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-rw-r--r--java/test/TestH5A.java145
-rw-r--r--java/test/TestH5D.java519
-rw-r--r--java/test/testfiles/JUnit-TestH5A.txt3
-rw-r--r--java/test/testfiles/JUnit-TestH5D.txt5
4 files changed, 617 insertions, 55 deletions
diff --git a/java/test/TestH5A.java b/java/test/TestH5A.java
index d17e16c..90fe24c 100644
--- a/java/test/TestH5A.java
+++ b/java/test/TestH5A.java
@@ -46,6 +46,7 @@ public class TestH5A {
private static final int DIM_Y = 6;
long H5fid = HDF5Constants.H5I_INVALID_HID;
long H5dsid = HDF5Constants.H5I_INVALID_HID;
+ long H5atid = HDF5Constants.H5I_INVALID_HID;
long H5did = HDF5Constants.H5I_INVALID_HID;
long[] H5dims = {DIM_X, DIM_Y};
long type_id = HDF5Constants.H5I_INVALID_HID;
@@ -136,8 +137,12 @@ public class TestH5A {
}
catch (Exception ex) {
}
-
- _deleteFile(H5_FILE);
+ if (H5atid > 0)
+ try {
+ H5.H5Tclose(H5atid);
+ }
+ catch (Exception ex) {
+ }
if (type_id > 0)
try {
@@ -163,6 +168,8 @@ public class TestH5A {
}
catch (Exception ex) {
}
+
+ _deleteFile(H5_FILE);
System.out.println();
}
@@ -1072,7 +1079,7 @@ public class TestH5A {
HDF5Constants.H5P_DEFAULT);
assertTrue("testH5Awrite_readVL: ", attr_id >= 0);
- H5.H5Awrite_VLStrings(attr_id, atype_id, str_data);
+ H5.H5AwriteVL(attr_id, atype_id, str_data);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
@@ -1084,7 +1091,7 @@ public class TestH5A {
strs[j] = "";
}
try {
- H5.H5Aread_VLStrings(attr_id, atype_id, strs);
+ H5.H5AreadVL(attr_id, atype_id, strs);
}
catch (Exception ex) {
ex.printStackTrace();
@@ -1863,4 +1870,134 @@ public class TestH5A {
}
}
}
+
+ @Test
+ public void testH5AArray_string_buffer() throws Throwable
+ {
+ String att_str_name = "ArrayStringdata";
+ long att_str_id = HDF5Constants.H5I_INVALID_HID;
+ long atype_str_id = HDF5Constants.H5I_INVALID_HID;
+ long aspace_id = HDF5Constants.H5I_INVALID_HID;
+ long[] strdims = {4};
+ long[] dims = {6};
+ long lsize = 1;
+
+ String[] str_data0 = {"Parting", "is such", "sweet", "sorrow."};
+ String[] str_data1 = {"Testing", "one", "two", "three."};
+ String[] str_data2 = {"Dog,", "man's", "best", "friend."};
+ String[] str_data3 = {"Diamonds", "are", "a", "girls!"};
+ String[] str_data4 = {"S A", "T U R", "D A Y", "night"};
+ String[] str_data5 = {"That's", "all", "folks", "!!!"};
+
+ ArrayList[] arr_str_data = new ArrayList[6];
+ arr_str_data[0] = new ArrayList<String>(Arrays.asList(str_data0));
+ arr_str_data[1] = new ArrayList<String>(Arrays.asList(str_data1));
+ arr_str_data[2] = new ArrayList<String>(Arrays.asList(str_data2));
+ arr_str_data[3] = new ArrayList<String>(Arrays.asList(str_data3));
+ arr_str_data[4] = new ArrayList<String>(Arrays.asList(str_data4));
+ arr_str_data[5] = new ArrayList<String>(Arrays.asList(str_data5));
+
+ try {
+ H5atid = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5AArray_string_buffer.H5.H5Tcopy: " + err);
+ }
+ assertTrue("testH5AArray_string_buffer.H5Tcopy: ", H5atid >= 0);
+ try {
+ H5.H5Tset_size(H5atid, HDF5Constants.H5T_VARIABLE);
+ assertTrue("testH5AArray_string_buffer.H5Tis_variable_str", H5.H5Tis_variable_str(H5atid));
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5DArray_string_buffer.H5Tset_size: " + err);
+ }
+ try {
+ atype_str_id = H5.H5Tarray_create(H5atid, 1, strdims);
+ assertTrue("testH5AArray_string_buffer.H5Tarray_create: ", atype_str_id >= 0);
+ }
+ catch (Exception err) {
+ if (atype_str_id > 0)
+ try {
+ H5.H5Tclose(atype_str_id);
+ }
