[])vl_obj_data[1].get(0))[0] == ((byte[])vl_readbuf[1].get(0))[0]); + assertTrue("testH5RVLattr_ref:" + ((byte[])vl_readbuf[2].get(0))[0], + ((byte[])vl_obj_data[2].get(0))[0] == ((byte[])vl_readbuf[2].get(0))[0]); + assertTrue("testH5RVLattr_ref:" + ((byte[])vl_readbuf[3].get(0))[0], + ((byte[])vl_obj_data[3].get(0))[0] == ((byte[])vl_readbuf[3].get(0))[0]); + + // Read Region Reference data + vl_readbuf = new ArrayList[4]; + for (int j = 0; j < lsize; j++) + vl_readbuf[j] = new ArrayList<byte[]>(); + + try { + H5.H5AreadVL(attr_reg_id, atype_reg_id, vl_readbuf); + } + catch (Exception ex) { + ex.printStackTrace(); + } + assertTrue("testH5RVLattr_ref:" + ((byte[])vl_readbuf[0].get(0))[0], + ((byte[])vl_reg_data[0].get(0))[0] == ((byte[])vl_readbuf[0].get(0))[0]); + assertTrue("testH5RVLattr_ref:" + ((byte[])vl_readbuf[1].get(0))[0], + ((byte[])vl_reg_data[1].get(0))[0] == ((byte[])vl_readbuf[1].get(0))[0]); + assertTrue("testH5RVLattr_ref:" + ((byte[])vl_readbuf[2].get(0))[0], + ((byte[])vl_reg_data[2].get(0))[0] == ((byte[])vl_readbuf[2].get(0))[0]); + assertTrue("testH5RVLattr_ref:" + ((byte[])vl_readbuf[3].get(0))[0], + ((byte[])vl_reg_data[3].get(0))[0] == ((byte[])vl_readbuf[3].get(0))[0]); + } + catch (Throwable err) { + err.printStackTrace(); + fail("H5.testH5RVLattr_ref: " + err); + } + finally { + if (attr_reg_id > 0) + try { + H5.H5Aclose(attr_reg_id); + } + catch (Exception ex) { + } + if (attr_obj_id > 0) + try { + H5.H5Aclose(attr_obj_id); + } + catch (Exception ex) { + } + if (atype_reg_id > 0) + try { + H5.H5Tclose(atype_reg_id); + } + catch (Exception ex) { + } + if (atype_obj_id > 0) + try { + H5.H5Tclose(atype_obj_id); + } + catch (Exception ex) { + } + } + } + + @Test + public void testH5RVLdset_ref() + { + String dset_obj_name = "VLObjRefdata"; + String dset_reg_name = "VLRegRefdata"; + long dset_obj_id = HDF5Constants.H5I_INVALID_HID; + long dset_reg_id = HDF5Constants.H5I_INVALID_HID; + long dtype_obj_id = HDF5Constants.H5I_INVALID_HID; + long dtype_reg_id = HDF5Constants.H5I_INVALID_HID; + long dspace_id = HDF5Constants.H5I_INVALID_HID; + long[] dims = {4}; + long lsize = 1; + byte[] ref1 = null; + byte[] ref2 = null; + byte[] ref3 = null; + byte[] ref4 = null; + + try { + // Create reference on dataset + ref1 = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid); + assertNotNull(ref1); + ref2 = H5.H5Rcreate(H5gid, "dset2", HDF5Constants.H5R_DATASET_REGION, H5dsid); + assertNotNull(ref2); + ref3 = H5.H5Rcreate(H5gid, "/dset", HDF5Constants.H5R_OBJECT, -1); + assertNotNull(ref3); + + // Create reference on group + ref4 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1); + assertNotNull(ref3); + } + catch (Throwable err) { + err.printStackTrace(); + fail("testH5RVLattr_ref: " + err); + } + + ArrayList[] vl_obj_data = new ArrayList[4]; + ArrayList[] vl_reg_data = new ArrayList[4]; + try { + // Write Object Reference data + vl_obj_data[0] = new ArrayList<byte[]>(Arrays.asList(ref3)); + vl_obj_data[1] = new ArrayList<byte[]>(Arrays.asList(ref3, ref4)); + vl_obj_data[2] = new ArrayList<byte[]>(Arrays.asList(ref3, ref3, ref3)); + vl_obj_data[3] = new ArrayList<byte[]>(Arrays.asList(ref4, ref4, ref4, ref4)); + Class dataClass = vl_obj_data.getClass(); + assertTrue("testH5RVLdset_ref.getClass: " + dataClass, dataClass.isArray()); + + try { + dtype_obj_id = H5.H5Tvlen_create(HDF5Constants.H5T_STD_REF_OBJ); + assertTrue("testH5RVLdset_ref.H5Tvlen_create: ", dtype_obj_id >= 0); + } + catch (Exception err) { + if (dtype_obj_id > 0) + try { + H5.H5Tclose(dtype_obj_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5RVLdset_ref: " + err); + } + + try { + dspace_id = H5.H5Screate_simple(1, dims, null); + assertTrue(dspace_id > 0); + dset_obj_id = + H5.H5Dcreate(H5fid, dset_obj_name, dtype_obj_id, dspace_id, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + assertTrue("testH5RVLdset_ref: ", dset_obj_id >= 0); + + H5.H5DwriteVL(dset_obj_id, dtype_obj_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, vl_obj_data); + } + catch (Exception err) { + if (dset_obj_id > 0) + try { + H5.H5Dclose(dset_obj_id); + } + catch (Exception ex) { + } + if (dtype_obj_id > 0) + try { + H5.H5Tclose(dtype_obj_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5RVLdset_ref: " + err); + } + finally { + if (dspace_id > 0) + try { + H5.H5Sclose(dspace_id); + } + catch (Exception ex) { + } + } + + // Write Region Reference data + vl_reg_data[0] = new ArrayList<byte[]>(Arrays.asList(ref1)); + vl_reg_data[1] = new ArrayList<byte[]>(Arrays.asList(ref1, ref2)); + vl_reg_data[2] = new ArrayList<byte[]>(Arrays.asList(ref1, ref1, ref1)); + vl_reg_data[3] = new ArrayList<byte[]>(Arrays.asList(ref2, ref2, ref2, ref2)); + dataClass = vl_reg_data.getClass(); + assertTrue("testH5RVLdset_ref.getClass: " + dataClass, dataClass.isArray()); + + try { + dtype_reg_id = H5.H5Tvlen_create(HDF5Constants.H5T_STD_REF_DSETREG); + assertTrue("testH5RVLdset_ref.H5Tvlen_create: ", dtype_reg_id >= 0); + } + catch (Exception err) { + if (dtype_reg_id > 0) + try { + H5.H5Tclose(dtype_reg_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5RVLdset_ref: " + err); + } + + try { + dspace_id = H5.H5Screate_simple(1, dims, null); + assertTrue(dspace_id > 0); + dset_reg_id = + H5.H5Dcreate(H5fid, dset_reg_name, dtype_reg_id, dspace_id, HDF5Constants.H5P_DEFAULT, + HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); + assertTrue("testH5RVLdset_ref: ", dset_reg_id >= 0); + + H5.H5DwriteVL(dset_reg_id, dtype_reg_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, vl_reg_data); + } + catch (Exception err) { + if (dset_reg_id > 0) + try { + H5.H5Dclose(dset_reg_id); + } + catch (Exception ex) { + } + if (dtype_reg_id > 0) + try { + H5.H5Tclose(dtype_reg_id); + } + catch (Exception ex) { + } + err.printStackTrace(); + fail("H5.testH5RVLdset_ref: " + err); + } + finally { + if (dspace_id > 0) + try { + H5.H5Sclose(dspace_id); + } + catch (Exception ex) { + } + } + + H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); + + for (int j = 0; j < dims.length; j++) { + lsize *= dims[j]; + } + + // Read Object Reference data + ArrayList[] vl_readbuf = new ArrayList[4]; + for (int j = 0; j < lsize; j++) + vl_readbuf[j] = new ArrayList<byte[]>(); + + try { + H5.H5DreadVL(dset_obj_id, dtype_obj_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, vl_readbuf); + } + catch (Exception ex) { + ex.printStackTrace(); + } + assertTrue("testH5RVLdset_ref:" + ((byte[])vl_readbuf[0].get(0))[0], + ((byte[])vl_obj_data[0].get(0))[0] == ((byte[])vl_readbuf[0].get(0))[0]); + assertTrue("testH5RVLdset_ref:" + ((byte[])vl_readbuf[1].get(0))[0], + ((byte[])vl_obj_data[1].get(0))[0] == ((byte[])vl_readbuf[1].get(0))[0]); + assertTrue("testH5RVLdset_ref:" + ((byte[])vl_readbuf[2].get(0))[0], + ((byte[])vl_obj_data[2].get(0))[0] == ((byte[])vl_readbuf[2].get(0))[0]); + assertTrue("testH5RVLdset_ref:" + ((byte[])vl_readbuf[3].get(0))[0], + ((byte[])vl_obj_data[3].get(0))[0] == ((byte[])vl_readbuf[3].get(0))[0]); + + // Read