+ catch (Exception ex) {
+ }
+ err.printStackTrace();
+ fail("testH5AArray_string_buffer: " + err);
+ }
+
+ try {
+ aspace_id = H5.H5Screate_simple(1, dims, null);
+ assertTrue(aspace_id > 0);
+ att_str_id = H5.H5Acreate(H5did, att_str_name, atype_str_id, aspace_id, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
+ assertTrue("testH5AArray_string_buffer: ", att_str_id >= 0);
+
+ H5.H5AwriteVL(att_str_id, atype_str_id, arr_str_data);
+ }
+ catch (Exception err) {
+ if (att_str_id > 0)
+ try {
+ H5.H5Dclose(att_str_id);
+ }
+ catch (Exception ex) {
+ }
+ if (atype_str_id > 0)
+ try {
+ H5.H5Tclose(atype_str_id);
+ }
+ catch (Exception ex) {
+ }
+ err.printStackTrace();
+ fail("testH5AArray_string_buffer: " + err);
+ }
+ finally {
+ if (aspace_id > 0)
+ try {
+ H5.H5Sclose(aspace_id);
+ }
+ catch (Exception ex) {
+ }
+ }
+
+ H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
+
+ for (int j = 0; j < dims.length; j++)
+ lsize *= dims[j];
+
+ ArrayList[] arr_readbuf = new ArrayList[6];
+ for (int j = 0; j < lsize; j++)
+ arr_readbuf[j] = new ArrayList<String>();
+
+ try {
+ H5.H5AreadVL(att_str_id, atype_str_id, arr_readbuf);
+ }
+ catch (Exception ex) {
+ ex.printStackTrace();
+ }
+ finally {
+ if (att_str_id > 0)
+ try {
+ H5.H5Aclose(att_str_id);
+ }
+ catch (Exception ex) {
+ }
+ if (atype_str_id > 0)
+ try {
+ H5.H5Tclose(atype_str_id);
+ }
+ catch (Exception ex) {
+ }
+ }
+ assertTrue("testH5AArray_string_buffer:" + arr_readbuf[0].get(0),
+ arr_str_data[0].get(0).equals(arr_readbuf[0].get(0)));
+ assertTrue("testH5AArray_string_buffer:" + arr_readbuf[1].get(0),
+ arr_str_data[1].get(0).equals(arr_readbuf[1].get(0)));
+ assertTrue("testH5AArray_string_buffer:" + arr_readbuf[2].get(0),
+ arr_str_data[2].get(0).equals(arr_readbuf[2].get(0)));
+ assertTrue("testH5AArray_string_buffer:" + arr_readbuf[3].get(0),
+ arr_str_data[3].get(0).equals(arr_readbuf[3].get(0)));
+ }
}
diff --git a/java/test/TestH5D.java b/java/test/TestH5D.java
index f204e38..eacaabf 100644
--- a/java/test/TestH5D.java
+++ b/java/test/TestH5D.java
@@ -158,7 +158,7 @@ public class TestH5D {
assertTrue("TestH5D._createDataset.H5Dcreate: ", H5did >= 0);
}
- private final void _createVLDataset(long fid, long dsid, String name, long dapl)
+ private final void _createVLStrDataset(String name, long dapl)
{
try {
H5dtid = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
@@ -167,24 +167,24 @@ public class TestH5D {
err.printStackTrace();
fail("H5.H5Tcopy: " + err);
}
- assertTrue("TestH5D._createVLDataset.H5Tcopy: ", H5dtid >= 0);
+ assertTrue("TestH5D._createVLStrDataset.H5Tcopy: ", H5dtid >= 0);
try {
H5.H5Tset_size(H5dtid, HDF5Constants.H5T_VARIABLE);
- assertTrue("TestH5D._createVLDataset.H5Tis_variable_str", H5.H5Tis_variable_str(H5dtid));
+ assertTrue("TestH5D._createVLStrDataset.H5Tis_variable_str", H5.H5Tis_variable_str(H5dtid));
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Tset_size: " + err);
}
try {
- H5did = H5.H5Dcreate(fid, name, H5dtid, dsid, HDF5Constants.H5P_DEFAULT,
+ H5did = H5.H5Dcreate(H5fid, name, H5dtid, H5dsid, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT, dapl);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Dcreate: " + err);
}
- assertTrue("TestH5D._createVLDataset.H5Dcreate: ", H5did >= 0);
+ assertTrue("TestH5D._createVLStrDataset.H5Dcreate: ", H5did >= 0);
}
private final void _closeH5file() throws HDF5LibraryException
@@ -935,7 +935,7 @@ public class TestH5D {
buf_data[(indx * DIM_Y) + jndx] == 126);
}
- @Test
+ @Ignore
public void testH5Dvlen_get_buf_size()
{
String[] str_data = {"Parting", "is such", "sweet", "sorrow.", "Testing", "one", "two", "three.",
@@ -946,12 +946,12 @@ public class TestH5D {
for (int idx = 0; idx < str_data.length; idx++)
str_data_bytes += str_data[idx].length() + 1; // Account for terminating null
- _createVLDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
+ _createVLStrDataset("dset", HDF5Constants.H5P_DEFAULT);
try {
if ((H5did >= 0) && (H5dtid >= 0))
- H5.H5Dwrite_VLStrings(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, str_data);
+ H5.H5DwriteVL(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, str_data);
}
catch (Exception e) {
e.printStackTrace();
@@ -966,25 +966,121 @@ public class TestH5D {
}
@Ignore
- public void testH5Dvlen_read_default_buffer() throws Throwable
+ public void testH5Dvlen_string_buffer() throws Throwable
{
- String[] str_data = {"Parting", "is such", "sweet", "sorrow.", "Testing", "one", "two", "three.",
- "Dog,", "man's", "best", "friend.", "Diamonds", "are", "a", "girls!",
- "S A", "T U R", "D A Y", "night", "That's", "all", "folks", "!!!"};
- byte[] read_data = new byte[512];
+ String dset_str_name = "VLStringdata";
+ long dset_str_id = HDF5Constants.H5I_INVALID_HID;
+ long dtype_str_id = HDF5Constants.H5I_INVALID_HID;
+ long dspace_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {64};
+ long lsize = 1;
- _createVLDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
+ String[] str_data0 = {"Parting", "is such", "sweet", "sorrow."};
+ String[] str_data1 = {"Testing", "one", "two", "three."};
+ String[] str_data2 = {"Dog,", "man's", "best", "friend."};
+ String[] str_data3 = {"Diamonds", "are", "a", "girls!"};
+ String[] str_data4 = {"S A", "T U R", "D A Y", "night"};
+ String[] str_data5 = {"That's", "all", "folks", "!!!"};
+
+ ArrayList[] vl_str_data = new ArrayList[6];
+ vl_str_data[0] = new ArrayList<String>(Arrays.asList(str_data0));
+ vl_str_data[1] = new ArrayList<String>(Arrays.asList(str_data1));
+ vl_str_data[2] = new ArrayList<String>(Arrays.asList(str_data2));
+ vl_str_data[3] = new ArrayList<String>(Arrays.asList(str_data3));
+ vl_str_data[4] = new ArrayList<String>(Arrays.asList(str_data4));
+ vl_str_data[5] = new ArrayList<String>(Arrays.asList(str_data5));
try {
- H5.H5Dwrite_VLStrings(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, str_data);
+ H5dtid = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
}
- catch (Exception e) {
- e.printStackTrace();
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5Dvlen_string_buffer.H5.H5Tcopy: " + err);
+ }
+ assertTrue("testH5Dvlen_string_buffer.H5Tcopy: ", H5dtid >= 0);
+ try {
+ H5.H5Tset_size(H5dtid, HDF5Constants.H5T_VARIABLE);
+ assertTrue("testH5Dvlen_string_buffer.H5Tis_variable_str", H5.H5Tis_variable_str(H5dtid));
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5Dvlen_string_buffer.H5Tset_size: " + err);
+ }
+ try {
+ dtype_str_id = H5.H5Tvlen_create(H5dtid);
+ assertTrue("testH5Dvlen_string_buffer.H5Tvlen_create: ", dtype_str_id >= 0);
+ }
+ catch (Exception err) {
+ if (dtype_str_id > 0)
+ try {
+ H5.H5Tclose(dtype_str_id);
+ }
+ catch (Exception ex) {
+ }
+ err.printStackTrace();
+ fail("testH5Dvlen_string_buffer: " + err);
}
- H5.H5Dread(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT,
- read_data);
+ try {
+ dspace_id = H5.H5Screate_simple(1, dims, null);
+ assertTrue(dspace_id > 0);
+ dset_str_id =