Region Reference data + vl_readbuf = new ArrayList[4]; + for (int j = 0; j < lsize; j++) + vl_readbuf[j] = new ArrayList<byte[]>(); + + try { + H5.H5DreadVL(dset_reg_id, dtype_reg_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, + HDF5Constants.H5P_DEFAULT, vl_readbuf); + } + catch (Exception ex) { + ex.printStackTrace(); + } + assertTrue("testH5RVLdset_ref:" + ((byte[])vl_readbuf[0].get(0))[0], + ((byte[])vl_reg_data[0].get(0))[0] == ((byte[])vl_readbuf[0].get(0))[0]); + assertTrue("testH5RVLdset_ref:" + ((byte[])vl_readbuf[1].get(0))[0], + ((byte[])vl_reg_data[1].get(0))[0] == ((byte[])vl_readbuf[1].get(0))[0]); + assertTrue("testH5RVLdset_ref:" + ((byte[])vl_readbuf[2].get(0))[0], + ((byte[])vl_reg_data[2].get(0))[0] == ((byte[])vl_readbuf[2].get(0))[0]); + assertTrue("testH5RVLdset_ref:" + ((byte[])vl_readbuf[3].get(0))[0], + ((byte[])vl_reg_data[3].get(0))[0] == ((byte[])vl_readbuf[3].get(0))[0]); + } + catch (Throwable err) { + err.printStackTrace(); + fail("H5.testH5RVLdset_ref: " + err); + } + finally { + if (dset_reg_id > 0) + try { + H5.H5Dclose(dset_reg_id); + } + catch (Exception ex) { + } + if (dset_obj_id > 0) + try { + H5.H5Dclose(dset_obj_id); + } + catch (Exception ex) { + } + if (dtype_reg_id > 0) + try { + H5.H5Tclose(dtype_reg_id); + } + catch (Exception ex) { + } + if (dtype_obj_id > 0) + try { + H5.H5Tclose(dtype_obj_id); + } + catch (Exception ex) { + } + } + } } diff --git a/java/test/testfiles/JUnit-TestH5A.txt b/java/test/testfiles/JUnit-TestH5A.txt index 2026d21..efdd4a2 100644 --- a/java/test/testfiles/JUnit-TestH5A.txt +++ b/java/test/testfiles/JUnit-TestH5A.txt @@ -6,6 +6,7 @@ JUnit version 4.11 .testH5Aiterate .testH5Aopen_by_idx .testH5Aopen_invalidname +.testH5AVLwr .testH5Aopen .testH5Aget_info_by_name .testH5Aget_create_plist @@ -30,5 +31,5 @@ JUnit version 4.11 Time: XXXX -OK (28 tests) +OK (29 tests) diff --git a/java/test/testfiles/JUnit-TestH5D.txt b/java/test/testfiles/JUnit-TestH5D.txt index 987655b..288e6d0 100644 --- a/java/test/testfiles/JUnit-TestH5D.txt +++ b/java/test/testfiles/JUnit-TestH5D.txt @@ -4,6 +4,7 @@ JUnit version 4.11 .testH5Dcreate .testH5Dget_offset .testH5Dget_type +.testH5DVLwr .testH5Dfill .testH5Dopen .testH5Dcreate_anon @@ -11,15 +12,15 @@ JUnit version 4.11 .testH5Dget_storage_size_empty .testH5Diterate .testH5Dget_access_plist -.testH5Dvlen_read_invalid_buffer .testH5Dvlen_get_buf_size .testH5Dget_space_closed .testH5Dget_space_status .testH5Dvlen_write_read .testH5Dget_space .testH5Dget_type_closed +.testH5Dvlen_read_default_buffer Time: XXXX -OK (19 tests) +OK (20 tests) diff --git a/java/test/testfiles/JUnit-TestH5R.txt b/java/test/testfiles/JUnit-TestH5R.txt index 150df54..ecdd322 100644 --- a/java/test/testfiles/JUnit-TestH5R.txt +++ b/java/test/testfiles/JUnit-TestH5R.txt @@ -2,6 +2,8 @@ JUnit version 4.11 .testH5Rgetregion_Nullreference .testH5Rget_obj_type2_Invalidreftype .testH5Rdereference +.testH5RVLdset_ref +.testH5RVLattr_ref .testH5Rget_name .testH5Rcreate_Invalidreftype .testH5Rget_name_NULLreference @@ -19,5 +21,5 @@ JUnit version 4.11 Time: XXXX -OK (17 tests) +OK (19 tests) |