+ H5.H5Dcreate(H5fid, dset_str_name, dtype_str_id, dspace_id, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ assertTrue("testH5Dvlen_string_buffer: ", dset_str_id >= 0);
+
+ H5.H5DwriteVL(dset_str_id, dtype_str_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, vl_str_data);
+ }
+ catch (Exception err) {
+ if (dset_str_id > 0)
+ try {
+ H5.H5Dclose(dset_str_id);
+ }
+ catch (Exception ex) {
+ }
+ if (dtype_str_id > 0)
+ try {
+ H5.H5Tclose(dtype_str_id);
+ }
+ catch (Exception ex) {
+ }
+ err.printStackTrace();
+ fail("testH5Dvlen_string_buffer: " + err);
+ }
+ finally {
+ if (dspace_id > 0)
+ try {
+ H5.H5Sclose(dspace_id);
+ }
+ catch (Exception ex) {
+ }
+ }
+
+ H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
+
+ for (int j = 0; j < dims.length; j++)
+ lsize *= dims[j];
+
+ ArrayList[] vl_readbuf = new ArrayList[4];
+ for (int j = 0; j < lsize; j++)
+ vl_readbuf[j] = new ArrayList<String>();
+
+ try {
+ H5.H5DreadVL(dset_str_id, dtype_str_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, vl_readbuf);
+ }
+ catch (Exception ex) {
+ ex.printStackTrace();
+ }
+ assertTrue("testH5Dvlen_string_buffer:" + vl_readbuf[0].get(0),
+ vl_str_data[0].get(0).equals(vl_readbuf[0].get(0)));
+ assertTrue("testH5Dvlen_string_buffer:" + vl_readbuf[1].get(0),
+ vl_str_data[1].get(0).equals(vl_readbuf[1].get(0)));
+ assertTrue("testH5Dvlen_string_buffer:" + vl_readbuf[2].get(0),
+ vl_str_data[2].get(0).equals(vl_readbuf[2].get(0)));
+ assertTrue("testH5Dvlen_string_buffer:" + vl_readbuf[3].get(0),
+ vl_str_data[3].get(0).equals(vl_readbuf[3].get(0)));
}
@Test
@@ -995,20 +1091,21 @@ public class TestH5D {
"S A", "T U R", "D A Y", "night", "That's", "all", "folks", "!!!"};
String[] str_rdata = new String[DIM_X * DIM_Y];
- _createVLDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
+ _createVLStrDataset("dset", HDF5Constants.H5P_DEFAULT);
try {
if ((H5did >= 0) && (H5dtid >= 0))
- H5.H5Dwrite_VLStrings(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, str_wdata);
+ H5.H5DwriteVL(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, str_wdata);
}
catch (Exception e) {
e.printStackTrace();
}
+
try {
if ((H5did >= 0) && (H5dtid >= 0))
- H5.H5Dread_VLStrings(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, str_rdata);
+ H5.H5DreadVL(H5did, H5dtid, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, str_rdata);
}
catch (Exception e) {
e.printStackTrace();
@@ -1158,46 +1255,46 @@ public class TestH5D {
lsize *= dims[j];
// Read Integer data
- ArrayList[] vl_readbuf = new ArrayList[4];
+ ArrayList[] vl_int_readbuf = new ArrayList[4];
for (int j = 0; j < lsize; j++)
- vl_readbuf[j] = new ArrayList<Integer>();
+ vl_int_readbuf[j] = new ArrayList<Integer>();
try {
H5.H5DreadVL(dset_int_id, dtype_int_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, vl_readbuf);
+ HDF5Constants.H5P_DEFAULT, vl_int_readbuf);
}
catch (Exception ex) {
ex.printStackTrace();
}
- assertTrue("testH5DVLwr:" + vl_readbuf[0].get(0),
- vl_int_data[0].get(0).equals(vl_readbuf[0].get(0)));
- assertTrue("testH5DVLwr:" + vl_readbuf[1].get(0),
- vl_int_data[1].get(0).equals(vl_readbuf[1].get(0)));
- assertTrue("testH5DVLwr:" + vl_readbuf[2].get(0),
- vl_int_data[2].get(0).equals(vl_readbuf[2].get(0)));
- assertTrue("testH5DVLwr:" + vl_readbuf[3].get(0),
- vl_int_data[3].get(0).equals(vl_readbuf[3].get(0)));
+ assertTrue("testH5DVLwr:" + vl_int_readbuf[0].get(0),
+ vl_int_data[0].get(0).equals(vl_int_readbuf[0].get(0)));
+ assertTrue("testH5DVLwr:" + vl_int_readbuf[1].get(0),
+ vl_int_data[1].get(0).equals(vl_int_readbuf[1].get(0)));
+ assertTrue("testH5DVLwr:" + vl_int_readbuf[2].get(0),
+ vl_int_data[2].get(0).equals(vl_int_readbuf[2].get(0)));
+ assertTrue("testH5DVLwr:" + vl_int_readbuf[3].get(0),
+ vl_int_data[3].get(0).equals(vl_int_readbuf[3].get(0)));
// Read Double data
- vl_readbuf = new ArrayList[4];
+ ArrayList[] vl_dbl_readbuf = new ArrayList[4];
for (int j = 0; j < lsize; j++)
- vl_readbuf[j] = new ArrayList<Double>();
+ vl_dbl_readbuf[j] = new ArrayList<Double>();
try {
H5.H5DreadVL(dset_dbl_id, dtype_dbl_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
- HDF5Constants.H5P_DEFAULT, vl_readbuf);
+ HDF5Constants.H5P_DEFAULT, vl_dbl_readbuf);
}
catch (Exception ex) {
ex.printStackTrace();
}
- assertTrue("testH5DVLwr:" + vl_readbuf[0].get(0),
- vl_dbl_data[0].get(0).equals(vl_readbuf[0].get(0)));
- assertTrue("testH5DVLwr:" + vl_readbuf[1].get(0),
- vl_dbl_data[1].get(0).equals(vl_readbuf[1].get(0)));
- assertTrue("testH5DVLwr:" + vl_readbuf[2].get(0),
- vl_dbl_data[2].get(0).equals(vl_readbuf[2].get(0)));
- assertTrue("testH5DVLwr:" + vl_readbuf[3].get(0),
- vl_dbl_data[3].get(0).equals(vl_readbuf[3].get(0)));
+ assertTrue("testH5DVLwr:" + vl_dbl_readbuf[0].get(0),
+ vl_dbl_data[0].get(0).equals(vl_dbl_readbuf[0].get(0)));
+ assertTrue("testH5DVLwr:" + vl_dbl_readbuf[1].get(0),
+ vl_dbl_data[1].get(0).equals(vl_dbl_readbuf[1].get(0)));
+ assertTrue("testH5DVLwr:" + vl_dbl_readbuf[2].get(0),
+ vl_dbl_data[2].get(0).equals(vl_dbl_readbuf[2].get(0)));
+ assertTrue("testH5DVLwr:" + vl_dbl_readbuf[3].get(0),
+ vl_dbl_data[3].get(0).equals(vl_dbl_readbuf[3].get(0)));
}
catch (Throwable err) {
err.printStackTrace();
@@ -1524,4 +1621,330 @@ public class TestH5D {
}
}
}
+
+ @Test
+ public void testH5DArray_string_buffer() throws Throwable
+ {
+ String dset_str_name = "ArrayStringdata";
+ long dset_str_id = HDF5Constants.H5I_INVALID_HID;
+ long dtype_str_id = HDF5Constants.H5I_INVALID_HID;
+ long dspace_id = HDF5Constants.H5I_INVALID_HID;
+ long[] strdims = {4};
+ long[] dims = {6};
+ long lsize = 1;
+
+ String[] str_data0 = {"Parting", "is such", "sweet", "sorrow."};
+ String[] str_data1 = {"Testing", "one", "two", "three."};
+ String[] str_data2 = {"Dog,", "man's", "best", "friend."};
+ String[] str_data3 = {"Diamonds", "are", "a", "girls!"};
+ String[] str_data4 = {"S A", "T U R", "D A Y", "night"};
+ String[] str_data5 = {"That's", "all", "folks", "!!!"};
+
+ ArrayList[] arr_str_data = new ArrayList[6];
+ arr_str_data[0] = new ArrayList<String>(Arrays.asList(str_data0));
+ arr_str_data[1] = new ArrayList<String>(Arrays.asList(str_data1));
+ arr_str_data[2] = new ArrayList<String>(Arrays.asList(str_data2));
+ arr_str_data[3] = new ArrayList<String>(Arrays.asList(str_data3));
+ arr_str_data[4] = new ArrayList<String>(Arrays.asList(str_data4));
+ arr_str_data[5] = new ArrayList<String>(Arrays.asList(str_data5));
+
+ try {
+ H5dtid = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5DArray_string_buffer.H5.H5Tcopy: " + err);
+ }
+ assertTrue("testH5DArray_string_buffer.H5Tcopy: ", H5dtid >= 0);
+ try {
+ H5.H5Tset_size(H5dtid, HDF5Constants.H5T_VARIABLE);
+ assertTrue("testH5DArray_string_buffer.H5Tis_variable_str", H5.H5Tis_variable_str(H5dtid));
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("testH5DArray_string_buffer.H5Tset_size: " + err);
+ }
+ try {
+ dtype_str_id = H5.H5Tarray_create(H5dtid, 1, strdims);
+ assertTrue("testH5DArray_string_buffer.H5Tarray_create: ", dtype_str_id >= 0);
+ }
+ catch (Exception err) {
+ if (dtype_str_id > 0)
+ try {
+ H5.H5Tclose(dtype_str_id);
+ }
+ catch (Exception ex) {
+ }
+ err.printStackTrace();
+ fail("testH5DArray_string_buffer: " + err);
+ }
+
+ try {
+ dspace_id = H5.H5Screate_simple(1, dims, null);
+ assertTrue(dspace_id > 0);
+ dset_str_id =
+ H5.H5Dcreate(H5fid, dset_str_name, dtype_str_id, dspace_id, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+ assertTrue("testH5DArray_string_buffer: ", dset_str_id >= 0);
+
+ H5.H5DwriteVL(dset_str_id, dtype_str_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, arr_str_data);
+ }
+ catch (Exception err) {
+ if (dset_str_id > 0)
+ try {
+ H5.H5Dclose(dset_str_id);
+ }
+ catch (Exception ex) {
+ }
+ if (dtype_str_id > 0)
+ try {
+ H5.H5Tclose(dtype_str_id);
+ }
+ catch (Exception ex) {
+ }
+ err.printStackTrace();
+ fail("testH5DArray_string_buffer: " + err);
+ }
+ finally {
+ if (dspace_id > 0)
+ try {
+ H5.H5Sclose(dspace_id);
+ }
+ catch (Exception ex) {
+ }
+ }
+
+ H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
+
+ for (int j = 0; j < dims.length; j++)
+ lsize *= dims[j];
+
+ ArrayList[] arr_readbuf = new ArrayList[6];
+ for (int j = 0; j < lsize; j++)
+ arr_readbuf[j] = new ArrayList<String>();
+
+ try {
+ H5.H5DreadVL(dset_str_id, dtype_str_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, arr_readbuf);
+ }
+ catch (Exception ex) {
+ ex.printStackTrace();
+ }
+ finally {
+ if (dset_str_id > 0)
+ try {
+ H5.H5Dclose(dset_str_id);
+ }
+ catch (Exception ex) {
+ }
+ if (dtype_str_id > 0)
+ try {
+ H5.H5Tclose(dtype_str_id);
+ }
+ catch (Exception ex) {
+ }
+ }
+ assertTrue("testH5DArray_string_buffer:" + arr_readbuf[0].get(0),
+ arr_str_data[0].get(0).equals(arr_readbuf[0].get(0)));
+ assertTrue("testH5DArray_string_buffer:" + arr_readbuf[1].get(0),
+ arr_str_data[1].get(0).equals(arr_readbuf[1].get(0)));
+ assertTrue("testH5DArray_string_buffer:" + arr_readbuf[2].get(0),
+ arr_str_data[2].get(0).equals(arr_readbuf[2].get(0)));
+ assertTrue("testH5DArray_string_buffer:" + arr_readbuf[3].get(0),
+ arr_str_data[3].get(0).equals(arr_readbuf[3].get(0)));
+ }
+
+ @Test
+ public void testH5DArrayenum_rw()
+ {
+ String dset_enum_name = "ArrayEnumdata";
+ long dset_enum_id = HDF5Constants.H5I_INVALID_HID;
+ long dtype_enum_id = HDF5Constants.H5I_INVALID_HID;
+ long dtype_arr_enum_id = HDF5Constants.H5I_INVALID_HID;
+ long dspace_id = HDF5Constants.H5I_INVALID_HID;
+ long[] dims = {4};
+ long lsize = 1;
+ String enum_type = "Enum_type";
+ byte[] enum_val = new byte[1];
+ String enum_name = null;
+
+ // Create a enumerate datatype
+ try {
+ dtype_enum_id = H5.H5Tcreate(HDF5Constants.H5T_ENUM, (long)1);
+ assertTrue("testH5DArrayenum_wr.H5Tarray_create: ", dtype_enum_id >= 0);
+ }
+ catch (Throwable err) {
+ if (dtype_enum_id > 0)
+ try {
+ H5.H5Tclose(dtype_enum_id);
+ }
+ catch (Exception ex) {
+ }
+ err.printStackTrace();
+ fail("testH5DArrayenum_rw:H5Tcreate " + err);
+ }
+
+ try {
+ enum_val[0] = 10;
+ H5.H5Tenum_insert(dtype_enum_id, "RED", enum_val);
+ enum_val[0] = 11;
+ H5.H5Tenum_insert(dtype_enum_id, "GREEN", enum_val);
+ enum_val[0] = 12;
+ H5.H5Tenum_insert(dtype_enum_id, "BLUE", enum_val);
+ enum_val[0] = 13;
+ H5.H5Tenum_insert(dtype_enum_id, "ORANGE", enum_val);
+ enum_val[0] = 14;
+ H5.H5Tenum_insert(dtype_enum_id, "YELLOW", enum_val);
+
+ // Query member number and member index by member name, for enumeration type.
+ assertTrue("Can't get member number", H5.H5Tget_nmembers(dtype_enum_id) == 5);
+ assertTrue("Can't get correct index number",
+ H5.H5Tget_member_index(dtype_enum_id, "ORANGE") == 3);
+
+ // Commit enumeration datatype and close it */
+ H5.H5Tcommit(H5fid, enum_type, dtype_enum_id, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
+
+ H5.H5Tclose(dtype_enum_id);
+
+ // Open the dataytpe for query
+ dtype_enum_id = H5.H5Topen(H5fid, enum_type, HDF5Constants.H5P_DEFAULT);
+ assertTrue("testH5DArrayenum_rw:H5Tcreate", dtype_enum_id >= 0);
+
+ // Query member number and member index by member name, for enumeration type
+ assertTrue("Can't get member number", H5.H5Tget_nmembers(dtype_enum_id) == 5);
+ assertTrue("Can't get correct index number",
+ H5.H5Tget_member_index(dtype_enum_id, "ORANGE") == 3);
+
+ // Query member value by member name, for enumeration type
+ H5.H5Tenum_valueof(dtype_enum_id, "ORANGE", enum_val);
+ assertTrue("Incorrect value for enum member", enum_val[0] == 13);
+
+ // Query member value by member index, for enumeration type
+ H5.H5Tget_member_value(dtype_enum_id, 2, enum_val);
+ assertTrue("Incorrect value for enum member", enum_val[0] == 12);
+
+ // Query member name by member value, for enumeration type
+ enum_val[0] = 14;
+ enum_name = H5.H5Tenum_nameof(dtype_enum_id, enum_val, 16);
+ assertTrue("Incorrect name for enum member", enum_name.compareTo("YELLOW") == 0);
+
+ ArrayList[] arr_enum_data = new ArrayList[4];
+ try {
+ // Write Integer data
+ arr_enum_data[0] = new ArrayList<Integer>(Arrays.asList(10, 11, 12, 13));
+ arr_enum_data[1] = new ArrayList<Integer>(Arrays.asList(11, 12, 13, 14));
+ arr_enum_data[2] = new ArrayList<Integer>(Arrays.asList(12, 13, 14, 10));
+ arr_enum_data[3] = new ArrayList<Integer>(Arrays.asList(13, 14, 10, 11));
+ Class dataClass = arr_enum_data.getClass();
+ assertTrue("testH5DArrayenum_wr.getClass: " + dataClass, dataClass.isArray());
+
+ try {
+ dtype_arr_enum_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_U32LE, 1, dims);
+ assertTrue("testH5DArrayenum_wr.H5Tarray_create: ", dtype_arr_enum_id >= 0);
+ }
+ catch (Exception err) {
+ if (dtype_arr_enum_id > 0)
+ try {
+ H5.H5Tclose(dtype_arr_enum_id);
+ }
+ catch (Exception ex) {
+ }
+ err.printStackTrace();
+ fail("H5.testH5DArrayenum_wr: " + err);
+ }
+
+ dspace_id = H5.H5Screate_simple(1, dims, null);
+ assertTrue(dspace_id > 0);
+ dset_enum_id = H5.H5Dcreate(H5fid, dset_enum_name, dtype_arr_enum_id, dspace_id,
+ HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
+ HDF5Constants.H5P_DEFAULT);
+ assertTrue("testH5DVLwr: ", dset_enum_id >= 0);
+
+ H5.H5DwriteVL(dset_enum_id, dtype_arr_enum_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, arr_enum_data);
+ }
+ catch (Throwable err) {
+ if (dset_enum_id > 0)
+ try {
+ H5.H5Dclose(dset_enum_id);
+ }
+ catch (Exception ex) {
+ }
+ if (dtype_enum_id > 0)
+ try {
+ H5.H5Tclose(dtype_enum_id);
+ }
+ catch (Exception ex) {
+ }
+ if (dtype_arr_enum_id > 0)
+ try {
+ H5.H5Tclose(dtype_arr_enum_id);
+ }
+ catch (Exception ex) {
+ }
+ err.printStackTrace();
+ fail("testH5DArrayenum_rw:query " + err);
+ }
+ finally {
+ if (dspace_id > 0)
+ try {
+ H5.H5Sclose(dspace_id);
+ }
+ catch (Exception ex) {
+ }
+ }
+
+ H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
+
+ for (int j = 0; j < dims.length; j++)
+ lsize *= dims[j];
+
+ // Read Integer data
+ ArrayList[] arr_readbuf = new ArrayList[4];
+ for (int j = 0; j < lsize; j++)
+ arr_readbuf[j] = new ArrayList<Integer>();
+
+ try {
+ H5.H5DreadVL(dset_enum_id, dtype_arr_enum_id, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
+ HDF5Constants.H5P_DEFAULT, arr_readbuf);
+ }
+ catch (Exception ex) {
+ ex.printStackTrace();
+ }
+ assertTrue("testH5DVLArrayenum_wr:" + arr_readbuf[0].get(0),
+ arr_enum_data[0].get(0).equals(arr_readbuf[0].get(0)));
+ assertTrue("testH5DVLArrayenum_wr:" + arr_readbuf[1].get(0),
+ arr_enum_data[1].get(0).equals(arr_readbuf[1].get(0)));
+ assertTrue("testH5DVLArrayenum_wr:" + arr_readbuf[2].get(0),
+ arr_enum_data[2].get(0).equals(arr_readbuf[2].get(0)));
+ assertTrue("testH5DVLArrayenum_wr:" + arr_readbuf[3].get(0),
+ arr_enum_data[3].get(0).equals(arr_readbuf[3].get(0)));
+ }
+ catch (Throwable err) {
+ err.printStackTrace();
+ fail("H5.testH5DArrayenum_wr: " + err);
+ }
+ finally {
+ if (dset_enum_id > 0)
+ try {
+ H5.H5Dclose(dset_enum_id);
+ }
+ catch (Exception ex) {
+ }
+ if (dtype_enum_id > 0)
+ try {
+ H5.H5Tclose(dtype_enum_id);
+ }
+ catch (Exception ex) {
+ }
+ if (dtype_arr_enum_id > 0)
+ try {
+ H5.H5Tclose(dtype_arr_enum_id);
+ }
+ catch (Exception ex) {
+ }
+ }
+ }
}
diff --git a/java/test/testfiles/JUnit-TestH5A.txt b/java/test/testfiles/JUnit-TestH5A.txt
index 49e5c97..f31c86c 100644
--- a/java/test/testfiles/JUnit-TestH5A.txt
+++ b/java/test/testfiles/JUnit-TestH5A.txt
@@ -29,9 +29,10 @@ JUnit version 4.11
.testH5Adelete_by_idx_null
.testH5Adelete_by_idx_invalidobject
.testH5Awrite_readVL
+.testH5AArray_string_buffer
.testH5Aget_info1
Time: XXXX
-OK (31 tests)
+OK (32 tests)
diff --git a/java/test/testfiles/JUnit-TestH5D.txt b/java/test/testfiles/JUnit-TestH5D.txt
index 19abd80..4c30621 100644
--- a/java/test/testfiles/JUnit-TestH5D.txt
+++ b/java/test/testfiles/JUnit-TestH5D.txt
@@ -1,4 +1,5 @@
JUnit version 4.11
+.testH5DArrayenum_rw
.testH5DVLwrVL
.testH5Dget_storage_size
.testH5DArraywr
@@ -14,8 +15,8 @@ JUnit version 4.11
.testH5Dget_storage_size_empty
.testH5Diterate
.testH5Dget_access_plist
-.testH5Dvlen_get_buf_size
.testH5Dget_space_closed
+.testH5DArray_string_buffer
.testH5Dget_space_status
.testH5Dvlen_write_read
.testH5Dget_space
@@ -23,5 +24,5 @@ JUnit version 4.11
Time: XXXX
-OK (21 tests)
+OK (22 tests)
generated by cgit v0.12 at 2024-07-01 10:38:07 (GMT)